AutoCloner

Multiple sequence alignment - TraesCS6D01G225000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G225000	chr6D	100.000	2849	0	0	1	2849	316826677	316823829	0.000000e+00	5262.0
1	TraesCS6D01G225000	chr6D	97.233	1048	18	5	827	1874	237427303	237428339	0.000000e+00	1764.0
2	TraesCS6D01G225000	chr6D	89.375	320	34	0	49	368	202942603	202942922	1.230000e-108	403.0
3	TraesCS6D01G225000	chr6D	94.737	114	5	1	2218	2331	237428554	237428666	2.920000e-40	176.0
4	TraesCS6D01G225000	chr6D	98.214	56	1	0	2156	2211	237428462	237428517	6.500000e-17	99.0
5	TraesCS6D01G225000	chr6D	96.296	54	2	0	1869	1922	237428369	237428422	3.910000e-14	89.8
6	TraesCS6D01G225000	chr6D	100.000	31	0	0	537	567	237427230	237427260	1.100000e-04	58.4
7	TraesCS6D01G225000	chr6B	97.712	2404	44	4	5	2406	507619695	507622089	0.000000e+00	4124.0
8	TraesCS6D01G225000	chr6B	97.483	1033	15	3	842	1874	364901574	364902595	0.000000e+00	1753.0
9	TraesCS6D01G225000	chr6B	95.354	452	21	0	2398	2849	507622240	507622691	0.000000e+00	719.0
10	TraesCS6D01G225000	chr6B	90.066	151	14	1	366	516	364883059	364883208	8.050000e-46	195.0
11	TraesCS6D01G225000	chr6B	89.103	156	9	2	620	775	364899703	364899850	1.350000e-43	187.0
12	TraesCS6D01G225000	chr6B	94.737	114	5	1	2218	2331	364902804	364902916	2.920000e-40	176.0
13	TraesCS6D01G225000	chr6B	95.455	66	2	1	2156	2221	364902711	364902775	1.400000e-18	104.0
14	TraesCS6D01G225000	chr6B	96.000	50	2	0	1873	1922	364902618	364902667	6.540000e-12	82.4
15	TraesCS6D01G225000	chr6B	91.111	45	4	0	777	821	364899870	364899914	8.520000e-06	62.1
16	TraesCS6D01G225000	chr6A	96.851	1048	20	6	827	1874	306047747	306046713	0.000000e+00	1740.0
17	TraesCS6D01G225000	chr6A	88.703	239	19	2	537	775	306048097	306047867	4.650000e-73	285.0
18	TraesCS6D01G225000	chr6A	93.860	114	6	1	2218	2331	306046500	306046388	1.360000e-38	171.0
19	TraesCS6D01G225000	chr6A	80.392	153	26	4	2484	2635	421467519	421467668	2.320000e-21	113.0
20	TraesCS6D01G225000	chr6A	95.652	69	3	0	2156	2224	306046594	306046526	8.340000e-21	111.0
21	TraesCS6D01G225000	chr6A	96.296	54	2	0	1869	1922	306046683	306046630	3.910000e-14	89.8
22	TraesCS6D01G225000	chr2D	82.619	840	134	12	1009	1842	419052017	419051184	0.000000e+00	732.0
23	TraesCS6D01G225000	chr2B	82.479	839	137	10	1009	1842	491355103	491354270	0.000000e+00	726.0
24	TraesCS6D01G225000	chr2B	89.752	322	32	1	50	371	679249243	679248923	7.350000e-111	411.0
25	TraesCS6D01G225000	chr2A	82.067	842	135	15	1009	1842	570724218	570725051	0.000000e+00	704.0
26	TraesCS6D01G225000	chr2A	92.086	139	8	2	2712	2849	7004910	7005046	2.900000e-45	193.0
27	TraesCS6D01G225000	chr5D	91.026	312	28	0	59	370	127069192	127068881	3.390000e-114	422.0
28	TraesCS6D01G225000	chr5D	89.720	321	33	0	50	370	383710829	383711149	7.350000e-111	411.0
29	TraesCS6D01G225000	chr5B	89.058	329	33	3	44	371	674896941	674897267	3.420000e-109	405.0
30	TraesCS6D01G225000	chr5B	86.364	66	8	1	2468	2532	439423792	439423857	1.420000e-08	71.3
31	TraesCS6D01G225000	chr4D	90.096	313	29	2	59	370	281075406	281075095	3.420000e-109	405.0
32	TraesCS6D01G225000	chr4D	89.130	322	35	0	50	371	392732195	392731874	4.420000e-108	401.0
33	TraesCS6D01G225000	chr4D	83.505	194	27	4	2462	2653	484412356	484412166	2.920000e-40	176.0
34	TraesCS6D01G225000	chr4D	92.537	67	5	0	1621	1687	177490196	177490130	2.340000e-16	97.1
35	TraesCS6D01G225000	chr4A	88.754	329	33	3	40	368	125809072	125809396	1.590000e-107	399.0
36	TraesCS6D01G225000	chr4A	78.409	176	37	1	2465	2640	689666920	689667094	2.320000e-21	113.0
37	TraesCS6D01G225000	chr7D	91.391	151	8	5	2702	2849	199571061	199571209	4.810000e-48	202.0
38	TraesCS6D01G225000	chr1B	81.004	279	32	11	2471	2730	240503600	240503324	4.810000e-48	202.0
39	TraesCS6D01G225000	chr7A	90.728	151	10	4	2701	2849	100250589	100250441	6.230000e-47	198.0
40	TraesCS6D01G225000	chr7A	76.836	177	36	5	2468	2640	550051451	550051626	8.400000e-16	95.3
41	TraesCS6D01G225000	chr3B	90.667	150	12	2	2701	2849	796796848	796796996	6.230000e-47	198.0
42	TraesCS6D01G225000	chr3B	88.272	162	10	8	2692	2849	168268651	168268807	4.850000e-43	185.0
43	TraesCS6D01G225000	chr7B	91.096	146	11	2	2705	2849	396641109	396641253	2.240000e-46	196.0
44	TraesCS6D01G225000	chr7B	91.045	67	6	0	1621	1687	348950684	348950750	1.090000e-14	91.6
45	TraesCS6D01G225000	chrUn	89.744	156	10	6	2697	2849	442546664	442546816	8.050000e-46	195.0
46	TraesCS6D01G225000	chr5A	90.000	150	12	3	2701	2849	622085716	622085863	1.040000e-44	191.0
47	TraesCS6D01G225000	chr5A	84.848	165	21	3	2489	2653	664818426	664818266	2.270000e-36	163.0
48	TraesCS6D01G225000	chr5A	78.571	266	33	11	2488	2730	404227463	404227199	1.370000e-33	154.0
49	TraesCS6D01G225000	chr5A	87.931	58	6	1	2468	2524	472576230	472576287	1.830000e-07	67.6
50	TraesCS6D01G225000	chr1D	84.762	105	11	3	2560	2660	482216737	482216634	1.810000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G225000	chr6D	316823829	316826677	2848	True	5262.000000	5262	100.0000	1	2849	1	chr6D.!!$R1	2848
1	TraesCS6D01G225000	chr6D	237427230	237428666	1436	False	437.440000	1764	97.2960	537	2331	5	chr6D.!!$F2	1794
2	TraesCS6D01G225000	chr6B	507619695	507622691	2996	False	2421.500000	4124	96.5330	5	2849	2	chr6B.!!$F3	2844
3	TraesCS6D01G225000	chr6B	364899703	364902916	3213	False	394.083333	1753	93.9815	620	2331	6	chr6B.!!$F2	1711
4	TraesCS6D01G225000	chr6A	306046388	306048097	1709	True	479.360000	1740	94.2724	537	2331	5	chr6A.!!$R1	1794
5	TraesCS6D01G225000	chr2D	419051184	419052017	833	True	732.000000	732	82.6190	1009	1842	1	chr2D.!!$R1	833
6	TraesCS6D01G225000	chr2B	491354270	491355103	833	True	726.000000	726	82.4790	1009	1842	1	chr2B.!!$R1	833
7	TraesCS6D01G225000	chr2A	570724218	570725051	833	False	704.000000	704	82.0670	1009	1842	1	chr2A.!!$F2	833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
135	136	0.552848	AGGTCCCCAATGCATAGGTG	59.447	55.0	13.23	2.78	0.00	4.00	F
272	273	2.235402	GTTTCTTCCTCGGGTCACCATA	59.765	50.0	0.00	0.00	36.13	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1674	3343	0.108472	CTGAGATGAGCCGTGCAGAA	60.108	55.0	0.00	0.0	0.00	3.02	R
1980	3685	0.803768	CGGGTGCACGAATCTCTCAG	60.804	60.0	11.45	0.0	35.47	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	6.900186	ACATCTTAGGGAGAGAGAAGAAATGA	59.100	38.462	0.00	0.00	37.93	2.57
62	63	3.769844	TGACACATCCTTAGACCTCTTCC	59.230	47.826	0.00	0.00	0.00	3.46
69	70	3.782523	TCCTTAGACCTCTTCCAATGCAT	59.217	43.478	0.00	0.00	0.00	3.96
135	136	0.552848	AGGTCCCCAATGCATAGGTG	59.447	55.000	13.23	2.78	0.00	4.00
237	238	7.867752	TCATTTAAGTGTTTTTCCTAGGTTCG	58.132	34.615	9.08	0.00	0.00	3.95
268	269	2.249844	TTGTTTCTTCCTCGGGTCAC	57.750	50.000	0.00	0.00	0.00	3.67
272	273	2.235402	GTTTCTTCCTCGGGTCACCATA	59.765	50.000	0.00	0.00	36.13	2.74
323	324	5.126061	GGCACATCAGATTTTTCACCTACAT	59.874	40.000	0.00	0.00	0.00	2.29
350	351	3.009723	CCTTAGCACATGTACAAGGTGG	58.990	50.000	24.08	12.55	32.73	4.61
385	386	2.485657	GCCTTATGGAGCCTAAGTGTCC	60.486	54.545	0.00	0.00	34.57	4.02
449	450	3.793559	AGTCACGCGCTAATTTATTCCT	58.206	40.909	5.73	0.00	0.00	3.36
452	453	5.233689	AGTCACGCGCTAATTTATTCCTAAC	59.766	40.000	5.73	0.00	0.00	2.34
460	461	8.347035	GCGCTAATTTATTCCTAACAAATACCA	58.653	33.333	0.00	0.00	0.00	3.25
688	689	8.893219	TGACATTGAACCTCAATATCAGTATC	57.107	34.615	6.31	0.00	43.09	2.24
689	690	8.708378	TGACATTGAACCTCAATATCAGTATCT	58.292	33.333	6.31	0.00	43.09	1.98
690	691	9.553064	GACATTGAACCTCAATATCAGTATCTT	57.447	33.333	1.71	0.00	44.60	2.40
691	692	9.553064	ACATTGAACCTCAATATCAGTATCTTC	57.447	33.333	1.71	0.00	44.60	2.87
692	693	9.551734	CATTGAACCTCAATATCAGTATCTTCA	57.448	33.333	1.71	0.00	44.60	3.02
838	2507	3.268103	AATCCACCCACTCCACCGC	62.268	63.158	0.00	0.00	0.00	5.68
881	2550	4.034258	CACTTGCACAGCCCGCAG	62.034	66.667	0.00	0.00	41.18	5.18
1485	3154	4.796231	CGTGAAGCCCTCGTCCGG	62.796	72.222	0.00	0.00	0.00	5.14
1674	3343	1.826054	CGCGGAGGGAGAGAGTGAT	60.826	63.158	0.00	0.00	46.37	3.06
1934	3639	0.037697	TCGACATCGGAAAGGTGTGG	60.038	55.000	0.73	0.00	45.82	4.17
1980	3685	4.083110	CCATTATCTGGTCCATCGAATTGC	60.083	45.833	0.00	0.00	40.49	3.56
2005	3710	0.460284	GATTCGTGCACCCGTCTGAT	60.460	55.000	12.15	0.00	0.00	2.90
2030	3735	1.824230	AGCAGTGTTTTTCCAGCAACA	59.176	42.857	0.00	0.00	0.00	3.33
2054	3759	2.074576	CGGGCAGCTCAGATCATTATG	58.925	52.381	0.00	0.00	0.00	1.90
2127	3832	5.740290	TTTTATCGGAGAGTGGAGACTTT	57.260	39.130	0.00	0.00	43.63	2.66
2128	3833	5.740290	TTTATCGGAGAGTGGAGACTTTT	57.260	39.130	0.00	0.00	43.63	2.27
2129	3834	6.845758	TTTATCGGAGAGTGGAGACTTTTA	57.154	37.500	0.00	0.00	43.63	1.52
2130	3835	7.419711	TTTATCGGAGAGTGGAGACTTTTAT	57.580	36.000	0.00	0.00	43.63	1.40
2131	3836	8.529424	TTTATCGGAGAGTGGAGACTTTTATA	57.471	34.615	0.00	0.00	43.63	0.98
2132	3837	8.529424	TTATCGGAGAGTGGAGACTTTTATAA	57.471	34.615	0.00	0.00	43.63	0.98
2133	3838	7.604657	ATCGGAGAGTGGAGACTTTTATAAT	57.395	36.000	0.00	0.00	43.63	1.28
2134	3839	7.419711	TCGGAGAGTGGAGACTTTTATAATT	57.580	36.000	0.00	0.00	30.16	1.40
2135	3840	7.265673	TCGGAGAGTGGAGACTTTTATAATTG	58.734	38.462	0.00	0.00	30.16	2.32
2136	3841	7.042335	CGGAGAGTGGAGACTTTTATAATTGT	58.958	38.462	0.00	0.00	30.16	2.71
2137	3842	7.010552	CGGAGAGTGGAGACTTTTATAATTGTG	59.989	40.741	0.00	0.00	30.16	3.33
2138	3843	7.201652	GGAGAGTGGAGACTTTTATAATTGTGC	60.202	40.741	0.00	0.00	30.16	4.57
2139	3844	7.398024	AGAGTGGAGACTTTTATAATTGTGCT	58.602	34.615	0.00	0.00	30.16	4.40
2140	3845	8.540388	AGAGTGGAGACTTTTATAATTGTGCTA	58.460	33.333	0.00	0.00	30.16	3.49
2141	3846	8.494016	AGTGGAGACTTTTATAATTGTGCTAC	57.506	34.615	0.00	0.00	0.00	3.58
2142	3847	8.322091	AGTGGAGACTTTTATAATTGTGCTACT	58.678	33.333	0.00	0.00	0.00	2.57
2143	3848	8.604890	GTGGAGACTTTTATAATTGTGCTACTC	58.395	37.037	0.00	0.00	0.00	2.59
2144	3849	8.318412	TGGAGACTTTTATAATTGTGCTACTCA	58.682	33.333	0.00	0.00	0.00	3.41
2145	3850	9.331282	GGAGACTTTTATAATTGTGCTACTCAT	57.669	33.333	0.00	0.00	0.00	2.90
2147	3852	9.890629	AGACTTTTATAATTGTGCTACTCATCA	57.109	29.630	0.00	0.00	0.00	3.07
2154	3859	6.839124	AATTGTGCTACTCATCAATTTCCA	57.161	33.333	0.00	0.00	35.18	3.53
2432	4369	9.372369	ACTACATCTACTTGCAGTTAATCTTTC	57.628	33.333	0.00	0.00	0.00	2.62
2443	4380	5.569413	CAGTTAATCTTTCCCCGATTTTCG	58.431	41.667	0.00	0.00	40.07	3.46
2457	4394	7.122055	TCCCCGATTTTCGTTTTACTACTAGTA	59.878	37.037	1.89	1.89	38.40	1.82
2496	4433	1.308783	TTGCCTGTGTGTTGCAACGA	61.309	50.000	23.79	10.87	39.86	3.85
2565	4502	9.557338	GTATACCTTACGCTCATTGTATTCTAG	57.443	37.037	0.00	0.00	0.00	2.43
2641	4578	8.942338	AAGTTTTCATTTAGTTGAGGTTTTCC	57.058	30.769	0.00	0.00	41.05	3.13
2690	4627	6.436843	AGGCAAAGAAACTTACGATATTGG	57.563	37.500	0.00	0.00	0.00	3.16
2737	4674	8.786826	TTGATTGAGTTAATGAATAAGTCCGT	57.213	30.769	0.00	0.00	41.43	4.69
2785	4722	1.688187	GCCCGGGTAAAGGAGGAGA	60.688	63.158	24.63	0.00	0.00	3.71
2791	4728	2.353803	CGGGTAAAGGAGGAGAGTTGTG	60.354	54.545	0.00	0.00	0.00	3.33
2792	4729	2.904434	GGGTAAAGGAGGAGAGTTGTGA	59.096	50.000	0.00	0.00	0.00	3.58
2801	4738	2.503356	AGGAGAGTTGTGATAGGCTTGG	59.497	50.000	0.00	0.00	0.00	3.61
2820	4757	1.002142	GGCGAGCCAACGTAAAAACTT	60.002	47.619	9.58	0.00	35.81	2.66
2826	4763	3.252458	AGCCAACGTAAAAACTTAGCCAG	59.748	43.478	0.00	0.00	0.00	4.85
2834	4771	6.370718	ACGTAAAAACTTAGCCAGTCTTATGG	59.629	38.462	0.00	0.00	43.72	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.387091	TAAGCGGCGCCTCTCCAA	61.387	61.111	30.40	8.46	0.00	3.53
1	2	4.143333	GTAAGCGGCGCCTCTCCA	62.143	66.667	30.40	10.86	0.00	3.86
2	3	3.447025	ATGTAAGCGGCGCCTCTCC	62.447	63.158	30.40	16.35	0.00	3.71
3	4	1.951631	GATGTAAGCGGCGCCTCTC	60.952	63.158	30.40	16.82	0.00	3.20
42	43	3.791320	TGGAAGAGGTCTAAGGATGTGT	58.209	45.455	0.00	0.00	0.00	3.72
69	70	0.947180	GCACCTCGTTTAAGCACCGA	60.947	55.000	0.00	0.00	0.00	4.69
135	136	7.021790	GGATGCTTAGCTACAACAAGTTAAAC	58.978	38.462	5.60	0.00	0.00	2.01
185	186	2.550639	GCCCACCAATGCATGAAAAACT	60.551	45.455	0.00	0.00	0.00	2.66
191	192	0.040058	AGAAGCCCACCAATGCATGA	59.960	50.000	0.00	0.00	0.00	3.07
237	238	2.719774	GAAACAATGCCAAGCGCGC	61.720	57.895	26.66	26.66	42.08	6.86
268	269	6.924913	TTAAGATGAGAGAGATGGGTATGG	57.075	41.667	0.00	0.00	0.00	2.74
272	273	7.079048	AGGTAATTAAGATGAGAGAGATGGGT	58.921	38.462	0.00	0.00	0.00	4.51
323	324	0.617935	TACATGTGCTAAGGCTGCCA	59.382	50.000	22.65	0.00	39.59	4.92
385	386	3.361917	CGTTAAAGTGTACAACCCGAACG	60.362	47.826	13.42	13.42	33.69	3.95
415	416	4.079710	GCGCGTGACTTTTACTCATTAAC	58.920	43.478	8.43	0.00	0.00	2.01
693	694	9.060347	GGCTCAAATGTCAAATATCTCAAGATA	57.940	33.333	2.34	2.34	40.85	1.98
838	2507	0.599558	CCTGATTGGCCTGTTGTGTG	59.400	55.000	3.32	0.00	0.00	3.82
954	2623	2.837326	GGTTGGGGTCTCGGGGTTT	61.837	63.158	0.00	0.00	0.00	3.27
1674	3343	0.108472	CTGAGATGAGCCGTGCAGAA	60.108	55.000	0.00	0.00	0.00	3.02
1934	3639	1.147153	GGGCACATCTGGGAGTAGC	59.853	63.158	0.00	0.00	0.00	3.58
1980	3685	0.803768	CGGGTGCACGAATCTCTCAG	60.804	60.000	11.45	0.00	35.47	3.35
2005	3710	2.159254	GCTGGAAAAACACTGCTCACAA	60.159	45.455	0.00	0.00	0.00	3.33
2030	3735	3.382803	GATCTGAGCTGCCCGCAGT	62.383	63.158	17.51	5.18	45.24	4.40
2054	3759	7.148557	GGAGAACATGAACTAGTACTTTTCAGC	60.149	40.741	19.02	11.49	32.91	4.26
2057	3762	8.834749	AAGGAGAACATGAACTAGTACTTTTC	57.165	34.615	0.00	5.35	0.00	2.29
2117	3822	8.494016	AGTAGCACAATTATAAAAGTCTCCAC	57.506	34.615	0.00	0.00	0.00	4.02
2128	3833	9.625747	TGGAAATTGATGAGTAGCACAATTATA	57.374	29.630	0.00	0.00	37.30	0.98
2129	3834	8.523915	TGGAAATTGATGAGTAGCACAATTAT	57.476	30.769	0.00	0.00	37.30	1.28
2130	3835	7.936496	TGGAAATTGATGAGTAGCACAATTA	57.064	32.000	0.00	0.00	37.30	1.40
2131	3836	6.839124	TGGAAATTGATGAGTAGCACAATT	57.161	33.333	0.00	0.00	38.58	2.32
2132	3837	6.839124	TTGGAAATTGATGAGTAGCACAAT	57.161	33.333	0.00	0.00	33.00	2.71
2133	3838	6.839124	ATTGGAAATTGATGAGTAGCACAA	57.161	33.333	0.00	0.00	0.00	3.33
2134	3839	6.839124	AATTGGAAATTGATGAGTAGCACA	57.161	33.333	0.00	0.00	0.00	4.57
2135	3840	7.864379	CCATAATTGGAAATTGATGAGTAGCAC	59.136	37.037	0.00	0.00	46.92	4.40
2136	3841	7.944061	CCATAATTGGAAATTGATGAGTAGCA	58.056	34.615	0.00	0.00	46.92	3.49
2152	3857	7.395190	TGTTCAATGACTCTTCCATAATTGG	57.605	36.000	0.00	0.00	45.15	3.16
2154	3859	9.865321	CATTTGTTCAATGACTCTTCCATAATT	57.135	29.630	0.00	0.00	44.78	1.40
2432	4369	6.101997	ACTAGTAGTAAAACGAAAATCGGGG	58.898	40.000	0.00	0.00	45.59	5.73
2457	4394	8.798402	CAGGCAAATAGCTAGTTCTAGTACTAT	58.202	37.037	9.40	0.00	44.79	2.12
2481	4418	0.304705	GTCCTCGTTGCAACACACAG	59.695	55.000	28.01	16.73	0.00	3.66
2590	4527	1.276989	GACTTCCACCACCCGTATTCA	59.723	52.381	0.00	0.00	0.00	2.57
2631	4568	5.076873	CCCAAATCACTTAGGAAAACCTCA	58.923	41.667	0.00	0.00	0.00	3.86
2641	4578	3.885297	CTGCCCATACCCAAATCACTTAG	59.115	47.826	0.00	0.00	0.00	2.18
2785	4722	0.613260	TCGCCAAGCCTATCACAACT	59.387	50.000	0.00	0.00	0.00	3.16
2801	4738	2.394545	AAGTTTTTACGTTGGCTCGC	57.605	45.000	0.00	0.00	0.00	5.03
2820	4757	5.163301	GGTTTCATCTCCATAAGACTGGCTA	60.163	44.000	0.00	0.00	36.65	3.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.