Multiple sequence alignment - TraesCS6D01G224400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G224400 chr6D 100.000 2465 0 0 1 2465 316257904 316255440 0.000000e+00 4553.0
1 TraesCS6D01G224400 chr5B 91.016 1703 100 15 376 2064 418310652 418312315 0.000000e+00 2248.0
2 TraesCS6D01G224400 chr5B 93.808 323 19 1 2058 2380 418312347 418312668 3.690000e-133 484.0
3 TraesCS6D01G224400 chr3B 95.577 407 16 2 2058 2464 400287413 400287009 0.000000e+00 651.0
4 TraesCS6D01G224400 chr2D 93.386 378 24 1 1 377 77289558 77289935 2.140000e-155 558.0
5 TraesCS6D01G224400 chr4D 93.369 377 24 1 1 376 340995740 340995364 7.700000e-155 556.0
6 TraesCS6D01G224400 chr4D 91.560 391 32 1 1 390 181712933 181713323 2.790000e-149 538.0
7 TraesCS6D01G224400 chr3D 93.122 378 25 1 1 377 134999258 134999635 9.960000e-154 553.0
8 TraesCS6D01G224400 chr3D 92.838 377 27 0 1 377 162751558 162751182 4.630000e-152 547.0
9 TraesCS6D01G224400 chr1D 93.298 373 24 1 10 381 249696487 249696859 1.290000e-152 549.0
10 TraesCS6D01G224400 chr1D 92.651 381 27 1 1 380 204806942 204807322 4.630000e-152 547.0
11 TraesCS6D01G224400 chr1D 92.632 380 27 1 1 379 377431250 377430871 1.670000e-151 545.0
12 TraesCS6D01G224400 chr5D 92.857 378 26 1 1 377 526795450 526795827 4.630000e-152 547.0
13 TraesCS6D01G224400 chr5D 71.717 594 144 21 1187 1767 444136637 444137219 7.100000e-31 145.0
14 TraesCS6D01G224400 chr5D 76.173 277 61 5 1700 1973 444137826 444138100 9.190000e-30 141.0
15 TraesCS6D01G224400 chr7B 96.875 32 1 0 1576 1607 595933183 595933152 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G224400 chr6D 316255440 316257904 2464 True 4553 4553 100.000 1 2465 1 chr6D.!!$R1 2464
1 TraesCS6D01G224400 chr5B 418310652 418312668 2016 False 1366 2248 92.412 376 2380 2 chr5B.!!$F1 2004

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.038892 GAGGTGTCGTGCTTTCGGTA 60.039 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2211 0.040246 GCTATCGGTACAGACGGAGC 60.04 60.0 0.0 4.42 38.21 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.198510 ACCCCGTCCCCTCTAGTT 58.801 61.111 0.00 0.00 0.00 2.24
18 19 1.472921 ACCCCGTCCCCTCTAGTTT 59.527 57.895 0.00 0.00 0.00 2.66
19 20 0.712380 ACCCCGTCCCCTCTAGTTTA 59.288 55.000 0.00 0.00 0.00 2.01
20 21 1.293153 ACCCCGTCCCCTCTAGTTTAT 59.707 52.381 0.00 0.00 0.00 1.40
21 22 1.969208 CCCCGTCCCCTCTAGTTTATC 59.031 57.143 0.00 0.00 0.00 1.75
22 23 1.969208 CCCGTCCCCTCTAGTTTATCC 59.031 57.143 0.00 0.00 0.00 2.59
23 24 2.425975 CCCGTCCCCTCTAGTTTATCCT 60.426 54.545 0.00 0.00 0.00 3.24
24 25 2.892215 CCGTCCCCTCTAGTTTATCCTC 59.108 54.545 0.00 0.00 0.00 3.71
25 26 2.892215 CGTCCCCTCTAGTTTATCCTCC 59.108 54.545 0.00 0.00 0.00 4.30
26 27 2.892215 GTCCCCTCTAGTTTATCCTCCG 59.108 54.545 0.00 0.00 0.00 4.63
27 28 1.619332 CCCCTCTAGTTTATCCTCCGC 59.381 57.143 0.00 0.00 0.00 5.54
28 29 1.619332 CCCTCTAGTTTATCCTCCGCC 59.381 57.143 0.00 0.00 0.00 6.13
29 30 2.317040 CCTCTAGTTTATCCTCCGCCA 58.683 52.381 0.00 0.00 0.00 5.69
30 31 2.900546 CCTCTAGTTTATCCTCCGCCAT 59.099 50.000 0.00 0.00 0.00 4.40
31 32 4.087182 CCTCTAGTTTATCCTCCGCCATA 58.913 47.826 0.00 0.00 0.00 2.74
32 33 4.158764 CCTCTAGTTTATCCTCCGCCATAG 59.841 50.000 0.00 0.00 0.00 2.23
33 34 4.737578 TCTAGTTTATCCTCCGCCATAGT 58.262 43.478 0.00 0.00 0.00 2.12
34 35 5.145564 TCTAGTTTATCCTCCGCCATAGTT 58.854 41.667 0.00 0.00 0.00 2.24
35 36 4.772886 AGTTTATCCTCCGCCATAGTTT 57.227 40.909 0.00 0.00 0.00 2.66
36 37 5.112129 AGTTTATCCTCCGCCATAGTTTT 57.888 39.130 0.00 0.00 0.00 2.43
37 38 5.123936 AGTTTATCCTCCGCCATAGTTTTC 58.876 41.667 0.00 0.00 0.00 2.29
38 39 2.240493 ATCCTCCGCCATAGTTTTCG 57.760 50.000 0.00 0.00 0.00 3.46
39 40 0.899720 TCCTCCGCCATAGTTTTCGT 59.100 50.000 0.00 0.00 0.00 3.85
40 41 2.101783 TCCTCCGCCATAGTTTTCGTA 58.898 47.619 0.00 0.00 0.00 3.43
41 42 2.100252 TCCTCCGCCATAGTTTTCGTAG 59.900 50.000 0.00 0.00 0.00 3.51
42 43 2.159142 CCTCCGCCATAGTTTTCGTAGT 60.159 50.000 0.00 0.00 0.00 2.73
43 44 2.858344 CTCCGCCATAGTTTTCGTAGTG 59.142 50.000 0.00 0.00 0.00 2.74
44 45 1.326548 CCGCCATAGTTTTCGTAGTGC 59.673 52.381 0.00 0.00 0.00 4.40
45 46 2.268298 CGCCATAGTTTTCGTAGTGCT 58.732 47.619 0.00 0.00 0.00 4.40
46 47 2.671396 CGCCATAGTTTTCGTAGTGCTT 59.329 45.455 0.00 0.00 0.00 3.91
47 48 3.861113 CGCCATAGTTTTCGTAGTGCTTA 59.139 43.478 0.00 0.00 0.00 3.09
48 49 4.026804 CGCCATAGTTTTCGTAGTGCTTAG 60.027 45.833 0.00 0.00 0.00 2.18
49 50 4.270325 GCCATAGTTTTCGTAGTGCTTAGG 59.730 45.833 0.00 0.00 0.00 2.69
50 51 4.270325 CCATAGTTTTCGTAGTGCTTAGGC 59.730 45.833 0.00 0.00 39.26 3.93
51 52 2.334838 AGTTTTCGTAGTGCTTAGGCG 58.665 47.619 0.00 0.00 42.25 5.52
52 53 2.029649 AGTTTTCGTAGTGCTTAGGCGA 60.030 45.455 0.00 0.00 42.25 5.54
53 54 2.728690 TTTCGTAGTGCTTAGGCGAA 57.271 45.000 0.00 0.00 42.25 4.70
54 55 2.273370 TTCGTAGTGCTTAGGCGAAG 57.727 50.000 2.68 2.68 42.25 3.79
68 69 3.274393 CGAAGCCCTACGGAGATTG 57.726 57.895 0.00 0.00 0.00 2.67
69 70 0.460311 CGAAGCCCTACGGAGATTGT 59.540 55.000 0.00 0.00 0.00 2.71
70 71 1.134788 CGAAGCCCTACGGAGATTGTT 60.135 52.381 0.00 0.00 0.00 2.83
71 72 2.552031 GAAGCCCTACGGAGATTGTTC 58.448 52.381 0.00 0.00 0.00 3.18
72 73 1.867363 AGCCCTACGGAGATTGTTCT 58.133 50.000 0.00 0.00 33.88 3.01
73 74 2.188817 AGCCCTACGGAGATTGTTCTT 58.811 47.619 0.00 0.00 30.30 2.52
74 75 2.168728 AGCCCTACGGAGATTGTTCTTC 59.831 50.000 0.00 0.00 30.30 2.87
75 76 2.093658 GCCCTACGGAGATTGTTCTTCA 60.094 50.000 0.00 0.00 30.30 3.02
76 77 3.522553 CCCTACGGAGATTGTTCTTCAC 58.477 50.000 0.00 0.00 30.30 3.18
77 78 3.522553 CCTACGGAGATTGTTCTTCACC 58.477 50.000 0.00 0.00 30.30 4.02
78 79 3.056107 CCTACGGAGATTGTTCTTCACCA 60.056 47.826 0.00 0.00 30.30 4.17
79 80 3.485463 ACGGAGATTGTTCTTCACCAA 57.515 42.857 0.00 0.00 30.30 3.67
80 81 3.139077 ACGGAGATTGTTCTTCACCAAC 58.861 45.455 0.00 0.00 30.30 3.77
81 82 3.138304 CGGAGATTGTTCTTCACCAACA 58.862 45.455 0.00 0.00 30.30 3.33
82 83 3.058914 CGGAGATTGTTCTTCACCAACAC 60.059 47.826 0.00 0.00 33.42 3.32
83 84 3.253432 GGAGATTGTTCTTCACCAACACC 59.747 47.826 0.00 0.00 33.42 4.16
84 85 3.882888 GAGATTGTTCTTCACCAACACCA 59.117 43.478 0.00 0.00 33.42 4.17
85 86 4.473444 AGATTGTTCTTCACCAACACCAT 58.527 39.130 0.00 0.00 33.42 3.55
86 87 4.520492 AGATTGTTCTTCACCAACACCATC 59.480 41.667 0.00 0.00 33.42 3.51
87 88 3.289407 TGTTCTTCACCAACACCATCA 57.711 42.857 0.00 0.00 0.00 3.07
88 89 2.948979 TGTTCTTCACCAACACCATCAC 59.051 45.455 0.00 0.00 0.00 3.06
89 90 2.270352 TCTTCACCAACACCATCACC 57.730 50.000 0.00 0.00 0.00 4.02
90 91 1.492599 TCTTCACCAACACCATCACCA 59.507 47.619 0.00 0.00 0.00 4.17
91 92 1.608590 CTTCACCAACACCATCACCAC 59.391 52.381 0.00 0.00 0.00 4.16
92 93 0.533978 TCACCAACACCATCACCACG 60.534 55.000 0.00 0.00 0.00 4.94
93 94 1.896660 ACCAACACCATCACCACGC 60.897 57.895 0.00 0.00 0.00 5.34
94 95 2.625823 CCAACACCATCACCACGCC 61.626 63.158 0.00 0.00 0.00 5.68
95 96 2.668212 AACACCATCACCACGCCG 60.668 61.111 0.00 0.00 0.00 6.46
96 97 3.469863 AACACCATCACCACGCCGT 62.470 57.895 0.00 0.00 0.00 5.68
97 98 3.118454 CACCATCACCACGCCGTC 61.118 66.667 0.00 0.00 0.00 4.79
98 99 4.735132 ACCATCACCACGCCGTCG 62.735 66.667 0.00 0.00 42.43 5.12
111 112 4.314096 CGTCGTGTTGTCGGAACT 57.686 55.556 0.00 0.00 0.00 3.01
112 113 2.130711 CGTCGTGTTGTCGGAACTC 58.869 57.895 0.00 0.00 0.00 3.01
113 114 0.593008 CGTCGTGTTGTCGGAACTCA 60.593 55.000 0.00 0.00 0.00 3.41
114 115 1.779569 GTCGTGTTGTCGGAACTCAT 58.220 50.000 0.00 0.00 0.00 2.90
115 116 1.719780 GTCGTGTTGTCGGAACTCATC 59.280 52.381 0.00 0.00 0.00 2.92
116 117 1.611977 TCGTGTTGTCGGAACTCATCT 59.388 47.619 0.00 0.00 0.00 2.90
117 118 2.815503 TCGTGTTGTCGGAACTCATCTA 59.184 45.455 0.00 0.00 0.00 1.98
118 119 2.915463 CGTGTTGTCGGAACTCATCTAC 59.085 50.000 0.00 0.00 0.00 2.59
119 120 3.366070 CGTGTTGTCGGAACTCATCTACT 60.366 47.826 0.00 0.00 0.00 2.57
120 121 4.142752 CGTGTTGTCGGAACTCATCTACTA 60.143 45.833 0.00 0.00 0.00 1.82
121 122 5.094134 GTGTTGTCGGAACTCATCTACTAC 58.906 45.833 0.00 0.00 0.00 2.73
122 123 5.008331 TGTTGTCGGAACTCATCTACTACT 58.992 41.667 0.00 0.00 0.00 2.57
123 124 5.475909 TGTTGTCGGAACTCATCTACTACTT 59.524 40.000 0.00 0.00 0.00 2.24
124 125 5.814764 TGTCGGAACTCATCTACTACTTC 57.185 43.478 0.00 0.00 0.00 3.01
125 126 4.331992 TGTCGGAACTCATCTACTACTTCG 59.668 45.833 0.00 0.00 0.00 3.79
126 127 3.311871 TCGGAACTCATCTACTACTTCGC 59.688 47.826 0.00 0.00 0.00 4.70
127 128 3.548415 CGGAACTCATCTACTACTTCGCC 60.548 52.174 0.00 0.00 0.00 5.54
128 129 3.243468 GGAACTCATCTACTACTTCGCCC 60.243 52.174 0.00 0.00 0.00 6.13
129 130 2.308690 ACTCATCTACTACTTCGCCCC 58.691 52.381 0.00 0.00 0.00 5.80
130 131 2.091775 ACTCATCTACTACTTCGCCCCT 60.092 50.000 0.00 0.00 0.00 4.79
131 132 2.554893 CTCATCTACTACTTCGCCCCTC 59.445 54.545 0.00 0.00 0.00 4.30
132 133 2.175069 TCATCTACTACTTCGCCCCTCT 59.825 50.000 0.00 0.00 0.00 3.69
133 134 2.822707 TCTACTACTTCGCCCCTCTT 57.177 50.000 0.00 0.00 0.00 2.85
134 135 2.376109 TCTACTACTTCGCCCCTCTTG 58.624 52.381 0.00 0.00 0.00 3.02
135 136 0.822164 TACTACTTCGCCCCTCTTGC 59.178 55.000 0.00 0.00 0.00 4.01
136 137 0.905337 ACTACTTCGCCCCTCTTGCT 60.905 55.000 0.00 0.00 0.00 3.91
137 138 0.460987 CTACTTCGCCCCTCTTGCTG 60.461 60.000 0.00 0.00 0.00 4.41
138 139 1.899437 TACTTCGCCCCTCTTGCTGG 61.899 60.000 0.00 0.00 0.00 4.85
139 140 2.927856 TTCGCCCCTCTTGCTGGA 60.928 61.111 0.00 0.00 0.00 3.86
140 141 2.262774 CTTCGCCCCTCTTGCTGGAT 62.263 60.000 0.00 0.00 0.00 3.41
141 142 2.203126 CGCCCCTCTTGCTGGATC 60.203 66.667 0.00 0.00 0.00 3.36
142 143 3.001514 GCCCCTCTTGCTGGATCA 58.998 61.111 0.00 0.00 0.00 2.92
143 144 1.304282 GCCCCTCTTGCTGGATCAA 59.696 57.895 0.00 0.00 0.00 2.57
144 145 0.750911 GCCCCTCTTGCTGGATCAAG 60.751 60.000 0.00 0.00 43.53 3.02
149 150 2.119801 TCTTGCTGGATCAAGAAGGC 57.880 50.000 0.00 0.00 46.56 4.35
150 151 0.731417 CTTGCTGGATCAAGAAGGCG 59.269 55.000 0.00 0.00 44.61 5.52
151 152 0.324614 TTGCTGGATCAAGAAGGCGA 59.675 50.000 0.00 0.00 0.00 5.54
152 153 0.107993 TGCTGGATCAAGAAGGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
153 154 0.813210 GCTGGATCAAGAAGGCGAGG 60.813 60.000 0.00 0.00 0.00 4.63
154 155 0.826715 CTGGATCAAGAAGGCGAGGA 59.173 55.000 0.00 0.00 0.00 3.71
155 156 0.537188 TGGATCAAGAAGGCGAGGAC 59.463 55.000 0.00 0.00 0.00 3.85
156 157 0.528684 GGATCAAGAAGGCGAGGACG 60.529 60.000 0.00 0.00 42.93 4.79
157 158 0.173708 GATCAAGAAGGCGAGGACGT 59.826 55.000 0.00 0.00 41.98 4.34
158 159 0.173708 ATCAAGAAGGCGAGGACGTC 59.826 55.000 7.13 7.13 45.02 4.34
167 168 4.700037 GAGGACGTCATCGAGCTG 57.300 61.111 18.91 0.00 40.62 4.24
168 169 2.099143 GAGGACGTCATCGAGCTGA 58.901 57.895 18.91 0.00 40.62 4.26
169 170 0.452184 GAGGACGTCATCGAGCTGAA 59.548 55.000 18.91 0.00 40.62 3.02
170 171 0.171455 AGGACGTCATCGAGCTGAAC 59.829 55.000 18.91 0.00 40.62 3.18
171 172 1.134530 GGACGTCATCGAGCTGAACG 61.135 60.000 18.91 0.00 40.62 3.95
172 173 0.454620 GACGTCATCGAGCTGAACGT 60.455 55.000 11.55 12.62 40.62 3.99
173 174 0.729478 ACGTCATCGAGCTGAACGTG 60.729 55.000 12.23 3.66 40.62 4.49
174 175 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
175 176 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
176 177 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
177 178 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
178 179 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
179 180 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
180 181 1.010935 CGAGCTGAACGTGTGCTGAT 61.011 55.000 13.62 0.00 37.16 2.90
181 182 0.718343 GAGCTGAACGTGTGCTGATC 59.282 55.000 13.62 4.33 37.16 2.92
182 183 1.010935 AGCTGAACGTGTGCTGATCG 61.011 55.000 8.99 0.00 35.54 3.69
183 184 1.417592 CTGAACGTGTGCTGATCGC 59.582 57.895 0.00 3.07 39.77 4.58
184 185 2.271024 CTGAACGTGTGCTGATCGCG 62.271 60.000 0.00 0.00 43.27 5.87
185 186 3.071459 GAACGTGTGCTGATCGCGG 62.071 63.158 6.13 0.00 43.27 6.46
186 187 3.567478 AACGTGTGCTGATCGCGGA 62.567 57.895 6.13 0.00 43.27 5.54
187 188 3.250323 CGTGTGCTGATCGCGGAG 61.250 66.667 6.13 0.74 43.27 4.63
188 189 2.887568 GTGTGCTGATCGCGGAGG 60.888 66.667 6.13 0.00 43.27 4.30
189 190 3.381983 TGTGCTGATCGCGGAGGT 61.382 61.111 6.13 0.00 43.27 3.85
190 191 2.887568 GTGCTGATCGCGGAGGTG 60.888 66.667 6.13 0.00 43.27 4.00
191 192 3.381983 TGCTGATCGCGGAGGTGT 61.382 61.111 6.13 0.00 43.27 4.16
192 193 2.583593 GCTGATCGCGGAGGTGTC 60.584 66.667 6.13 0.00 0.00 3.67
193 194 2.278206 CTGATCGCGGAGGTGTCG 60.278 66.667 6.13 0.00 0.00 4.35
194 195 3.052620 CTGATCGCGGAGGTGTCGT 62.053 63.158 6.13 0.00 0.00 4.34
195 196 2.579787 GATCGCGGAGGTGTCGTG 60.580 66.667 6.13 0.00 39.20 4.35
196 197 4.796231 ATCGCGGAGGTGTCGTGC 62.796 66.667 6.13 0.00 37.94 5.34
199 200 2.665185 GCGGAGGTGTCGTGCTTT 60.665 61.111 0.00 0.00 0.00 3.51
200 201 2.668280 GCGGAGGTGTCGTGCTTTC 61.668 63.158 0.00 0.00 0.00 2.62
201 202 2.372690 CGGAGGTGTCGTGCTTTCG 61.373 63.158 0.00 0.00 0.00 3.46
202 203 2.027625 GGAGGTGTCGTGCTTTCGG 61.028 63.158 0.00 0.00 0.00 4.30
203 204 1.300697 GAGGTGTCGTGCTTTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
204 205 0.038892 GAGGTGTCGTGCTTTCGGTA 60.039 55.000 0.00 0.00 0.00 4.02
205 206 0.319297 AGGTGTCGTGCTTTCGGTAC 60.319 55.000 0.00 0.00 0.00 3.34
206 207 0.319297 GGTGTCGTGCTTTCGGTACT 60.319 55.000 0.00 0.00 0.00 2.73
207 208 1.068333 GGTGTCGTGCTTTCGGTACTA 60.068 52.381 0.00 0.00 0.00 1.82
208 209 2.248487 GTGTCGTGCTTTCGGTACTAG 58.752 52.381 0.00 0.00 0.00 2.57
209 210 1.200716 TGTCGTGCTTTCGGTACTAGG 59.799 52.381 0.00 0.00 0.00 3.02
210 211 1.470098 GTCGTGCTTTCGGTACTAGGA 59.530 52.381 0.00 0.00 0.00 2.94
211 212 2.098770 GTCGTGCTTTCGGTACTAGGAT 59.901 50.000 0.00 0.00 0.00 3.24
212 213 2.357009 TCGTGCTTTCGGTACTAGGATC 59.643 50.000 0.00 0.00 0.00 3.36
213 214 2.728922 GTGCTTTCGGTACTAGGATCG 58.271 52.381 0.00 0.00 0.00 3.69
214 215 2.357009 GTGCTTTCGGTACTAGGATCGA 59.643 50.000 6.12 6.12 0.00 3.59
215 216 3.004524 GTGCTTTCGGTACTAGGATCGAT 59.995 47.826 12.01 0.00 0.00 3.59
216 217 3.635373 TGCTTTCGGTACTAGGATCGATT 59.365 43.478 12.01 0.00 0.00 3.34
217 218 3.982058 GCTTTCGGTACTAGGATCGATTG 59.018 47.826 12.01 8.48 0.00 2.67
218 219 4.261489 GCTTTCGGTACTAGGATCGATTGA 60.261 45.833 12.01 0.00 0.00 2.57
219 220 5.735354 GCTTTCGGTACTAGGATCGATTGAA 60.735 44.000 12.01 1.88 0.00 2.69
220 221 6.401047 TTTCGGTACTAGGATCGATTGAAT 57.599 37.500 12.01 0.00 0.00 2.57
221 222 5.624344 TCGGTACTAGGATCGATTGAATC 57.376 43.478 6.12 0.00 0.00 2.52
230 231 3.673406 CGATTGAATCGCGAAGACG 57.327 52.632 15.24 9.84 46.55 4.18
231 232 0.914551 CGATTGAATCGCGAAGACGT 59.085 50.000 15.24 0.00 46.55 4.34
232 233 1.320555 CGATTGAATCGCGAAGACGTT 59.679 47.619 15.24 1.06 46.55 3.99
233 234 2.592215 CGATTGAATCGCGAAGACGTTC 60.592 50.000 15.24 12.91 46.55 3.95
245 246 4.802664 GAAGACGTTCGACTACATCAAC 57.197 45.455 0.00 0.00 0.00 3.18
246 247 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
247 248 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
248 249 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
249 250 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
250 251 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
251 252 0.179181 TCGACTACATCAACCGCGTC 60.179 55.000 4.92 0.00 0.00 5.19
252 253 0.455464 CGACTACATCAACCGCGTCA 60.455 55.000 4.92 0.00 0.00 4.35
253 254 0.989890 GACTACATCAACCGCGTCAC 59.010 55.000 4.92 0.00 0.00 3.67
254 255 0.601558 ACTACATCAACCGCGTCACT 59.398 50.000 4.92 0.00 0.00 3.41
255 256 1.000506 ACTACATCAACCGCGTCACTT 59.999 47.619 4.92 0.00 0.00 3.16
256 257 1.390123 CTACATCAACCGCGTCACTTG 59.610 52.381 4.92 0.90 0.00 3.16
257 258 0.249699 ACATCAACCGCGTCACTTGA 60.250 50.000 4.92 6.78 0.00 3.02
258 259 0.163788 CATCAACCGCGTCACTTGAC 59.836 55.000 4.92 0.00 41.47 3.18
266 267 2.853914 GTCACTTGACGCTTCCGC 59.146 61.111 0.00 0.00 38.22 5.54
267 268 1.664965 GTCACTTGACGCTTCCGCT 60.665 57.895 0.00 0.00 38.22 5.52
268 269 1.069090 TCACTTGACGCTTCCGCTT 59.931 52.632 0.00 0.00 38.22 4.68
269 270 0.315886 TCACTTGACGCTTCCGCTTA 59.684 50.000 0.00 0.00 38.22 3.09
270 271 0.438830 CACTTGACGCTTCCGCTTAC 59.561 55.000 0.00 0.00 38.22 2.34
271 272 1.007336 ACTTGACGCTTCCGCTTACG 61.007 55.000 0.00 0.00 38.22 3.18
295 296 1.896220 ACGAGGGTACGTAGACAACA 58.104 50.000 0.00 0.00 44.72 3.33
296 297 1.537202 ACGAGGGTACGTAGACAACAC 59.463 52.381 0.00 0.00 44.72 3.32
297 298 1.808945 CGAGGGTACGTAGACAACACT 59.191 52.381 0.00 0.00 0.00 3.55
298 299 2.159599 CGAGGGTACGTAGACAACACTC 60.160 54.545 7.48 7.48 39.74 3.51
299 300 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
300 301 4.256920 GAGGGTACGTAGACAACACTCTA 58.743 47.826 9.87 0.00 39.95 2.43
301 302 4.006319 AGGGTACGTAGACAACACTCTAC 58.994 47.826 0.00 0.00 39.50 2.59
302 303 3.127721 GGGTACGTAGACAACACTCTACC 59.872 52.174 0.00 0.00 39.66 3.18
303 304 3.127721 GGTACGTAGACAACACTCTACCC 59.872 52.174 0.00 0.00 39.66 3.69
304 305 3.151912 ACGTAGACAACACTCTACCCT 57.848 47.619 0.00 0.00 39.66 4.34
305 306 3.080319 ACGTAGACAACACTCTACCCTC 58.920 50.000 0.00 0.00 39.66 4.30
306 307 3.244840 ACGTAGACAACACTCTACCCTCT 60.245 47.826 0.00 0.00 39.66 3.69
307 308 3.757493 CGTAGACAACACTCTACCCTCTT 59.243 47.826 1.66 0.00 39.66 2.85
308 309 4.379603 CGTAGACAACACTCTACCCTCTTG 60.380 50.000 1.66 0.00 39.66 3.02
309 310 3.577919 AGACAACACTCTACCCTCTTGT 58.422 45.455 0.00 0.00 0.00 3.16
310 311 3.967987 AGACAACACTCTACCCTCTTGTT 59.032 43.478 0.00 0.00 0.00 2.83
312 313 2.808543 CAACACTCTACCCTCTTGTTGC 59.191 50.000 0.00 0.00 40.28 4.17
313 314 2.330216 ACACTCTACCCTCTTGTTGCT 58.670 47.619 0.00 0.00 0.00 3.91
314 315 3.507411 ACACTCTACCCTCTTGTTGCTA 58.493 45.455 0.00 0.00 0.00 3.49
315 316 4.097418 ACACTCTACCCTCTTGTTGCTAT 58.903 43.478 0.00 0.00 0.00 2.97
316 317 4.081420 ACACTCTACCCTCTTGTTGCTATG 60.081 45.833 0.00 0.00 0.00 2.23
317 318 3.118592 ACTCTACCCTCTTGTTGCTATGC 60.119 47.826 0.00 0.00 0.00 3.14
318 319 2.837591 TCTACCCTCTTGTTGCTATGCA 59.162 45.455 0.00 0.00 36.47 3.96
319 320 2.814805 ACCCTCTTGTTGCTATGCAT 57.185 45.000 3.79 3.79 38.76 3.96
320 321 2.648059 ACCCTCTTGTTGCTATGCATC 58.352 47.619 0.19 0.00 38.76 3.91
321 322 2.025981 ACCCTCTTGTTGCTATGCATCA 60.026 45.455 0.19 0.00 38.76 3.07
322 323 2.357009 CCCTCTTGTTGCTATGCATCAC 59.643 50.000 0.19 0.00 37.87 3.06
323 324 2.357009 CCTCTTGTTGCTATGCATCACC 59.643 50.000 0.19 0.00 37.87 4.02
324 325 3.011818 CTCTTGTTGCTATGCATCACCA 58.988 45.455 0.19 0.00 37.87 4.17
325 326 3.623703 TCTTGTTGCTATGCATCACCAT 58.376 40.909 0.19 0.00 37.87 3.55
326 327 3.379057 TCTTGTTGCTATGCATCACCATG 59.621 43.478 0.19 0.00 37.87 3.66
327 328 3.002038 TGTTGCTATGCATCACCATGA 57.998 42.857 0.19 0.00 38.76 3.07
328 329 3.558033 TGTTGCTATGCATCACCATGAT 58.442 40.909 0.19 0.00 38.76 2.45
329 330 3.566742 TGTTGCTATGCATCACCATGATC 59.433 43.478 0.19 0.00 38.76 2.92
330 331 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
331 332 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
332 333 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
333 334 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
334 335 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
335 336 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
336 337 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
337 338 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
338 339 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
339 340 1.159285 CACCATGATCTTGCGTGTGT 58.841 50.000 15.81 3.20 0.00 3.72
340 341 1.135888 CACCATGATCTTGCGTGTGTG 60.136 52.381 15.81 9.68 0.00 3.82
341 342 1.159285 CCATGATCTTGCGTGTGTGT 58.841 50.000 3.07 0.00 0.00 3.72
342 343 2.289382 ACCATGATCTTGCGTGTGTGTA 60.289 45.455 3.07 0.00 0.00 2.90
343 344 2.349580 CCATGATCTTGCGTGTGTGTAG 59.650 50.000 3.07 0.00 0.00 2.74
344 345 2.078849 TGATCTTGCGTGTGTGTAGG 57.921 50.000 0.00 0.00 0.00 3.18
345 346 1.616374 TGATCTTGCGTGTGTGTAGGA 59.384 47.619 0.00 0.00 0.00 2.94
346 347 2.233676 TGATCTTGCGTGTGTGTAGGAT 59.766 45.455 0.00 0.00 0.00 3.24
347 348 2.831685 TCTTGCGTGTGTGTAGGATT 57.168 45.000 0.00 0.00 0.00 3.01
348 349 3.120321 TCTTGCGTGTGTGTAGGATTT 57.880 42.857 0.00 0.00 0.00 2.17
349 350 3.472652 TCTTGCGTGTGTGTAGGATTTT 58.527 40.909 0.00 0.00 0.00 1.82
350 351 3.880490 TCTTGCGTGTGTGTAGGATTTTT 59.120 39.130 0.00 0.00 0.00 1.94
372 373 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
373 374 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
374 375 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
422 423 3.177228 AGCCCTCAGTTTACAGAGACAT 58.823 45.455 4.10 0.00 32.00 3.06
449 450 3.883830 GATGTGTGTCATCTGTCTCCT 57.116 47.619 0.00 0.00 46.64 3.69
465 466 5.126067 TGTCTCCTTTTCAGTCCTTTTCAG 58.874 41.667 0.00 0.00 0.00 3.02
513 514 1.984570 CGAGAGGGTTGAGGCAGGA 60.985 63.158 0.00 0.00 0.00 3.86
515 516 1.614824 AGAGGGTTGAGGCAGGAGG 60.615 63.158 0.00 0.00 0.00 4.30
591 592 4.539870 CTTAAAGCACAATATGGCATCCG 58.460 43.478 1.65 0.00 0.00 4.18
623 633 1.973812 GCAACTTCAGCCCCTCACC 60.974 63.158 0.00 0.00 0.00 4.02
635 645 2.094675 CCCCTCACCTGTTATTTGCTG 58.905 52.381 0.00 0.00 0.00 4.41
638 648 4.385199 CCCCTCACCTGTTATTTGCTGATA 60.385 45.833 0.00 0.00 0.00 2.15
669 680 0.250295 TCTTTGAGGCCACCGTTGAG 60.250 55.000 5.01 0.00 0.00 3.02
691 702 1.153349 GCCACCCGAGTCCAAGATC 60.153 63.158 0.00 0.00 0.00 2.75
713 724 6.932356 TCTTCTGAGGAAATATTGTGATGC 57.068 37.500 0.00 0.00 0.00 3.91
736 747 4.517285 GTCTGGACAAAGGATCAATGCTA 58.483 43.478 0.00 0.00 0.00 3.49
766 777 4.457257 CCTCTGTTTTCTTTAGCAAGGGAG 59.543 45.833 0.00 0.00 0.00 4.30
770 781 5.197451 TGTTTTCTTTAGCAAGGGAGTGAA 58.803 37.500 0.00 0.00 0.00 3.18
782 793 4.927978 AGGGAGTGAATGAGAATACTCG 57.072 45.455 0.00 0.00 45.25 4.18
796 807 9.722056 ATGAGAATACTCGCAATGAAATAAAAC 57.278 29.630 0.00 0.00 45.25 2.43
801 812 8.841444 ATACTCGCAATGAAATAAAACATGTC 57.159 30.769 0.00 0.00 0.00 3.06
804 815 7.120579 ACTCGCAATGAAATAAAACATGTCCTA 59.879 33.333 0.00 0.00 0.00 2.94
807 818 7.218773 CGCAATGAAATAAAACATGTCCTACAG 59.781 37.037 0.00 0.00 0.00 2.74
811 822 9.920946 ATGAAATAAAACATGTCCTACAGGTAT 57.079 29.630 0.00 0.00 42.82 2.73
821 832 7.565398 ACATGTCCTACAGGTATAGAATGAAGT 59.435 37.037 0.00 0.00 41.73 3.01
851 862 4.401519 GGAAAAATACTTGGGCCTACCTTC 59.598 45.833 4.53 0.00 41.11 3.46
856 867 0.984230 CTTGGGCCTACCTTCTGACA 59.016 55.000 4.53 0.00 41.11 3.58
860 871 1.204146 GGCCTACCTTCTGACATGGA 58.796 55.000 0.00 0.00 0.00 3.41
877 888 6.178607 ACATGGAAAAATCAAAAGAAGGCT 57.821 33.333 0.00 0.00 0.00 4.58
878 889 7.015098 TGACATGGAAAAATCAAAAGAAGGCTA 59.985 33.333 0.00 0.00 0.00 3.93
921 932 1.464734 TTTGGAAACGTGTGCAAGGA 58.535 45.000 12.70 0.00 29.97 3.36
937 948 3.539604 CAAGGATGGATGGAGAAGTGTC 58.460 50.000 0.00 0.00 0.00 3.67
942 953 4.590647 GGATGGATGGAGAAGTGTCTATCA 59.409 45.833 4.57 0.00 36.42 2.15
948 959 2.102252 GGAGAAGTGTCTATCAGCTGGG 59.898 54.545 15.13 4.92 32.80 4.45
975 986 4.065789 AGGAAGTTTTGATCAAGTCCGTC 58.934 43.478 8.41 8.04 0.00 4.79
1025 1036 2.231478 CCTGTTTCAAGCTACCGAGAGA 59.769 50.000 0.00 0.00 0.00 3.10
1029 1040 4.220821 TGTTTCAAGCTACCGAGAGATCTT 59.779 41.667 0.00 0.00 0.00 2.40
1043 1054 8.258007 ACCGAGAGATCTTTGTGAACATATTAA 58.742 33.333 0.00 0.00 0.00 1.40
1121 1132 3.709653 TGGGTATCCTGGAACACTATGAC 59.290 47.826 0.00 0.00 0.00 3.06
1139 1150 2.230992 TGACGAAGCCAAAATTCATGGG 59.769 45.455 11.13 0.00 38.44 4.00
1146 1157 1.758862 CCAAAATTCATGGGAGGGCTC 59.241 52.381 0.00 0.00 34.15 4.70
1161 1172 1.369625 GGCTCGGATTTCGTGACATT 58.630 50.000 0.00 0.00 39.89 2.71
1178 1189 7.120579 TCGTGACATTGAGCTATTTAATTTGGT 59.879 33.333 0.00 0.00 0.00 3.67
1191 1202 4.921847 TTGGTGTTGCTTGCGCGC 62.922 61.111 27.26 27.26 39.65 6.86
1244 1255 3.505680 ACACTCAGTGCTAGAGTTCTCAG 59.494 47.826 4.13 0.08 43.47 3.35
1257 1268 5.410602 AGAGTTCTCAGGGCCAGATATTAT 58.589 41.667 6.18 0.00 0.00 1.28
1287 1298 0.835941 ACCTCCTGGATGCTAGCTTG 59.164 55.000 17.23 0.00 37.04 4.01
1293 1304 0.394192 TGGATGCTAGCTTGGGATCG 59.606 55.000 17.23 0.00 33.33 3.69
1350 1361 4.443034 GGAAGAGACATATTAGCGTTGGGT 60.443 45.833 0.00 0.00 0.00 4.51
1361 1372 1.199097 AGCGTTGGGTTTAATCAAGCG 59.801 47.619 0.00 0.00 33.24 4.68
1372 1383 5.490213 GTTTAATCAAGCGTATCGGTTCTG 58.510 41.667 3.68 0.00 45.71 3.02
1379 1390 1.841450 CGTATCGGTTCTGGAGCTTC 58.159 55.000 0.00 0.00 0.00 3.86
1426 1438 0.451783 GCCAGGGACTACAAATTGCG 59.548 55.000 0.00 0.00 36.02 4.85
1440 1452 1.660560 ATTGCGACCAATCTGCTGCC 61.661 55.000 0.00 0.00 37.04 4.85
1442 1454 3.197790 CGACCAATCTGCTGCCGG 61.198 66.667 0.00 0.00 0.00 6.13
1519 1532 2.739885 ACAGACAAGTGCTAGCTGAG 57.260 50.000 17.23 5.92 0.00 3.35
1541 1554 4.662278 GCACCTTAATGCCCCTGATATTA 58.338 43.478 0.00 0.00 39.86 0.98
1575 1589 1.868713 TTCCGGTAAGCATGAGGGTA 58.131 50.000 0.00 0.00 0.00 3.69
1576 1590 1.117150 TCCGGTAAGCATGAGGGTAC 58.883 55.000 0.00 0.00 0.00 3.34
1623 1637 0.543174 ACAAGCGAGGGGTCTTCTCT 60.543 55.000 0.00 0.00 0.00 3.10
1645 1659 3.119280 TGTTCGATCTGCTTACCGAATGA 60.119 43.478 0.00 0.00 41.96 2.57
1646 1660 4.051922 GTTCGATCTGCTTACCGAATGAT 58.948 43.478 0.00 0.00 41.96 2.45
1670 1684 3.119137 TCCGCGATCAAATCTCAAAGAGA 60.119 43.478 8.23 0.00 43.20 3.10
1679 1693 6.595682 TCAAATCTCAAAGAGAAGACTGGTT 58.404 36.000 0.29 0.00 42.27 3.67
1721 1735 7.497579 TCACTCAAATCAACAAGCTACTAAACA 59.502 33.333 0.00 0.00 0.00 2.83
1800 1815 1.202698 GGTTGGCACACACTTCTCTCT 60.203 52.381 0.00 0.00 39.29 3.10
1801 1816 1.869767 GTTGGCACACACTTCTCTCTG 59.130 52.381 0.00 0.00 39.29 3.35
1802 1817 1.123077 TGGCACACACTTCTCTCTGT 58.877 50.000 0.00 0.00 0.00 3.41
1803 1818 2.316108 TGGCACACACTTCTCTCTGTA 58.684 47.619 0.00 0.00 0.00 2.74
1804 1819 2.035961 TGGCACACACTTCTCTCTGTAC 59.964 50.000 0.00 0.00 0.00 2.90
1805 1820 2.297597 GGCACACACTTCTCTCTGTACT 59.702 50.000 0.00 0.00 0.00 2.73
1806 1821 3.312828 GCACACACTTCTCTCTGTACTG 58.687 50.000 0.00 0.00 0.00 2.74
1807 1822 3.858877 GCACACACTTCTCTCTGTACTGG 60.859 52.174 0.00 0.00 0.00 4.00
1808 1823 3.570125 CACACACTTCTCTCTGTACTGGA 59.430 47.826 0.00 0.00 0.00 3.86
1809 1824 4.219507 CACACACTTCTCTCTGTACTGGAT 59.780 45.833 0.00 0.00 0.00 3.41
1810 1825 4.461081 ACACACTTCTCTCTGTACTGGATC 59.539 45.833 0.00 0.00 0.00 3.36
1811 1826 4.460731 CACACTTCTCTCTGTACTGGATCA 59.539 45.833 0.00 0.00 0.00 2.92
1812 1827 4.704540 ACACTTCTCTCTGTACTGGATCAG 59.295 45.833 0.00 0.00 37.52 2.90
1814 1829 5.883115 CACTTCTCTCTGTACTGGATCAGTA 59.117 44.000 3.89 3.89 43.46 2.74
1822 1837 1.485124 ACTGGATCAGTACGCCATGA 58.515 50.000 0.00 0.00 43.46 3.07
1823 1838 1.831106 ACTGGATCAGTACGCCATGAA 59.169 47.619 0.00 0.00 43.46 2.57
1824 1839 2.205074 CTGGATCAGTACGCCATGAAC 58.795 52.381 0.00 0.00 0.00 3.18
1825 1840 1.552792 TGGATCAGTACGCCATGAACA 59.447 47.619 0.00 0.00 0.00 3.18
1838 1853 2.886523 CCATGAACAACATATGGCGGAT 59.113 45.455 7.80 0.00 37.46 4.18
1882 1897 5.716094 CAATTCTGATGTTGATTCTTGGCA 58.284 37.500 0.00 0.00 0.00 4.92
1888 1903 3.500448 TGTTGATTCTTGGCACCACTA 57.500 42.857 0.00 0.00 0.00 2.74
1893 1908 3.193267 TGATTCTTGGCACCACTATTTGC 59.807 43.478 0.00 0.00 38.06 3.68
1902 1917 3.673323 GCACCACTATTTGCTAAACTGCC 60.673 47.826 0.00 0.00 35.74 4.85
1983 1998 4.510038 AACAGGAGTGATGATGCAAAAC 57.490 40.909 0.00 0.00 0.00 2.43
1984 1999 3.759581 ACAGGAGTGATGATGCAAAACT 58.240 40.909 0.00 0.00 0.00 2.66
1985 2000 4.910195 ACAGGAGTGATGATGCAAAACTA 58.090 39.130 0.00 0.00 0.00 2.24
1986 2001 5.503927 ACAGGAGTGATGATGCAAAACTAT 58.496 37.500 0.00 0.00 0.00 2.12
1987 2002 6.653020 ACAGGAGTGATGATGCAAAACTATA 58.347 36.000 0.00 0.00 0.00 1.31
1988 2003 7.285566 ACAGGAGTGATGATGCAAAACTATAT 58.714 34.615 0.00 0.00 0.00 0.86
1989 2004 7.228108 ACAGGAGTGATGATGCAAAACTATATG 59.772 37.037 0.00 0.00 0.00 1.78
1990 2005 7.443272 CAGGAGTGATGATGCAAAACTATATGA 59.557 37.037 0.00 0.00 0.00 2.15
1991 2006 8.162085 AGGAGTGATGATGCAAAACTATATGAT 58.838 33.333 0.00 0.00 0.00 2.45
1992 2007 8.235226 GGAGTGATGATGCAAAACTATATGATG 58.765 37.037 0.00 0.00 0.00 3.07
1993 2008 7.591165 AGTGATGATGCAAAACTATATGATGC 58.409 34.615 0.00 0.00 37.52 3.91
2041 2056 3.180507 AGACATTGAAGGAGAAGGAGCT 58.819 45.455 0.00 0.00 0.00 4.09
2043 2058 2.026449 ACATTGAAGGAGAAGGAGCTGG 60.026 50.000 0.00 0.00 0.00 4.85
2045 2060 0.837691 TGAAGGAGAAGGAGCTGGCA 60.838 55.000 0.00 0.00 0.00 4.92
2046 2061 0.545646 GAAGGAGAAGGAGCTGGCAT 59.454 55.000 0.00 0.00 0.00 4.40
2055 2070 1.593265 GAGCTGGCATGGGTTTTGG 59.407 57.895 0.00 0.00 0.00 3.28
2071 2123 6.828273 TGGGTTTTGGTTACTATGATGATCAG 59.172 38.462 0.09 0.00 0.00 2.90
2124 2176 3.995636 TCAATAGGTACCTTGAGGAGCT 58.004 45.455 22.11 5.44 38.94 4.09
2132 2184 1.004044 ACCTTGAGGAGCTGGACATTG 59.996 52.381 3.59 0.00 38.94 2.82
2137 2189 0.990374 AGGAGCTGGACATTGCTTCT 59.010 50.000 0.00 0.00 40.08 2.85
2210 2262 1.082194 AGTGGATTCCCCCTTCAGGTA 59.918 52.381 0.00 0.00 0.00 3.08
2231 2283 1.028130 TGCGGCAAAACTGAATGTCA 58.972 45.000 0.00 0.00 0.00 3.58
2272 2324 1.276421 GGAGACAAAGGAGTAGCAGCA 59.724 52.381 0.00 0.00 0.00 4.41
2328 2380 3.815401 GGTGCATCGGCTCTTGTTATTAT 59.185 43.478 0.00 0.00 41.91 1.28
2330 2382 5.120830 GGTGCATCGGCTCTTGTTATTATAG 59.879 44.000 0.00 0.00 41.91 1.31
2339 2391 7.272978 GGCTCTTGTTATTATAGGACTTGTCA 58.727 38.462 3.08 0.00 0.00 3.58
2341 2393 8.604890 GCTCTTGTTATTATAGGACTTGTCAAC 58.395 37.037 3.08 0.00 0.00 3.18
2345 2397 7.335627 TGTTATTATAGGACTTGTCAACCCAG 58.664 38.462 3.08 0.00 0.00 4.45
2356 2408 0.397941 TCAACCCAGCCAGTCTTGAG 59.602 55.000 0.00 0.00 0.00 3.02
2357 2409 0.607489 CAACCCAGCCAGTCTTGAGG 60.607 60.000 0.00 0.00 0.00 3.86
2392 2444 2.669569 GCACTTGCCCTCGCTCAA 60.670 61.111 0.00 0.00 35.36 3.02
2393 2445 2.684843 GCACTTGCCCTCGCTCAAG 61.685 63.158 0.00 0.00 43.79 3.02
2394 2446 1.004560 CACTTGCCCTCGCTCAAGA 60.005 57.895 8.72 0.00 41.50 3.02
2395 2447 0.392193 CACTTGCCCTCGCTCAAGAT 60.392 55.000 8.72 0.00 41.50 2.40
2396 2448 0.326264 ACTTGCCCTCGCTCAAGATT 59.674 50.000 8.72 0.00 41.50 2.40
2397 2449 1.271597 ACTTGCCCTCGCTCAAGATTT 60.272 47.619 8.72 0.00 41.50 2.17
2398 2450 2.027192 ACTTGCCCTCGCTCAAGATTTA 60.027 45.455 8.72 0.00 41.50 1.40
2399 2451 2.024176 TGCCCTCGCTCAAGATTTAC 57.976 50.000 0.00 0.00 35.36 2.01
2400 2452 1.277842 TGCCCTCGCTCAAGATTTACA 59.722 47.619 0.00 0.00 35.36 2.41
2401 2453 1.666189 GCCCTCGCTCAAGATTTACAC 59.334 52.381 0.00 0.00 0.00 2.90
2402 2454 2.280628 CCCTCGCTCAAGATTTACACC 58.719 52.381 0.00 0.00 0.00 4.16
2403 2455 2.093447 CCCTCGCTCAAGATTTACACCT 60.093 50.000 0.00 0.00 0.00 4.00
2404 2456 3.190874 CCTCGCTCAAGATTTACACCTC 58.809 50.000 0.00 0.00 0.00 3.85
2405 2457 3.118956 CCTCGCTCAAGATTTACACCTCT 60.119 47.826 0.00 0.00 0.00 3.69
2406 2458 4.098044 CCTCGCTCAAGATTTACACCTCTA 59.902 45.833 0.00 0.00 0.00 2.43
2407 2459 5.250235 TCGCTCAAGATTTACACCTCTAG 57.750 43.478 0.00 0.00 0.00 2.43
2408 2460 4.098044 TCGCTCAAGATTTACACCTCTAGG 59.902 45.833 0.00 0.00 42.17 3.02
2409 2461 4.098044 CGCTCAAGATTTACACCTCTAGGA 59.902 45.833 2.23 0.00 38.94 2.94
2410 2462 5.394224 CGCTCAAGATTTACACCTCTAGGAA 60.394 44.000 2.23 0.00 38.94 3.36
2411 2463 5.813157 GCTCAAGATTTACACCTCTAGGAAC 59.187 44.000 2.23 0.00 38.94 3.62
2412 2464 6.351456 GCTCAAGATTTACACCTCTAGGAACT 60.351 42.308 2.23 0.00 46.37 3.01
2413 2465 7.554959 TCAAGATTTACACCTCTAGGAACTT 57.445 36.000 2.23 0.00 41.75 2.66
2414 2466 7.386851 TCAAGATTTACACCTCTAGGAACTTG 58.613 38.462 2.23 0.00 41.75 3.16
2415 2467 6.936968 AGATTTACACCTCTAGGAACTTGT 57.063 37.500 2.23 0.00 41.75 3.16
2416 2468 7.317722 AGATTTACACCTCTAGGAACTTGTT 57.682 36.000 2.23 0.00 41.75 2.83
2417 2469 7.162082 AGATTTACACCTCTAGGAACTTGTTG 58.838 38.462 2.23 0.00 41.75 3.33
2418 2470 5.881923 TTACACCTCTAGGAACTTGTTGT 57.118 39.130 2.23 0.00 41.75 3.32
2419 2471 4.772886 ACACCTCTAGGAACTTGTTGTT 57.227 40.909 2.23 0.00 41.75 2.83
2420 2472 4.451900 ACACCTCTAGGAACTTGTTGTTG 58.548 43.478 2.23 0.00 41.75 3.33
2421 2473 3.251004 CACCTCTAGGAACTTGTTGTTGC 59.749 47.826 2.23 0.00 45.65 4.17
2422 2474 2.814336 CCTCTAGGAACTTGTTGTTGCC 59.186 50.000 0.00 0.00 46.33 4.52
2423 2475 3.496870 CCTCTAGGAACTTGTTGTTGCCT 60.497 47.826 0.00 0.00 46.33 4.75
2424 2476 3.740115 TCTAGGAACTTGTTGTTGCCTC 58.260 45.455 0.00 0.00 46.33 4.70
2425 2477 2.435372 AGGAACTTGTTGTTGCCTCA 57.565 45.000 0.00 0.00 46.33 3.86
2426 2478 2.301346 AGGAACTTGTTGTTGCCTCAG 58.699 47.619 0.00 0.00 46.33 3.35
2427 2479 2.092429 AGGAACTTGTTGTTGCCTCAGA 60.092 45.455 0.00 0.00 46.33 3.27
2428 2480 2.033424 GGAACTTGTTGTTGCCTCAGAC 59.967 50.000 0.00 0.00 40.49 3.51
2429 2481 2.717639 ACTTGTTGTTGCCTCAGACT 57.282 45.000 0.00 0.00 0.00 3.24
2430 2482 2.292267 ACTTGTTGTTGCCTCAGACTG 58.708 47.619 0.00 0.00 0.00 3.51
2431 2483 1.002033 CTTGTTGTTGCCTCAGACTGC 60.002 52.381 0.00 0.00 0.00 4.40
2432 2484 0.107263 TGTTGTTGCCTCAGACTGCA 60.107 50.000 0.00 0.00 35.27 4.41
2433 2485 1.242076 GTTGTTGCCTCAGACTGCAT 58.758 50.000 0.00 0.00 37.33 3.96
2434 2486 1.068748 GTTGTTGCCTCAGACTGCATG 60.069 52.381 0.00 0.00 37.33 4.06
2435 2487 0.607217 TGTTGCCTCAGACTGCATGG 60.607 55.000 0.00 1.30 37.33 3.66
2436 2488 0.321919 GTTGCCTCAGACTGCATGGA 60.322 55.000 11.47 0.00 37.33 3.41
2437 2489 0.401356 TTGCCTCAGACTGCATGGAA 59.599 50.000 11.47 0.66 37.33 3.53
2438 2490 0.035725 TGCCTCAGACTGCATGGAAG 60.036 55.000 11.47 0.00 31.31 3.46
2439 2491 0.035630 GCCTCAGACTGCATGGAAGT 60.036 55.000 11.47 0.00 0.00 3.01
2440 2492 1.735386 CCTCAGACTGCATGGAAGTG 58.265 55.000 0.00 0.00 0.00 3.16
2441 2493 1.678123 CCTCAGACTGCATGGAAGTGG 60.678 57.143 0.00 0.00 0.00 4.00
2442 2494 1.002888 CTCAGACTGCATGGAAGTGGT 59.997 52.381 0.00 0.00 0.00 4.16
2443 2495 2.234661 CTCAGACTGCATGGAAGTGGTA 59.765 50.000 0.00 0.00 0.00 3.25
2444 2496 2.637382 TCAGACTGCATGGAAGTGGTAA 59.363 45.455 0.00 0.00 0.00 2.85
2445 2497 2.744202 CAGACTGCATGGAAGTGGTAAC 59.256 50.000 0.00 0.00 0.00 2.50
2446 2498 2.639839 AGACTGCATGGAAGTGGTAACT 59.360 45.455 0.00 0.00 38.71 2.24
2447 2499 3.838317 AGACTGCATGGAAGTGGTAACTA 59.162 43.478 0.00 0.00 34.77 2.24
2448 2500 4.286032 AGACTGCATGGAAGTGGTAACTAA 59.714 41.667 0.00 0.00 34.77 2.24
2449 2501 5.045578 AGACTGCATGGAAGTGGTAACTAAT 60.046 40.000 0.00 0.00 34.77 1.73
2450 2502 6.156256 AGACTGCATGGAAGTGGTAACTAATA 59.844 38.462 0.00 0.00 34.77 0.98
2451 2503 6.900194 ACTGCATGGAAGTGGTAACTAATAT 58.100 36.000 0.00 0.00 34.77 1.28
2452 2504 7.346471 ACTGCATGGAAGTGGTAACTAATATT 58.654 34.615 0.00 0.00 34.77 1.28
2453 2505 8.491134 ACTGCATGGAAGTGGTAACTAATATTA 58.509 33.333 0.00 0.00 34.77 0.98
2454 2506 9.337396 CTGCATGGAAGTGGTAACTAATATTAA 57.663 33.333 0.00 0.00 34.77 1.40
2455 2507 9.337396 TGCATGGAAGTGGTAACTAATATTAAG 57.663 33.333 0.00 0.00 34.77 1.85
2456 2508 9.555727 GCATGGAAGTGGTAACTAATATTAAGA 57.444 33.333 0.00 0.00 34.77 2.10
2460 2512 9.557061 GGAAGTGGTAACTAATATTAAGAAGGG 57.443 37.037 0.00 0.00 34.77 3.95
2463 2515 8.430431 AGTGGTAACTAATATTAAGAAGGGAGC 58.570 37.037 0.00 0.00 33.79 4.70
2464 2516 7.660617 GTGGTAACTAATATTAAGAAGGGAGCC 59.339 40.741 0.00 0.00 37.61 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.712380 TAAACTAGAGGGGACGGGGT 59.288 55.000 0.00 0.00 0.00 4.95
1 2 1.969208 GATAAACTAGAGGGGACGGGG 59.031 57.143 0.00 0.00 0.00 5.73
2 3 1.969208 GGATAAACTAGAGGGGACGGG 59.031 57.143 0.00 0.00 0.00 5.28
3 4 2.892215 GAGGATAAACTAGAGGGGACGG 59.108 54.545 0.00 0.00 0.00 4.79
4 5 2.892215 GGAGGATAAACTAGAGGGGACG 59.108 54.545 0.00 0.00 0.00 4.79
5 6 2.892215 CGGAGGATAAACTAGAGGGGAC 59.108 54.545 0.00 0.00 0.00 4.46
6 7 2.755549 GCGGAGGATAAACTAGAGGGGA 60.756 54.545 0.00 0.00 0.00 4.81
7 8 1.619332 GCGGAGGATAAACTAGAGGGG 59.381 57.143 0.00 0.00 0.00 4.79
8 9 1.619332 GGCGGAGGATAAACTAGAGGG 59.381 57.143 0.00 0.00 0.00 4.30
9 10 2.317040 TGGCGGAGGATAAACTAGAGG 58.683 52.381 0.00 0.00 0.00 3.69
10 11 4.767928 ACTATGGCGGAGGATAAACTAGAG 59.232 45.833 0.00 0.00 0.00 2.43
11 12 4.737578 ACTATGGCGGAGGATAAACTAGA 58.262 43.478 0.00 0.00 0.00 2.43
12 13 5.470047 AACTATGGCGGAGGATAAACTAG 57.530 43.478 0.00 0.00 0.00 2.57
13 14 5.881923 AAACTATGGCGGAGGATAAACTA 57.118 39.130 0.00 0.00 0.00 2.24
14 15 4.772886 AAACTATGGCGGAGGATAAACT 57.227 40.909 0.00 0.00 0.00 2.66
15 16 4.025145 CGAAAACTATGGCGGAGGATAAAC 60.025 45.833 0.00 0.00 0.00 2.01
16 17 4.124238 CGAAAACTATGGCGGAGGATAAA 58.876 43.478 0.00 0.00 0.00 1.40
17 18 3.133362 ACGAAAACTATGGCGGAGGATAA 59.867 43.478 0.00 0.00 0.00 1.75
18 19 2.696707 ACGAAAACTATGGCGGAGGATA 59.303 45.455 0.00 0.00 0.00 2.59
19 20 1.485066 ACGAAAACTATGGCGGAGGAT 59.515 47.619 0.00 0.00 0.00 3.24
20 21 0.899720 ACGAAAACTATGGCGGAGGA 59.100 50.000 0.00 0.00 0.00 3.71
21 22 2.159142 ACTACGAAAACTATGGCGGAGG 60.159 50.000 0.00 0.00 38.95 4.30
22 23 2.858344 CACTACGAAAACTATGGCGGAG 59.142 50.000 0.00 0.00 40.40 4.63
23 24 2.883574 CACTACGAAAACTATGGCGGA 58.116 47.619 0.00 0.00 0.00 5.54
24 25 1.326548 GCACTACGAAAACTATGGCGG 59.673 52.381 0.00 0.00 0.00 6.13
25 26 2.268298 AGCACTACGAAAACTATGGCG 58.732 47.619 0.00 0.00 0.00 5.69
26 27 4.270325 CCTAAGCACTACGAAAACTATGGC 59.730 45.833 0.00 0.00 0.00 4.40
27 28 4.270325 GCCTAAGCACTACGAAAACTATGG 59.730 45.833 0.00 0.00 39.53 2.74
28 29 4.026804 CGCCTAAGCACTACGAAAACTATG 60.027 45.833 0.00 0.00 39.83 2.23
29 30 4.110482 CGCCTAAGCACTACGAAAACTAT 58.890 43.478 0.00 0.00 39.83 2.12
30 31 3.191162 TCGCCTAAGCACTACGAAAACTA 59.809 43.478 0.00 0.00 39.83 2.24
31 32 2.029649 TCGCCTAAGCACTACGAAAACT 60.030 45.455 0.00 0.00 39.83 2.66
32 33 2.331194 TCGCCTAAGCACTACGAAAAC 58.669 47.619 0.00 0.00 39.83 2.43
33 34 2.728690 TCGCCTAAGCACTACGAAAA 57.271 45.000 0.00 0.00 39.83 2.29
34 35 2.602878 CTTCGCCTAAGCACTACGAAA 58.397 47.619 0.00 0.00 41.61 3.46
35 36 2.273370 CTTCGCCTAAGCACTACGAA 57.727 50.000 0.00 0.00 40.12 3.85
56 57 8.900601 TGTTGGTGAAGAACAATCTCCGTAGG 62.901 46.154 0.00 0.00 38.73 3.18
57 58 4.188247 TGGTGAAGAACAATCTCCGTAG 57.812 45.455 0.00 0.00 33.77 3.51
58 59 4.202274 TGTTGGTGAAGAACAATCTCCGTA 60.202 41.667 0.00 0.00 33.77 4.02
59 60 3.139077 GTTGGTGAAGAACAATCTCCGT 58.861 45.455 0.00 0.00 33.77 4.69
60 61 3.058914 GTGTTGGTGAAGAACAATCTCCG 60.059 47.826 0.00 0.00 35.15 4.63
61 62 3.253432 GGTGTTGGTGAAGAACAATCTCC 59.747 47.826 0.00 0.00 35.15 3.71
62 63 3.882888 TGGTGTTGGTGAAGAACAATCTC 59.117 43.478 0.00 0.00 35.15 2.75
63 64 3.897239 TGGTGTTGGTGAAGAACAATCT 58.103 40.909 0.00 0.00 35.15 2.40
64 65 4.278170 TGATGGTGTTGGTGAAGAACAATC 59.722 41.667 0.00 0.00 35.15 2.67
65 66 4.037923 GTGATGGTGTTGGTGAAGAACAAT 59.962 41.667 0.00 0.00 35.15 2.71
66 67 3.380004 GTGATGGTGTTGGTGAAGAACAA 59.620 43.478 0.00 0.00 35.15 2.83
67 68 2.948979 GTGATGGTGTTGGTGAAGAACA 59.051 45.455 0.00 0.00 0.00 3.18
68 69 2.293399 GGTGATGGTGTTGGTGAAGAAC 59.707 50.000 0.00 0.00 0.00 3.01
69 70 2.092158 TGGTGATGGTGTTGGTGAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
70 71 1.492599 TGGTGATGGTGTTGGTGAAGA 59.507 47.619 0.00 0.00 0.00 2.87
71 72 1.608590 GTGGTGATGGTGTTGGTGAAG 59.391 52.381 0.00 0.00 0.00 3.02
72 73 1.686355 GTGGTGATGGTGTTGGTGAA 58.314 50.000 0.00 0.00 0.00 3.18
73 74 0.533978 CGTGGTGATGGTGTTGGTGA 60.534 55.000 0.00 0.00 0.00 4.02
74 75 1.948508 CGTGGTGATGGTGTTGGTG 59.051 57.895 0.00 0.00 0.00 4.17
75 76 1.896660 GCGTGGTGATGGTGTTGGT 60.897 57.895 0.00 0.00 0.00 3.67
76 77 2.625823 GGCGTGGTGATGGTGTTGG 61.626 63.158 0.00 0.00 0.00 3.77
77 78 2.953821 GGCGTGGTGATGGTGTTG 59.046 61.111 0.00 0.00 0.00 3.33
78 79 2.668212 CGGCGTGGTGATGGTGTT 60.668 61.111 0.00 0.00 0.00 3.32
79 80 3.876589 GACGGCGTGGTGATGGTGT 62.877 63.158 21.19 0.00 0.00 4.16
80 81 3.118454 GACGGCGTGGTGATGGTG 61.118 66.667 21.19 0.00 0.00 4.17
81 82 4.735132 CGACGGCGTGGTGATGGT 62.735 66.667 21.19 0.00 0.00 3.55
94 95 0.593008 TGAGTTCCGACAACACGACG 60.593 55.000 0.00 0.00 35.09 5.12
95 96 1.719780 GATGAGTTCCGACAACACGAC 59.280 52.381 0.00 0.00 35.09 4.34
96 97 1.611977 AGATGAGTTCCGACAACACGA 59.388 47.619 0.00 0.00 35.09 4.35
97 98 2.065993 AGATGAGTTCCGACAACACG 57.934 50.000 0.00 0.00 0.00 4.49
98 99 4.175787 AGTAGATGAGTTCCGACAACAC 57.824 45.455 0.00 0.00 0.00 3.32
99 100 5.008331 AGTAGTAGATGAGTTCCGACAACA 58.992 41.667 0.00 0.00 0.00 3.33
100 101 5.564048 AGTAGTAGATGAGTTCCGACAAC 57.436 43.478 0.00 0.00 0.00 3.32
101 102 5.163784 CGAAGTAGTAGATGAGTTCCGACAA 60.164 44.000 0.00 0.00 0.00 3.18
102 103 4.331992 CGAAGTAGTAGATGAGTTCCGACA 59.668 45.833 0.00 0.00 0.00 4.35
103 104 4.785975 GCGAAGTAGTAGATGAGTTCCGAC 60.786 50.000 0.00 0.00 0.00 4.79
104 105 3.311871 GCGAAGTAGTAGATGAGTTCCGA 59.688 47.826 0.00 0.00 0.00 4.55
105 106 3.548415 GGCGAAGTAGTAGATGAGTTCCG 60.548 52.174 0.00 0.00 0.00 4.30
106 107 3.243468 GGGCGAAGTAGTAGATGAGTTCC 60.243 52.174 0.00 0.00 0.00 3.62
107 108 3.243468 GGGGCGAAGTAGTAGATGAGTTC 60.243 52.174 0.00 0.00 0.00 3.01
108 109 2.694109 GGGGCGAAGTAGTAGATGAGTT 59.306 50.000 0.00 0.00 0.00 3.01
109 110 2.091775 AGGGGCGAAGTAGTAGATGAGT 60.092 50.000 0.00 0.00 0.00 3.41
110 111 2.554893 GAGGGGCGAAGTAGTAGATGAG 59.445 54.545 0.00 0.00 0.00 2.90
111 112 2.175069 AGAGGGGCGAAGTAGTAGATGA 59.825 50.000 0.00 0.00 0.00 2.92
112 113 2.588620 AGAGGGGCGAAGTAGTAGATG 58.411 52.381 0.00 0.00 0.00 2.90
113 114 2.959707 CAAGAGGGGCGAAGTAGTAGAT 59.040 50.000 0.00 0.00 0.00 1.98
114 115 2.376109 CAAGAGGGGCGAAGTAGTAGA 58.624 52.381 0.00 0.00 0.00 2.59
115 116 1.202428 GCAAGAGGGGCGAAGTAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
116 117 0.822164 GCAAGAGGGGCGAAGTAGTA 59.178 55.000 0.00 0.00 0.00 1.82
117 118 0.905337 AGCAAGAGGGGCGAAGTAGT 60.905 55.000 0.00 0.00 36.08 2.73
118 119 0.460987 CAGCAAGAGGGGCGAAGTAG 60.461 60.000 0.00 0.00 36.08 2.57
119 120 1.596934 CAGCAAGAGGGGCGAAGTA 59.403 57.895 0.00 0.00 36.08 2.24
120 121 2.348998 CAGCAAGAGGGGCGAAGT 59.651 61.111 0.00 0.00 36.08 3.01
121 122 2.262774 ATCCAGCAAGAGGGGCGAAG 62.263 60.000 0.00 0.00 36.08 3.79
122 123 2.257409 GATCCAGCAAGAGGGGCGAA 62.257 60.000 0.00 0.00 36.08 4.70
123 124 2.688666 ATCCAGCAAGAGGGGCGA 60.689 61.111 0.00 0.00 36.08 5.54
124 125 2.203126 GATCCAGCAAGAGGGGCG 60.203 66.667 0.00 0.00 36.08 6.13
125 126 0.750911 CTTGATCCAGCAAGAGGGGC 60.751 60.000 0.00 0.00 46.31 5.80
126 127 0.914644 TCTTGATCCAGCAAGAGGGG 59.085 55.000 3.12 0.00 46.73 4.79
131 132 0.731417 CGCCTTCTTGATCCAGCAAG 59.269 55.000 0.00 0.00 45.10 4.01
132 133 0.324614 TCGCCTTCTTGATCCAGCAA 59.675 50.000 0.00 0.00 0.00 3.91
133 134 0.107993 CTCGCCTTCTTGATCCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
134 135 0.813210 CCTCGCCTTCTTGATCCAGC 60.813 60.000 0.00 0.00 0.00 4.85
135 136 0.826715 TCCTCGCCTTCTTGATCCAG 59.173 55.000 0.00 0.00 0.00 3.86
136 137 0.537188 GTCCTCGCCTTCTTGATCCA 59.463 55.000 0.00 0.00 0.00 3.41
137 138 0.528684 CGTCCTCGCCTTCTTGATCC 60.529 60.000 0.00 0.00 0.00 3.36
138 139 0.173708 ACGTCCTCGCCTTCTTGATC 59.826 55.000 0.00 0.00 41.18 2.92
139 140 0.173708 GACGTCCTCGCCTTCTTGAT 59.826 55.000 3.51 0.00 41.18 2.57
140 141 1.176619 TGACGTCCTCGCCTTCTTGA 61.177 55.000 14.12 0.00 41.18 3.02
141 142 0.108615 ATGACGTCCTCGCCTTCTTG 60.109 55.000 14.12 0.00 41.18 3.02
142 143 0.173708 GATGACGTCCTCGCCTTCTT 59.826 55.000 14.12 0.00 41.18 2.52
143 144 1.810532 GATGACGTCCTCGCCTTCT 59.189 57.895 14.12 0.00 41.18 2.85
144 145 1.586564 CGATGACGTCCTCGCCTTC 60.587 63.158 26.17 3.34 41.18 3.46
145 146 1.994507 CTCGATGACGTCCTCGCCTT 61.995 60.000 30.57 0.00 41.18 4.35
146 147 2.437895 TCGATGACGTCCTCGCCT 60.438 61.111 30.57 3.38 41.18 5.52
147 148 2.024871 CTCGATGACGTCCTCGCC 59.975 66.667 30.57 8.58 41.18 5.54
148 149 2.652496 GCTCGATGACGTCCTCGC 60.652 66.667 30.57 18.20 41.18 5.03
149 150 1.297967 CAGCTCGATGACGTCCTCG 60.298 63.158 29.86 29.86 43.34 4.63
150 151 0.452184 TTCAGCTCGATGACGTCCTC 59.548 55.000 14.12 12.10 40.69 3.71
151 152 0.171455 GTTCAGCTCGATGACGTCCT 59.829 55.000 14.12 2.19 40.69 3.85
152 153 1.134530 CGTTCAGCTCGATGACGTCC 61.135 60.000 14.12 0.00 40.69 4.79
153 154 0.454620 ACGTTCAGCTCGATGACGTC 60.455 55.000 9.11 9.11 40.69 4.34
154 155 0.729478 CACGTTCAGCTCGATGACGT 60.729 55.000 0.00 5.49 37.39 4.34
155 156 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
156 157 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
157 158 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
158 159 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
159 160 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
160 161 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
161 162 1.010935 ATCAGCACACGTTCAGCTCG 61.011 55.000 3.38 0.00 36.26 5.03
162 163 0.718343 GATCAGCACACGTTCAGCTC 59.282 55.000 3.38 0.00 36.26 4.09
163 164 1.010935 CGATCAGCACACGTTCAGCT 61.011 55.000 0.64 0.64 39.63 4.24
164 165 1.417592 CGATCAGCACACGTTCAGC 59.582 57.895 0.00 0.00 0.00 4.26
175 176 2.583593 GACACCTCCGCGATCAGC 60.584 66.667 8.23 0.00 43.95 4.26
176 177 2.278206 CGACACCTCCGCGATCAG 60.278 66.667 8.23 0.00 0.00 2.90
177 178 3.060000 ACGACACCTCCGCGATCA 61.060 61.111 8.23 0.00 0.00 2.92
178 179 2.579787 CACGACACCTCCGCGATC 60.580 66.667 8.23 0.00 0.00 3.69
179 180 4.796231 GCACGACACCTCCGCGAT 62.796 66.667 8.23 0.00 0.00 4.58
182 183 2.665185 AAAGCACGACACCTCCGC 60.665 61.111 0.00 0.00 0.00 5.54
183 184 2.372690 CGAAAGCACGACACCTCCG 61.373 63.158 0.00 0.00 35.09 4.63
184 185 2.027625 CCGAAAGCACGACACCTCC 61.028 63.158 0.00 0.00 35.09 4.30
185 186 0.038892 TACCGAAAGCACGACACCTC 60.039 55.000 0.00 0.00 35.09 3.85
186 187 0.319297 GTACCGAAAGCACGACACCT 60.319 55.000 0.00 0.00 35.09 4.00
187 188 0.319297 AGTACCGAAAGCACGACACC 60.319 55.000 0.00 0.00 35.09 4.16
188 189 2.248487 CTAGTACCGAAAGCACGACAC 58.752 52.381 0.00 0.00 35.09 3.67
189 190 1.200716 CCTAGTACCGAAAGCACGACA 59.799 52.381 0.00 0.00 35.09 4.35
190 191 1.470098 TCCTAGTACCGAAAGCACGAC 59.530 52.381 0.00 0.00 35.09 4.34
191 192 1.825090 TCCTAGTACCGAAAGCACGA 58.175 50.000 0.00 0.00 35.09 4.35
192 193 2.728922 GATCCTAGTACCGAAAGCACG 58.271 52.381 0.00 0.00 0.00 5.34
193 194 2.357009 TCGATCCTAGTACCGAAAGCAC 59.643 50.000 0.00 0.00 0.00 4.40
194 195 2.646930 TCGATCCTAGTACCGAAAGCA 58.353 47.619 0.00 0.00 0.00 3.91
195 196 3.919223 ATCGATCCTAGTACCGAAAGC 57.081 47.619 0.00 0.00 34.59 3.51
196 197 5.434352 TCAATCGATCCTAGTACCGAAAG 57.566 43.478 0.00 0.00 34.59 2.62
197 198 5.840243 TTCAATCGATCCTAGTACCGAAA 57.160 39.130 0.00 0.00 34.59 3.46
198 199 6.010294 GATTCAATCGATCCTAGTACCGAA 57.990 41.667 0.00 0.00 34.59 4.30
199 200 5.624344 GATTCAATCGATCCTAGTACCGA 57.376 43.478 0.00 0.00 35.43 4.69
213 214 2.592215 CGAACGTCTTCGCGATTCAATC 60.592 50.000 10.88 3.93 42.72 2.67
214 215 1.320555 CGAACGTCTTCGCGATTCAAT 59.679 47.619 10.88 0.00 42.72 2.57
215 216 0.706184 CGAACGTCTTCGCGATTCAA 59.294 50.000 10.88 0.00 42.72 2.69
216 217 2.345900 CGAACGTCTTCGCGATTCA 58.654 52.632 10.88 0.00 42.72 2.57
224 225 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
225 226 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
226 227 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
227 228 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
228 229 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
230 231 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
231 232 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
232 233 0.179181 GACGCGGTTGATGTAGTCGA 60.179 55.000 12.47 0.00 0.00 4.20
233 234 0.455464 TGACGCGGTTGATGTAGTCG 60.455 55.000 12.47 0.00 0.00 4.18
234 235 0.989890 GTGACGCGGTTGATGTAGTC 59.010 55.000 12.47 0.00 0.00 2.59
235 236 0.601558 AGTGACGCGGTTGATGTAGT 59.398 50.000 12.47 0.00 0.00 2.73
236 237 1.390123 CAAGTGACGCGGTTGATGTAG 59.610 52.381 12.47 0.00 0.00 2.74
237 238 1.000052 TCAAGTGACGCGGTTGATGTA 60.000 47.619 12.47 0.00 0.00 2.29
238 239 0.249699 TCAAGTGACGCGGTTGATGT 60.250 50.000 12.47 0.00 0.00 3.06
239 240 0.163788 GTCAAGTGACGCGGTTGATG 59.836 55.000 12.47 3.92 35.12 3.07
240 241 2.528797 GTCAAGTGACGCGGTTGAT 58.471 52.632 12.47 0.00 35.12 2.57
241 242 4.021650 GTCAAGTGACGCGGTTGA 57.978 55.556 12.47 11.08 35.12 3.18
264 265 1.354506 CCCTCGTAGACCGTAAGCG 59.645 63.158 0.00 0.00 37.94 4.68
265 266 1.332065 GTACCCTCGTAGACCGTAAGC 59.668 57.143 0.00 0.00 37.94 3.09
266 267 1.594862 CGTACCCTCGTAGACCGTAAG 59.405 57.143 0.00 0.00 37.94 2.34
267 268 1.066430 ACGTACCCTCGTAGACCGTAA 60.066 52.381 0.00 0.00 42.35 3.18
268 269 0.535335 ACGTACCCTCGTAGACCGTA 59.465 55.000 0.00 0.00 42.35 4.02
269 270 0.535335 TACGTACCCTCGTAGACCGT 59.465 55.000 0.00 0.00 43.80 4.83
270 271 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
275 276 2.742053 GTGTTGTCTACGTACCCTCGTA 59.258 50.000 0.00 0.00 43.80 3.43
276 277 1.537202 GTGTTGTCTACGTACCCTCGT 59.463 52.381 0.00 0.00 45.97 4.18
277 278 1.808945 AGTGTTGTCTACGTACCCTCG 59.191 52.381 0.00 0.00 0.00 4.63
278 279 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
279 280 3.151912 AGAGTGTTGTCTACGTACCCT 57.848 47.619 0.00 0.00 0.00 4.34
280 281 3.127721 GGTAGAGTGTTGTCTACGTACCC 59.872 52.174 0.00 0.00 46.88 3.69
281 282 3.127721 GGGTAGAGTGTTGTCTACGTACC 59.872 52.174 0.00 0.00 46.88 3.34
282 283 4.006319 AGGGTAGAGTGTTGTCTACGTAC 58.994 47.826 0.00 0.00 46.88 3.67
283 284 4.019860 AGAGGGTAGAGTGTTGTCTACGTA 60.020 45.833 0.00 0.00 46.88 3.57
284 285 3.080319 GAGGGTAGAGTGTTGTCTACGT 58.920 50.000 0.00 0.00 46.88 3.57
285 286 3.345414 AGAGGGTAGAGTGTTGTCTACG 58.655 50.000 5.24 0.00 46.88 3.51
286 287 4.523558 ACAAGAGGGTAGAGTGTTGTCTAC 59.476 45.833 2.93 2.93 45.70 2.59
287 288 4.737578 ACAAGAGGGTAGAGTGTTGTCTA 58.262 43.478 0.00 0.00 0.00 2.59
288 289 3.577919 ACAAGAGGGTAGAGTGTTGTCT 58.422 45.455 0.00 0.00 0.00 3.41
289 290 4.058817 CAACAAGAGGGTAGAGTGTTGTC 58.941 47.826 6.66 0.00 42.51 3.18
290 291 3.744530 GCAACAAGAGGGTAGAGTGTTGT 60.745 47.826 14.28 0.00 46.81 3.32
292 293 2.706190 AGCAACAAGAGGGTAGAGTGTT 59.294 45.455 0.00 0.00 32.78 3.32
293 294 2.330216 AGCAACAAGAGGGTAGAGTGT 58.670 47.619 0.00 0.00 0.00 3.55
294 295 4.437239 CATAGCAACAAGAGGGTAGAGTG 58.563 47.826 0.00 0.00 0.00 3.51
295 296 3.118592 GCATAGCAACAAGAGGGTAGAGT 60.119 47.826 0.00 0.00 0.00 3.24
296 297 3.118629 TGCATAGCAACAAGAGGGTAGAG 60.119 47.826 0.00 0.00 34.76 2.43
297 298 2.837591 TGCATAGCAACAAGAGGGTAGA 59.162 45.455 0.00 0.00 34.76 2.59
298 299 3.266510 TGCATAGCAACAAGAGGGTAG 57.733 47.619 0.00 0.00 34.76 3.18
299 300 3.199727 TGATGCATAGCAACAAGAGGGTA 59.800 43.478 0.00 0.00 43.62 3.69
300 301 2.025981 TGATGCATAGCAACAAGAGGGT 60.026 45.455 0.00 0.00 43.62 4.34
301 302 2.357009 GTGATGCATAGCAACAAGAGGG 59.643 50.000 0.00 0.00 42.49 4.30
302 303 2.357009 GGTGATGCATAGCAACAAGAGG 59.643 50.000 0.00 0.00 42.49 3.69
303 304 3.011818 TGGTGATGCATAGCAACAAGAG 58.988 45.455 0.00 0.00 42.49 2.85
304 305 3.070476 TGGTGATGCATAGCAACAAGA 57.930 42.857 0.00 0.00 42.49 3.02
305 306 3.379057 TCATGGTGATGCATAGCAACAAG 59.621 43.478 9.90 6.31 44.04 3.16
306 307 3.354467 TCATGGTGATGCATAGCAACAA 58.646 40.909 9.90 0.00 44.04 2.83
307 308 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
308 309 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
309 310 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
310 311 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
311 312 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
312 313 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
313 314 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
314 315 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
315 316 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
316 317 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
317 318 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
318 319 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
319 320 1.270785 ACACACGCAAGATCATGGTGA 60.271 47.619 19.56 0.00 43.62 4.02
320 321 1.135888 CACACACGCAAGATCATGGTG 60.136 52.381 14.17 14.17 43.62 4.17
321 322 1.159285 CACACACGCAAGATCATGGT 58.841 50.000 0.00 0.00 43.62 3.55
322 323 1.159285 ACACACACGCAAGATCATGG 58.841 50.000 0.00 0.00 43.62 3.66
323 324 2.349580 CCTACACACACGCAAGATCATG 59.650 50.000 0.00 0.00 43.62 3.07
324 325 2.233676 TCCTACACACACGCAAGATCAT 59.766 45.455 0.00 0.00 43.62 2.45
325 326 1.616374 TCCTACACACACGCAAGATCA 59.384 47.619 0.00 0.00 43.62 2.92
326 327 2.363788 TCCTACACACACGCAAGATC 57.636 50.000 0.00 0.00 43.62 2.75
327 328 3.334583 AATCCTACACACACGCAAGAT 57.665 42.857 0.00 0.00 43.62 2.40
328 329 2.831685 AATCCTACACACACGCAAGA 57.168 45.000 0.00 0.00 43.62 3.02
349 350 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
350 351 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
351 352 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
352 353 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
353 354 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
354 355 4.393990 CCTGTTGGGGAACGTAGTAATTTC 59.606 45.833 0.00 0.00 45.00 2.17
355 356 4.329392 CCTGTTGGGGAACGTAGTAATTT 58.671 43.478 0.00 0.00 45.00 1.82
356 357 3.871074 GCCTGTTGGGGAACGTAGTAATT 60.871 47.826 0.00 0.00 35.60 1.40
357 358 2.355412 GCCTGTTGGGGAACGTAGTAAT 60.355 50.000 0.00 0.00 35.60 1.89
358 359 1.002315 GCCTGTTGGGGAACGTAGTAA 59.998 52.381 0.00 0.00 35.60 2.24
359 360 0.609662 GCCTGTTGGGGAACGTAGTA 59.390 55.000 0.00 0.00 35.60 1.82
360 361 1.373812 GCCTGTTGGGGAACGTAGT 59.626 57.895 0.00 0.00 37.91 2.73
361 362 0.673644 CTGCCTGTTGGGGAACGTAG 60.674 60.000 0.00 0.00 34.18 3.51
362 363 1.373435 CTGCCTGTTGGGGAACGTA 59.627 57.895 0.00 0.00 34.18 3.57
363 364 2.113139 CTGCCTGTTGGGGAACGT 59.887 61.111 0.00 0.00 34.18 3.99
364 365 0.250553 TAACTGCCTGTTGGGGAACG 60.251 55.000 0.00 0.00 39.55 3.95
365 366 1.818674 CATAACTGCCTGTTGGGGAAC 59.181 52.381 0.00 0.00 39.55 3.62
366 367 1.890573 GCATAACTGCCTGTTGGGGAA 60.891 52.381 0.00 0.00 42.88 3.97
367 368 0.323360 GCATAACTGCCTGTTGGGGA 60.323 55.000 0.00 0.00 42.88 4.81
368 369 2.192605 GCATAACTGCCTGTTGGGG 58.807 57.895 0.00 0.00 42.88 4.96
399 400 4.157246 TGTCTCTGTAAACTGAGGGCTAA 58.843 43.478 14.63 0.00 40.82 3.09
408 409 7.548427 CACATCTCATGAATGTCTCTGTAAACT 59.452 37.037 15.99 0.00 0.00 2.66
409 410 7.332926 ACACATCTCATGAATGTCTCTGTAAAC 59.667 37.037 15.99 0.00 0.00 2.01
441 442 5.126067 TGAAAAGGACTGAAAAGGAGACAG 58.874 41.667 0.00 0.00 37.62 3.51
449 450 3.699038 CCACCACTGAAAAGGACTGAAAA 59.301 43.478 0.00 0.00 0.00 2.29
465 466 4.772886 AAAGGATCCATACTACCACCAC 57.227 45.455 15.82 0.00 0.00 4.16
513 514 3.103080 AGTACGGAGAAATCAGGTCCT 57.897 47.619 0.00 0.00 0.00 3.85
515 516 7.845066 AAAATAAGTACGGAGAAATCAGGTC 57.155 36.000 0.00 0.00 0.00 3.85
519 520 9.158233 CCAGTAAAAATAAGTACGGAGAAATCA 57.842 33.333 0.00 0.00 0.00 2.57
529 530 4.632688 TCTGCCGCCAGTAAAAATAAGTAC 59.367 41.667 0.00 0.00 40.09 2.73
580 581 1.455849 CACACCCCGGATGCCATAT 59.544 57.895 0.73 0.00 0.00 1.78
581 582 2.751731 CCACACCCCGGATGCCATA 61.752 63.158 0.73 0.00 0.00 2.74
623 633 6.939163 AGGAGGCTATTATCAGCAAATAACAG 59.061 38.462 0.00 0.00 43.67 3.16
678 689 2.100584 CCTCAGAAGATCTTGGACTCGG 59.899 54.545 14.00 4.66 0.00 4.63
691 702 5.295292 ACGCATCACAATATTTCCTCAGAAG 59.705 40.000 0.00 0.00 32.35 2.85
713 724 2.096496 GCATTGATCCTTTGTCCAGACG 59.904 50.000 0.00 0.00 0.00 4.18
736 747 5.885912 TGCTAAAGAAAACAGAGGACTTGTT 59.114 36.000 0.00 0.00 0.00 2.83
766 777 5.973651 TCATTGCGAGTATTCTCATTCAC 57.026 39.130 0.00 0.00 40.44 3.18
770 781 9.722056 GTTTTATTTCATTGCGAGTATTCTCAT 57.278 29.630 0.00 0.00 40.44 2.90
782 793 7.489113 CCTGTAGGACATGTTTTATTTCATTGC 59.511 37.037 0.00 0.00 37.39 3.56
796 807 7.869937 CACTTCATTCTATACCTGTAGGACATG 59.130 40.741 4.64 0.00 38.94 3.21
801 812 6.412362 AGCACTTCATTCTATACCTGTAGG 57.588 41.667 0.00 0.00 42.17 3.18
804 815 6.273825 CGTAAGCACTTCATTCTATACCTGT 58.726 40.000 0.00 0.00 0.00 4.00
807 818 5.839621 TCCGTAAGCACTTCATTCTATACC 58.160 41.667 0.00 0.00 0.00 2.73
811 822 7.681939 ATTTTTCCGTAAGCACTTCATTCTA 57.318 32.000 0.00 0.00 0.00 2.10
821 832 3.191791 GCCCAAGTATTTTTCCGTAAGCA 59.808 43.478 0.00 0.00 0.00 3.91
851 862 6.146673 GCCTTCTTTTGATTTTTCCATGTCAG 59.853 38.462 0.00 0.00 0.00 3.51
856 867 7.544804 AGTAGCCTTCTTTTGATTTTTCCAT 57.455 32.000 0.00 0.00 0.00 3.41
860 871 8.478066 ACTTGAAGTAGCCTTCTTTTGATTTTT 58.522 29.630 0.00 0.00 46.07 1.94
921 932 4.040217 GCTGATAGACACTTCTCCATCCAT 59.960 45.833 0.00 0.00 32.75 3.41
937 948 2.103153 TCCTTACCCCCAGCTGATAG 57.897 55.000 17.39 5.22 0.00 2.08
942 953 1.456919 AAACTTCCTTACCCCCAGCT 58.543 50.000 0.00 0.00 0.00 4.24
948 959 5.183331 GGACTTGATCAAAACTTCCTTACCC 59.817 44.000 9.88 0.00 0.00 3.69
1043 1054 5.868801 CACCAAAATTTGCGAATTAGTCCAT 59.131 36.000 12.38 0.00 34.44 3.41
1045 1056 4.625311 CCACCAAAATTTGCGAATTAGTCC 59.375 41.667 12.38 0.00 34.44 3.85
1047 1058 4.562552 CCCCACCAAAATTTGCGAATTAGT 60.563 41.667 12.38 7.87 34.44 2.24
1051 1062 1.974236 TCCCCACCAAAATTTGCGAAT 59.026 42.857 0.00 0.00 0.00 3.34
1055 1066 1.202746 TGCTTCCCCACCAAAATTTGC 60.203 47.619 0.00 0.00 0.00 3.68
1121 1132 2.159198 CCTCCCATGAATTTTGGCTTCG 60.159 50.000 0.00 0.00 32.60 3.79
1139 1150 0.806492 GTCACGAAATCCGAGCCCTC 60.806 60.000 0.00 0.00 41.76 4.30
1146 1157 2.002586 AGCTCAATGTCACGAAATCCG 58.997 47.619 0.00 0.00 45.44 4.18
1161 1172 6.588719 AGCAACACCAAATTAAATAGCTCA 57.411 33.333 0.00 0.00 0.00 4.26
1244 1255 4.019321 TGCAGTTAGGATAATATCTGGCCC 60.019 45.833 0.00 0.00 0.00 5.80
1257 1268 0.984230 CCAGGAGGTTGCAGTTAGGA 59.016 55.000 0.00 0.00 0.00 2.94
1283 1294 0.179000 AGATGGTGACGATCCCAAGC 59.821 55.000 3.88 0.00 33.66 4.01
1287 1298 0.390860 CCTGAGATGGTGACGATCCC 59.609 60.000 3.88 0.00 0.00 3.85
1293 1304 2.246719 GCCATACCTGAGATGGTGAC 57.753 55.000 2.60 0.00 44.96 3.67
1350 1361 4.569162 CCAGAACCGATACGCTTGATTAAA 59.431 41.667 0.00 0.00 0.00 1.52
1361 1372 1.404391 TCGAAGCTCCAGAACCGATAC 59.596 52.381 0.00 0.00 0.00 2.24
1372 1383 2.213499 CCATACATTGGTCGAAGCTCC 58.787 52.381 0.00 0.00 40.99 4.70
1379 1390 3.192541 TGTCATCCCATACATTGGTCG 57.807 47.619 0.00 0.00 44.83 4.79
1394 1405 0.540365 CCCTGGCAACCACTTGTCAT 60.540 55.000 0.00 0.00 41.21 3.06
1401 1412 0.109723 TTGTAGTCCCTGGCAACCAC 59.890 55.000 0.00 0.00 0.00 4.16
1426 1438 2.045926 ACCGGCAGCAGATTGGTC 60.046 61.111 0.00 0.00 0.00 4.02
1442 1454 0.526662 CTGTCGGTGGGTCAGTAGAC 59.473 60.000 0.00 0.00 44.21 2.59
1459 1471 4.397481 TCAATGAGATCAGCCACTACTG 57.603 45.455 0.00 0.00 39.12 2.74
1486 1498 4.767928 ACTTGTCTGTTCCAGTCCTAGTAG 59.232 45.833 0.00 0.00 32.61 2.57
1519 1532 2.656947 TATCAGGGGCATTAAGGTGC 57.343 50.000 0.00 0.00 44.31 5.01
1523 1536 7.337942 GGATGACTTAATATCAGGGGCATTAAG 59.662 40.741 10.31 10.31 43.29 1.85
1527 1540 4.854436 AGGATGACTTAATATCAGGGGCAT 59.146 41.667 0.00 0.00 0.00 4.40
1541 1554 6.935208 GCTTACCGGAATATTTAGGATGACTT 59.065 38.462 9.46 0.00 0.00 3.01
1558 1572 0.828022 TGTACCCTCATGCTTACCGG 59.172 55.000 0.00 0.00 0.00 5.28
1561 1575 5.023533 TCATCTTGTACCCTCATGCTTAC 57.976 43.478 0.00 0.00 0.00 2.34
1562 1576 5.894298 ATCATCTTGTACCCTCATGCTTA 57.106 39.130 0.00 0.00 0.00 3.09
1575 1589 4.344679 TGCCAAGACCAAAAATCATCTTGT 59.655 37.500 10.89 0.00 44.28 3.16
1576 1590 4.687483 GTGCCAAGACCAAAAATCATCTTG 59.313 41.667 5.96 5.96 45.00 3.02
1609 1623 0.171455 CGAACAGAGAAGACCCCTCG 59.829 60.000 0.00 0.00 35.88 4.63
1623 1637 3.119280 TCATTCGGTAAGCAGATCGAACA 60.119 43.478 7.97 0.00 42.97 3.18
1645 1659 4.635765 TCTTTGAGATTTGATCGCGGAAAT 59.364 37.500 6.13 8.79 31.20 2.17
1646 1660 4.000325 TCTTTGAGATTTGATCGCGGAAA 59.000 39.130 6.13 3.65 31.20 3.13
1670 1684 2.354805 GGGCGATGTTCTAACCAGTCTT 60.355 50.000 0.00 0.00 0.00 3.01
1679 1693 2.950309 GAGTGACTAGGGCGATGTTCTA 59.050 50.000 0.00 0.00 0.00 2.10
1721 1735 5.308237 ACTTTCCAGAGTGTAGACCAAGATT 59.692 40.000 0.00 0.00 0.00 2.40
1802 1817 2.661718 TCATGGCGTACTGATCCAGTA 58.338 47.619 2.95 2.95 43.46 2.74
1804 1819 2.205074 GTTCATGGCGTACTGATCCAG 58.795 52.381 0.00 0.00 37.52 3.86
1805 1820 1.552792 TGTTCATGGCGTACTGATCCA 59.447 47.619 0.00 0.00 0.00 3.41
1806 1821 2.309528 TGTTCATGGCGTACTGATCC 57.690 50.000 0.00 0.00 0.00 3.36
1807 1822 3.000041 TGTTGTTCATGGCGTACTGATC 59.000 45.455 0.00 0.00 0.00 2.92
1808 1823 3.052455 TGTTGTTCATGGCGTACTGAT 57.948 42.857 0.00 0.00 0.00 2.90
1809 1824 2.535012 TGTTGTTCATGGCGTACTGA 57.465 45.000 0.00 0.00 0.00 3.41
1810 1825 4.260743 CCATATGTTGTTCATGGCGTACTG 60.261 45.833 1.24 0.00 37.91 2.74
1811 1826 3.876914 CCATATGTTGTTCATGGCGTACT 59.123 43.478 1.24 0.00 37.91 2.73
1812 1827 4.209452 CCATATGTTGTTCATGGCGTAC 57.791 45.455 1.24 0.00 37.91 3.67
1817 1832 2.296792 TCCGCCATATGTTGTTCATGG 58.703 47.619 1.24 0.00 41.85 3.66
1818 1833 4.276678 AGAATCCGCCATATGTTGTTCATG 59.723 41.667 1.24 0.00 37.91 3.07
1819 1834 4.464008 AGAATCCGCCATATGTTGTTCAT 58.536 39.130 1.24 0.00 40.25 2.57
1820 1835 3.884895 AGAATCCGCCATATGTTGTTCA 58.115 40.909 1.24 0.00 0.00 3.18
1821 1836 4.552767 CGAAGAATCCGCCATATGTTGTTC 60.553 45.833 1.24 2.92 0.00 3.18
1822 1837 3.312421 CGAAGAATCCGCCATATGTTGTT 59.688 43.478 1.24 0.00 0.00 2.83
1823 1838 2.872245 CGAAGAATCCGCCATATGTTGT 59.128 45.455 1.24 0.00 0.00 3.32
1824 1839 2.224079 CCGAAGAATCCGCCATATGTTG 59.776 50.000 1.24 0.00 0.00 3.33
1825 1840 2.158813 ACCGAAGAATCCGCCATATGTT 60.159 45.455 1.24 0.00 0.00 2.71
1838 1853 3.624326 CAAATTGTGCAGACCGAAGAA 57.376 42.857 0.00 0.00 0.00 2.52
1861 1876 4.159135 GGTGCCAAGAATCAACATCAGAAT 59.841 41.667 0.00 0.00 0.00 2.40
1864 1879 2.821378 TGGTGCCAAGAATCAACATCAG 59.179 45.455 0.00 0.00 0.00 2.90
1882 1897 2.747446 CGGCAGTTTAGCAAATAGTGGT 59.253 45.455 0.00 0.00 41.93 4.16
1888 1903 1.750778 CCATCCGGCAGTTTAGCAAAT 59.249 47.619 0.00 0.00 35.83 2.32
1902 1917 0.875908 CATACACACCTCGCCATCCG 60.876 60.000 0.00 0.00 38.61 4.18
1983 1998 9.403110 GAAAAGCCATAGTTTTGCATCATATAG 57.597 33.333 0.00 0.00 0.00 1.31
1984 1999 9.135189 AGAAAAGCCATAGTTTTGCATCATATA 57.865 29.630 0.00 0.00 0.00 0.86
1985 2000 7.924412 CAGAAAAGCCATAGTTTTGCATCATAT 59.076 33.333 0.00 0.00 0.00 1.78
1986 2001 7.259882 CAGAAAAGCCATAGTTTTGCATCATA 58.740 34.615 0.00 0.00 0.00 2.15
1987 2002 6.103997 CAGAAAAGCCATAGTTTTGCATCAT 58.896 36.000 0.00 0.00 0.00 2.45
1988 2003 5.472148 CAGAAAAGCCATAGTTTTGCATCA 58.528 37.500 0.00 0.00 0.00 3.07
1989 2004 4.866486 CCAGAAAAGCCATAGTTTTGCATC 59.134 41.667 0.00 0.00 0.00 3.91
1990 2005 4.284234 ACCAGAAAAGCCATAGTTTTGCAT 59.716 37.500 0.00 0.00 0.00 3.96
1991 2006 3.640967 ACCAGAAAAGCCATAGTTTTGCA 59.359 39.130 0.00 0.00 0.00 4.08
1992 2007 4.257267 ACCAGAAAAGCCATAGTTTTGC 57.743 40.909 0.00 0.00 0.00 3.68
1993 2008 5.600696 ACAACCAGAAAAGCCATAGTTTTG 58.399 37.500 0.00 0.00 0.00 2.44
1994 2009 5.869649 ACAACCAGAAAAGCCATAGTTTT 57.130 34.783 0.00 0.00 0.00 2.43
1995 2010 5.507315 CGAACAACCAGAAAAGCCATAGTTT 60.507 40.000 0.00 0.00 0.00 2.66
1996 2011 4.023193 CGAACAACCAGAAAAGCCATAGTT 60.023 41.667 0.00 0.00 0.00 2.24
1997 2012 3.502211 CGAACAACCAGAAAAGCCATAGT 59.498 43.478 0.00 0.00 0.00 2.12
2041 2056 2.390225 AGTAACCAAAACCCATGCCA 57.610 45.000 0.00 0.00 0.00 4.92
2043 2058 5.359576 TCATCATAGTAACCAAAACCCATGC 59.640 40.000 0.00 0.00 0.00 4.06
2045 2060 7.353525 TGATCATCATAGTAACCAAAACCCAT 58.646 34.615 0.00 0.00 0.00 4.00
2046 2061 6.726379 TGATCATCATAGTAACCAAAACCCA 58.274 36.000 0.00 0.00 0.00 4.51
2055 2070 9.243637 GACTCTGAAACTGATCATCATAGTAAC 57.756 37.037 13.02 2.79 32.65 2.50
2071 2123 9.685828 GATATAGTAGACAATGGACTCTGAAAC 57.314 37.037 0.00 0.00 0.00 2.78
2107 2159 1.644337 TCCAGCTCCTCAAGGTACCTA 59.356 52.381 16.67 0.00 33.36 3.08
2124 2176 1.522668 CCGAACAGAAGCAATGTCCA 58.477 50.000 0.00 0.00 0.00 4.02
2159 2211 0.040246 GCTATCGGTACAGACGGAGC 60.040 60.000 0.00 4.42 38.21 4.70
2210 2262 2.035704 TGACATTCAGTTTTGCCGCATT 59.964 40.909 0.00 0.00 0.00 3.56
2231 2283 3.309848 CCCAGACTTGAAATACCCCCATT 60.310 47.826 0.00 0.00 0.00 3.16
2284 2336 4.319766 CCAAGAAAATGTCCAGACTTGTCG 60.320 45.833 0.00 0.00 34.77 4.35
2328 2380 0.690762 GGCTGGGTTGACAAGTCCTA 59.309 55.000 8.45 0.00 0.00 2.94
2330 2382 0.890996 CTGGCTGGGTTGACAAGTCC 60.891 60.000 0.00 0.00 0.00 3.85
2339 2391 1.763770 CCTCAAGACTGGCTGGGTT 59.236 57.895 0.00 0.00 0.00 4.11
2341 2393 2.045536 GCCTCAAGACTGGCTGGG 60.046 66.667 0.00 0.00 45.26 4.45
2345 2397 3.426568 GTGCGCCTCAAGACTGGC 61.427 66.667 4.18 0.00 45.25 4.85
2380 2432 1.277842 TGTAAATCTTGAGCGAGGGCA 59.722 47.619 0.00 0.00 43.41 5.36
2381 2433 1.666189 GTGTAAATCTTGAGCGAGGGC 59.334 52.381 0.00 0.00 40.37 5.19
2382 2434 2.093447 AGGTGTAAATCTTGAGCGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
2383 2435 3.118956 AGAGGTGTAAATCTTGAGCGAGG 60.119 47.826 0.00 0.00 0.00 4.63
2384 2436 4.116747 AGAGGTGTAAATCTTGAGCGAG 57.883 45.455 0.00 0.00 0.00 5.03
2385 2437 4.098044 CCTAGAGGTGTAAATCTTGAGCGA 59.902 45.833 0.00 0.00 0.00 4.93
2386 2438 4.098044 TCCTAGAGGTGTAAATCTTGAGCG 59.902 45.833 0.00 0.00 36.34 5.03
2387 2439 5.599999 TCCTAGAGGTGTAAATCTTGAGC 57.400 43.478 0.00 0.00 36.34 4.26
2388 2440 7.176589 AGTTCCTAGAGGTGTAAATCTTGAG 57.823 40.000 0.00 0.00 36.34 3.02
2389 2441 7.016268 ACAAGTTCCTAGAGGTGTAAATCTTGA 59.984 37.037 0.00 0.00 36.34 3.02
2390 2442 7.162082 ACAAGTTCCTAGAGGTGTAAATCTTG 58.838 38.462 0.00 0.00 36.34 3.02
2391 2443 7.317722 ACAAGTTCCTAGAGGTGTAAATCTT 57.682 36.000 0.00 0.00 36.34 2.40
2392 2444 6.936968 ACAAGTTCCTAGAGGTGTAAATCT 57.063 37.500 0.00 0.00 36.34 2.40
2393 2445 6.935208 ACAACAAGTTCCTAGAGGTGTAAATC 59.065 38.462 0.00 0.00 36.34 2.17
2394 2446 6.838382 ACAACAAGTTCCTAGAGGTGTAAAT 58.162 36.000 0.00 0.00 36.34 1.40
2395 2447 6.243216 ACAACAAGTTCCTAGAGGTGTAAA 57.757 37.500 0.00 0.00 36.34 2.01
2396 2448 5.881923 ACAACAAGTTCCTAGAGGTGTAA 57.118 39.130 0.00 0.00 36.34 2.41
2397 2449 5.607477 CAACAACAAGTTCCTAGAGGTGTA 58.393 41.667 0.00 0.00 38.74 2.90
2398 2450 4.451900 CAACAACAAGTTCCTAGAGGTGT 58.548 43.478 0.00 0.00 38.74 4.16
2399 2451 3.251004 GCAACAACAAGTTCCTAGAGGTG 59.749 47.826 0.00 0.00 38.74 4.00
2400 2452 3.477530 GCAACAACAAGTTCCTAGAGGT 58.522 45.455 0.00 0.00 38.74 3.85
2401 2453 2.814336 GGCAACAACAAGTTCCTAGAGG 59.186 50.000 0.00 0.00 38.74 3.69
2402 2454 3.744660 AGGCAACAACAAGTTCCTAGAG 58.255 45.455 0.00 0.00 38.74 2.43
2403 2455 3.135712 TGAGGCAACAACAAGTTCCTAGA 59.864 43.478 0.00 0.00 38.74 2.43
2404 2456 3.476552 TGAGGCAACAACAAGTTCCTAG 58.523 45.455 0.00 0.00 38.74 3.02
2405 2457 3.135712 TCTGAGGCAACAACAAGTTCCTA 59.864 43.478 0.00 0.00 38.74 2.94
2406 2458 2.092429 TCTGAGGCAACAACAAGTTCCT 60.092 45.455 0.00 0.00 38.74 3.36
2407 2459 2.033424 GTCTGAGGCAACAACAAGTTCC 59.967 50.000 0.00 0.00 38.74 3.62
2408 2460 2.945668 AGTCTGAGGCAACAACAAGTTC 59.054 45.455 0.00 0.00 38.74 3.01
2409 2461 2.684881 CAGTCTGAGGCAACAACAAGTT 59.315 45.455 0.00 0.00 42.42 2.66
2410 2462 2.292267 CAGTCTGAGGCAACAACAAGT 58.708 47.619 0.00 0.00 41.41 3.16
2411 2463 1.002033 GCAGTCTGAGGCAACAACAAG 60.002 52.381 3.32 0.00 41.41 3.16
2412 2464 1.024271 GCAGTCTGAGGCAACAACAA 58.976 50.000 3.32 0.00 41.41 2.83
2413 2465 0.107263 TGCAGTCTGAGGCAACAACA 60.107 50.000 3.32 0.00 37.03 3.33
2414 2466 1.068748 CATGCAGTCTGAGGCAACAAC 60.069 52.381 3.32 0.00 44.20 3.32
2415 2467 1.241165 CATGCAGTCTGAGGCAACAA 58.759 50.000 3.32 0.00 44.20 2.83
2416 2468 0.607217 CCATGCAGTCTGAGGCAACA 60.607 55.000 3.32 0.00 44.20 3.33
2417 2469 0.321919 TCCATGCAGTCTGAGGCAAC 60.322 55.000 3.32 0.00 44.20 4.17
2418 2470 0.401356 TTCCATGCAGTCTGAGGCAA 59.599 50.000 3.32 0.00 44.20 4.52
2419 2471 0.035725 CTTCCATGCAGTCTGAGGCA 60.036 55.000 3.32 6.42 45.23 4.75
2420 2472 0.035630 ACTTCCATGCAGTCTGAGGC 60.036 55.000 3.32 0.00 0.00 4.70
2421 2473 1.678123 CCACTTCCATGCAGTCTGAGG 60.678 57.143 3.32 2.03 0.00 3.86
2422 2474 1.002888 ACCACTTCCATGCAGTCTGAG 59.997 52.381 3.32 0.00 0.00 3.35
2423 2475 1.059098 ACCACTTCCATGCAGTCTGA 58.941 50.000 3.32 0.00 0.00 3.27
2424 2476 2.744202 GTTACCACTTCCATGCAGTCTG 59.256 50.000 0.00 0.00 0.00 3.51
2425 2477 2.639839 AGTTACCACTTCCATGCAGTCT 59.360 45.455 0.00 0.00 0.00 3.24
2426 2478 3.059352 AGTTACCACTTCCATGCAGTC 57.941 47.619 0.00 0.00 0.00 3.51
2427 2479 4.634012 TTAGTTACCACTTCCATGCAGT 57.366 40.909 0.00 0.00 34.06 4.40
2428 2480 7.807977 AATATTAGTTACCACTTCCATGCAG 57.192 36.000 0.00 0.00 34.06 4.41
2429 2481 9.337396 CTTAATATTAGTTACCACTTCCATGCA 57.663 33.333 0.00 0.00 34.06 3.96
2430 2482 9.555727 TCTTAATATTAGTTACCACTTCCATGC 57.444 33.333 0.00 0.00 34.06 4.06
2434 2486 9.557061 CCCTTCTTAATATTAGTTACCACTTCC 57.443 37.037 0.00 0.00 34.06 3.46
2437 2489 8.430431 GCTCCCTTCTTAATATTAGTTACCACT 58.570 37.037 0.00 0.00 36.99 4.00
2438 2490 7.660617 GGCTCCCTTCTTAATATTAGTTACCAC 59.339 40.741 0.00 0.00 0.00 4.16
2439 2491 7.742767 GGCTCCCTTCTTAATATTAGTTACCA 58.257 38.462 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.