Multiple sequence alignment - TraesCS6D01G224300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G224300 chr6D 100.000 4691 0 0 1 4691 316228151 316232841 0.000000e+00 8663.0
1 TraesCS6D01G224300 chr6D 94.000 100 4 2 4143 4241 163130246 163130344 2.920000e-32 150.0
2 TraesCS6D01G224300 chr6A 94.079 1976 78 20 1 1941 454090447 454092418 0.000000e+00 2964.0
3 TraesCS6D01G224300 chr6A 94.766 1834 70 10 2278 4088 454092417 454094247 0.000000e+00 2832.0
4 TraesCS6D01G224300 chr6A 95.556 180 7 1 4377 4555 454094248 454094427 2.140000e-73 287.0
5 TraesCS6D01G224300 chr6B 93.370 1840 88 11 2278 4088 508536880 508535046 0.000000e+00 2691.0
6 TraesCS6D01G224300 chr6B 96.206 1107 23 3 845 1942 508537974 508536878 0.000000e+00 1794.0
7 TraesCS6D01G224300 chr6B 81.101 672 100 15 116 772 30128513 30127854 3.240000e-141 512.0
8 TraesCS6D01G224300 chr6B 94.081 321 12 3 4377 4691 508535045 508534726 9.130000e-132 481.0
9 TraesCS6D01G224300 chr4D 90.385 520 22 7 2700 3201 354990611 354991120 0.000000e+00 658.0
10 TraesCS6D01G224300 chr3B 86.644 599 72 4 116 708 564201030 564200434 0.000000e+00 656.0
11 TraesCS6D01G224300 chr3B 93.617 141 9 0 1942 2082 175103400 175103540 1.320000e-50 211.0
12 TraesCS6D01G224300 chr3B 98.876 89 1 0 4147 4235 723452860 723452948 4.860000e-35 159.0
13 TraesCS6D01G224300 chr5D 86.333 600 69 8 116 708 400417445 400416852 3.960000e-180 641.0
14 TraesCS6D01G224300 chr5D 90.000 200 18 2 2085 2284 30728630 30728827 1.670000e-64 257.0
15 TraesCS6D01G224300 chr5D 95.699 93 3 1 4139 4231 240428133 240428042 1.050000e-31 148.0
16 TraesCS6D01G224300 chr2A 85.839 572 64 10 116 676 754348120 754347555 4.040000e-165 592.0
17 TraesCS6D01G224300 chr2A 91.892 185 14 1 2088 2271 617759723 617759907 1.670000e-64 257.0
18 TraesCS6D01G224300 chr7D 85.217 575 69 8 109 676 579329659 579330224 1.130000e-160 577.0
19 TraesCS6D01G224300 chr7D 89.744 195 17 3 2082 2274 161459251 161459058 3.630000e-61 246.0
20 TraesCS6D01G224300 chr7D 95.890 146 6 0 4229 4374 594137794 594137939 2.180000e-58 237.0
21 TraesCS6D01G224300 chr7D 94.521 146 7 1 1942 2087 601783232 601783376 1.700000e-54 224.0
22 TraesCS6D01G224300 chr7D 95.745 94 3 1 4146 4239 141292173 141292081 2.920000e-32 150.0
23 TraesCS6D01G224300 chr7D 93.878 98 4 1 4147 4242 79628428 79628331 3.780000e-31 147.0
24 TraesCS6D01G224300 chr7D 98.361 61 0 1 4089 4148 594137736 594137796 6.420000e-19 106.0
25 TraesCS6D01G224300 chr3D 85.062 569 69 9 116 676 460450869 460450309 2.450000e-157 566.0
26 TraesCS6D01G224300 chr3D 84.859 568 71 8 116 676 460452033 460451474 4.100000e-155 558.0
27 TraesCS6D01G224300 chr3D 91.351 185 14 2 2089 2273 475555033 475555215 7.790000e-63 252.0
28 TraesCS6D01G224300 chr3D 94.776 134 7 0 1951 2084 26227718 26227585 4.760000e-50 209.0
29 TraesCS6D01G224300 chr3D 94.792 96 4 1 4147 4242 526509381 526509287 1.050000e-31 148.0
30 TraesCS6D01G224300 chr5A 85.524 525 61 7 160 676 316096890 316097407 6.910000e-148 534.0
31 TraesCS6D01G224300 chr5A 93.750 144 9 0 1939 2082 620401300 620401443 2.840000e-52 217.0
32 TraesCS6D01G224300 chrUn 93.407 182 11 1 2092 2273 70301615 70301795 7.740000e-68 268.0
33 TraesCS6D01G224300 chr7A 91.327 196 14 3 2085 2278 707996100 707996294 1.000000e-66 265.0
34 TraesCS6D01G224300 chr7A 92.391 184 11 3 2093 2273 730830857 730830674 4.660000e-65 259.0
35 TraesCS6D01G224300 chr7A 91.099 191 10 5 2084 2271 444983876 444984062 7.790000e-63 252.0
36 TraesCS6D01G224300 chr7A 92.233 103 6 2 4134 4235 477234835 477234936 1.360000e-30 145.0
37 TraesCS6D01G224300 chr7A 93.333 60 4 0 4089 4148 156869517 156869458 6.470000e-14 89.8
38 TraesCS6D01G224300 chr2D 90.909 198 17 1 2083 2280 409579375 409579179 1.000000e-66 265.0
39 TraesCS6D01G224300 chr2D 98.837 86 1 0 4146 4231 53145726 53145811 2.260000e-33 154.0
40 TraesCS6D01G224300 chr4B 93.919 148 9 0 4228 4375 30014254 30014107 1.700000e-54 224.0
41 TraesCS6D01G224300 chr4B 95.699 93 3 1 4147 4239 104337330 104337421 1.050000e-31 148.0
42 TraesCS6D01G224300 chr4B 92.857 56 4 0 4093 4148 30014306 30014251 1.080000e-11 82.4
43 TraesCS6D01G224300 chr2B 93.243 148 10 0 1937 2084 521973701 521973848 7.900000e-53 219.0
44 TraesCS6D01G224300 chr2B 92.361 144 11 0 1939 2082 166284179 166284322 6.150000e-49 206.0
45 TraesCS6D01G224300 chr1B 93.151 146 10 0 4229 4374 289144903 289144758 1.020000e-51 215.0
46 TraesCS6D01G224300 chr1B 94.737 57 3 0 4095 4151 289144954 289144898 6.470000e-14 89.8
47 TraesCS6D01G224300 chr7B 93.571 140 9 0 1943 2082 36499135 36498996 4.760000e-50 209.0
48 TraesCS6D01G224300 chr7B 91.724 145 10 1 1941 2085 722246231 722246373 2.860000e-47 200.0
49 TraesCS6D01G224300 chr3A 91.216 148 12 1 1939 2086 691502637 691502783 2.860000e-47 200.0
50 TraesCS6D01G224300 chr4A 94.340 53 3 0 4096 4148 621135691 621135743 1.080000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G224300 chr6D 316228151 316232841 4690 False 8663.000000 8663 100.000000 1 4691 1 chr6D.!!$F2 4690
1 TraesCS6D01G224300 chr6A 454090447 454094427 3980 False 2027.666667 2964 94.800333 1 4555 3 chr6A.!!$F1 4554
2 TraesCS6D01G224300 chr6B 508534726 508537974 3248 True 1655.333333 2691 94.552333 845 4691 3 chr6B.!!$R2 3846
3 TraesCS6D01G224300 chr6B 30127854 30128513 659 True 512.000000 512 81.101000 116 772 1 chr6B.!!$R1 656
4 TraesCS6D01G224300 chr4D 354990611 354991120 509 False 658.000000 658 90.385000 2700 3201 1 chr4D.!!$F1 501
5 TraesCS6D01G224300 chr3B 564200434 564201030 596 True 656.000000 656 86.644000 116 708 1 chr3B.!!$R1 592
6 TraesCS6D01G224300 chr5D 400416852 400417445 593 True 641.000000 641 86.333000 116 708 1 chr5D.!!$R2 592
7 TraesCS6D01G224300 chr2A 754347555 754348120 565 True 592.000000 592 85.839000 116 676 1 chr2A.!!$R1 560
8 TraesCS6D01G224300 chr7D 579329659 579330224 565 False 577.000000 577 85.217000 109 676 1 chr7D.!!$F1 567
9 TraesCS6D01G224300 chr3D 460450309 460452033 1724 True 562.000000 566 84.960500 116 676 2 chr3D.!!$R3 560
10 TraesCS6D01G224300 chr5A 316096890 316097407 517 False 534.000000 534 85.524000 160 676 1 chr5A.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.031994 GACACCAAACCATGCACACC 59.968 55.0 0.00 0.0 0.00 4.16 F
657 1845 0.249405 TAACGCTTCGGTGGTTTCGT 60.249 50.0 0.00 0.0 0.00 3.85 F
2034 3255 0.108520 TTTAGCCTACAACTCCGCCG 60.109 55.0 0.00 0.0 0.00 6.46 F
2108 3329 0.784495 AGGGGTCTGTCTAGGACACA 59.216 55.0 2.82 0.0 37.67 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 3236 0.108520 CGGCGGAGTTGTAGGCTAAA 60.109 55.0 0.0 0.0 0.0 1.85 R
2202 3423 0.457443 GCTCCCACAAATAAGGCAGC 59.543 55.0 0.0 0.0 0.0 5.25 R
3528 4768 1.079503 GCAGTTCCATTCGGAGTGTC 58.920 55.0 0.0 0.0 44.1 3.67 R
4091 5346 0.032952 TAGCACGAGAACCAAACGCT 59.967 50.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.031994 GACACCAAACCATGCACACC 59.968 55.000 0.00 0.00 0.00 4.16
39 40 4.439057 ACCGATATATGGTGTGTGTTGTC 58.561 43.478 6.17 0.00 38.60 3.18
40 41 3.807622 CCGATATATGGTGTGTGTTGTCC 59.192 47.826 0.00 0.00 0.00 4.02
61 62 3.550820 CCCGAATGATTGTATCCACCAA 58.449 45.455 0.00 0.00 0.00 3.67
62 63 4.144297 CCCGAATGATTGTATCCACCAAT 58.856 43.478 0.00 0.00 35.30 3.16
94 98 8.606602 ACAATGAAATCTCTTTTTCACAAAAGC 58.393 29.630 2.04 0.00 45.55 3.51
98 102 8.997323 TGAAATCTCTTTTTCACAAAAGCAAAA 58.003 25.926 3.05 0.00 46.01 2.44
229 1398 4.813027 TGTATTTTTCGTCTCCTTACGCT 58.187 39.130 0.00 0.00 42.56 5.07
257 1426 1.677966 CCATGGCTGCTGCTCAAGT 60.678 57.895 15.64 0.00 39.59 3.16
278 1447 4.845580 CATGCCCGAGCTCCGCTT 62.846 66.667 18.40 11.25 39.88 4.68
290 1459 3.177600 CCGCTTCGGTCACCATTG 58.822 61.111 0.00 0.00 42.73 2.82
510 1686 1.613437 CAAAAGTCCTCCCGCAACAAT 59.387 47.619 0.00 0.00 0.00 2.71
655 1843 3.547649 AAATAACGCTTCGGTGGTTTC 57.452 42.857 0.00 0.00 0.00 2.78
657 1845 0.249405 TAACGCTTCGGTGGTTTCGT 60.249 50.000 0.00 0.00 0.00 3.85
733 1923 2.842496 AGAGGCACCTCATTTGAGATCA 59.158 45.455 18.67 0.00 44.74 2.92
734 1924 2.941720 GAGGCACCTCATTTGAGATCAC 59.058 50.000 11.92 0.00 44.74 3.06
747 1937 1.723542 GAGATCACGCGGCTATTCATG 59.276 52.381 12.47 0.00 0.00 3.07
797 2009 4.303282 GCTGGCCGTTTTTGATAGAAAAA 58.697 39.130 0.00 0.00 30.95 1.94
837 2049 1.640917 TACCCGGAGCAAAGAGAACT 58.359 50.000 0.73 0.00 0.00 3.01
840 2052 1.270839 CCCGGAGCAAAGAGAACTTGA 60.271 52.381 0.73 0.00 36.39 3.02
987 2199 0.624500 CTCCATTTCCCCTCCCCTCA 60.625 60.000 0.00 0.00 0.00 3.86
1940 3161 2.594592 GCCCACCTGTTGCGACTT 60.595 61.111 5.50 0.00 0.00 3.01
1941 3162 1.302192 GCCCACCTGTTGCGACTTA 60.302 57.895 5.50 0.00 0.00 2.24
1942 3163 1.298859 GCCCACCTGTTGCGACTTAG 61.299 60.000 5.50 0.00 0.00 2.18
1943 3164 0.673644 CCCACCTGTTGCGACTTAGG 60.674 60.000 5.50 7.27 36.39 2.69
1944 3165 1.298859 CCACCTGTTGCGACTTAGGC 61.299 60.000 9.86 0.00 33.57 3.93
1945 3166 1.003718 ACCTGTTGCGACTTAGGCC 60.004 57.895 9.86 0.00 33.57 5.19
1946 3167 1.745489 CCTGTTGCGACTTAGGCCC 60.745 63.158 5.50 0.00 0.00 5.80
1947 3168 1.296715 CTGTTGCGACTTAGGCCCT 59.703 57.895 5.50 0.00 0.00 5.19
1948 3169 1.003839 TGTTGCGACTTAGGCCCTG 60.004 57.895 5.50 0.00 0.00 4.45
1949 3170 1.003718 GTTGCGACTTAGGCCCTGT 60.004 57.895 0.00 0.00 0.00 4.00
1950 3171 0.605589 GTTGCGACTTAGGCCCTGTT 60.606 55.000 0.00 0.00 0.00 3.16
1951 3172 0.321298 TTGCGACTTAGGCCCTGTTC 60.321 55.000 0.00 0.00 0.00 3.18
1952 3173 1.810030 GCGACTTAGGCCCTGTTCG 60.810 63.158 0.00 4.39 0.00 3.95
1953 3174 1.153628 CGACTTAGGCCCTGTTCGG 60.154 63.158 0.00 0.00 0.00 4.30
1954 3175 1.601419 CGACTTAGGCCCTGTTCGGA 61.601 60.000 0.00 0.00 33.16 4.55
1955 3176 0.831307 GACTTAGGCCCTGTTCGGAT 59.169 55.000 0.00 0.00 33.16 4.18
1956 3177 2.037144 GACTTAGGCCCTGTTCGGATA 58.963 52.381 0.00 0.00 33.16 2.59
1957 3178 2.633481 GACTTAGGCCCTGTTCGGATAT 59.367 50.000 0.00 0.00 33.16 1.63
1958 3179 2.633481 ACTTAGGCCCTGTTCGGATATC 59.367 50.000 0.00 0.00 33.16 1.63
1959 3180 1.640917 TAGGCCCTGTTCGGATATCC 58.359 55.000 12.14 12.14 33.16 2.59
1960 3181 0.399949 AGGCCCTGTTCGGATATCCA 60.400 55.000 21.70 6.20 35.14 3.41
1961 3182 0.250338 GGCCCTGTTCGGATATCCAC 60.250 60.000 21.70 13.22 35.14 4.02
1962 3183 0.250338 GCCCTGTTCGGATATCCACC 60.250 60.000 21.70 8.72 35.14 4.61
1963 3184 1.128200 CCCTGTTCGGATATCCACCA 58.872 55.000 21.70 12.60 35.14 4.17
1964 3185 1.070758 CCCTGTTCGGATATCCACCAG 59.929 57.143 21.70 19.94 35.14 4.00
1965 3186 2.039418 CCTGTTCGGATATCCACCAGA 58.961 52.381 23.90 11.81 35.14 3.86
1966 3187 2.634940 CCTGTTCGGATATCCACCAGAT 59.365 50.000 23.90 0.00 35.12 2.90
1967 3188 3.832490 CCTGTTCGGATATCCACCAGATA 59.168 47.826 23.90 7.39 41.73 1.98
1968 3189 4.322049 CCTGTTCGGATATCCACCAGATAC 60.322 50.000 23.90 13.71 40.31 2.24
1969 3190 3.254903 TGTTCGGATATCCACCAGATACG 59.745 47.826 21.70 4.39 40.31 3.06
1970 3191 3.150458 TCGGATATCCACCAGATACGT 57.850 47.619 21.70 0.00 40.31 3.57
1971 3192 2.817844 TCGGATATCCACCAGATACGTG 59.182 50.000 21.70 0.82 40.31 4.49
1981 3202 4.621991 CACCAGATACGTGGAATTAGAGG 58.378 47.826 0.00 0.00 40.44 3.69
1982 3203 4.341235 CACCAGATACGTGGAATTAGAGGA 59.659 45.833 0.00 0.00 40.44 3.71
1983 3204 4.585162 ACCAGATACGTGGAATTAGAGGAG 59.415 45.833 0.00 0.00 40.44 3.69
1984 3205 4.585162 CCAGATACGTGGAATTAGAGGAGT 59.415 45.833 0.00 0.00 40.44 3.85
1985 3206 5.069251 CCAGATACGTGGAATTAGAGGAGTT 59.931 44.000 0.00 0.00 40.44 3.01
1986 3207 5.980116 CAGATACGTGGAATTAGAGGAGTTG 59.020 44.000 0.00 0.00 0.00 3.16
1987 3208 2.973945 ACGTGGAATTAGAGGAGTTGC 58.026 47.619 0.00 0.00 0.00 4.17
1988 3209 2.301870 ACGTGGAATTAGAGGAGTTGCA 59.698 45.455 0.00 0.00 0.00 4.08
1989 3210 2.932614 CGTGGAATTAGAGGAGTTGCAG 59.067 50.000 0.00 0.00 0.00 4.41
1990 3211 3.368427 CGTGGAATTAGAGGAGTTGCAGA 60.368 47.826 0.00 0.00 0.00 4.26
1991 3212 4.187694 GTGGAATTAGAGGAGTTGCAGAG 58.812 47.826 0.00 0.00 0.00 3.35
1992 3213 3.202097 GGAATTAGAGGAGTTGCAGAGC 58.798 50.000 0.00 0.00 0.00 4.09
1993 3214 3.369892 GGAATTAGAGGAGTTGCAGAGCA 60.370 47.826 0.00 0.00 36.47 4.26
1994 3215 2.751166 TTAGAGGAGTTGCAGAGCAC 57.249 50.000 0.00 0.00 38.71 4.40
1995 3216 0.898320 TAGAGGAGTTGCAGAGCACC 59.102 55.000 0.00 0.00 38.71 5.01
1996 3217 0.835543 AGAGGAGTTGCAGAGCACCT 60.836 55.000 0.00 0.00 38.71 4.00
1997 3218 0.898320 GAGGAGTTGCAGAGCACCTA 59.102 55.000 0.33 0.00 38.71 3.08
1998 3219 1.276421 GAGGAGTTGCAGAGCACCTAA 59.724 52.381 0.33 0.00 38.71 2.69
1999 3220 1.912043 AGGAGTTGCAGAGCACCTAAT 59.088 47.619 0.00 0.00 38.71 1.73
2000 3221 2.307098 AGGAGTTGCAGAGCACCTAATT 59.693 45.455 0.00 0.00 38.71 1.40
2001 3222 3.084786 GGAGTTGCAGAGCACCTAATTT 58.915 45.455 0.00 0.00 38.71 1.82
2002 3223 3.127721 GGAGTTGCAGAGCACCTAATTTC 59.872 47.826 0.00 0.00 38.71 2.17
2003 3224 3.084786 AGTTGCAGAGCACCTAATTTCC 58.915 45.455 0.00 0.00 38.71 3.13
2004 3225 2.819608 GTTGCAGAGCACCTAATTTCCA 59.180 45.455 0.00 0.00 38.71 3.53
2005 3226 3.153369 TGCAGAGCACCTAATTTCCAA 57.847 42.857 0.00 0.00 31.71 3.53
2006 3227 2.819608 TGCAGAGCACCTAATTTCCAAC 59.180 45.455 0.00 0.00 31.71 3.77
2007 3228 3.084786 GCAGAGCACCTAATTTCCAACT 58.915 45.455 0.00 0.00 0.00 3.16
2008 3229 3.127721 GCAGAGCACCTAATTTCCAACTC 59.872 47.826 0.00 0.00 0.00 3.01
2009 3230 3.691609 CAGAGCACCTAATTTCCAACTCC 59.308 47.826 0.00 0.00 0.00 3.85
2010 3231 3.330701 AGAGCACCTAATTTCCAACTCCA 59.669 43.478 0.00 0.00 0.00 3.86
2011 3232 3.690460 AGCACCTAATTTCCAACTCCAG 58.310 45.455 0.00 0.00 0.00 3.86
2012 3233 3.074538 AGCACCTAATTTCCAACTCCAGT 59.925 43.478 0.00 0.00 0.00 4.00
2013 3234 4.288626 AGCACCTAATTTCCAACTCCAGTA 59.711 41.667 0.00 0.00 0.00 2.74
2014 3235 5.044846 AGCACCTAATTTCCAACTCCAGTAT 60.045 40.000 0.00 0.00 0.00 2.12
2015 3236 5.652452 GCACCTAATTTCCAACTCCAGTATT 59.348 40.000 0.00 0.00 0.00 1.89
2016 3237 6.152831 GCACCTAATTTCCAACTCCAGTATTT 59.847 38.462 0.00 0.00 0.00 1.40
2017 3238 7.309805 GCACCTAATTTCCAACTCCAGTATTTT 60.310 37.037 0.00 0.00 0.00 1.82
2018 3239 9.238368 CACCTAATTTCCAACTCCAGTATTTTA 57.762 33.333 0.00 0.00 0.00 1.52
2019 3240 9.462606 ACCTAATTTCCAACTCCAGTATTTTAG 57.537 33.333 0.00 0.00 0.00 1.85
2020 3241 8.406297 CCTAATTTCCAACTCCAGTATTTTAGC 58.594 37.037 0.00 0.00 0.00 3.09
2021 3242 6.775594 ATTTCCAACTCCAGTATTTTAGCC 57.224 37.500 0.00 0.00 0.00 3.93
2022 3243 5.514500 TTCCAACTCCAGTATTTTAGCCT 57.486 39.130 0.00 0.00 0.00 4.58
2023 3244 6.630203 TTCCAACTCCAGTATTTTAGCCTA 57.370 37.500 0.00 0.00 0.00 3.93
2024 3245 5.985911 TCCAACTCCAGTATTTTAGCCTAC 58.014 41.667 0.00 0.00 0.00 3.18
2025 3246 5.486063 TCCAACTCCAGTATTTTAGCCTACA 59.514 40.000 0.00 0.00 0.00 2.74
2026 3247 6.013206 TCCAACTCCAGTATTTTAGCCTACAA 60.013 38.462 0.00 0.00 0.00 2.41
2027 3248 6.093633 CCAACTCCAGTATTTTAGCCTACAAC 59.906 42.308 0.00 0.00 0.00 3.32
2028 3249 6.622427 ACTCCAGTATTTTAGCCTACAACT 57.378 37.500 0.00 0.00 0.00 3.16
2029 3250 6.641474 ACTCCAGTATTTTAGCCTACAACTC 58.359 40.000 0.00 0.00 0.00 3.01
2030 3251 5.985911 TCCAGTATTTTAGCCTACAACTCC 58.014 41.667 0.00 0.00 0.00 3.85
2031 3252 4.809426 CCAGTATTTTAGCCTACAACTCCG 59.191 45.833 0.00 0.00 0.00 4.63
2032 3253 4.270325 CAGTATTTTAGCCTACAACTCCGC 59.730 45.833 0.00 0.00 0.00 5.54
2033 3254 2.103537 TTTTAGCCTACAACTCCGCC 57.896 50.000 0.00 0.00 0.00 6.13
2034 3255 0.108520 TTTAGCCTACAACTCCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
2035 3256 1.952102 TTAGCCTACAACTCCGCCGG 61.952 60.000 0.00 0.00 0.00 6.13
2037 3258 3.771160 CCTACAACTCCGCCGGCT 61.771 66.667 26.68 6.03 0.00 5.52
2038 3259 2.202756 CTACAACTCCGCCGGCTC 60.203 66.667 26.68 0.00 0.00 4.70
2039 3260 3.718210 CTACAACTCCGCCGGCTCC 62.718 68.421 26.68 0.00 0.00 4.70
2058 3279 3.522731 CGGAGCCGAGTCTGGGAG 61.523 72.222 4.84 0.00 42.83 4.30
2059 3280 3.151022 GGAGCCGAGTCTGGGAGG 61.151 72.222 4.84 0.00 0.00 4.30
2060 3281 3.151022 GAGCCGAGTCTGGGAGGG 61.151 72.222 4.84 0.00 0.00 4.30
2061 3282 4.787280 AGCCGAGTCTGGGAGGGG 62.787 72.222 4.84 0.00 0.00 4.79
2062 3283 4.779733 GCCGAGTCTGGGAGGGGA 62.780 72.222 4.84 0.00 0.00 4.81
2063 3284 2.443016 CCGAGTCTGGGAGGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
2064 3285 2.443016 CGAGTCTGGGAGGGGAGG 60.443 72.222 0.00 0.00 0.00 4.30
2065 3286 2.041405 GAGTCTGGGAGGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
2066 3287 2.540910 AGTCTGGGAGGGGAGGGA 60.541 66.667 0.00 0.00 0.00 4.20
2067 3288 2.365768 GTCTGGGAGGGGAGGGAC 60.366 72.222 0.00 0.00 0.00 4.46
2079 3300 4.115270 AGGGACTCCGAACACTCC 57.885 61.111 0.00 0.00 38.33 3.85
2080 3301 1.609794 AGGGACTCCGAACACTCCC 60.610 63.158 0.00 0.00 42.66 4.30
2081 3302 1.609794 GGGACTCCGAACACTCCCT 60.610 63.158 0.00 0.00 39.59 4.20
2082 3303 1.192803 GGGACTCCGAACACTCCCTT 61.193 60.000 0.00 0.00 39.59 3.95
2083 3304 1.553706 GGACTCCGAACACTCCCTTA 58.446 55.000 0.00 0.00 0.00 2.69
2084 3305 1.897802 GGACTCCGAACACTCCCTTAA 59.102 52.381 0.00 0.00 0.00 1.85
2085 3306 2.094130 GGACTCCGAACACTCCCTTAAG 60.094 54.545 0.00 0.00 0.00 1.85
2086 3307 2.561858 GACTCCGAACACTCCCTTAAGT 59.438 50.000 0.97 0.00 0.00 2.24
2087 3308 2.970640 ACTCCGAACACTCCCTTAAGTT 59.029 45.455 0.97 0.00 0.00 2.66
2088 3309 4.154942 ACTCCGAACACTCCCTTAAGTTA 58.845 43.478 0.97 0.00 0.00 2.24
2089 3310 4.590222 ACTCCGAACACTCCCTTAAGTTAA 59.410 41.667 0.97 0.00 0.00 2.01
2090 3311 5.143376 TCCGAACACTCCCTTAAGTTAAG 57.857 43.478 14.66 14.66 35.56 1.85
2103 3324 6.223351 CTTAAGTTAAGGGGTCTGTCTAGG 57.777 45.833 13.92 0.00 32.17 3.02
2104 3325 4.415224 AAGTTAAGGGGTCTGTCTAGGA 57.585 45.455 0.00 0.00 0.00 2.94
2105 3326 3.710724 AGTTAAGGGGTCTGTCTAGGAC 58.289 50.000 0.00 0.00 0.00 3.85
2106 3327 3.077088 AGTTAAGGGGTCTGTCTAGGACA 59.923 47.826 0.43 0.43 40.50 4.02
2107 3328 1.939980 AAGGGGTCTGTCTAGGACAC 58.060 55.000 0.00 0.00 37.67 3.67
2108 3329 0.784495 AGGGGTCTGTCTAGGACACA 59.216 55.000 2.82 0.00 37.67 3.72
2109 3330 1.362932 AGGGGTCTGTCTAGGACACAT 59.637 52.381 2.82 0.00 37.67 3.21
2110 3331 2.188817 GGGGTCTGTCTAGGACACATT 58.811 52.381 2.82 0.00 37.67 2.71
2111 3332 2.572104 GGGGTCTGTCTAGGACACATTT 59.428 50.000 2.82 0.00 37.67 2.32
2112 3333 3.773119 GGGGTCTGTCTAGGACACATTTA 59.227 47.826 2.82 0.00 37.67 1.40
2113 3334 4.141914 GGGGTCTGTCTAGGACACATTTAG 60.142 50.000 2.82 0.00 37.67 1.85
2114 3335 4.710375 GGGTCTGTCTAGGACACATTTAGA 59.290 45.833 0.00 0.00 37.67 2.10
2115 3336 5.364157 GGGTCTGTCTAGGACACATTTAGAT 59.636 44.000 0.00 0.00 37.67 1.98
2116 3337 6.276847 GGTCTGTCTAGGACACATTTAGATG 58.723 44.000 0.00 0.00 37.67 2.90
2156 3377 6.166984 CATCTAACCTGATGTCCACTATGT 57.833 41.667 0.00 0.00 39.05 2.29
2157 3378 6.586344 CATCTAACCTGATGTCCACTATGTT 58.414 40.000 0.00 0.00 39.05 2.71
2158 3379 6.620877 TCTAACCTGATGTCCACTATGTTT 57.379 37.500 0.00 0.00 0.00 2.83
2159 3380 6.406370 TCTAACCTGATGTCCACTATGTTTG 58.594 40.000 0.00 0.00 0.00 2.93
2160 3381 4.640771 ACCTGATGTCCACTATGTTTGT 57.359 40.909 0.00 0.00 0.00 2.83
2161 3382 4.326826 ACCTGATGTCCACTATGTTTGTG 58.673 43.478 0.00 0.00 35.39 3.33
2208 3429 3.625649 TTTTGTTCCTTTTTGCTGCCT 57.374 38.095 0.00 0.00 0.00 4.75
2209 3430 3.625649 TTTGTTCCTTTTTGCTGCCTT 57.374 38.095 0.00 0.00 0.00 4.35
2210 3431 4.744795 TTTGTTCCTTTTTGCTGCCTTA 57.255 36.364 0.00 0.00 0.00 2.69
2211 3432 4.953940 TTGTTCCTTTTTGCTGCCTTAT 57.046 36.364 0.00 0.00 0.00 1.73
2212 3433 4.953940 TGTTCCTTTTTGCTGCCTTATT 57.046 36.364 0.00 0.00 0.00 1.40
2213 3434 5.289083 TGTTCCTTTTTGCTGCCTTATTT 57.711 34.783 0.00 0.00 0.00 1.40
2214 3435 5.055812 TGTTCCTTTTTGCTGCCTTATTTG 58.944 37.500 0.00 0.00 0.00 2.32
2215 3436 4.953940 TCCTTTTTGCTGCCTTATTTGT 57.046 36.364 0.00 0.00 0.00 2.83
2216 3437 4.630111 TCCTTTTTGCTGCCTTATTTGTG 58.370 39.130 0.00 0.00 0.00 3.33
2217 3438 3.747529 CCTTTTTGCTGCCTTATTTGTGG 59.252 43.478 0.00 0.00 0.00 4.17
2218 3439 3.399440 TTTTGCTGCCTTATTTGTGGG 57.601 42.857 0.00 0.00 0.00 4.61
2219 3440 2.300956 TTGCTGCCTTATTTGTGGGA 57.699 45.000 0.00 0.00 0.00 4.37
2220 3441 1.838112 TGCTGCCTTATTTGTGGGAG 58.162 50.000 0.00 0.00 43.41 4.30
2222 3443 2.134789 CTGCCTTATTTGTGGGAGCT 57.865 50.000 0.00 0.00 35.14 4.09
2223 3444 2.450476 CTGCCTTATTTGTGGGAGCTT 58.550 47.619 0.00 0.00 35.14 3.74
2224 3445 3.620488 CTGCCTTATTTGTGGGAGCTTA 58.380 45.455 0.00 0.00 35.14 3.09
2225 3446 3.620488 TGCCTTATTTGTGGGAGCTTAG 58.380 45.455 0.00 0.00 0.00 2.18
2226 3447 3.265737 TGCCTTATTTGTGGGAGCTTAGA 59.734 43.478 0.00 0.00 0.00 2.10
2227 3448 4.079787 TGCCTTATTTGTGGGAGCTTAGAT 60.080 41.667 0.00 0.00 0.00 1.98
2228 3449 4.276926 GCCTTATTTGTGGGAGCTTAGATG 59.723 45.833 0.00 0.00 0.00 2.90
2229 3450 5.440610 CCTTATTTGTGGGAGCTTAGATGT 58.559 41.667 0.00 0.00 0.00 3.06
2230 3451 5.888161 CCTTATTTGTGGGAGCTTAGATGTT 59.112 40.000 0.00 0.00 0.00 2.71
2231 3452 7.054124 CCTTATTTGTGGGAGCTTAGATGTTA 58.946 38.462 0.00 0.00 0.00 2.41
2232 3453 7.012421 CCTTATTTGTGGGAGCTTAGATGTTAC 59.988 40.741 0.00 0.00 0.00 2.50
2233 3454 4.901197 TTGTGGGAGCTTAGATGTTACA 57.099 40.909 0.00 0.00 0.00 2.41
2234 3455 5.435686 TTGTGGGAGCTTAGATGTTACAT 57.564 39.130 0.00 0.00 0.00 2.29
2235 3456 5.023533 TGTGGGAGCTTAGATGTTACATC 57.976 43.478 16.80 16.80 0.00 3.06
2236 3457 4.141711 TGTGGGAGCTTAGATGTTACATCC 60.142 45.833 20.28 6.08 0.00 3.51
2237 3458 4.101741 GTGGGAGCTTAGATGTTACATCCT 59.898 45.833 20.28 10.99 0.00 3.24
2238 3459 4.721776 TGGGAGCTTAGATGTTACATCCTT 59.278 41.667 20.28 6.99 0.00 3.36
2239 3460 5.903010 TGGGAGCTTAGATGTTACATCCTTA 59.097 40.000 20.28 6.03 0.00 2.69
2240 3461 6.042093 TGGGAGCTTAGATGTTACATCCTTAG 59.958 42.308 20.28 15.44 0.00 2.18
2241 3462 6.267928 GGGAGCTTAGATGTTACATCCTTAGA 59.732 42.308 20.28 3.31 0.00 2.10
2242 3463 7.202011 GGGAGCTTAGATGTTACATCCTTAGAA 60.202 40.741 20.28 7.61 0.00 2.10
2243 3464 8.204836 GGAGCTTAGATGTTACATCCTTAGAAA 58.795 37.037 20.28 6.29 0.00 2.52
2244 3465 9.601217 GAGCTTAGATGTTACATCCTTAGAAAA 57.399 33.333 20.28 4.83 0.00 2.29
2245 3466 9.384764 AGCTTAGATGTTACATCCTTAGAAAAC 57.615 33.333 20.28 4.63 0.00 2.43
2246 3467 9.162764 GCTTAGATGTTACATCCTTAGAAAACA 57.837 33.333 20.28 0.00 31.69 2.83
2271 3492 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
2272 3493 9.950496 ATCTAGATGTGAATTAGACAAACTGTT 57.050 29.630 3.89 0.00 0.00 3.16
2276 3497 9.561069 AGATGTGAATTAGACAAACTGTTAAGT 57.439 29.630 0.00 0.00 38.71 2.24
2354 3575 2.877168 CCAGCTGTGCAGGAGATTTATC 59.123 50.000 13.81 0.00 37.40 1.75
2366 3587 8.321353 TGCAGGAGATTTATCGGTATGATTAAT 58.679 33.333 0.00 0.00 38.63 1.40
2372 3593 9.302345 AGATTTATCGGTATGATTAATAGTGCG 57.698 33.333 0.00 0.00 36.67 5.34
2377 3598 7.205737 TCGGTATGATTAATAGTGCGTCTAA 57.794 36.000 0.00 0.00 31.94 2.10
2379 3600 7.806487 TCGGTATGATTAATAGTGCGTCTAAAG 59.194 37.037 0.00 0.00 31.94 1.85
2398 3619 5.665916 AAAGCCTGTTATTGAATTCTGGG 57.334 39.130 7.05 0.29 0.00 4.45
2458 3679 8.690840 GTTTCAGAATTAACAGTGCATTGTTAC 58.309 33.333 28.26 19.18 41.75 2.50
2483 3704 5.308825 GAACTCTGGTTTCAGAATTCCAGA 58.691 41.667 24.32 24.32 45.34 3.86
2515 3736 8.360325 TGATATAGGTTGTTGTAGTAATTGCG 57.640 34.615 0.00 0.00 0.00 4.85
2624 3845 5.392380 CCAAGCAAATTGTAGCAGGAACTAG 60.392 44.000 0.00 0.00 34.75 2.57
2689 3910 9.499585 CTTTGAACAGAATAATGCTAACATGAG 57.500 33.333 0.00 0.00 36.36 2.90
2756 3977 6.739112 AGTATTTTGCTTTTTCAGACCAGAC 58.261 36.000 0.00 0.00 0.00 3.51
2783 4004 5.656213 TTTACTCAAGGGTACAGTAGCTC 57.344 43.478 9.62 0.61 0.00 4.09
2820 4041 1.198759 TGGTAGAGGCCTGGGTTGTC 61.199 60.000 12.00 0.00 0.00 3.18
2852 4073 8.774586 CCATCCATTACTAAAAGTACTGCATAC 58.225 37.037 0.00 0.00 32.11 2.39
2919 4140 4.640201 TGATACCATAAAAGGCTGCAACTC 59.360 41.667 0.50 0.00 0.00 3.01
2939 4178 7.469318 GCAACTCTAGTAGATCTCTTATGTGCA 60.469 40.741 0.00 0.00 0.00 4.57
2940 4179 7.744087 ACTCTAGTAGATCTCTTATGTGCAG 57.256 40.000 0.00 0.00 0.00 4.41
2960 4199 7.092716 GTGCAGTTGTGGATTCTGAATTTTAT 58.907 34.615 4.11 0.00 0.00 1.40
3212 4452 5.477510 ACTTCAAAAGTGACAAACATTGCA 58.522 33.333 0.00 0.00 41.01 4.08
3239 4479 3.890756 TGATGATCAGTGGCTTGTTTGTT 59.109 39.130 0.09 0.00 0.00 2.83
3245 4485 3.059166 CAGTGGCTTGTTTGTTAATGGC 58.941 45.455 0.00 0.00 0.00 4.40
3272 4512 4.535526 TGCTCTGATAACAACTGCAGTA 57.464 40.909 22.01 4.30 0.00 2.74
3335 4575 4.012895 GCGTTGGCCACTGTCACG 62.013 66.667 20.06 20.06 0.00 4.35
3528 4768 1.066573 ACTGGAGGAATCGCTCAAGTG 60.067 52.381 7.64 0.00 33.01 3.16
3533 4773 1.620819 AGGAATCGCTCAAGTGACACT 59.379 47.619 1.07 1.07 37.39 3.55
3616 4864 7.831193 AGAGATGGCAAAATGTAGTGTCTTATT 59.169 33.333 0.00 0.00 0.00 1.40
3856 5104 9.916360 TCTCTTTGTCACAGGATAGTATAGTAA 57.084 33.333 0.00 0.00 0.00 2.24
4029 5284 9.685828 TTTTTACTGTTAATGTTGGCTGAATAC 57.314 29.630 0.00 0.00 0.00 1.89
4090 5345 3.495670 TTTTTGTGTGACGTCTTTGGG 57.504 42.857 17.92 0.00 0.00 4.12
4091 5346 2.404923 TTTGTGTGACGTCTTTGGGA 57.595 45.000 17.92 0.00 0.00 4.37
4092 5347 1.948104 TTGTGTGACGTCTTTGGGAG 58.052 50.000 17.92 0.00 0.00 4.30
4093 5348 0.531974 TGTGTGACGTCTTTGGGAGC 60.532 55.000 17.92 0.00 0.00 4.70
4094 5349 1.300620 TGTGACGTCTTTGGGAGCG 60.301 57.895 17.92 0.00 0.00 5.03
4095 5350 1.300697 GTGACGTCTTTGGGAGCGT 60.301 57.895 17.92 0.00 39.58 5.07
4096 5351 0.878961 GTGACGTCTTTGGGAGCGTT 60.879 55.000 17.92 0.00 37.93 4.84
4097 5352 0.179067 TGACGTCTTTGGGAGCGTTT 60.179 50.000 17.92 0.00 37.93 3.60
4098 5353 0.234884 GACGTCTTTGGGAGCGTTTG 59.765 55.000 8.70 0.00 37.93 2.93
4099 5354 1.164041 ACGTCTTTGGGAGCGTTTGG 61.164 55.000 0.00 0.00 35.58 3.28
4100 5355 1.164041 CGTCTTTGGGAGCGTTTGGT 61.164 55.000 0.00 0.00 0.00 3.67
4101 5356 1.029681 GTCTTTGGGAGCGTTTGGTT 58.970 50.000 0.00 0.00 0.00 3.67
4102 5357 1.001706 GTCTTTGGGAGCGTTTGGTTC 60.002 52.381 0.00 0.00 0.00 3.62
4103 5358 1.133915 TCTTTGGGAGCGTTTGGTTCT 60.134 47.619 0.00 0.00 0.00 3.01
4104 5359 1.266989 CTTTGGGAGCGTTTGGTTCTC 59.733 52.381 0.00 0.00 0.00 2.87
4105 5360 0.882927 TTGGGAGCGTTTGGTTCTCG 60.883 55.000 0.00 0.00 0.00 4.04
4106 5361 1.301479 GGGAGCGTTTGGTTCTCGT 60.301 57.895 0.00 0.00 0.00 4.18
4107 5362 1.566018 GGGAGCGTTTGGTTCTCGTG 61.566 60.000 0.00 0.00 0.00 4.35
4108 5363 1.204312 GAGCGTTTGGTTCTCGTGC 59.796 57.895 0.00 0.00 0.00 5.34
4109 5364 1.222115 GAGCGTTTGGTTCTCGTGCT 61.222 55.000 0.00 0.00 0.00 4.40
4110 5365 0.032952 AGCGTTTGGTTCTCGTGCTA 59.967 50.000 0.00 0.00 0.00 3.49
4111 5366 0.438830 GCGTTTGGTTCTCGTGCTAG 59.561 55.000 0.00 0.00 0.00 3.42
4112 5367 0.438830 CGTTTGGTTCTCGTGCTAGC 59.561 55.000 8.10 8.10 0.00 3.42
4113 5368 0.438830 GTTTGGTTCTCGTGCTAGCG 59.561 55.000 10.77 0.00 0.00 4.26
4114 5369 1.289109 TTTGGTTCTCGTGCTAGCGC 61.289 55.000 18.49 18.49 0.00 5.92
4115 5370 2.154798 TTGGTTCTCGTGCTAGCGCT 62.155 55.000 24.83 17.26 36.97 5.92
4116 5371 1.446272 GGTTCTCGTGCTAGCGCTT 60.446 57.895 24.83 0.00 36.97 4.68
4117 5372 1.687494 GGTTCTCGTGCTAGCGCTTG 61.687 60.000 24.83 16.45 36.97 4.01
4118 5373 2.094659 TTCTCGTGCTAGCGCTTGC 61.095 57.895 32.43 32.43 36.97 4.01
4130 5385 4.149346 GCTTGCTTAGCCTAGCCC 57.851 61.111 14.78 0.00 44.48 5.19
4131 5386 1.224592 GCTTGCTTAGCCTAGCCCA 59.775 57.895 14.78 0.00 44.48 5.36
4132 5387 0.817229 GCTTGCTTAGCCTAGCCCAG 60.817 60.000 14.78 3.21 44.48 4.45
4133 5388 0.817229 CTTGCTTAGCCTAGCCCAGC 60.817 60.000 0.29 1.57 40.49 4.85
4134 5389 1.561769 TTGCTTAGCCTAGCCCAGCA 61.562 55.000 0.29 6.27 40.71 4.41
4135 5390 1.224592 GCTTAGCCTAGCCCAGCAA 59.775 57.895 0.00 0.00 35.14 3.91
4136 5391 0.817229 GCTTAGCCTAGCCCAGCAAG 60.817 60.000 0.00 0.00 35.14 4.01
4137 5392 0.179034 CTTAGCCTAGCCCAGCAAGG 60.179 60.000 0.00 0.00 37.03 3.61
4138 5393 0.620410 TTAGCCTAGCCCAGCAAGGA 60.620 55.000 0.00 0.00 41.22 3.36
4139 5394 0.620410 TAGCCTAGCCCAGCAAGGAA 60.620 55.000 0.00 0.00 41.22 3.36
4140 5395 1.452833 GCCTAGCCCAGCAAGGAAG 60.453 63.158 0.00 0.00 41.22 3.46
4141 5396 1.452833 CCTAGCCCAGCAAGGAAGC 60.453 63.158 0.00 0.00 41.22 3.86
4142 5397 1.817099 CTAGCCCAGCAAGGAAGCG 60.817 63.158 0.00 0.00 41.22 4.68
4143 5398 2.244117 CTAGCCCAGCAAGGAAGCGA 62.244 60.000 0.00 0.00 41.22 4.93
4144 5399 2.521958 TAGCCCAGCAAGGAAGCGAC 62.522 60.000 0.00 0.00 41.22 5.19
4145 5400 3.121030 CCCAGCAAGGAAGCGACG 61.121 66.667 0.00 0.00 41.22 5.12
4146 5401 2.357517 CCAGCAAGGAAGCGACGT 60.358 61.111 0.00 0.00 41.22 4.34
4147 5402 1.080093 CCAGCAAGGAAGCGACGTA 60.080 57.895 0.00 0.00 41.22 3.57
4148 5403 1.352156 CCAGCAAGGAAGCGACGTAC 61.352 60.000 0.00 0.00 41.22 3.67
4149 5404 0.388649 CAGCAAGGAAGCGACGTACT 60.389 55.000 0.00 0.00 40.15 2.73
4150 5405 0.109226 AGCAAGGAAGCGACGTACTC 60.109 55.000 0.00 0.00 40.15 2.59
4151 5406 1.077089 GCAAGGAAGCGACGTACTCC 61.077 60.000 0.00 0.22 0.00 3.85
4152 5407 0.458025 CAAGGAAGCGACGTACTCCC 60.458 60.000 0.00 0.00 0.00 4.30
4153 5408 0.611340 AAGGAAGCGACGTACTCCCT 60.611 55.000 0.00 0.00 0.00 4.20
4154 5409 1.031029 AGGAAGCGACGTACTCCCTC 61.031 60.000 0.00 0.00 0.00 4.30
4155 5410 1.031029 GGAAGCGACGTACTCCCTCT 61.031 60.000 0.00 0.00 0.00 3.69
4156 5411 0.099082 GAAGCGACGTACTCCCTCTG 59.901 60.000 0.00 0.00 0.00 3.35
4157 5412 0.608582 AAGCGACGTACTCCCTCTGT 60.609 55.000 0.00 0.00 0.00 3.41
4158 5413 1.025647 AGCGACGTACTCCCTCTGTC 61.026 60.000 0.00 0.00 0.00 3.51
4159 5414 1.991099 GCGACGTACTCCCTCTGTCC 61.991 65.000 0.00 0.00 0.00 4.02
4160 5415 1.375098 CGACGTACTCCCTCTGTCCC 61.375 65.000 0.00 0.00 0.00 4.46
4161 5416 0.323178 GACGTACTCCCTCTGTCCCA 60.323 60.000 0.00 0.00 0.00 4.37
4162 5417 0.335361 ACGTACTCCCTCTGTCCCAT 59.665 55.000 0.00 0.00 0.00 4.00
4163 5418 1.567649 ACGTACTCCCTCTGTCCCATA 59.432 52.381 0.00 0.00 0.00 2.74
4164 5419 2.024655 ACGTACTCCCTCTGTCCCATAA 60.025 50.000 0.00 0.00 0.00 1.90
4165 5420 3.231818 CGTACTCCCTCTGTCCCATAAT 58.768 50.000 0.00 0.00 0.00 1.28
4166 5421 4.141088 ACGTACTCCCTCTGTCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
4167 5422 5.017490 CGTACTCCCTCTGTCCCATAATAT 58.983 45.833 0.00 0.00 0.00 1.28
4168 5423 6.185511 CGTACTCCCTCTGTCCCATAATATA 58.814 44.000 0.00 0.00 0.00 0.86
4169 5424 6.662234 CGTACTCCCTCTGTCCCATAATATAA 59.338 42.308 0.00 0.00 0.00 0.98
4170 5425 7.148052 CGTACTCCCTCTGTCCCATAATATAAG 60.148 44.444 0.00 0.00 0.00 1.73
4171 5426 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
4172 5427 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
4173 5428 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
4174 5429 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
4175 5430 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
4176 5431 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
4177 5432 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
4178 5433 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
4179 5434 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
4206 5461 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
4207 5462 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
4208 5463 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
4209 5464 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4210 5465 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
4211 5466 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
4212 5467 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
4213 5468 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
4214 5469 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4217 5472 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4218 5473 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4219 5474 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4220 5475 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4221 5476 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4222 5477 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4223 5478 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4224 5479 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4225 5480 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4226 5481 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4227 5482 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4228 5483 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4229 5484 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4230 5485 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4231 5486 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
4232 5487 3.339713 TTATGGGACGGAGGGAGTATT 57.660 47.619 0.00 0.00 0.00 1.89
4233 5488 2.191981 ATGGGACGGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
4234 5489 1.200519 TGGGACGGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
4235 5490 0.468648 GGGACGGAGGGAGTATTTGG 59.531 60.000 0.00 0.00 0.00 3.28
4236 5491 1.201424 GGACGGAGGGAGTATTTGGT 58.799 55.000 0.00 0.00 0.00 3.67
4237 5492 1.558294 GGACGGAGGGAGTATTTGGTT 59.442 52.381 0.00 0.00 0.00 3.67
4238 5493 2.767960 GGACGGAGGGAGTATTTGGTTA 59.232 50.000 0.00 0.00 0.00 2.85
4239 5494 3.431346 GGACGGAGGGAGTATTTGGTTAC 60.431 52.174 0.00 0.00 0.00 2.50
4240 5495 3.447950 ACGGAGGGAGTATTTGGTTACT 58.552 45.455 0.00 0.00 35.13 2.24
4241 5496 3.197116 ACGGAGGGAGTATTTGGTTACTG 59.803 47.826 0.00 0.00 32.59 2.74
4242 5497 3.431766 CGGAGGGAGTATTTGGTTACTGG 60.432 52.174 0.00 0.00 32.59 4.00
4243 5498 3.118000 GGAGGGAGTATTTGGTTACTGGG 60.118 52.174 0.00 0.00 32.59 4.45
4244 5499 2.241430 AGGGAGTATTTGGTTACTGGGC 59.759 50.000 0.00 0.00 32.59 5.36
4245 5500 2.285977 GGAGTATTTGGTTACTGGGCG 58.714 52.381 0.00 0.00 32.59 6.13
4246 5501 2.093341 GGAGTATTTGGTTACTGGGCGA 60.093 50.000 0.00 0.00 32.59 5.54
4247 5502 3.195661 GAGTATTTGGTTACTGGGCGAG 58.804 50.000 0.00 0.00 32.59 5.03
4248 5503 1.669265 GTATTTGGTTACTGGGCGAGC 59.331 52.381 0.00 0.00 0.00 5.03
4249 5504 0.679960 ATTTGGTTACTGGGCGAGCC 60.680 55.000 5.37 5.37 0.00 4.70
4250 5505 1.774894 TTTGGTTACTGGGCGAGCCT 61.775 55.000 14.33 0.00 36.10 4.58
4251 5506 2.125106 GGTTACTGGGCGAGCCTG 60.125 66.667 14.33 9.69 36.10 4.85
4252 5507 2.820037 GTTACTGGGCGAGCCTGC 60.820 66.667 14.33 0.00 36.10 4.85
4260 5515 3.808656 GCGAGCCTGCCTCTTTGC 61.809 66.667 0.00 0.00 38.49 3.68
4261 5516 3.130160 CGAGCCTGCCTCTTTGCC 61.130 66.667 0.00 0.00 38.49 4.52
4262 5517 2.034687 GAGCCTGCCTCTTTGCCA 59.965 61.111 0.00 0.00 37.60 4.92
4263 5518 2.035312 AGCCTGCCTCTTTGCCAG 59.965 61.111 0.00 0.00 0.00 4.85
4264 5519 2.282745 GCCTGCCTCTTTGCCAGT 60.283 61.111 0.00 0.00 0.00 4.00
4265 5520 2.633509 GCCTGCCTCTTTGCCAGTG 61.634 63.158 0.00 0.00 0.00 3.66
4266 5521 1.975407 CCTGCCTCTTTGCCAGTGG 60.975 63.158 4.20 4.20 38.97 4.00
4267 5522 1.228367 CTGCCTCTTTGCCAGTGGT 60.228 57.895 11.74 0.00 38.31 4.16
4268 5523 0.825010 CTGCCTCTTTGCCAGTGGTT 60.825 55.000 11.74 0.00 38.31 3.67
4269 5524 0.396974 TGCCTCTTTGCCAGTGGTTT 60.397 50.000 11.74 0.00 38.31 3.27
4270 5525 0.315251 GCCTCTTTGCCAGTGGTTTC 59.685 55.000 11.74 0.00 38.31 2.78
4271 5526 0.961753 CCTCTTTGCCAGTGGTTTCC 59.038 55.000 11.74 0.00 32.16 3.13
4272 5527 1.691196 CTCTTTGCCAGTGGTTTCCA 58.309 50.000 11.74 0.00 0.00 3.53
4273 5528 1.610522 CTCTTTGCCAGTGGTTTCCAG 59.389 52.381 11.74 0.55 32.34 3.86
4274 5529 0.032540 CTTTGCCAGTGGTTTCCAGC 59.967 55.000 11.74 0.00 32.34 4.85
4275 5530 0.396974 TTTGCCAGTGGTTTCCAGCT 60.397 50.000 11.74 0.00 32.34 4.24
4276 5531 0.396974 TTGCCAGTGGTTTCCAGCTT 60.397 50.000 11.74 0.00 32.34 3.74
4277 5532 0.396974 TGCCAGTGGTTTCCAGCTTT 60.397 50.000 11.74 0.00 32.34 3.51
4278 5533 0.752658 GCCAGTGGTTTCCAGCTTTT 59.247 50.000 11.74 0.00 32.34 2.27
4279 5534 1.138859 GCCAGTGGTTTCCAGCTTTTT 59.861 47.619 11.74 0.00 32.34 1.94
4295 5550 0.306533 TTTTTCGTGTTGGAGCGAGC 59.693 50.000 0.00 0.00 38.40 5.03
4296 5551 1.827315 TTTTCGTGTTGGAGCGAGCG 61.827 55.000 0.00 0.00 38.40 5.03
4297 5552 2.686956 TTTCGTGTTGGAGCGAGCGA 62.687 55.000 0.00 0.00 38.40 4.93
4298 5553 3.175240 CGTGTTGGAGCGAGCGAG 61.175 66.667 0.00 0.00 0.00 5.03
4299 5554 3.482783 GTGTTGGAGCGAGCGAGC 61.483 66.667 0.00 0.00 37.41 5.03
4300 5555 3.989787 TGTTGGAGCGAGCGAGCA 61.990 61.111 9.01 0.00 40.15 4.26
4301 5556 3.184683 GTTGGAGCGAGCGAGCAG 61.185 66.667 9.01 0.00 40.15 4.24
4302 5557 3.373565 TTGGAGCGAGCGAGCAGA 61.374 61.111 9.01 0.00 40.15 4.26
4303 5558 2.714991 TTGGAGCGAGCGAGCAGAT 61.715 57.895 9.01 0.00 40.15 2.90
4304 5559 2.105930 GGAGCGAGCGAGCAGATT 59.894 61.111 9.01 0.00 40.15 2.40
4305 5560 1.520342 GGAGCGAGCGAGCAGATTT 60.520 57.895 9.01 0.00 40.15 2.17
4306 5561 1.635281 GAGCGAGCGAGCAGATTTG 59.365 57.895 9.01 0.00 40.15 2.32
4307 5562 1.760268 GAGCGAGCGAGCAGATTTGG 61.760 60.000 9.01 0.00 40.15 3.28
4308 5563 2.705826 CGAGCGAGCAGATTTGGC 59.294 61.111 0.00 0.00 0.00 4.52
4309 5564 1.812922 CGAGCGAGCAGATTTGGCT 60.813 57.895 0.00 0.00 46.07 4.75
4314 5569 2.673523 AGCAGATTTGGCTCGCCT 59.326 55.556 9.65 0.00 36.81 5.52
4315 5570 1.748122 AGCAGATTTGGCTCGCCTG 60.748 57.895 9.65 0.00 36.81 4.85
4316 5571 2.796651 CAGATTTGGCTCGCCTGC 59.203 61.111 9.65 0.00 36.94 4.85
4317 5572 2.821366 AGATTTGGCTCGCCTGCG 60.821 61.111 9.65 4.92 41.35 5.18
4318 5573 3.127533 GATTTGGCTCGCCTGCGT 61.128 61.111 11.68 0.00 40.74 5.24
4319 5574 3.100862 GATTTGGCTCGCCTGCGTC 62.101 63.158 11.68 4.87 40.74 5.19
4332 5587 4.821589 GCGTCGGCAAGCCTAGCT 62.822 66.667 9.73 0.00 42.56 3.32
4342 5597 1.144936 AGCCTAGCTTTGCCTAGCG 59.855 57.895 0.00 0.00 45.82 4.26
4343 5598 1.144057 GCCTAGCTTTGCCTAGCGA 59.856 57.895 0.00 0.00 45.82 4.93
4344 5599 0.878086 GCCTAGCTTTGCCTAGCGAG 60.878 60.000 9.39 9.39 45.82 5.03
4345 5600 3.280920 CTAGCTTTGCCTAGCGAGG 57.719 57.895 8.78 8.78 45.82 4.63
4353 5608 4.766970 CCTAGCGAGGCAATCTGG 57.233 61.111 0.00 0.00 35.54 3.86
4354 5609 1.826024 CCTAGCGAGGCAATCTGGT 59.174 57.895 0.00 0.00 35.54 4.00
4355 5610 0.531532 CCTAGCGAGGCAATCTGGTG 60.532 60.000 0.00 0.00 35.54 4.17
4356 5611 0.461548 CTAGCGAGGCAATCTGGTGA 59.538 55.000 0.00 0.00 0.00 4.02
4357 5612 0.461548 TAGCGAGGCAATCTGGTGAG 59.538 55.000 0.00 0.00 0.00 3.51
4358 5613 1.817099 GCGAGGCAATCTGGTGAGG 60.817 63.158 0.00 0.00 0.00 3.86
4359 5614 1.153289 CGAGGCAATCTGGTGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
4360 5615 1.617018 CGAGGCAATCTGGTGAGGGA 61.617 60.000 0.00 0.00 0.00 4.20
4361 5616 0.842635 GAGGCAATCTGGTGAGGGAT 59.157 55.000 0.00 0.00 0.00 3.85
4362 5617 0.842635 AGGCAATCTGGTGAGGGATC 59.157 55.000 0.00 0.00 0.00 3.36
4363 5618 0.179006 GGCAATCTGGTGAGGGATCC 60.179 60.000 1.92 1.92 0.00 3.36
4364 5619 0.548031 GCAATCTGGTGAGGGATCCA 59.452 55.000 15.23 0.00 0.00 3.41
4365 5620 1.064463 GCAATCTGGTGAGGGATCCAA 60.064 52.381 15.23 0.00 33.06 3.53
4366 5621 2.621407 GCAATCTGGTGAGGGATCCAAA 60.621 50.000 15.23 0.00 33.06 3.28
4367 5622 3.019564 CAATCTGGTGAGGGATCCAAAC 58.980 50.000 15.23 8.09 33.06 2.93
4368 5623 0.613260 TCTGGTGAGGGATCCAAACG 59.387 55.000 15.23 0.00 33.06 3.60
4369 5624 0.324943 CTGGTGAGGGATCCAAACGT 59.675 55.000 15.23 0.00 33.06 3.99
4370 5625 0.768622 TGGTGAGGGATCCAAACGTT 59.231 50.000 15.23 0.00 0.00 3.99
4371 5626 1.271163 TGGTGAGGGATCCAAACGTTC 60.271 52.381 15.23 1.71 0.00 3.95
4372 5627 1.450025 GTGAGGGATCCAAACGTTCC 58.550 55.000 15.23 0.00 0.00 3.62
4375 5630 3.349879 GGGATCCAAACGTTCCCAA 57.650 52.632 15.23 0.00 46.39 4.12
4402 5657 9.725019 ATTTCTTCTGGTTTTCTTTTTCTGTTT 57.275 25.926 0.00 0.00 0.00 2.83
4470 5725 8.969121 TGCATTTTGTTATGAGATACAACAAG 57.031 30.769 0.00 0.00 41.64 3.16
4624 5885 7.667557 TGGGGTATTTATGAATACTTCTCGAG 58.332 38.462 17.12 5.93 44.54 4.04
4633 5894 2.724977 TACTTCTCGAGGCAACACAG 57.275 50.000 13.56 0.53 41.41 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.057969 ACCATATATCGGTGTGCATGG 57.942 47.619 0.00 0.00 39.07 3.66
19 20 3.807622 GGGACAACACACACCATATATCG 59.192 47.826 0.00 0.00 0.00 2.92
32 33 2.159382 ACAATCATTCGGGGACAACAC 58.841 47.619 0.00 0.00 0.00 3.32
114 119 3.119531 CCGGCTGAACAATAGCATTTTCA 60.120 43.478 0.00 0.00 42.88 2.69
278 1447 0.908910 ACTATGCCAATGGTGACCGA 59.091 50.000 0.00 0.00 0.00 4.69
414 1586 8.659925 TGCAGTGTGAATCAATAAATTTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
424 1597 3.314913 TGTCGTTTGCAGTGTGAATCAAT 59.685 39.130 0.00 0.00 0.00 2.57
436 1609 4.275689 ACTGAAAAGATGATGTCGTTTGCA 59.724 37.500 0.00 0.00 38.40 4.08
733 1923 1.595382 GAGCCATGAATAGCCGCGT 60.595 57.895 4.92 0.00 0.00 6.01
734 1924 0.952497 ATGAGCCATGAATAGCCGCG 60.952 55.000 0.00 0.00 0.00 6.46
747 1937 1.442526 CCTGCGTCATTGGATGAGCC 61.443 60.000 8.70 0.00 40.53 4.70
797 2009 7.117812 CGGGTAATTCGCTACATCAATATTCTT 59.882 37.037 0.00 0.00 0.00 2.52
802 2014 4.281435 TCCGGGTAATTCGCTACATCAATA 59.719 41.667 0.00 0.00 0.00 1.90
809 2021 0.103572 TGCTCCGGGTAATTCGCTAC 59.896 55.000 0.00 0.00 0.00 3.58
815 2027 3.009143 AGTTCTCTTTGCTCCGGGTAATT 59.991 43.478 0.00 0.00 0.00 1.40
837 2049 8.553696 GTTTCTTTATACACGGTCTTTCTTCAA 58.446 33.333 0.00 0.00 0.00 2.69
840 2052 6.925165 TCGTTTCTTTATACACGGTCTTTCTT 59.075 34.615 0.00 0.00 33.39 2.52
987 2199 2.982130 GCCATGTCCGTGAGAGGT 59.018 61.111 0.00 0.00 0.00 3.85
1659 2871 2.412089 CGCTAGGAAGAAAAACACGAGG 59.588 50.000 0.00 0.00 0.00 4.63
1940 3161 1.132977 TGGATATCCGAACAGGGCCTA 60.133 52.381 17.04 0.00 41.52 3.93
1941 3162 0.399949 TGGATATCCGAACAGGGCCT 60.400 55.000 17.04 0.00 41.52 5.19
1942 3163 0.250338 GTGGATATCCGAACAGGGCC 60.250 60.000 17.04 0.00 41.52 5.80
1943 3164 0.250338 GGTGGATATCCGAACAGGGC 60.250 60.000 17.04 0.15 41.52 5.19
1944 3165 1.070758 CTGGTGGATATCCGAACAGGG 59.929 57.143 22.08 7.36 41.52 4.45
1945 3166 2.039418 TCTGGTGGATATCCGAACAGG 58.961 52.381 26.00 14.04 39.43 4.00
1946 3167 4.616143 CGTATCTGGTGGATATCCGAACAG 60.616 50.000 23.09 23.09 38.91 3.16
1947 3168 3.254903 CGTATCTGGTGGATATCCGAACA 59.745 47.826 17.04 13.21 38.91 3.18
1948 3169 3.255149 ACGTATCTGGTGGATATCCGAAC 59.745 47.826 17.04 10.20 38.91 3.95
1949 3170 3.254903 CACGTATCTGGTGGATATCCGAA 59.745 47.826 17.04 4.14 38.91 4.30
1950 3171 2.817844 CACGTATCTGGTGGATATCCGA 59.182 50.000 17.04 8.29 38.91 4.55
1951 3172 3.217599 CACGTATCTGGTGGATATCCG 57.782 52.381 17.04 2.70 38.91 4.18
1959 3180 4.341235 TCCTCTAATTCCACGTATCTGGTG 59.659 45.833 0.00 0.00 32.50 4.17
1960 3181 4.543689 TCCTCTAATTCCACGTATCTGGT 58.456 43.478 0.00 0.00 32.50 4.00
1961 3182 4.585162 ACTCCTCTAATTCCACGTATCTGG 59.415 45.833 0.00 0.00 0.00 3.86
1962 3183 5.776173 ACTCCTCTAATTCCACGTATCTG 57.224 43.478 0.00 0.00 0.00 2.90
1963 3184 5.452077 GCAACTCCTCTAATTCCACGTATCT 60.452 44.000 0.00 0.00 0.00 1.98
1964 3185 4.745620 GCAACTCCTCTAATTCCACGTATC 59.254 45.833 0.00 0.00 0.00 2.24
1965 3186 4.161565 TGCAACTCCTCTAATTCCACGTAT 59.838 41.667 0.00 0.00 0.00 3.06
1966 3187 3.512329 TGCAACTCCTCTAATTCCACGTA 59.488 43.478 0.00 0.00 0.00 3.57
1967 3188 2.301870 TGCAACTCCTCTAATTCCACGT 59.698 45.455 0.00 0.00 0.00 4.49
1968 3189 2.932614 CTGCAACTCCTCTAATTCCACG 59.067 50.000 0.00 0.00 0.00 4.94
1969 3190 4.187694 CTCTGCAACTCCTCTAATTCCAC 58.812 47.826 0.00 0.00 0.00 4.02
1970 3191 3.369892 GCTCTGCAACTCCTCTAATTCCA 60.370 47.826 0.00 0.00 0.00 3.53
1971 3192 3.202097 GCTCTGCAACTCCTCTAATTCC 58.798 50.000 0.00 0.00 0.00 3.01
1972 3193 3.620821 GTGCTCTGCAACTCCTCTAATTC 59.379 47.826 0.00 0.00 41.47 2.17
1973 3194 3.604582 GTGCTCTGCAACTCCTCTAATT 58.395 45.455 0.00 0.00 41.47 1.40
1974 3195 2.093235 GGTGCTCTGCAACTCCTCTAAT 60.093 50.000 0.00 0.00 43.73 1.73
1975 3196 1.276421 GGTGCTCTGCAACTCCTCTAA 59.724 52.381 0.00 0.00 43.73 2.10
1976 3197 0.898320 GGTGCTCTGCAACTCCTCTA 59.102 55.000 0.00 0.00 43.73 2.43
1977 3198 1.676384 GGTGCTCTGCAACTCCTCT 59.324 57.895 0.00 0.00 43.73 3.69
1978 3199 4.292784 GGTGCTCTGCAACTCCTC 57.707 61.111 0.00 0.00 43.73 3.71
1984 3205 3.153369 TGGAAATTAGGTGCTCTGCAA 57.847 42.857 0.00 0.00 41.47 4.08
1985 3206 2.819608 GTTGGAAATTAGGTGCTCTGCA 59.180 45.455 0.00 0.00 35.60 4.41
1986 3207 3.084786 AGTTGGAAATTAGGTGCTCTGC 58.915 45.455 0.00 0.00 0.00 4.26
1987 3208 3.691609 GGAGTTGGAAATTAGGTGCTCTG 59.308 47.826 0.00 0.00 0.00 3.35
1988 3209 3.330701 TGGAGTTGGAAATTAGGTGCTCT 59.669 43.478 0.00 0.00 0.00 4.09
1989 3210 3.686016 TGGAGTTGGAAATTAGGTGCTC 58.314 45.455 0.00 0.00 0.00 4.26
1990 3211 3.074538 ACTGGAGTTGGAAATTAGGTGCT 59.925 43.478 0.00 0.00 0.00 4.40
1991 3212 3.421844 ACTGGAGTTGGAAATTAGGTGC 58.578 45.455 0.00 0.00 0.00 5.01
1992 3213 7.703058 AAATACTGGAGTTGGAAATTAGGTG 57.297 36.000 0.00 0.00 0.00 4.00
1993 3214 9.462606 CTAAAATACTGGAGTTGGAAATTAGGT 57.537 33.333 0.00 0.00 0.00 3.08
1994 3215 8.406297 GCTAAAATACTGGAGTTGGAAATTAGG 58.594 37.037 0.00 0.00 0.00 2.69
1995 3216 8.406297 GGCTAAAATACTGGAGTTGGAAATTAG 58.594 37.037 0.00 0.00 0.00 1.73
1996 3217 8.113462 AGGCTAAAATACTGGAGTTGGAAATTA 58.887 33.333 0.00 0.00 0.00 1.40
1997 3218 6.954102 AGGCTAAAATACTGGAGTTGGAAATT 59.046 34.615 0.00 0.00 0.00 1.82
1998 3219 6.494059 AGGCTAAAATACTGGAGTTGGAAAT 58.506 36.000 0.00 0.00 0.00 2.17
1999 3220 5.887754 AGGCTAAAATACTGGAGTTGGAAA 58.112 37.500 0.00 0.00 0.00 3.13
2000 3221 5.514500 AGGCTAAAATACTGGAGTTGGAA 57.486 39.130 0.00 0.00 0.00 3.53
2001 3222 5.486063 TGTAGGCTAAAATACTGGAGTTGGA 59.514 40.000 0.00 0.00 0.00 3.53
2002 3223 5.741011 TGTAGGCTAAAATACTGGAGTTGG 58.259 41.667 0.00 0.00 0.00 3.77
2003 3224 6.879458 AGTTGTAGGCTAAAATACTGGAGTTG 59.121 38.462 0.00 0.00 0.00 3.16
2004 3225 7.017319 AGTTGTAGGCTAAAATACTGGAGTT 57.983 36.000 0.00 0.00 0.00 3.01
2005 3226 6.351966 GGAGTTGTAGGCTAAAATACTGGAGT 60.352 42.308 0.00 0.00 0.00 3.85
2006 3227 6.049790 GGAGTTGTAGGCTAAAATACTGGAG 58.950 44.000 0.00 0.00 0.00 3.86
2007 3228 5.394883 CGGAGTTGTAGGCTAAAATACTGGA 60.395 44.000 0.00 0.00 0.00 3.86
2008 3229 4.809426 CGGAGTTGTAGGCTAAAATACTGG 59.191 45.833 0.00 0.00 0.00 4.00
2009 3230 4.270325 GCGGAGTTGTAGGCTAAAATACTG 59.730 45.833 0.00 4.70 0.00 2.74
2010 3231 4.439968 GCGGAGTTGTAGGCTAAAATACT 58.560 43.478 0.00 0.00 0.00 2.12
2011 3232 3.558829 GGCGGAGTTGTAGGCTAAAATAC 59.441 47.826 0.00 0.00 0.00 1.89
2012 3233 3.738899 CGGCGGAGTTGTAGGCTAAAATA 60.739 47.826 0.00 0.00 0.00 1.40
2013 3234 2.640184 GGCGGAGTTGTAGGCTAAAAT 58.360 47.619 0.00 0.00 0.00 1.82
2014 3235 1.673626 CGGCGGAGTTGTAGGCTAAAA 60.674 52.381 0.00 0.00 0.00 1.52
2015 3236 0.108520 CGGCGGAGTTGTAGGCTAAA 60.109 55.000 0.00 0.00 0.00 1.85
2016 3237 1.514087 CGGCGGAGTTGTAGGCTAA 59.486 57.895 0.00 0.00 0.00 3.09
2017 3238 2.420568 CCGGCGGAGTTGTAGGCTA 61.421 63.158 24.41 0.00 0.00 3.93
2018 3239 3.771160 CCGGCGGAGTTGTAGGCT 61.771 66.667 24.41 0.00 0.00 4.58
2020 3241 3.718210 GAGCCGGCGGAGTTGTAGG 62.718 68.421 33.44 0.00 0.00 3.18
2021 3242 2.202756 GAGCCGGCGGAGTTGTAG 60.203 66.667 33.44 0.00 0.00 2.74
2022 3243 3.766691 GGAGCCGGCGGAGTTGTA 61.767 66.667 33.44 0.00 0.00 2.41
2041 3262 3.522731 CTCCCAGACTCGGCTCCG 61.523 72.222 1.14 1.14 41.35 4.63
2042 3263 3.151022 CCTCCCAGACTCGGCTCC 61.151 72.222 0.00 0.00 0.00 4.70
2043 3264 3.151022 CCCTCCCAGACTCGGCTC 61.151 72.222 0.00 0.00 0.00 4.70
2044 3265 4.787280 CCCCTCCCAGACTCGGCT 62.787 72.222 0.00 0.00 0.00 5.52
2045 3266 4.779733 TCCCCTCCCAGACTCGGC 62.780 72.222 0.00 0.00 0.00 5.54
2046 3267 2.443016 CTCCCCTCCCAGACTCGG 60.443 72.222 0.00 0.00 0.00 4.63
2047 3268 2.443016 CCTCCCCTCCCAGACTCG 60.443 72.222 0.00 0.00 0.00 4.18
2048 3269 2.041405 CCCTCCCCTCCCAGACTC 60.041 72.222 0.00 0.00 0.00 3.36
2049 3270 2.540910 TCCCTCCCCTCCCAGACT 60.541 66.667 0.00 0.00 0.00 3.24
2050 3271 2.365768 GTCCCTCCCCTCCCAGAC 60.366 72.222 0.00 0.00 0.00 3.51
2051 3272 2.540910 AGTCCCTCCCCTCCCAGA 60.541 66.667 0.00 0.00 0.00 3.86
2052 3273 2.041405 GAGTCCCTCCCCTCCCAG 60.041 72.222 0.00 0.00 0.00 4.45
2053 3274 3.695825 GGAGTCCCTCCCCTCCCA 61.696 72.222 0.00 0.00 44.36 4.37
2060 3281 1.605971 GGAGTGTTCGGAGTCCCTCC 61.606 65.000 13.71 13.71 46.44 4.30
2061 3282 1.891616 GGAGTGTTCGGAGTCCCTC 59.108 63.158 2.80 3.69 30.03 4.30
2062 3283 4.115270 GGAGTGTTCGGAGTCCCT 57.885 61.111 2.80 0.00 30.03 4.20
2063 3284 2.979649 GGGAGTGTTCGGAGTCCC 59.020 66.667 2.80 7.04 46.36 4.46
2064 3285 1.553706 TAAGGGAGTGTTCGGAGTCC 58.446 55.000 0.00 0.00 34.99 3.85
2065 3286 2.561858 ACTTAAGGGAGTGTTCGGAGTC 59.438 50.000 7.53 0.00 0.00 3.36
2066 3287 2.606378 ACTTAAGGGAGTGTTCGGAGT 58.394 47.619 7.53 0.00 0.00 3.85
2067 3288 3.679824 AACTTAAGGGAGTGTTCGGAG 57.320 47.619 7.53 0.00 0.00 4.63
2068 3289 5.143376 CTTAACTTAAGGGAGTGTTCGGA 57.857 43.478 7.53 0.00 32.17 4.55
2079 3300 8.987172 GTCCTAGACAGACCCCTTAACTTAAGG 61.987 48.148 17.76 17.76 42.31 2.69
2080 3301 5.956563 TCCTAGACAGACCCCTTAACTTAAG 59.043 44.000 0.00 0.00 35.56 1.85
2081 3302 5.718607 GTCCTAGACAGACCCCTTAACTTAA 59.281 44.000 0.00 0.00 32.09 1.85
2082 3303 5.222400 TGTCCTAGACAGACCCCTTAACTTA 60.222 44.000 0.00 0.00 37.67 2.24
2083 3304 4.095211 GTCCTAGACAGACCCCTTAACTT 58.905 47.826 0.00 0.00 32.09 2.66
2084 3305 3.077088 TGTCCTAGACAGACCCCTTAACT 59.923 47.826 0.00 0.00 37.67 2.24
2085 3306 3.195182 GTGTCCTAGACAGACCCCTTAAC 59.805 52.174 0.00 0.00 43.57 2.01
2086 3307 3.181415 TGTGTCCTAGACAGACCCCTTAA 60.181 47.826 0.00 0.00 43.57 1.85
2087 3308 2.380932 TGTGTCCTAGACAGACCCCTTA 59.619 50.000 0.00 0.00 43.57 2.69
2088 3309 1.149288 TGTGTCCTAGACAGACCCCTT 59.851 52.381 0.00 0.00 43.57 3.95
2089 3310 0.784495 TGTGTCCTAGACAGACCCCT 59.216 55.000 0.00 0.00 43.57 4.79
2090 3311 1.867363 ATGTGTCCTAGACAGACCCC 58.133 55.000 0.00 0.00 43.57 4.95
2091 3312 3.983044 AAATGTGTCCTAGACAGACCC 57.017 47.619 0.00 0.00 43.57 4.46
2092 3313 5.916661 TCTAAATGTGTCCTAGACAGACC 57.083 43.478 0.00 0.00 43.57 3.85
2093 3314 6.868622 ACATCTAAATGTGTCCTAGACAGAC 58.131 40.000 0.00 0.00 44.51 3.51
2134 3355 6.814954 AACATAGTGGACATCAGGTTAGAT 57.185 37.500 0.00 0.00 0.00 1.98
2135 3356 6.013725 ACAAACATAGTGGACATCAGGTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
2136 3357 6.092670 CACAAACATAGTGGACATCAGGTTAG 59.907 42.308 0.00 0.00 33.43 2.34
2137 3358 5.937540 CACAAACATAGTGGACATCAGGTTA 59.062 40.000 0.00 0.00 33.43 2.85
2138 3359 4.761739 CACAAACATAGTGGACATCAGGTT 59.238 41.667 0.00 0.00 33.43 3.50
2139 3360 4.326826 CACAAACATAGTGGACATCAGGT 58.673 43.478 0.00 0.00 33.43 4.00
2140 3361 4.952262 CACAAACATAGTGGACATCAGG 57.048 45.455 0.00 0.00 33.43 3.86
2187 3408 3.949132 AGGCAGCAAAAAGGAACAAAAA 58.051 36.364 0.00 0.00 0.00 1.94
2188 3409 3.625649 AGGCAGCAAAAAGGAACAAAA 57.374 38.095 0.00 0.00 0.00 2.44
2189 3410 3.625649 AAGGCAGCAAAAAGGAACAAA 57.374 38.095 0.00 0.00 0.00 2.83
2190 3411 4.953940 ATAAGGCAGCAAAAAGGAACAA 57.046 36.364 0.00 0.00 0.00 2.83
2191 3412 4.953940 AATAAGGCAGCAAAAAGGAACA 57.046 36.364 0.00 0.00 0.00 3.18
2192 3413 5.050159 CACAAATAAGGCAGCAAAAAGGAAC 60.050 40.000 0.00 0.00 0.00 3.62
2193 3414 5.055812 CACAAATAAGGCAGCAAAAAGGAA 58.944 37.500 0.00 0.00 0.00 3.36
2194 3415 4.502950 CCACAAATAAGGCAGCAAAAAGGA 60.503 41.667 0.00 0.00 0.00 3.36
2195 3416 3.747529 CCACAAATAAGGCAGCAAAAAGG 59.252 43.478 0.00 0.00 0.00 3.11
2196 3417 3.747529 CCCACAAATAAGGCAGCAAAAAG 59.252 43.478 0.00 0.00 0.00 2.27
2197 3418 3.389329 TCCCACAAATAAGGCAGCAAAAA 59.611 39.130 0.00 0.00 0.00 1.94
2198 3419 2.968574 TCCCACAAATAAGGCAGCAAAA 59.031 40.909 0.00 0.00 0.00 2.44
2199 3420 2.562298 CTCCCACAAATAAGGCAGCAAA 59.438 45.455 0.00 0.00 0.00 3.68
2200 3421 2.170166 CTCCCACAAATAAGGCAGCAA 58.830 47.619 0.00 0.00 0.00 3.91
2201 3422 1.838112 CTCCCACAAATAAGGCAGCA 58.162 50.000 0.00 0.00 0.00 4.41
2202 3423 0.457443 GCTCCCACAAATAAGGCAGC 59.543 55.000 0.00 0.00 0.00 5.25
2203 3424 2.134789 AGCTCCCACAAATAAGGCAG 57.865 50.000 0.00 0.00 0.00 4.85
2204 3425 2.603075 AAGCTCCCACAAATAAGGCA 57.397 45.000 0.00 0.00 0.00 4.75
2205 3426 3.886123 TCTAAGCTCCCACAAATAAGGC 58.114 45.455 0.00 0.00 0.00 4.35
2206 3427 5.440610 ACATCTAAGCTCCCACAAATAAGG 58.559 41.667 0.00 0.00 0.00 2.69
2207 3428 7.552687 TGTAACATCTAAGCTCCCACAAATAAG 59.447 37.037 0.00 0.00 0.00 1.73
2208 3429 7.398829 TGTAACATCTAAGCTCCCACAAATAA 58.601 34.615 0.00 0.00 0.00 1.40
2209 3430 6.953101 TGTAACATCTAAGCTCCCACAAATA 58.047 36.000 0.00 0.00 0.00 1.40
2210 3431 5.815581 TGTAACATCTAAGCTCCCACAAAT 58.184 37.500 0.00 0.00 0.00 2.32
2211 3432 5.235850 TGTAACATCTAAGCTCCCACAAA 57.764 39.130 0.00 0.00 0.00 2.83
2212 3433 4.901197 TGTAACATCTAAGCTCCCACAA 57.099 40.909 0.00 0.00 0.00 3.33
2213 3434 4.141711 GGATGTAACATCTAAGCTCCCACA 60.142 45.833 0.00 0.00 0.00 4.17
2214 3435 4.101741 AGGATGTAACATCTAAGCTCCCAC 59.898 45.833 0.00 0.00 0.00 4.61
2215 3436 4.298626 AGGATGTAACATCTAAGCTCCCA 58.701 43.478 0.00 0.00 0.00 4.37
2216 3437 4.965200 AGGATGTAACATCTAAGCTCCC 57.035 45.455 0.00 0.00 0.00 4.30
2217 3438 7.291411 TCTAAGGATGTAACATCTAAGCTCC 57.709 40.000 0.00 0.00 0.00 4.70
2218 3439 9.601217 TTTTCTAAGGATGTAACATCTAAGCTC 57.399 33.333 0.00 0.00 0.00 4.09
2219 3440 9.384764 GTTTTCTAAGGATGTAACATCTAAGCT 57.615 33.333 0.00 0.00 0.00 3.74
2220 3441 9.162764 TGTTTTCTAAGGATGTAACATCTAAGC 57.837 33.333 0.00 0.00 0.00 3.09
2245 3466 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
2246 3467 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
2250 3471 9.561069 ACTTAACAGTTTGTCTAATTCACATCT 57.439 29.630 0.00 0.00 0.00 2.90
2266 3487 3.004002 GCGCCTGGTTAAACTTAACAGTT 59.996 43.478 12.99 0.00 45.89 3.16
2267 3488 2.551032 GCGCCTGGTTAAACTTAACAGT 59.449 45.455 12.99 0.00 43.64 3.55
2268 3489 2.550606 TGCGCCTGGTTAAACTTAACAG 59.449 45.455 4.18 8.78 43.64 3.16
2269 3490 2.550606 CTGCGCCTGGTTAAACTTAACA 59.449 45.455 4.18 1.25 43.64 2.41
2270 3491 2.667448 GCTGCGCCTGGTTAAACTTAAC 60.667 50.000 4.18 4.11 41.68 2.01
2271 3492 1.538075 GCTGCGCCTGGTTAAACTTAA 59.462 47.619 4.18 0.00 0.00 1.85
2272 3493 1.161843 GCTGCGCCTGGTTAAACTTA 58.838 50.000 4.18 0.00 0.00 2.24
2273 3494 1.524008 GGCTGCGCCTGGTTAAACTT 61.524 55.000 4.18 0.00 46.69 2.66
2274 3495 1.971695 GGCTGCGCCTGGTTAAACT 60.972 57.895 4.18 0.00 46.69 2.66
2275 3496 2.566529 GGCTGCGCCTGGTTAAAC 59.433 61.111 4.18 0.00 46.69 2.01
2292 3513 6.947258 TCAATCTAATGTCATAACGTGCATG 58.053 36.000 3.82 3.82 0.00 4.06
2354 3575 7.410513 GCTTTAGACGCACTATTAATCATACCG 60.411 40.741 0.00 0.00 0.00 4.02
2366 3587 4.730949 ATAACAGGCTTTAGACGCACTA 57.269 40.909 0.00 0.00 0.00 2.74
2372 3593 7.415653 CCCAGAATTCAATAACAGGCTTTAGAC 60.416 40.741 8.44 0.00 0.00 2.59
2377 3598 4.677182 ACCCAGAATTCAATAACAGGCTT 58.323 39.130 8.44 0.00 0.00 4.35
2379 3600 4.462483 TGAACCCAGAATTCAATAACAGGC 59.538 41.667 8.44 0.00 33.16 4.85
2398 3619 8.559536 TCAACTACATCAAAGTCAATTCTGAAC 58.440 33.333 0.00 0.00 31.88 3.18
2494 3715 5.583457 GGTCGCAATTACTACAACAACCTAT 59.417 40.000 0.00 0.00 0.00 2.57
2515 3736 2.227388 CAGCACCTTCAAGACAATGGTC 59.773 50.000 0.00 0.00 44.66 4.02
2624 3845 4.543692 GCATGAATAATCTGGCATGACAC 58.456 43.478 0.00 0.00 40.29 3.67
2689 3910 3.052036 GCCAACAATGTGAACATGTGAC 58.948 45.455 0.00 0.00 36.56 3.67
2756 3977 6.092259 GCTACTGTACCCTTGAGTAAATTGTG 59.908 42.308 0.00 0.00 0.00 3.33
2783 4004 6.112734 TCTACCAAATAGTGCACATAACCAG 58.887 40.000 21.04 6.34 32.13 4.00
2820 4041 8.487028 AGTACTTTTAGTAATGGATGGAAGAGG 58.513 37.037 0.00 0.00 31.62 3.69
2919 4140 7.647318 CACAACTGCACATAAGAGATCTACTAG 59.353 40.741 0.00 0.00 0.00 2.57
2939 4178 9.927081 AGGATATAAAATTCAGAATCCACAACT 57.073 29.630 0.00 0.00 36.22 3.16
2960 4199 8.092687 GGGCATAAGTAGAATCGTAAAAGGATA 58.907 37.037 0.00 0.00 0.00 2.59
2982 4222 7.288810 CAATAGCTGGAAATATAAAAGGGCA 57.711 36.000 0.00 0.00 0.00 5.36
3239 4479 5.073008 TGTTATCAGAGCATAAGGGCCATTA 59.927 40.000 13.04 13.04 0.00 1.90
3245 4485 4.274459 GCAGTTGTTATCAGAGCATAAGGG 59.726 45.833 0.00 0.00 0.00 3.95
3272 4512 1.343782 TGAGTCCCCAGATCAGCAGAT 60.344 52.381 0.00 0.00 37.13 2.90
3335 4575 1.541233 CCTGTCCCGTCTATGATTGCC 60.541 57.143 0.00 0.00 0.00 4.52
3528 4768 1.079503 GCAGTTCCATTCGGAGTGTC 58.920 55.000 0.00 0.00 44.10 3.67
3533 4773 1.271856 TACCTGCAGTTCCATTCGGA 58.728 50.000 13.81 0.00 40.60 4.55
3616 4864 1.890876 AGGCAACATCAGCGTAACAA 58.109 45.000 0.00 0.00 41.41 2.83
3749 4997 7.893124 ATTGAATGCCTTTCTCAACTATGAT 57.107 32.000 0.00 0.00 34.37 2.45
3761 5009 4.223477 AGCACCAACATATTGAATGCCTTT 59.777 37.500 8.72 0.00 43.47 3.11
4013 5268 7.445121 CCAGAGATAGTATTCAGCCAACATTA 58.555 38.462 0.00 0.00 0.00 1.90
4029 5284 3.849911 TCAAAGTGTTCGCCAGAGATAG 58.150 45.455 0.00 0.00 0.00 2.08
4081 5336 1.164041 ACCAAACGCTCCCAAAGACG 61.164 55.000 0.00 0.00 0.00 4.18
4088 5343 1.301479 ACGAGAACCAAACGCTCCC 60.301 57.895 0.00 0.00 0.00 4.30
4089 5344 1.860078 CACGAGAACCAAACGCTCC 59.140 57.895 0.00 0.00 0.00 4.70
4090 5345 1.204312 GCACGAGAACCAAACGCTC 59.796 57.895 0.00 0.00 0.00 5.03
4091 5346 0.032952 TAGCACGAGAACCAAACGCT 59.967 50.000 0.00 0.00 0.00 5.07
4092 5347 0.438830 CTAGCACGAGAACCAAACGC 59.561 55.000 0.00 0.00 0.00 4.84
4093 5348 0.438830 GCTAGCACGAGAACCAAACG 59.561 55.000 10.63 0.00 0.00 3.60
4094 5349 0.438830 CGCTAGCACGAGAACCAAAC 59.561 55.000 16.45 0.00 34.06 2.93
4095 5350 1.289109 GCGCTAGCACGAGAACCAAA 61.289 55.000 16.45 0.00 44.35 3.28
4096 5351 1.736645 GCGCTAGCACGAGAACCAA 60.737 57.895 16.45 0.00 44.35 3.67
4097 5352 2.126071 GCGCTAGCACGAGAACCA 60.126 61.111 16.45 0.00 44.35 3.67
4114 5369 0.817229 GCTGGGCTAGGCTAAGCAAG 60.817 60.000 27.63 13.89 44.64 4.01
4115 5370 1.224592 GCTGGGCTAGGCTAAGCAA 59.775 57.895 27.63 6.10 44.64 3.91
4116 5371 1.561769 TTGCTGGGCTAGGCTAAGCA 61.562 55.000 29.84 29.84 44.64 3.91
4117 5372 0.817229 CTTGCTGGGCTAGGCTAAGC 60.817 60.000 26.60 26.60 41.99 3.09
4118 5373 0.179034 CCTTGCTGGGCTAGGCTAAG 60.179 60.000 16.80 14.58 43.48 2.18
4119 5374 1.915228 CCTTGCTGGGCTAGGCTAA 59.085 57.895 16.80 4.20 43.48 3.09
4120 5375 3.647367 CCTTGCTGGGCTAGGCTA 58.353 61.111 16.80 9.49 43.48 3.93
4124 5379 1.817099 CGCTTCCTTGCTGGGCTAG 60.817 63.158 0.00 0.00 36.20 3.42
4125 5380 2.268920 CGCTTCCTTGCTGGGCTA 59.731 61.111 0.00 0.00 36.20 3.93
4126 5381 3.640407 TCGCTTCCTTGCTGGGCT 61.640 61.111 0.00 0.00 36.20 5.19
4127 5382 3.435186 GTCGCTTCCTTGCTGGGC 61.435 66.667 0.00 0.00 36.20 5.36
4128 5383 2.501223 TACGTCGCTTCCTTGCTGGG 62.501 60.000 0.00 0.00 36.20 4.45
4129 5384 1.080093 TACGTCGCTTCCTTGCTGG 60.080 57.895 0.00 0.00 37.10 4.85
4130 5385 0.388649 AGTACGTCGCTTCCTTGCTG 60.389 55.000 0.00 0.00 0.00 4.41
4131 5386 0.109226 GAGTACGTCGCTTCCTTGCT 60.109 55.000 0.00 0.00 0.00 3.91
4132 5387 1.077089 GGAGTACGTCGCTTCCTTGC 61.077 60.000 0.00 0.00 0.00 4.01
4133 5388 0.458025 GGGAGTACGTCGCTTCCTTG 60.458 60.000 9.47 0.00 35.21 3.61
4134 5389 0.611340 AGGGAGTACGTCGCTTCCTT 60.611 55.000 12.69 1.20 46.07 3.36
4135 5390 1.001145 AGGGAGTACGTCGCTTCCT 60.001 57.895 12.69 12.69 46.07 3.36
4136 5391 3.600843 AGGGAGTACGTCGCTTCC 58.399 61.111 8.85 8.85 46.07 3.46
4140 5395 1.428620 GACAGAGGGAGTACGTCGC 59.571 63.158 0.00 0.00 38.94 5.19
4141 5396 1.375098 GGGACAGAGGGAGTACGTCG 61.375 65.000 0.00 0.00 38.94 5.12
4142 5397 0.323178 TGGGACAGAGGGAGTACGTC 60.323 60.000 0.00 0.00 0.00 4.34
4143 5398 1.772308 TGGGACAGAGGGAGTACGT 59.228 57.895 0.00 0.00 0.00 3.57
4144 5399 4.757773 TGGGACAGAGGGAGTACG 57.242 61.111 0.00 0.00 0.00 3.67
4183 5438 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
4184 5439 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
4185 5440 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
4187 5442 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
4188 5443 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
4191 5446 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4192 5447 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4193 5448 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4194 5449 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4195 5450 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4196 5451 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4197 5452 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4198 5453 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4199 5454 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4200 5455 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4201 5456 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4202 5457 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4203 5458 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4204 5459 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4205 5460 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4206 5461 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4207 5462 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4208 5463 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4209 5464 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4210 5465 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4211 5466 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4212 5467 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4213 5468 2.969950 CAAATACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
4214 5469 1.768870 CAAATACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
4215 5470 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
4216 5471 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
4217 5472 1.201424 ACCAAATACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
4218 5473 3.450096 AGTAACCAAATACTCCCTCCGTC 59.550 47.826 0.00 0.00 30.26 4.79
4219 5474 3.197116 CAGTAACCAAATACTCCCTCCGT 59.803 47.826 0.00 0.00 33.90 4.69
4220 5475 3.431766 CCAGTAACCAAATACTCCCTCCG 60.432 52.174 0.00 0.00 33.90 4.63
4221 5476 3.118000 CCCAGTAACCAAATACTCCCTCC 60.118 52.174 0.00 0.00 33.90 4.30
4222 5477 3.684697 GCCCAGTAACCAAATACTCCCTC 60.685 52.174 0.00 0.00 33.90 4.30
4223 5478 2.241430 GCCCAGTAACCAAATACTCCCT 59.759 50.000 0.00 0.00 33.90 4.20
4224 5479 2.651455 GCCCAGTAACCAAATACTCCC 58.349 52.381 0.00 0.00 33.90 4.30
4225 5480 2.093341 TCGCCCAGTAACCAAATACTCC 60.093 50.000 0.00 0.00 33.90 3.85
4226 5481 3.195661 CTCGCCCAGTAACCAAATACTC 58.804 50.000 0.00 0.00 33.90 2.59
4227 5482 2.679930 GCTCGCCCAGTAACCAAATACT 60.680 50.000 0.00 0.00 36.57 2.12
4228 5483 1.669265 GCTCGCCCAGTAACCAAATAC 59.331 52.381 0.00 0.00 0.00 1.89
4229 5484 1.407712 GGCTCGCCCAGTAACCAAATA 60.408 52.381 0.00 0.00 0.00 1.40
4230 5485 0.679960 GGCTCGCCCAGTAACCAAAT 60.680 55.000 0.00 0.00 0.00 2.32
4231 5486 1.302993 GGCTCGCCCAGTAACCAAA 60.303 57.895 0.00 0.00 0.00 3.28
4232 5487 2.221299 AGGCTCGCCCAGTAACCAA 61.221 57.895 3.92 0.00 36.58 3.67
4233 5488 2.606519 AGGCTCGCCCAGTAACCA 60.607 61.111 3.92 0.00 36.58 3.67
4234 5489 2.125106 CAGGCTCGCCCAGTAACC 60.125 66.667 3.92 0.00 36.58 2.85
4235 5490 2.820037 GCAGGCTCGCCCAGTAAC 60.820 66.667 3.92 0.00 36.58 2.50
4243 5498 3.808656 GCAAAGAGGCAGGCTCGC 61.809 66.667 17.90 11.91 0.00 5.03
4244 5499 3.130160 GGCAAAGAGGCAGGCTCG 61.130 66.667 17.90 5.72 43.51 5.03
4251 5506 0.315251 GAAACCACTGGCAAAGAGGC 59.685 55.000 0.00 0.00 40.14 4.70
4252 5507 0.961753 GGAAACCACTGGCAAAGAGG 59.038 55.000 0.00 1.32 42.10 3.69
4253 5508 1.610522 CTGGAAACCACTGGCAAAGAG 59.389 52.381 0.00 0.00 0.00 2.85
4254 5509 1.691196 CTGGAAACCACTGGCAAAGA 58.309 50.000 0.00 0.00 0.00 2.52
4255 5510 0.032540 GCTGGAAACCACTGGCAAAG 59.967 55.000 0.00 0.00 0.00 2.77
4256 5511 0.396974 AGCTGGAAACCACTGGCAAA 60.397 50.000 0.00 0.00 0.00 3.68
4257 5512 0.396974 AAGCTGGAAACCACTGGCAA 60.397 50.000 0.00 0.00 0.00 4.52
4258 5513 0.396974 AAAGCTGGAAACCACTGGCA 60.397 50.000 0.00 0.00 0.00 4.92
4259 5514 0.752658 AAAAGCTGGAAACCACTGGC 59.247 50.000 0.00 0.00 0.00 4.85
4276 5531 0.306533 GCTCGCTCCAACACGAAAAA 59.693 50.000 0.00 0.00 37.94 1.94
4277 5532 1.827315 CGCTCGCTCCAACACGAAAA 61.827 55.000 0.00 0.00 37.94 2.29
4278 5533 2.307309 CGCTCGCTCCAACACGAAA 61.307 57.895 0.00 0.00 37.94 3.46
4279 5534 2.733218 CGCTCGCTCCAACACGAA 60.733 61.111 0.00 0.00 37.94 3.85
4280 5535 3.610791 CTCGCTCGCTCCAACACGA 62.611 63.158 0.00 0.00 36.73 4.35
4281 5536 3.175240 CTCGCTCGCTCCAACACG 61.175 66.667 0.00 0.00 0.00 4.49
4282 5537 3.482783 GCTCGCTCGCTCCAACAC 61.483 66.667 0.00 0.00 0.00 3.32
4283 5538 3.921767 CTGCTCGCTCGCTCCAACA 62.922 63.158 0.00 0.00 0.00 3.33
4284 5539 2.897641 ATCTGCTCGCTCGCTCCAAC 62.898 60.000 0.00 0.00 0.00 3.77
4285 5540 2.230994 AATCTGCTCGCTCGCTCCAA 62.231 55.000 0.00 0.00 0.00 3.53
4286 5541 2.230994 AAATCTGCTCGCTCGCTCCA 62.231 55.000 0.00 0.00 0.00 3.86
4287 5542 1.520342 AAATCTGCTCGCTCGCTCC 60.520 57.895 0.00 0.00 0.00 4.70
4288 5543 1.635281 CAAATCTGCTCGCTCGCTC 59.365 57.895 0.00 0.00 0.00 5.03
4289 5544 1.812922 CCAAATCTGCTCGCTCGCT 60.813 57.895 0.00 0.00 0.00 4.93
4290 5545 2.705826 CCAAATCTGCTCGCTCGC 59.294 61.111 0.00 0.00 0.00 5.03
4291 5546 1.760268 GAGCCAAATCTGCTCGCTCG 61.760 60.000 0.00 0.00 45.05 5.03
4292 5547 2.013021 GAGCCAAATCTGCTCGCTC 58.987 57.895 0.00 0.00 45.05 5.03
4293 5548 4.215349 GAGCCAAATCTGCTCGCT 57.785 55.556 0.00 0.00 45.05 4.93
4297 5552 1.748122 CAGGCGAGCCAAATCTGCT 60.748 57.895 17.18 0.00 43.03 4.24
4298 5553 2.796651 CAGGCGAGCCAAATCTGC 59.203 61.111 17.18 0.00 38.92 4.26
4299 5554 2.796651 GCAGGCGAGCCAAATCTG 59.203 61.111 17.18 6.42 38.92 2.90
4300 5555 2.821366 CGCAGGCGAGCCAAATCT 60.821 61.111 17.18 0.00 42.83 2.40
4301 5556 3.100862 GACGCAGGCGAGCCAAATC 62.101 63.158 21.62 1.40 42.83 2.17
4302 5557 3.127533 GACGCAGGCGAGCCAAAT 61.128 61.111 21.62 0.00 42.83 2.32
4315 5570 4.821589 AGCTAGGCTTGCCGACGC 62.822 66.667 17.21 9.84 33.89 5.19
4324 5579 1.144936 CGCTAGGCAAAGCTAGGCT 59.855 57.895 17.38 17.38 44.71 4.58
4325 5580 0.878086 CTCGCTAGGCAAAGCTAGGC 60.878 60.000 9.72 4.68 40.49 3.93
4326 5581 0.249657 CCTCGCTAGGCAAAGCTAGG 60.250 60.000 14.99 14.99 45.64 3.02
4327 5582 3.280920 CCTCGCTAGGCAAAGCTAG 57.719 57.895 9.72 8.02 40.49 3.42
4336 5591 0.531532 CACCAGATTGCCTCGCTAGG 60.532 60.000 0.00 0.00 46.76 3.02
4337 5592 0.461548 TCACCAGATTGCCTCGCTAG 59.538 55.000 0.00 0.00 0.00 3.42
4338 5593 0.461548 CTCACCAGATTGCCTCGCTA 59.538 55.000 0.00 0.00 0.00 4.26
4339 5594 1.220206 CTCACCAGATTGCCTCGCT 59.780 57.895 0.00 0.00 0.00 4.93
4340 5595 1.817099 CCTCACCAGATTGCCTCGC 60.817 63.158 0.00 0.00 0.00 5.03
4341 5596 1.153289 CCCTCACCAGATTGCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
4342 5597 0.842635 ATCCCTCACCAGATTGCCTC 59.157 55.000 0.00 0.00 0.00 4.70
4343 5598 0.842635 GATCCCTCACCAGATTGCCT 59.157 55.000 0.00 0.00 0.00 4.75
4344 5599 0.179006 GGATCCCTCACCAGATTGCC 60.179 60.000 0.00 0.00 0.00 4.52
4345 5600 0.548031 TGGATCCCTCACCAGATTGC 59.452 55.000 9.90 0.00 0.00 3.56
4346 5601 3.019564 GTTTGGATCCCTCACCAGATTG 58.980 50.000 9.90 0.00 37.48 2.67
4347 5602 2.356125 CGTTTGGATCCCTCACCAGATT 60.356 50.000 9.90 0.00 37.48 2.40
4348 5603 1.210478 CGTTTGGATCCCTCACCAGAT 59.790 52.381 9.90 0.00 37.48 2.90
4349 5604 0.613260 CGTTTGGATCCCTCACCAGA 59.387 55.000 9.90 0.00 37.48 3.86
4350 5605 0.324943 ACGTTTGGATCCCTCACCAG 59.675 55.000 9.90 0.00 37.48 4.00
4351 5606 0.768622 AACGTTTGGATCCCTCACCA 59.231 50.000 9.90 0.00 0.00 4.17
4352 5607 1.450025 GAACGTTTGGATCCCTCACC 58.550 55.000 9.90 0.00 0.00 4.02
4353 5608 1.450025 GGAACGTTTGGATCCCTCAC 58.550 55.000 9.90 2.02 0.00 3.51
4354 5609 3.948735 GGAACGTTTGGATCCCTCA 57.051 52.632 9.90 0.00 0.00 3.86
4358 5613 3.953712 AATTTGGGAACGTTTGGATCC 57.046 42.857 4.20 4.20 0.00 3.36
4359 5614 5.134202 AGAAATTTGGGAACGTTTGGATC 57.866 39.130 0.46 0.00 0.00 3.36
4360 5615 5.304357 AGAAGAAATTTGGGAACGTTTGGAT 59.696 36.000 0.46 0.00 0.00 3.41
4361 5616 4.647399 AGAAGAAATTTGGGAACGTTTGGA 59.353 37.500 0.46 0.00 0.00 3.53
4362 5617 4.744631 CAGAAGAAATTTGGGAACGTTTGG 59.255 41.667 0.46 0.00 0.00 3.28
4363 5618 4.744631 CCAGAAGAAATTTGGGAACGTTTG 59.255 41.667 0.46 0.00 0.00 2.93
4364 5619 4.404394 ACCAGAAGAAATTTGGGAACGTTT 59.596 37.500 0.46 0.00 36.28 3.60
4365 5620 3.958147 ACCAGAAGAAATTTGGGAACGTT 59.042 39.130 0.00 0.00 36.28 3.99
4366 5621 3.562182 ACCAGAAGAAATTTGGGAACGT 58.438 40.909 0.00 0.00 36.28 3.99
4367 5622 4.584327 AACCAGAAGAAATTTGGGAACG 57.416 40.909 0.00 0.00 36.28 3.95
4368 5623 6.582636 AGAAAACCAGAAGAAATTTGGGAAC 58.417 36.000 0.00 0.00 36.28 3.62
4369 5624 6.806668 AGAAAACCAGAAGAAATTTGGGAA 57.193 33.333 0.00 0.00 36.28 3.97
4370 5625 6.806668 AAGAAAACCAGAAGAAATTTGGGA 57.193 33.333 0.00 0.00 36.28 4.37
4371 5626 7.864108 AAAAGAAAACCAGAAGAAATTTGGG 57.136 32.000 0.00 0.00 36.28 4.12
4372 5627 9.166173 AGAAAAAGAAAACCAGAAGAAATTTGG 57.834 29.630 0.00 0.00 37.98 3.28
4373 5628 9.977762 CAGAAAAAGAAAACCAGAAGAAATTTG 57.022 29.630 0.00 0.00 0.00 2.32
4374 5629 9.725019 ACAGAAAAAGAAAACCAGAAGAAATTT 57.275 25.926 0.00 0.00 0.00 1.82
4375 5630 9.725019 AACAGAAAAAGAAAACCAGAAGAAATT 57.275 25.926 0.00 0.00 0.00 1.82
4434 5689 7.665690 TCATAACAAAATGCATGTGTTTACCT 58.334 30.769 25.63 10.65 36.83 3.08
4621 5882 5.560966 AAAAATATACCTGTGTTGCCTCG 57.439 39.130 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.