Multiple sequence alignment - TraesCS6D01G224200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G224200 chr6D 100.000 4634 0 0 1 4634 316104985 316100352 0.000000e+00 8558
1 TraesCS6D01G224200 chr6B 92.006 1989 122 19 480 2455 508604659 508606623 0.000000e+00 2758
2 TraesCS6D01G224200 chr6B 93.146 1532 56 18 3126 4632 508606931 508608438 0.000000e+00 2202
3 TraesCS6D01G224200 chr6B 76.963 777 149 10 3 751 276748564 276749338 2.580000e-112 416
4 TraesCS6D01G224200 chr6B 93.789 161 10 0 2457 2617 508606659 508606819 4.630000e-60 243
5 TraesCS6D01G224200 chr6B 95.506 89 3 1 3040 3127 508606810 508606898 1.740000e-29 141
6 TraesCS6D01G224200 chr6A 93.925 1679 90 7 786 2458 453911884 453910212 0.000000e+00 2525
7 TraesCS6D01G224200 chr6A 95.642 872 22 8 3040 3908 453909254 453908396 0.000000e+00 1386
8 TraesCS6D01G224200 chr6A 86.792 795 99 3 1 794 453914967 453914178 0.000000e+00 881
9 TraesCS6D01G224200 chr6A 88.062 779 44 25 3890 4632 453908380 453907615 0.000000e+00 878
10 TraesCS6D01G224200 chr6A 94.030 134 8 0 2487 2620 453909375 453909242 2.190000e-48 204
11 TraesCS6D01G224200 chr1A 81.217 756 128 11 4 750 584877478 584876728 8.580000e-167 597
12 TraesCS6D01G224200 chr4B 80.658 760 124 11 4 746 57804902 57805655 6.730000e-158 568
13 TraesCS6D01G224200 chr4B 80.926 540 77 18 201 723 588965433 588965963 2.010000e-108 403
14 TraesCS6D01G224200 chr1D 81.960 704 95 12 6 681 32759605 32758906 6.730000e-158 568
15 TraesCS6D01G224200 chr1D 88.966 435 34 9 2619 3043 58567700 58568130 4.110000e-145 525
16 TraesCS6D01G224200 chr1D 81.684 475 84 3 275 748 420901487 420901015 4.350000e-105 392
17 TraesCS6D01G224200 chr3B 79.893 751 141 9 3 750 128678539 128677796 4.080000e-150 542
18 TraesCS6D01G224200 chr3D 89.202 426 37 9 2621 3044 384530740 384530322 1.480000e-144 523
19 TraesCS6D01G224200 chr5D 88.152 422 43 6 2621 3040 404471065 404470649 3.220000e-136 496
20 TraesCS6D01G224200 chr5D 87.470 423 45 8 2621 3041 409448513 409448097 9.020000e-132 481
21 TraesCS6D01G224200 chr5D 87.143 420 43 8 2621 3038 381406481 381406891 2.530000e-127 466
22 TraesCS6D01G224200 chr5D 85.294 272 38 2 3 273 410266364 410266094 3.530000e-71 279
23 TraesCS6D01G224200 chr2A 87.793 426 43 9 2621 3043 118664853 118665272 1.500000e-134 490
24 TraesCS6D01G224200 chr7B 87.559 426 44 8 2621 3041 158912353 158911932 6.970000e-133 484
25 TraesCS6D01G224200 chr7B 79.070 602 106 12 164 748 741860118 741860716 3.360000e-106 396
26 TraesCS6D01G224200 chr7B 81.723 476 76 7 7 476 202353329 202352859 2.020000e-103 387
27 TraesCS6D01G224200 chr2B 82.292 576 86 14 3 568 631338148 631338717 6.970000e-133 484
28 TraesCS6D01G224200 chr5B 87.383 428 43 9 2614 3039 461582972 461582554 9.020000e-132 481
29 TraesCS6D01G224200 chr5B 86.118 425 48 10 2621 3042 396438350 396438766 9.150000e-122 448
30 TraesCS6D01G224200 chr4A 81.720 558 88 9 3 548 524177152 524177707 1.970000e-123 453
31 TraesCS6D01G224200 chr2D 86.029 408 51 5 274 679 593354222 593354625 2.560000e-117 433
32 TraesCS6D01G224200 chr2D 77.325 785 137 24 3 750 88404242 88403462 4.290000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G224200 chr6D 316100352 316104985 4633 True 8558.0 8558 100.00000 1 4634 1 chr6D.!!$R1 4633
1 TraesCS6D01G224200 chr6B 508604659 508608438 3779 False 1336.0 2758 93.61175 480 4632 4 chr6B.!!$F2 4152
2 TraesCS6D01G224200 chr6B 276748564 276749338 774 False 416.0 416 76.96300 3 751 1 chr6B.!!$F1 748
3 TraesCS6D01G224200 chr6A 453907615 453914967 7352 True 1174.8 2525 91.69020 1 4632 5 chr6A.!!$R1 4631
4 TraesCS6D01G224200 chr1A 584876728 584877478 750 True 597.0 597 81.21700 4 750 1 chr1A.!!$R1 746
5 TraesCS6D01G224200 chr4B 57804902 57805655 753 False 568.0 568 80.65800 4 746 1 chr4B.!!$F1 742
6 TraesCS6D01G224200 chr4B 588965433 588965963 530 False 403.0 403 80.92600 201 723 1 chr4B.!!$F2 522
7 TraesCS6D01G224200 chr1D 32758906 32759605 699 True 568.0 568 81.96000 6 681 1 chr1D.!!$R1 675
8 TraesCS6D01G224200 chr3B 128677796 128678539 743 True 542.0 542 79.89300 3 750 1 chr3B.!!$R1 747
9 TraesCS6D01G224200 chr7B 741860118 741860716 598 False 396.0 396 79.07000 164 748 1 chr7B.!!$F1 584
10 TraesCS6D01G224200 chr2B 631338148 631338717 569 False 484.0 484 82.29200 3 568 1 chr2B.!!$F1 565
11 TraesCS6D01G224200 chr4A 524177152 524177707 555 False 453.0 453 81.72000 3 548 1 chr4A.!!$F1 545
12 TraesCS6D01G224200 chr2D 88403462 88404242 780 True 425.0 425 77.32500 3 750 1 chr2D.!!$R1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.110678 ATGGAGCATGGATCTGGCTG 59.889 55.0 10.29 0.0 38.15 4.85 F
1165 3542 0.035439 CACCCATTTAGTCGCCCACT 60.035 55.0 0.00 0.0 39.41 4.00 F
1357 3734 0.249489 CGGGGTAAGCATCTCTTCCG 60.249 60.0 0.00 0.0 34.69 4.30 F
2646 5856 0.038166 TTTTTGAGGCCGAGCTCCAT 59.962 50.0 8.47 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 4080 0.105709 AAACCCAAGGAACCACCAGG 60.106 55.0 0.00 0.0 42.04 4.45 R
2627 5837 0.038166 ATGGAGCTCGGCCTCAAAAA 59.962 50.0 7.83 0.0 33.47 1.94 R
2776 5986 0.109597 GCACAGCCCTCATTTCAACG 60.110 55.0 0.00 0.0 0.00 4.10 R
3641 6902 0.450583 CTAGTGTGAGAAGCCGCGTA 59.549 55.0 4.92 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 0.851469 AATGGAGCATGGATCTGGCT 59.149 50.000 6.10 6.10 41.35 4.75
93 94 0.110678 ATGGAGCATGGATCTGGCTG 59.889 55.000 10.29 0.00 38.15 4.85
150 151 1.811266 CCATCTGGCGTCCGAACAG 60.811 63.158 5.75 5.75 0.00 3.16
449 510 2.507944 GCATGGGAGATGACGGCT 59.492 61.111 0.00 0.00 0.00 5.52
500 563 2.921834 TGCCCTACTCTACCTTGTCT 57.078 50.000 0.00 0.00 0.00 3.41
510 573 3.849911 TCTACCTTGTCTGCGATCAAAG 58.150 45.455 0.00 0.00 0.00 2.77
609 679 9.724839 GGTTTTACGTTGCATGTAATAATATGT 57.275 29.630 11.49 0.00 30.49 2.29
723 793 1.571919 GACGTTTGAGGGATCGGATG 58.428 55.000 0.00 0.00 0.00 3.51
726 796 1.405526 CGTTTGAGGGATCGGATGTGT 60.406 52.381 0.00 0.00 0.00 3.72
813 3186 1.470098 ACGCCAATTGTCATCAGCTTC 59.530 47.619 4.43 0.00 0.00 3.86
822 3198 3.076621 TGTCATCAGCTTCACAATGGAC 58.923 45.455 0.00 0.00 0.00 4.02
1065 3442 2.172505 TCCCCACGCACTATTGAATCAT 59.827 45.455 0.00 0.00 0.00 2.45
1141 3518 0.758734 CTTATCCACCTCCCATCGCA 59.241 55.000 0.00 0.00 0.00 5.10
1145 3522 2.187946 CACCTCCCATCGCAGGAC 59.812 66.667 0.00 0.00 33.52 3.85
1165 3542 0.035439 CACCCATTTAGTCGCCCACT 60.035 55.000 0.00 0.00 39.41 4.00
1351 3728 2.564947 GAGATCATCGGGGTAAGCATCT 59.435 50.000 0.00 0.00 0.00 2.90
1357 3734 0.249489 CGGGGTAAGCATCTCTTCCG 60.249 60.000 0.00 0.00 34.69 4.30
1380 3757 2.270352 ACATTGCCTCTTCGGTTTGA 57.730 45.000 0.00 0.00 34.25 2.69
1409 3786 0.846693 AGCCTCCAGTCAAGTTTGGT 59.153 50.000 0.00 0.00 35.89 3.67
1414 3791 3.699038 CCTCCAGTCAAGTTTGGTGAAAA 59.301 43.478 0.00 0.00 35.89 2.29
1428 3805 1.272212 GTGAAAATGTTGGCGGTGGAT 59.728 47.619 0.00 0.00 0.00 3.41
1542 3923 3.045601 TCTGTTGAGTTGCTAGAAGCC 57.954 47.619 0.00 0.00 41.51 4.35
1613 3994 7.272731 GTGAATTTAGCAACGAAAAGGATAACC 59.727 37.037 0.00 0.00 0.00 2.85
1615 3996 2.081462 AGCAACGAAAAGGATAACCGG 58.919 47.619 0.00 0.00 41.83 5.28
1642 4023 2.297597 CTCGCTTAGGGTTCAGATAGGG 59.702 54.545 0.00 0.00 0.00 3.53
1651 4032 6.500490 AGGGTTCAGATAGGGGAAGATATA 57.500 41.667 0.00 0.00 0.00 0.86
1699 4080 0.815213 TTAGCATGCGTGGATGGAGC 60.815 55.000 13.01 0.00 0.00 4.70
1751 4132 7.228706 ACTTTTACTTGTTACATCCAAGACCAG 59.771 37.037 7.11 1.22 41.44 4.00
1768 4149 1.001378 CCAGTTTGGTCTTTTGGAGCG 60.001 52.381 0.00 0.00 44.62 5.03
1769 4150 0.668535 AGTTTGGTCTTTTGGAGCGC 59.331 50.000 0.00 0.00 44.62 5.92
1770 4151 0.660300 GTTTGGTCTTTTGGAGCGCG 60.660 55.000 0.00 0.00 44.62 6.86
1771 4152 2.400896 TTTGGTCTTTTGGAGCGCGC 62.401 55.000 26.66 26.66 44.62 6.86
1932 4313 6.712095 AGATTGTTTGCTACTCTTGAATGTGA 59.288 34.615 0.00 0.00 0.00 3.58
1937 4318 7.648908 TGTTTGCTACTCTTGAATGTGATTTTG 59.351 33.333 0.00 0.00 0.00 2.44
1944 4325 8.862550 ACTCTTGAATGTGATTTTGTTTTCTC 57.137 30.769 0.00 0.00 0.00 2.87
2169 4551 9.019764 GTTTTTCATTTAATGTGGATACCATCG 57.980 33.333 4.77 0.00 35.28 3.84
2266 4652 7.807907 CGCTTTAACAAGAAATTTGGACTATGT 59.192 33.333 0.00 0.00 30.57 2.29
2352 4738 2.037902 TCGTTGGCCTTCACATACTTGA 59.962 45.455 3.32 0.00 0.00 3.02
2365 4751 8.589701 TTCACATACTTGATCTCAGGTACTTA 57.410 34.615 4.52 0.00 40.46 2.24
2414 4802 7.473735 TGGTTGAATGGCTATTTGTATCAAA 57.526 32.000 0.00 0.00 0.00 2.69
2455 4843 6.678900 GCACCCAAGATACTTTTGTCATGATC 60.679 42.308 0.00 0.00 0.00 2.92
2467 4889 4.307443 TGTCATGATCTGCGTAGGTTAG 57.693 45.455 0.00 0.00 0.00 2.34
2511 5721 6.215121 TGTTTGAAAGGTGTGAAGCATTATG 58.785 36.000 0.00 0.00 0.00 1.90
2536 5746 5.163754 GCTCAAAATGCATTACTTACGTCCT 60.164 40.000 13.39 0.00 0.00 3.85
2567 5777 6.280643 AGAGGCAAATTTACAAAACCAGTTC 58.719 36.000 0.00 0.00 0.00 3.01
2606 5816 7.673504 TGGAATTTTCTATGAAGGATTGGACAA 59.326 33.333 0.00 0.00 0.00 3.18
2610 5820 9.927081 ATTTTCTATGAAGGATTGGACAACTAT 57.073 29.630 0.00 0.00 0.00 2.12
2611 5821 8.964476 TTTCTATGAAGGATTGGACAACTATC 57.036 34.615 0.00 0.00 0.00 2.08
2612 5822 7.675161 TCTATGAAGGATTGGACAACTATCA 57.325 36.000 0.00 0.00 0.00 2.15
2613 5823 8.089625 TCTATGAAGGATTGGACAACTATCAA 57.910 34.615 0.00 0.00 0.00 2.57
2614 5824 8.206867 TCTATGAAGGATTGGACAACTATCAAG 58.793 37.037 0.00 0.00 0.00 3.02
2615 5825 6.126863 TGAAGGATTGGACAACTATCAAGT 57.873 37.500 0.00 0.00 37.65 3.16
2616 5826 7.252612 TGAAGGATTGGACAACTATCAAGTA 57.747 36.000 0.00 0.00 33.75 2.24
2617 5827 7.861629 TGAAGGATTGGACAACTATCAAGTAT 58.138 34.615 0.00 0.00 33.75 2.12
2618 5828 7.770433 TGAAGGATTGGACAACTATCAAGTATG 59.230 37.037 0.00 0.00 33.75 2.39
2619 5829 7.437713 AGGATTGGACAACTATCAAGTATGA 57.562 36.000 0.00 0.00 40.57 2.15
2620 5830 7.861629 AGGATTGGACAACTATCAAGTATGAA 58.138 34.615 0.00 0.00 39.49 2.57
2621 5831 8.328758 AGGATTGGACAACTATCAAGTATGAAA 58.671 33.333 0.00 0.00 39.49 2.69
2622 5832 8.956426 GGATTGGACAACTATCAAGTATGAAAA 58.044 33.333 0.00 0.00 39.49 2.29
2626 5836 8.243426 TGGACAACTATCAAGTATGAAAATTGC 58.757 33.333 0.00 0.00 39.49 3.56
2627 5837 8.462016 GGACAACTATCAAGTATGAAAATTGCT 58.538 33.333 0.00 0.00 39.49 3.91
2628 5838 9.846248 GACAACTATCAAGTATGAAAATTGCTT 57.154 29.630 0.00 0.00 39.49 3.91
2635 5845 8.592105 TCAAGTATGAAAATTGCTTTTTGAGG 57.408 30.769 3.19 0.00 37.65 3.86
2636 5846 7.171337 TCAAGTATGAAAATTGCTTTTTGAGGC 59.829 33.333 3.19 0.00 37.65 4.70
2637 5847 5.934043 AGTATGAAAATTGCTTTTTGAGGCC 59.066 36.000 0.00 0.00 37.65 5.19
2638 5848 3.129871 TGAAAATTGCTTTTTGAGGCCG 58.870 40.909 0.00 0.00 37.65 6.13
2639 5849 3.181471 TGAAAATTGCTTTTTGAGGCCGA 60.181 39.130 0.00 0.00 37.65 5.54
2640 5850 2.730550 AATTGCTTTTTGAGGCCGAG 57.269 45.000 0.00 0.00 0.00 4.63
2641 5851 0.244721 ATTGCTTTTTGAGGCCGAGC 59.755 50.000 0.00 2.19 0.00 5.03
2642 5852 0.823356 TTGCTTTTTGAGGCCGAGCT 60.823 50.000 0.00 0.00 34.56 4.09
2643 5853 1.237285 TGCTTTTTGAGGCCGAGCTC 61.237 55.000 2.73 2.73 34.56 4.09
2644 5854 1.927608 GCTTTTTGAGGCCGAGCTCC 61.928 60.000 8.47 0.00 0.00 4.70
2645 5855 0.606401 CTTTTTGAGGCCGAGCTCCA 60.606 55.000 8.47 0.00 0.00 3.86
2646 5856 0.038166 TTTTTGAGGCCGAGCTCCAT 59.962 50.000 8.47 0.00 0.00 3.41
2647 5857 0.677731 TTTTGAGGCCGAGCTCCATG 60.678 55.000 8.47 0.00 0.00 3.66
2648 5858 2.541547 TTTGAGGCCGAGCTCCATGG 62.542 60.000 4.97 4.97 0.00 3.66
2649 5859 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
2650 5860 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
2651 5861 4.247380 GGCCGAGCTCCATGGAGG 62.247 72.222 36.92 25.05 42.19 4.30
2652 5862 4.925861 GCCGAGCTCCATGGAGGC 62.926 72.222 36.92 29.82 42.19 4.70
2653 5863 4.247380 CCGAGCTCCATGGAGGCC 62.247 72.222 36.92 23.97 42.19 5.19
2654 5864 3.160047 CGAGCTCCATGGAGGCCT 61.160 66.667 36.92 27.78 42.19 5.19
2655 5865 2.828145 GAGCTCCATGGAGGCCTC 59.172 66.667 36.92 30.35 42.19 4.70
2668 5878 3.339253 GAGGCCTCCAAATGCAAAATT 57.661 42.857 23.19 0.00 0.00 1.82
2669 5879 3.264947 GAGGCCTCCAAATGCAAAATTC 58.735 45.455 23.19 0.00 0.00 2.17
2670 5880 2.638855 AGGCCTCCAAATGCAAAATTCA 59.361 40.909 0.00 0.00 0.00 2.57
2671 5881 3.072768 AGGCCTCCAAATGCAAAATTCAA 59.927 39.130 0.00 0.00 0.00 2.69
2672 5882 3.819902 GGCCTCCAAATGCAAAATTCAAA 59.180 39.130 0.00 0.00 0.00 2.69
2673 5883 4.277921 GGCCTCCAAATGCAAAATTCAAAA 59.722 37.500 0.00 0.00 0.00 2.44
2674 5884 5.047872 GGCCTCCAAATGCAAAATTCAAAAT 60.048 36.000 0.00 0.00 0.00 1.82
2675 5885 6.448852 GCCTCCAAATGCAAAATTCAAAATT 58.551 32.000 0.00 0.00 0.00 1.82
2676 5886 6.583427 GCCTCCAAATGCAAAATTCAAAATTC 59.417 34.615 0.00 0.00 0.00 2.17
2677 5887 7.649973 CCTCCAAATGCAAAATTCAAAATTCA 58.350 30.769 0.00 0.00 0.00 2.57
2678 5888 8.301002 CCTCCAAATGCAAAATTCAAAATTCAT 58.699 29.630 0.00 0.00 0.00 2.57
2679 5889 9.123709 CTCCAAATGCAAAATTCAAAATTCATG 57.876 29.630 0.00 0.00 0.00 3.07
2680 5890 8.847196 TCCAAATGCAAAATTCAAAATTCATGA 58.153 25.926 0.00 0.00 0.00 3.07
2681 5891 9.464714 CCAAATGCAAAATTCAAAATTCATGAA 57.535 25.926 11.26 11.26 40.76 2.57
2743 5953 9.941325 AAAATACAGAGATAGATGAAGGCATAG 57.059 33.333 0.00 0.00 34.11 2.23
2744 5954 8.663209 AATACAGAGATAGATGAAGGCATAGT 57.337 34.615 0.00 0.00 34.11 2.12
2745 5955 6.343716 ACAGAGATAGATGAAGGCATAGTG 57.656 41.667 0.00 0.00 34.11 2.74
2746 5956 5.170021 CAGAGATAGATGAAGGCATAGTGC 58.830 45.833 0.00 0.00 44.08 4.40
2761 5971 4.024048 GCATAGTGCACAAGTGTGTAACTT 60.024 41.667 21.04 10.32 46.10 2.66
2762 5972 5.505654 GCATAGTGCACAAGTGTGTAACTTT 60.506 40.000 21.04 13.20 44.30 2.66
2763 5973 6.951030 GCATAGTGCACAAGTGTGTAACTTTT 60.951 38.462 21.04 10.54 44.30 2.27
2764 5974 8.664983 GCATAGTGCACAAGTGTGTAACTTTTC 61.665 40.741 21.04 9.09 44.30 2.29
2771 5981 4.395959 AGTGTGTAACTTTTCAGGACGA 57.604 40.909 0.00 0.00 34.57 4.20
2772 5982 4.761975 AGTGTGTAACTTTTCAGGACGAA 58.238 39.130 0.00 0.00 34.57 3.85
2773 5983 5.180271 AGTGTGTAACTTTTCAGGACGAAA 58.820 37.500 0.00 0.00 38.48 3.46
2774 5984 5.820947 AGTGTGTAACTTTTCAGGACGAAAT 59.179 36.000 0.00 0.00 37.95 2.17
2775 5985 6.987992 AGTGTGTAACTTTTCAGGACGAAATA 59.012 34.615 0.00 0.00 37.95 1.40
2776 5986 7.042254 AGTGTGTAACTTTTCAGGACGAAATAC 60.042 37.037 0.00 0.00 37.95 1.89
2777 5987 6.074195 TGTGTAACTTTTCAGGACGAAATACG 60.074 38.462 0.00 0.00 42.89 3.06
2790 6000 3.680789 CGAAATACGTTGAAATGAGGGC 58.319 45.455 0.00 0.00 37.22 5.19
2791 6001 3.374058 CGAAATACGTTGAAATGAGGGCT 59.626 43.478 0.00 0.00 37.22 5.19
2792 6002 4.662145 GAAATACGTTGAAATGAGGGCTG 58.338 43.478 0.00 0.00 0.00 4.85
2793 6003 2.851263 TACGTTGAAATGAGGGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
2794 6004 1.238439 ACGTTGAAATGAGGGCTGTG 58.762 50.000 0.00 0.00 0.00 3.66
2795 6005 0.109597 CGTTGAAATGAGGGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
2796 6006 0.961019 GTTGAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
2797 6007 1.340889 GTTGAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
2798 6008 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
2799 6009 2.037901 TGAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
2800 6010 2.433604 TGAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
2820 6030 5.372343 AAAAAGACAAATCTGGGGCTTTT 57.628 34.783 0.00 0.00 35.69 2.27
2821 6031 5.372343 AAAAGACAAATCTGGGGCTTTTT 57.628 34.783 0.00 0.00 34.48 1.94
2822 6032 6.493189 AAAAGACAAATCTGGGGCTTTTTA 57.507 33.333 0.00 0.00 34.48 1.52
2823 6033 6.493189 AAAGACAAATCTGGGGCTTTTTAA 57.507 33.333 0.00 0.00 34.48 1.52
2824 6034 5.468540 AGACAAATCTGGGGCTTTTTAAC 57.531 39.130 0.00 0.00 32.29 2.01
2825 6035 4.898861 AGACAAATCTGGGGCTTTTTAACA 59.101 37.500 0.00 0.00 32.29 2.41
2826 6036 4.956085 ACAAATCTGGGGCTTTTTAACAC 58.044 39.130 0.00 0.00 0.00 3.32
2827 6037 4.407296 ACAAATCTGGGGCTTTTTAACACA 59.593 37.500 0.00 0.00 0.00 3.72
2828 6038 5.071653 ACAAATCTGGGGCTTTTTAACACAT 59.928 36.000 0.00 0.00 0.00 3.21
2829 6039 4.806640 ATCTGGGGCTTTTTAACACATG 57.193 40.909 0.00 0.00 0.00 3.21
2830 6040 2.896685 TCTGGGGCTTTTTAACACATGG 59.103 45.455 0.00 0.00 0.00 3.66
2831 6041 2.632512 CTGGGGCTTTTTAACACATGGT 59.367 45.455 0.00 0.00 0.00 3.55
2832 6042 3.829601 CTGGGGCTTTTTAACACATGGTA 59.170 43.478 0.00 0.00 0.00 3.25
2833 6043 3.574826 TGGGGCTTTTTAACACATGGTAC 59.425 43.478 0.00 0.00 0.00 3.34
2834 6044 3.830178 GGGGCTTTTTAACACATGGTACT 59.170 43.478 0.00 0.00 0.00 2.73
2835 6045 5.011586 GGGGCTTTTTAACACATGGTACTA 58.988 41.667 0.00 0.00 0.00 1.82
2836 6046 5.655090 GGGGCTTTTTAACACATGGTACTAT 59.345 40.000 0.00 0.00 0.00 2.12
2837 6047 6.153851 GGGGCTTTTTAACACATGGTACTATT 59.846 38.462 0.00 0.00 0.00 1.73
2838 6048 7.255569 GGGCTTTTTAACACATGGTACTATTC 58.744 38.462 0.00 0.00 0.00 1.75
2839 6049 7.094118 GGGCTTTTTAACACATGGTACTATTCA 60.094 37.037 0.00 0.00 0.00 2.57
2840 6050 8.466798 GGCTTTTTAACACATGGTACTATTCAT 58.533 33.333 0.00 0.00 0.00 2.57
2841 6051 9.503427 GCTTTTTAACACATGGTACTATTCATC 57.497 33.333 0.00 0.00 0.00 2.92
2846 6056 9.817809 TTAACACATGGTACTATTCATCTTCTC 57.182 33.333 0.00 0.00 0.00 2.87
2847 6057 7.423844 ACACATGGTACTATTCATCTTCTCA 57.576 36.000 0.00 0.00 0.00 3.27
2848 6058 7.495901 ACACATGGTACTATTCATCTTCTCAG 58.504 38.462 0.00 0.00 0.00 3.35
2849 6059 7.343057 ACACATGGTACTATTCATCTTCTCAGA 59.657 37.037 0.00 0.00 0.00 3.27
2850 6060 8.366401 CACATGGTACTATTCATCTTCTCAGAT 58.634 37.037 0.00 0.00 40.79 2.90
2851 6061 8.584157 ACATGGTACTATTCATCTTCTCAGATC 58.416 37.037 0.00 0.00 37.71 2.75
2852 6062 8.583296 CATGGTACTATTCATCTTCTCAGATCA 58.417 37.037 0.00 0.00 37.71 2.92
2853 6063 8.718158 TGGTACTATTCATCTTCTCAGATCAT 57.282 34.615 0.00 0.00 37.71 2.45
2854 6064 8.583296 TGGTACTATTCATCTTCTCAGATCATG 58.417 37.037 0.00 0.00 37.71 3.07
2855 6065 8.801299 GGTACTATTCATCTTCTCAGATCATGA 58.199 37.037 0.00 0.00 37.71 3.07
2861 6071 8.803397 TTCATCTTCTCAGATCATGAATTTGT 57.197 30.769 0.00 0.00 37.71 2.83
2862 6072 8.434733 TCATCTTCTCAGATCATGAATTTGTC 57.565 34.615 0.00 0.00 37.71 3.18
2863 6073 8.265764 TCATCTTCTCAGATCATGAATTTGTCT 58.734 33.333 0.00 0.00 37.71 3.41
2864 6074 8.894731 CATCTTCTCAGATCATGAATTTGTCTT 58.105 33.333 0.00 0.00 37.71 3.01
2865 6075 8.859236 TCTTCTCAGATCATGAATTTGTCTTT 57.141 30.769 0.00 0.00 37.52 2.52
2866 6076 9.293404 TCTTCTCAGATCATGAATTTGTCTTTT 57.707 29.630 0.00 0.00 37.52 2.27
2867 6077 9.909644 CTTCTCAGATCATGAATTTGTCTTTTT 57.090 29.630 0.00 0.00 37.52 1.94
2885 6095 4.377839 TTTTTGTTCAGGTCGCATTTCA 57.622 36.364 0.00 0.00 0.00 2.69
2886 6096 3.624326 TTTGTTCAGGTCGCATTTCAG 57.376 42.857 0.00 0.00 0.00 3.02
2887 6097 0.874390 TGTTCAGGTCGCATTTCAGC 59.126 50.000 0.00 0.00 0.00 4.26
2898 6108 2.253603 GCATTTCAGCGTGTTTCATCC 58.746 47.619 0.00 0.00 0.00 3.51
2899 6109 2.095059 GCATTTCAGCGTGTTTCATCCT 60.095 45.455 0.00 0.00 0.00 3.24
2900 6110 3.126858 GCATTTCAGCGTGTTTCATCCTA 59.873 43.478 0.00 0.00 0.00 2.94
2901 6111 4.379394 GCATTTCAGCGTGTTTCATCCTAA 60.379 41.667 0.00 0.00 0.00 2.69
2902 6112 5.698832 CATTTCAGCGTGTTTCATCCTAAA 58.301 37.500 0.00 0.00 0.00 1.85
2903 6113 5.759506 TTTCAGCGTGTTTCATCCTAAAA 57.240 34.783 0.00 0.00 0.00 1.52
2904 6114 5.957842 TTCAGCGTGTTTCATCCTAAAAT 57.042 34.783 0.00 0.00 0.00 1.82
2905 6115 5.957842 TCAGCGTGTTTCATCCTAAAATT 57.042 34.783 0.00 0.00 0.00 1.82
2906 6116 6.325919 TCAGCGTGTTTCATCCTAAAATTT 57.674 33.333 0.00 0.00 0.00 1.82
2907 6117 6.744112 TCAGCGTGTTTCATCCTAAAATTTT 58.256 32.000 8.75 8.75 0.00 1.82
2908 6118 7.877003 TCAGCGTGTTTCATCCTAAAATTTTA 58.123 30.769 10.16 10.16 0.00 1.52
2909 6119 7.806014 TCAGCGTGTTTCATCCTAAAATTTTAC 59.194 33.333 6.54 0.00 0.00 2.01
2910 6120 7.593273 CAGCGTGTTTCATCCTAAAATTTTACA 59.407 33.333 6.54 1.09 0.00 2.41
2911 6121 7.593644 AGCGTGTTTCATCCTAAAATTTTACAC 59.406 33.333 14.86 14.86 0.00 2.90
2912 6122 7.380065 GCGTGTTTCATCCTAAAATTTTACACA 59.620 33.333 20.68 6.94 0.00 3.72
2913 6123 8.687301 CGTGTTTCATCCTAAAATTTTACACAC 58.313 33.333 20.68 14.56 0.00 3.82
2914 6124 9.522804 GTGTTTCATCCTAAAATTTTACACACA 57.477 29.630 17.97 8.36 0.00 3.72
2919 6129 8.178964 TCATCCTAAAATTTTACACACATACGC 58.821 33.333 6.54 0.00 0.00 4.42
2920 6130 6.844254 TCCTAAAATTTTACACACATACGCC 58.156 36.000 6.54 0.00 0.00 5.68
2921 6131 6.655848 TCCTAAAATTTTACACACATACGCCT 59.344 34.615 6.54 0.00 0.00 5.52
2922 6132 6.964934 CCTAAAATTTTACACACATACGCCTC 59.035 38.462 6.54 0.00 0.00 4.70
2923 6133 5.950758 AAATTTTACACACATACGCCTCA 57.049 34.783 0.00 0.00 0.00 3.86
2924 6134 4.939509 ATTTTACACACATACGCCTCAC 57.060 40.909 0.00 0.00 0.00 3.51
2925 6135 3.388345 TTTACACACATACGCCTCACA 57.612 42.857 0.00 0.00 0.00 3.58
2926 6136 3.603158 TTACACACATACGCCTCACAT 57.397 42.857 0.00 0.00 0.00 3.21
2927 6137 2.010145 ACACACATACGCCTCACATC 57.990 50.000 0.00 0.00 0.00 3.06
2928 6138 1.290203 CACACATACGCCTCACATCC 58.710 55.000 0.00 0.00 0.00 3.51
2929 6139 1.134699 CACACATACGCCTCACATCCT 60.135 52.381 0.00 0.00 0.00 3.24
2930 6140 1.555075 ACACATACGCCTCACATCCTT 59.445 47.619 0.00 0.00 0.00 3.36
2931 6141 1.935873 CACATACGCCTCACATCCTTG 59.064 52.381 0.00 0.00 0.00 3.61
2932 6142 1.555075 ACATACGCCTCACATCCTTGT 59.445 47.619 0.00 0.00 36.15 3.16
2933 6143 2.027192 ACATACGCCTCACATCCTTGTT 60.027 45.455 0.00 0.00 32.34 2.83
2934 6144 2.851263 TACGCCTCACATCCTTGTTT 57.149 45.000 0.00 0.00 32.34 2.83
2935 6145 2.851263 ACGCCTCACATCCTTGTTTA 57.149 45.000 0.00 0.00 32.34 2.01
2936 6146 2.423577 ACGCCTCACATCCTTGTTTAC 58.576 47.619 0.00 0.00 32.34 2.01
2937 6147 2.038557 ACGCCTCACATCCTTGTTTACT 59.961 45.455 0.00 0.00 32.34 2.24
2938 6148 3.074412 CGCCTCACATCCTTGTTTACTT 58.926 45.455 0.00 0.00 32.34 2.24
2939 6149 3.120199 CGCCTCACATCCTTGTTTACTTG 60.120 47.826 0.00 0.00 32.34 3.16
2940 6150 3.366374 GCCTCACATCCTTGTTTACTTGC 60.366 47.826 0.00 0.00 32.34 4.01
2941 6151 3.820467 CCTCACATCCTTGTTTACTTGCA 59.180 43.478 0.00 0.00 32.34 4.08
2942 6152 4.320494 CCTCACATCCTTGTTTACTTGCAC 60.320 45.833 0.00 0.00 32.34 4.57
2943 6153 4.203226 TCACATCCTTGTTTACTTGCACA 58.797 39.130 0.00 0.00 32.34 4.57
2944 6154 4.642437 TCACATCCTTGTTTACTTGCACAA 59.358 37.500 0.00 0.00 32.34 3.33
2945 6155 5.301551 TCACATCCTTGTTTACTTGCACAAT 59.698 36.000 0.00 0.00 32.34 2.71
2946 6156 5.984926 CACATCCTTGTTTACTTGCACAATT 59.015 36.000 0.00 0.00 32.34 2.32
2947 6157 6.479660 CACATCCTTGTTTACTTGCACAATTT 59.520 34.615 0.00 0.00 32.34 1.82
2948 6158 7.011295 CACATCCTTGTTTACTTGCACAATTTT 59.989 33.333 0.00 0.00 32.34 1.82
2949 6159 7.552330 ACATCCTTGTTTACTTGCACAATTTTT 59.448 29.630 0.00 0.00 32.50 1.94
3013 6223 3.998560 AAAAATCGGCCTCCATGGA 57.001 47.368 15.27 15.27 38.35 3.41
3014 6224 1.767759 AAAAATCGGCCTCCATGGAG 58.232 50.000 31.69 31.69 41.63 3.86
3022 6232 3.136750 CTCCATGGAGGCCGAGAG 58.863 66.667 31.14 6.42 38.51 3.20
3023 6233 3.157252 TCCATGGAGGCCGAGAGC 61.157 66.667 11.44 0.00 42.60 4.09
3032 6242 2.491621 GCCGAGAGCCAAAATGCC 59.508 61.111 0.00 0.00 34.35 4.40
3033 6243 2.342650 GCCGAGAGCCAAAATGCCA 61.343 57.895 0.00 0.00 34.35 4.92
3034 6244 1.669999 GCCGAGAGCCAAAATGCCAT 61.670 55.000 0.00 0.00 34.35 4.40
3035 6245 0.819582 CCGAGAGCCAAAATGCCATT 59.180 50.000 0.00 0.00 0.00 3.16
3036 6246 1.202336 CCGAGAGCCAAAATGCCATTC 60.202 52.381 0.00 0.00 0.00 2.67
3037 6247 1.747355 CGAGAGCCAAAATGCCATTCT 59.253 47.619 0.00 0.00 0.00 2.40
3038 6248 2.223433 CGAGAGCCAAAATGCCATTCTC 60.223 50.000 0.00 0.00 30.72 2.87
3039 6249 2.100418 GAGAGCCAAAATGCCATTCTCC 59.900 50.000 0.00 0.00 28.84 3.71
3040 6250 2.105766 GAGCCAAAATGCCATTCTCCT 58.894 47.619 0.00 0.00 0.00 3.69
3041 6251 3.053395 AGAGCCAAAATGCCATTCTCCTA 60.053 43.478 0.00 0.00 0.00 2.94
3108 6319 4.311606 TCGTACTTAAACAGCTCATTGCA 58.688 39.130 0.00 0.00 45.94 4.08
3129 6374 3.916172 CAGAATTCTGTTTGGCATTGACG 59.084 43.478 24.65 0.00 39.09 4.35
3624 6885 0.765510 AGCTTCCCCGTTTCTCAACT 59.234 50.000 0.00 0.00 0.00 3.16
3641 6902 9.784531 TTTCTCAACTTTCAAGTGAGATTAGAT 57.215 29.630 16.13 0.00 39.99 1.98
3646 6907 5.744345 ACTTTCAAGTGAGATTAGATACGCG 59.256 40.000 3.53 3.53 37.98 6.01
3695 6956 2.108700 CTTGGCAAACGAGTTTTCACG 58.891 47.619 0.00 0.00 39.60 4.35
3753 7014 3.130516 TCTGAACCTCGAGTCGCATAATT 59.869 43.478 12.31 0.00 0.00 1.40
3798 7060 0.034896 ATTTCGTCTTGCGGTGGAGT 59.965 50.000 0.00 0.00 41.72 3.85
3799 7061 0.878523 TTTCGTCTTGCGGTGGAGTG 60.879 55.000 0.00 0.00 41.72 3.51
3800 7062 2.023414 TTCGTCTTGCGGTGGAGTGT 62.023 55.000 0.00 0.00 41.72 3.55
3801 7063 1.174078 TCGTCTTGCGGTGGAGTGTA 61.174 55.000 0.00 0.00 41.72 2.90
3802 7064 1.007336 CGTCTTGCGGTGGAGTGTAC 61.007 60.000 0.00 0.00 36.85 2.90
3804 7066 1.045407 TCTTGCGGTGGAGTGTACTT 58.955 50.000 0.00 0.00 0.00 2.24
3805 7067 1.000506 TCTTGCGGTGGAGTGTACTTC 59.999 52.381 0.00 0.00 0.00 3.01
3871 7133 3.066621 TGATGATGTTTATTGCGCCCTTC 59.933 43.478 4.18 0.00 0.00 3.46
4084 7383 3.904339 TCTCTCCAGCTTAGGAAACTTGT 59.096 43.478 0.00 0.00 43.67 3.16
4142 7443 2.681064 GCATTGCTGCCCCTGGAA 60.681 61.111 0.16 0.00 42.88 3.53
4143 7444 2.285024 GCATTGCTGCCCCTGGAAA 61.285 57.895 0.16 0.00 42.88 3.13
4144 7445 1.895238 CATTGCTGCCCCTGGAAAG 59.105 57.895 0.00 0.00 0.00 2.62
4168 7469 3.562505 GAAACTCACATTGCTTGCTCAG 58.437 45.455 0.00 0.00 0.00 3.35
4186 7487 4.616835 GCTCAGCCCAGAAACACAATAAAG 60.617 45.833 0.00 0.00 0.00 1.85
4200 7501 6.795399 ACACAATAAAGGTTTCACTCAGTTG 58.205 36.000 0.00 0.00 0.00 3.16
4234 7535 1.565759 ACATGGAAGCTTCAGGCCATA 59.434 47.619 27.02 5.30 39.01 2.74
4240 7541 2.478872 AGCTTCAGGCCATACTAGGA 57.521 50.000 5.01 0.00 43.05 2.94
4530 7875 9.075519 CAACAAATACTGCAATTATTCGTTGAT 57.924 29.630 18.45 2.37 32.62 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 1.596752 CAGCAACGGCACACCTACA 60.597 57.895 0.00 0.00 44.61 2.74
93 94 2.966309 GCAGCAACGGCACACCTAC 61.966 63.158 0.00 0.00 44.61 3.18
330 384 2.506217 CGACATCCACCACGACGG 60.506 66.667 0.00 0.00 42.50 4.79
449 510 1.671742 GGCTCACGGGACTCAAGAA 59.328 57.895 0.00 0.00 0.00 2.52
478 540 2.766828 GACAAGGTAGAGTAGGGCATGT 59.233 50.000 0.00 0.00 0.00 3.21
500 563 0.874390 GGAGTGTTGCTTTGATCGCA 59.126 50.000 0.00 0.00 35.22 5.10
510 573 2.970974 GCGCTTCCTGGAGTGTTGC 61.971 63.158 0.00 0.28 0.00 4.17
723 793 2.618053 CATCTAAACCCGGACTCACAC 58.382 52.381 0.73 0.00 0.00 3.82
726 796 1.480954 GAGCATCTAAACCCGGACTCA 59.519 52.381 0.73 0.00 0.00 3.41
813 3186 1.660607 CGATCTGAACCGTCCATTGTG 59.339 52.381 0.00 0.00 0.00 3.33
835 3211 3.002451 CACGTTCTATCCAGAGGTCGTAG 59.998 52.174 0.00 0.00 34.86 3.51
971 3348 2.486966 GCGGGCAAAGATGTCAGC 59.513 61.111 0.00 0.00 44.69 4.26
1092 3469 2.604686 AAGGAGGAGGACAGCGCA 60.605 61.111 11.47 0.00 0.00 6.09
1141 3518 0.252197 GCGACTAAATGGGTGGTCCT 59.748 55.000 0.00 0.00 36.20 3.85
1145 3522 1.029947 GTGGGCGACTAAATGGGTGG 61.030 60.000 0.00 0.00 0.00 4.61
1196 3573 1.228988 TCAGGAGCAGGCTCAGACA 60.229 57.895 21.63 1.06 44.40 3.41
1198 3575 1.685077 CCTCAGGAGCAGGCTCAGA 60.685 63.158 21.63 16.76 44.40 3.27
1200 3577 2.686470 CCCTCAGGAGCAGGCTCA 60.686 66.667 21.63 1.89 44.40 4.26
1272 3649 1.821332 CTCTTCCTCCGCCAATGCC 60.821 63.158 0.00 0.00 0.00 4.40
1380 3757 0.480252 ACTGGAGGCTTGCCTTTCTT 59.520 50.000 15.92 0.00 0.00 2.52
1386 3763 0.538287 AACTTGACTGGAGGCTTGCC 60.538 55.000 2.97 2.97 0.00 4.52
1394 3771 4.709397 ACATTTTCACCAAACTTGACTGGA 59.291 37.500 0.00 0.00 36.49 3.86
1409 3786 1.626686 ATCCACCGCCAACATTTTCA 58.373 45.000 0.00 0.00 0.00 2.69
1414 3791 1.408702 GCATTTATCCACCGCCAACAT 59.591 47.619 0.00 0.00 0.00 2.71
1428 3805 2.279741 CTGCTTCGCTACCTGCATTTA 58.720 47.619 0.00 0.00 43.06 1.40
1451 3828 5.234466 AGAAATGATACCACTCCATAGCC 57.766 43.478 0.00 0.00 0.00 3.93
1454 3831 7.618019 AGCTAAGAAATGATACCACTCCATA 57.382 36.000 0.00 0.00 0.00 2.74
1505 3886 9.573133 ACTCAACAGAAAACTCAAAACTATTTG 57.427 29.630 0.00 0.00 45.92 2.32
1542 3923 2.797792 GCGATGGTGCTCAAGAGACTAG 60.798 54.545 0.32 0.00 0.00 2.57
1613 3994 1.804601 ACCCTAAGCGAGAAAAACCG 58.195 50.000 0.00 0.00 0.00 4.44
1615 3996 4.062991 TCTGAACCCTAAGCGAGAAAAAC 58.937 43.478 0.00 0.00 0.00 2.43
1651 4032 9.362539 CAATCATGAAACTTATTTTAGCAAGCT 57.637 29.630 0.00 0.00 0.00 3.74
1699 4080 0.105709 AAACCCAAGGAACCACCAGG 60.106 55.000 0.00 0.00 42.04 4.45
1751 4132 0.660300 CGCGCTCCAAAAGACCAAAC 60.660 55.000 5.56 0.00 0.00 2.93
1768 4149 1.752501 ATATCACACGTCAAGCGCGC 61.753 55.000 26.66 26.66 46.11 6.86
1769 4150 1.187271 GTATATCACACGTCAAGCGCG 59.813 52.381 0.00 0.00 46.11 6.86
1770 4151 2.460918 AGTATATCACACGTCAAGCGC 58.539 47.619 0.00 0.00 46.11 5.92
1879 4260 3.023832 TCTAAGCTCGATGATGTCACCA 58.976 45.455 0.00 0.00 0.00 4.17
1932 4313 5.645056 ACCCCCAAATGAGAAAACAAAAT 57.355 34.783 0.00 0.00 0.00 1.82
1937 4318 6.353404 TCAATAACCCCCAAATGAGAAAAC 57.647 37.500 0.00 0.00 0.00 2.43
1944 4325 4.289245 AGGACATCAATAACCCCCAAATG 58.711 43.478 0.00 0.00 0.00 2.32
2122 4503 9.868389 AAAAACTCGGTAAATTAAGTAAACTCG 57.132 29.630 0.00 0.00 0.00 4.18
2169 4551 4.395854 TCACTGTCACCATTTGATACATGC 59.604 41.667 0.00 0.00 36.32 4.06
2212 4595 8.698854 ACAAAAGATACACATAAATGTTTTGCG 58.301 29.630 14.08 0.00 44.17 4.85
2266 4652 1.246649 TGCCGGTAGAAAGACGTGTA 58.753 50.000 1.90 0.00 0.00 2.90
2270 4656 2.865343 AGTATGCCGGTAGAAAGACG 57.135 50.000 1.90 0.00 0.00 4.18
2320 4706 0.591659 GGCCAACGACCTCAAAAGTC 59.408 55.000 0.00 0.00 0.00 3.01
2352 4738 9.102453 ACCTTAGAAAACTTAAGTACCTGAGAT 57.898 33.333 8.92 0.00 0.00 2.75
2376 4763 5.478407 CATTCAACCATTTTAAGGTGGACC 58.522 41.667 13.37 0.00 38.80 4.46
2414 4802 5.999205 TGGGTGCTGAATTCATTGTAAAT 57.001 34.783 8.96 0.00 0.00 1.40
2428 4816 3.820467 TGACAAAAGTATCTTGGGTGCTG 59.180 43.478 0.00 0.00 0.00 4.41
2455 4843 5.391629 GGAAATTCCAAACTAACCTACGCAG 60.392 44.000 7.23 0.00 36.28 5.18
2467 4889 7.281999 TCAAACATTCAAAGGGAAATTCCAAAC 59.718 33.333 14.68 0.00 38.64 2.93
2536 5746 6.636562 TTTGTAAATTTGCCTCTTCCGTAA 57.363 33.333 0.00 0.00 0.00 3.18
2567 5777 8.600625 CATAGAAAATTCCAAGTTGCATCAATG 58.399 33.333 0.00 0.00 0.00 2.82
2610 5820 7.171337 GCCTCAAAAAGCAATTTTCATACTTGA 59.829 33.333 0.00 0.00 39.20 3.02
2611 5821 7.293018 GCCTCAAAAAGCAATTTTCATACTTG 58.707 34.615 0.00 0.00 39.20 3.16
2612 5822 6.427853 GGCCTCAAAAAGCAATTTTCATACTT 59.572 34.615 0.00 0.00 39.20 2.24
2613 5823 5.934043 GGCCTCAAAAAGCAATTTTCATACT 59.066 36.000 0.00 0.00 39.20 2.12
2614 5824 5.163963 CGGCCTCAAAAAGCAATTTTCATAC 60.164 40.000 0.00 0.00 39.20 2.39
2615 5825 4.928615 CGGCCTCAAAAAGCAATTTTCATA 59.071 37.500 0.00 0.00 39.20 2.15
2616 5826 3.747529 CGGCCTCAAAAAGCAATTTTCAT 59.252 39.130 0.00 0.00 39.20 2.57
2617 5827 3.129871 CGGCCTCAAAAAGCAATTTTCA 58.870 40.909 0.00 0.00 39.20 2.69
2618 5828 3.389221 TCGGCCTCAAAAAGCAATTTTC 58.611 40.909 0.00 0.00 39.20 2.29
2619 5829 3.392882 CTCGGCCTCAAAAAGCAATTTT 58.607 40.909 0.00 0.00 41.93 1.82
2620 5830 2.867647 GCTCGGCCTCAAAAAGCAATTT 60.868 45.455 0.00 0.00 33.21 1.82
2621 5831 1.337167 GCTCGGCCTCAAAAAGCAATT 60.337 47.619 0.00 0.00 33.21 2.32
2622 5832 0.244721 GCTCGGCCTCAAAAAGCAAT 59.755 50.000 0.00 0.00 33.21 3.56
2623 5833 0.823356 AGCTCGGCCTCAAAAAGCAA 60.823 50.000 0.00 0.00 35.42 3.91
2624 5834 1.228245 AGCTCGGCCTCAAAAAGCA 60.228 52.632 0.00 0.00 35.42 3.91
2625 5835 1.503994 GAGCTCGGCCTCAAAAAGC 59.496 57.895 0.00 0.00 0.00 3.51
2626 5836 0.606401 TGGAGCTCGGCCTCAAAAAG 60.606 55.000 7.83 0.00 33.47 2.27
2627 5837 0.038166 ATGGAGCTCGGCCTCAAAAA 59.962 50.000 7.83 0.00 33.47 1.94
2628 5838 0.677731 CATGGAGCTCGGCCTCAAAA 60.678 55.000 7.83 0.00 33.47 2.44
2629 5839 1.078214 CATGGAGCTCGGCCTCAAA 60.078 57.895 7.83 0.00 33.47 2.69
2630 5840 2.586245 CATGGAGCTCGGCCTCAA 59.414 61.111 7.83 0.00 33.47 3.02
2631 5841 3.473647 CCATGGAGCTCGGCCTCA 61.474 66.667 5.56 0.00 33.47 3.86
2632 5842 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
2633 5843 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
2634 5844 4.247380 CCTCCATGGAGCTCGGCC 62.247 72.222 32.97 0.00 40.69 6.13
2635 5845 4.925861 GCCTCCATGGAGCTCGGC 62.926 72.222 32.97 27.64 40.69 5.54
2636 5846 4.247380 GGCCTCCATGGAGCTCGG 62.247 72.222 32.97 22.55 40.69 4.63
2637 5847 3.160047 AGGCCTCCATGGAGCTCG 61.160 66.667 32.97 21.57 40.69 5.03
2638 5848 2.828145 GAGGCCTCCATGGAGCTC 59.172 66.667 32.97 28.38 40.69 4.09
2648 5858 3.264947 GAATTTTGCATTTGGAGGCCTC 58.735 45.455 25.59 25.59 0.00 4.70
2649 5859 2.638855 TGAATTTTGCATTTGGAGGCCT 59.361 40.909 3.86 3.86 0.00 5.19
2650 5860 3.056588 TGAATTTTGCATTTGGAGGCC 57.943 42.857 0.00 0.00 0.00 5.19
2651 5861 5.435820 TTTTGAATTTTGCATTTGGAGGC 57.564 34.783 0.00 0.00 0.00 4.70
2652 5862 7.649973 TGAATTTTGAATTTTGCATTTGGAGG 58.350 30.769 0.00 0.00 0.00 4.30
2653 5863 9.123709 CATGAATTTTGAATTTTGCATTTGGAG 57.876 29.630 0.00 0.00 0.00 3.86
2654 5864 8.847196 TCATGAATTTTGAATTTTGCATTTGGA 58.153 25.926 0.00 0.00 0.00 3.53
2655 5865 9.464714 TTCATGAATTTTGAATTTTGCATTTGG 57.535 25.926 3.38 0.00 0.00 3.28
2717 5927 9.941325 CTATGCCTTCATCTATCTCTGTATTTT 57.059 33.333 0.00 0.00 34.22 1.82
2718 5928 9.099071 ACTATGCCTTCATCTATCTCTGTATTT 57.901 33.333 0.00 0.00 34.22 1.40
2719 5929 8.530311 CACTATGCCTTCATCTATCTCTGTATT 58.470 37.037 0.00 0.00 34.22 1.89
2720 5930 7.363705 GCACTATGCCTTCATCTATCTCTGTAT 60.364 40.741 0.00 0.00 37.42 2.29
2721 5931 6.071672 GCACTATGCCTTCATCTATCTCTGTA 60.072 42.308 0.00 0.00 37.42 2.74
2722 5932 5.279406 GCACTATGCCTTCATCTATCTCTGT 60.279 44.000 0.00 0.00 37.42 3.41
2723 5933 5.170021 GCACTATGCCTTCATCTATCTCTG 58.830 45.833 0.00 0.00 37.42 3.35
2724 5934 4.837298 TGCACTATGCCTTCATCTATCTCT 59.163 41.667 0.00 0.00 44.23 3.10
2725 5935 4.928615 GTGCACTATGCCTTCATCTATCTC 59.071 45.833 10.32 0.00 44.23 2.75
2726 5936 4.346127 TGTGCACTATGCCTTCATCTATCT 59.654 41.667 19.41 0.00 44.23 1.98
2727 5937 4.635223 TGTGCACTATGCCTTCATCTATC 58.365 43.478 19.41 0.00 44.23 2.08
2728 5938 4.694760 TGTGCACTATGCCTTCATCTAT 57.305 40.909 19.41 0.00 44.23 1.98
2729 5939 4.080919 ACTTGTGCACTATGCCTTCATCTA 60.081 41.667 19.41 0.00 44.23 1.98
2730 5940 3.276857 CTTGTGCACTATGCCTTCATCT 58.723 45.455 19.41 0.00 44.23 2.90
2731 5941 3.012518 ACTTGTGCACTATGCCTTCATC 58.987 45.455 19.41 0.00 44.23 2.92
2732 5942 2.751259 CACTTGTGCACTATGCCTTCAT 59.249 45.455 19.41 0.00 44.23 2.57
2733 5943 2.153645 CACTTGTGCACTATGCCTTCA 58.846 47.619 19.41 0.00 44.23 3.02
2734 5944 2.095567 CACACTTGTGCACTATGCCTTC 60.096 50.000 19.41 0.00 44.23 3.46
2735 5945 1.881973 CACACTTGTGCACTATGCCTT 59.118 47.619 19.41 0.00 44.23 4.35
2736 5946 1.527034 CACACTTGTGCACTATGCCT 58.473 50.000 19.41 0.00 44.23 4.75
2737 5947 8.385033 AAAGTTACACACTTGTGCACTATGCC 62.385 42.308 19.41 0.00 45.77 4.40
2738 5948 5.505654 AAAGTTACACACTTGTGCACTATGC 60.506 40.000 19.41 0.00 45.77 3.14
2739 5949 6.060028 AAAGTTACACACTTGTGCACTATG 57.940 37.500 19.41 15.18 45.77 2.23
2740 5950 6.317642 TGAAAAGTTACACACTTGTGCACTAT 59.682 34.615 19.41 0.00 45.77 2.12
2741 5951 5.644206 TGAAAAGTTACACACTTGTGCACTA 59.356 36.000 19.41 9.94 45.77 2.74
2742 5952 4.457603 TGAAAAGTTACACACTTGTGCACT 59.542 37.500 19.41 8.79 45.77 4.40
2743 5953 4.728534 TGAAAAGTTACACACTTGTGCAC 58.271 39.130 10.75 10.75 45.77 4.57
2744 5954 4.142491 CCTGAAAAGTTACACACTTGTGCA 60.142 41.667 9.33 0.00 45.77 4.57
2745 5955 4.095782 TCCTGAAAAGTTACACACTTGTGC 59.904 41.667 9.33 0.00 45.77 4.57
2746 5956 5.569413 GTCCTGAAAAGTTACACACTTGTG 58.431 41.667 7.84 7.84 45.77 3.33
2747 5957 4.331717 CGTCCTGAAAAGTTACACACTTGT 59.668 41.667 0.00 0.00 45.77 3.16
2748 5958 4.569162 TCGTCCTGAAAAGTTACACACTTG 59.431 41.667 0.00 0.00 45.77 3.16
2750 5960 4.395959 TCGTCCTGAAAAGTTACACACT 57.604 40.909 0.00 0.00 37.30 3.55
2751 5961 5.473796 TTTCGTCCTGAAAAGTTACACAC 57.526 39.130 0.00 0.00 43.46 3.82
2769 5979 3.374058 AGCCCTCATTTCAACGTATTTCG 59.626 43.478 0.00 0.00 46.00 3.46
2770 5980 4.156008 ACAGCCCTCATTTCAACGTATTTC 59.844 41.667 0.00 0.00 0.00 2.17
2771 5981 4.079253 ACAGCCCTCATTTCAACGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
2772 5982 3.440173 CACAGCCCTCATTTCAACGTATT 59.560 43.478 0.00 0.00 0.00 1.89
2773 5983 3.009723 CACAGCCCTCATTTCAACGTAT 58.990 45.455 0.00 0.00 0.00 3.06
2774 5984 2.422597 CACAGCCCTCATTTCAACGTA 58.577 47.619 0.00 0.00 0.00 3.57
2775 5985 1.238439 CACAGCCCTCATTTCAACGT 58.762 50.000 0.00 0.00 0.00 3.99
2776 5986 0.109597 GCACAGCCCTCATTTCAACG 60.110 55.000 0.00 0.00 0.00 4.10
2777 5987 0.961019 TGCACAGCCCTCATTTCAAC 59.039 50.000 0.00 0.00 0.00 3.18
2778 5988 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
2779 5989 1.702182 TTTGCACAGCCCTCATTTCA 58.298 45.000 0.00 0.00 0.00 2.69
2780 5990 2.818130 TTTTGCACAGCCCTCATTTC 57.182 45.000 0.00 0.00 0.00 2.17
2798 6008 5.372343 AAAAGCCCCAGATTTGTCTTTTT 57.628 34.783 0.00 0.00 31.97 1.94
2799 6009 5.372343 AAAAAGCCCCAGATTTGTCTTTT 57.628 34.783 0.00 0.00 35.89 2.27
2800 6010 6.126911 TGTTAAAAAGCCCCAGATTTGTCTTT 60.127 34.615 0.00 0.00 30.45 2.52
2801 6011 5.365314 TGTTAAAAAGCCCCAGATTTGTCTT 59.635 36.000 0.00 0.00 30.45 3.01
2802 6012 4.898861 TGTTAAAAAGCCCCAGATTTGTCT 59.101 37.500 0.00 0.00 30.45 3.41
2803 6013 4.988540 GTGTTAAAAAGCCCCAGATTTGTC 59.011 41.667 0.00 0.00 30.45 3.18
2804 6014 4.407296 TGTGTTAAAAAGCCCCAGATTTGT 59.593 37.500 0.00 0.00 30.45 2.83
2805 6015 4.954875 TGTGTTAAAAAGCCCCAGATTTG 58.045 39.130 0.00 0.00 30.45 2.32
2806 6016 5.512921 CCATGTGTTAAAAAGCCCCAGATTT 60.513 40.000 0.00 0.00 31.52 2.17
2807 6017 4.020307 CCATGTGTTAAAAAGCCCCAGATT 60.020 41.667 0.00 0.00 0.00 2.40
2808 6018 3.515104 CCATGTGTTAAAAAGCCCCAGAT 59.485 43.478 0.00 0.00 0.00 2.90
2809 6019 2.896685 CCATGTGTTAAAAAGCCCCAGA 59.103 45.455 0.00 0.00 0.00 3.86
2810 6020 2.632512 ACCATGTGTTAAAAAGCCCCAG 59.367 45.455 0.00 0.00 0.00 4.45
2811 6021 2.683768 ACCATGTGTTAAAAAGCCCCA 58.316 42.857 0.00 0.00 0.00 4.96
2812 6022 3.830178 AGTACCATGTGTTAAAAAGCCCC 59.170 43.478 0.00 0.00 0.00 5.80
2813 6023 6.769134 ATAGTACCATGTGTTAAAAAGCCC 57.231 37.500 0.00 0.00 0.00 5.19
2814 6024 7.822658 TGAATAGTACCATGTGTTAAAAAGCC 58.177 34.615 0.00 0.00 0.00 4.35
2815 6025 9.503427 GATGAATAGTACCATGTGTTAAAAAGC 57.497 33.333 0.00 0.00 0.00 3.51
2820 6030 9.817809 GAGAAGATGAATAGTACCATGTGTTAA 57.182 33.333 0.00 0.00 0.00 2.01
2821 6031 8.977412 TGAGAAGATGAATAGTACCATGTGTTA 58.023 33.333 0.00 0.00 0.00 2.41
2822 6032 7.851228 TGAGAAGATGAATAGTACCATGTGTT 58.149 34.615 0.00 0.00 0.00 3.32
2823 6033 7.343057 TCTGAGAAGATGAATAGTACCATGTGT 59.657 37.037 0.00 0.00 0.00 3.72
2824 6034 7.720442 TCTGAGAAGATGAATAGTACCATGTG 58.280 38.462 0.00 0.00 0.00 3.21
2825 6035 7.904558 TCTGAGAAGATGAATAGTACCATGT 57.095 36.000 0.00 0.00 0.00 3.21
2826 6036 8.583296 TGATCTGAGAAGATGAATAGTACCATG 58.417 37.037 0.00 0.00 0.00 3.66
2827 6037 8.718158 TGATCTGAGAAGATGAATAGTACCAT 57.282 34.615 0.00 0.00 0.00 3.55
2828 6038 8.583296 CATGATCTGAGAAGATGAATAGTACCA 58.417 37.037 0.00 0.00 0.00 3.25
2829 6039 8.801299 TCATGATCTGAGAAGATGAATAGTACC 58.199 37.037 4.75 0.00 0.00 3.34
2835 6045 9.409918 ACAAATTCATGATCTGAGAAGATGAAT 57.590 29.630 19.00 19.00 42.72 2.57
2836 6046 8.803397 ACAAATTCATGATCTGAGAAGATGAA 57.197 30.769 16.91 16.91 37.42 2.57
2837 6047 8.265764 AGACAAATTCATGATCTGAGAAGATGA 58.734 33.333 0.00 3.41 34.68 2.92
2838 6048 8.439993 AGACAAATTCATGATCTGAGAAGATG 57.560 34.615 0.00 0.00 34.68 2.90
2839 6049 9.463902 AAAGACAAATTCATGATCTGAGAAGAT 57.536 29.630 0.00 0.00 34.68 2.40
2840 6050 8.859236 AAAGACAAATTCATGATCTGAGAAGA 57.141 30.769 0.00 0.00 34.68 2.87
2841 6051 9.909644 AAAAAGACAAATTCATGATCTGAGAAG 57.090 29.630 0.00 0.00 34.68 2.85
2864 6074 4.358851 CTGAAATGCGACCTGAACAAAAA 58.641 39.130 0.00 0.00 0.00 1.94
2865 6075 3.795150 GCTGAAATGCGACCTGAACAAAA 60.795 43.478 0.00 0.00 0.00 2.44
2866 6076 2.287547 GCTGAAATGCGACCTGAACAAA 60.288 45.455 0.00 0.00 0.00 2.83
2867 6077 1.266718 GCTGAAATGCGACCTGAACAA 59.733 47.619 0.00 0.00 0.00 2.83
2868 6078 0.874390 GCTGAAATGCGACCTGAACA 59.126 50.000 0.00 0.00 0.00 3.18
2869 6079 3.683581 GCTGAAATGCGACCTGAAC 57.316 52.632 0.00 0.00 0.00 3.18
2878 6088 2.095059 AGGATGAAACACGCTGAAATGC 60.095 45.455 0.00 0.00 0.00 3.56
2879 6089 3.837213 AGGATGAAACACGCTGAAATG 57.163 42.857 0.00 0.00 0.00 2.32
2880 6090 5.957842 TTTAGGATGAAACACGCTGAAAT 57.042 34.783 0.00 0.00 0.00 2.17
2881 6091 5.759506 TTTTAGGATGAAACACGCTGAAA 57.240 34.783 0.00 0.00 0.00 2.69
2882 6092 5.957842 ATTTTAGGATGAAACACGCTGAA 57.042 34.783 0.00 0.00 0.00 3.02
2883 6093 5.957842 AATTTTAGGATGAAACACGCTGA 57.042 34.783 0.00 0.00 0.00 4.26
2884 6094 7.593273 TGTAAAATTTTAGGATGAAACACGCTG 59.407 33.333 10.92 0.00 0.00 5.18
2885 6095 7.593644 GTGTAAAATTTTAGGATGAAACACGCT 59.406 33.333 10.92 0.00 0.00 5.07
2886 6096 7.380065 TGTGTAAAATTTTAGGATGAAACACGC 59.620 33.333 10.92 5.52 0.00 5.34
2887 6097 8.687301 GTGTGTAAAATTTTAGGATGAAACACG 58.313 33.333 10.92 0.00 0.00 4.49
2888 6098 9.522804 TGTGTGTAAAATTTTAGGATGAAACAC 57.477 29.630 10.92 14.50 0.00 3.32
2893 6103 8.178964 GCGTATGTGTGTAAAATTTTAGGATGA 58.821 33.333 10.92 0.00 0.00 2.92
2894 6104 7.431084 GGCGTATGTGTGTAAAATTTTAGGATG 59.569 37.037 10.92 0.02 0.00 3.51
2895 6105 7.338449 AGGCGTATGTGTGTAAAATTTTAGGAT 59.662 33.333 10.92 2.63 0.00 3.24
2896 6106 6.655848 AGGCGTATGTGTGTAAAATTTTAGGA 59.344 34.615 10.92 0.00 0.00 2.94
2897 6107 6.848451 AGGCGTATGTGTGTAAAATTTTAGG 58.152 36.000 10.92 0.00 0.00 2.69
2898 6108 7.480542 GTGAGGCGTATGTGTGTAAAATTTTAG 59.519 37.037 10.92 0.00 0.00 1.85
2899 6109 7.041303 TGTGAGGCGTATGTGTGTAAAATTTTA 60.041 33.333 6.54 6.54 0.00 1.52
2900 6110 6.146898 GTGAGGCGTATGTGTGTAAAATTTT 58.853 36.000 8.75 8.75 0.00 1.82
2901 6111 5.239744 TGTGAGGCGTATGTGTGTAAAATTT 59.760 36.000 0.00 0.00 0.00 1.82
2902 6112 4.757657 TGTGAGGCGTATGTGTGTAAAATT 59.242 37.500 0.00 0.00 0.00 1.82
2903 6113 4.320023 TGTGAGGCGTATGTGTGTAAAAT 58.680 39.130 0.00 0.00 0.00 1.82
2904 6114 3.729966 TGTGAGGCGTATGTGTGTAAAA 58.270 40.909 0.00 0.00 0.00 1.52
2905 6115 3.388345 TGTGAGGCGTATGTGTGTAAA 57.612 42.857 0.00 0.00 0.00 2.01
2906 6116 3.517602 GATGTGAGGCGTATGTGTGTAA 58.482 45.455 0.00 0.00 0.00 2.41
2907 6117 2.159156 GGATGTGAGGCGTATGTGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
2908 6118 1.405526 GGATGTGAGGCGTATGTGTGT 60.406 52.381 0.00 0.00 0.00 3.72
2909 6119 1.134699 AGGATGTGAGGCGTATGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
2910 6120 1.195115 AGGATGTGAGGCGTATGTGT 58.805 50.000 0.00 0.00 0.00 3.72
2911 6121 1.935873 CAAGGATGTGAGGCGTATGTG 59.064 52.381 0.00 0.00 0.00 3.21
2912 6122 1.555075 ACAAGGATGTGAGGCGTATGT 59.445 47.619 0.00 0.00 38.69 2.29
2913 6123 2.315925 ACAAGGATGTGAGGCGTATG 57.684 50.000 0.00 0.00 38.69 2.39
2914 6124 3.350219 AAACAAGGATGTGAGGCGTAT 57.650 42.857 0.00 0.00 40.46 3.06
2915 6125 2.851263 AAACAAGGATGTGAGGCGTA 57.149 45.000 0.00 0.00 40.46 4.42
2916 6126 2.038557 AGTAAACAAGGATGTGAGGCGT 59.961 45.455 0.00 0.00 40.46 5.68
2917 6127 2.699954 AGTAAACAAGGATGTGAGGCG 58.300 47.619 0.00 0.00 40.46 5.52
2918 6128 3.366374 GCAAGTAAACAAGGATGTGAGGC 60.366 47.826 0.00 0.00 40.46 4.70
2919 6129 3.820467 TGCAAGTAAACAAGGATGTGAGG 59.180 43.478 0.00 0.00 40.46 3.86
2920 6130 4.275689 TGTGCAAGTAAACAAGGATGTGAG 59.724 41.667 0.00 0.00 40.46 3.51
2921 6131 4.203226 TGTGCAAGTAAACAAGGATGTGA 58.797 39.130 0.00 0.00 40.46 3.58
2922 6132 4.566545 TGTGCAAGTAAACAAGGATGTG 57.433 40.909 0.00 0.00 40.46 3.21
2923 6133 5.789643 ATTGTGCAAGTAAACAAGGATGT 57.210 34.783 0.00 0.00 43.14 3.06
2924 6134 7.481275 AAAATTGTGCAAGTAAACAAGGATG 57.519 32.000 0.00 0.00 39.50 3.51
2995 6205 1.767759 CTCCATGGAGGCCGATTTTT 58.232 50.000 31.14 0.00 38.51 1.94
2996 6206 3.502164 CTCCATGGAGGCCGATTTT 57.498 52.632 31.14 0.00 38.51 1.82
3005 6215 3.136750 CTCTCGGCCTCCATGGAG 58.863 66.667 31.69 31.69 41.63 3.86
3006 6216 3.157252 GCTCTCGGCCTCCATGGA 61.157 66.667 15.27 15.27 38.35 3.41
3015 6225 1.669999 ATGGCATTTTGGCTCTCGGC 61.670 55.000 0.00 0.00 44.10 5.54
3016 6226 0.819582 AATGGCATTTTGGCTCTCGG 59.180 50.000 6.96 0.00 44.10 4.63
3017 6227 1.747355 AGAATGGCATTTTGGCTCTCG 59.253 47.619 14.93 0.00 44.10 4.04
3018 6228 2.100418 GGAGAATGGCATTTTGGCTCTC 59.900 50.000 14.93 14.18 44.10 3.20
3019 6229 2.105766 GGAGAATGGCATTTTGGCTCT 58.894 47.619 14.93 5.45 44.10 4.09
3020 6230 2.105766 AGGAGAATGGCATTTTGGCTC 58.894 47.619 14.93 14.91 44.10 4.70
3021 6231 2.242882 AGGAGAATGGCATTTTGGCT 57.757 45.000 14.93 6.52 44.10 4.75
3022 6232 3.638160 TGATAGGAGAATGGCATTTTGGC 59.362 43.478 14.93 1.11 44.03 4.52
3023 6233 5.361857 ACTTGATAGGAGAATGGCATTTTGG 59.638 40.000 14.93 0.00 0.00 3.28
3024 6234 6.461110 ACTTGATAGGAGAATGGCATTTTG 57.539 37.500 14.93 0.00 0.00 2.44
3025 6235 7.814264 CTACTTGATAGGAGAATGGCATTTT 57.186 36.000 14.93 8.80 33.81 1.82
3038 6248 8.206867 TGAATGATTCAACTCCTACTTGATAGG 58.793 37.037 5.21 0.00 43.51 2.57
3039 6249 9.605275 TTGAATGATTCAACTCCTACTTGATAG 57.395 33.333 16.04 0.00 44.21 2.08
3075 6285 7.985752 AGCTGTTTAAGTACGAAAGGCTATATT 59.014 33.333 15.37 0.00 29.74 1.28
3108 6319 3.569701 ACGTCAATGCCAAACAGAATTCT 59.430 39.130 0.88 0.88 0.00 2.40
3129 6374 5.941733 TCACATTCATGATAGTGCAACAAC 58.058 37.500 18.31 0.00 41.43 3.32
3624 6885 5.041287 CCGCGTATCTAATCTCACTTGAAA 58.959 41.667 4.92 0.00 0.00 2.69
3641 6902 0.450583 CTAGTGTGAGAAGCCGCGTA 59.549 55.000 4.92 0.00 0.00 4.42
3646 6907 2.275318 GACATGCTAGTGTGAGAAGCC 58.725 52.381 0.00 0.00 35.33 4.35
3695 6956 4.213694 GGATGCACAGATCTGAACATGATC 59.786 45.833 29.27 17.75 40.26 2.92
3798 7060 9.787435 AATTTTATACACTCACAAGGAAGTACA 57.213 29.630 0.00 0.00 0.00 2.90
3800 7062 9.444600 GGAATTTTATACACTCACAAGGAAGTA 57.555 33.333 0.00 0.00 0.00 2.24
3801 7063 8.164070 AGGAATTTTATACACTCACAAGGAAGT 58.836 33.333 0.00 0.00 0.00 3.01
3802 7064 8.567285 AGGAATTTTATACACTCACAAGGAAG 57.433 34.615 0.00 0.00 0.00 3.46
3804 7066 8.044908 GGTAGGAATTTTATACACTCACAAGGA 58.955 37.037 0.00 0.00 0.00 3.36
3805 7067 7.827236 TGGTAGGAATTTTATACACTCACAAGG 59.173 37.037 0.00 0.00 0.00 3.61
3841 7103 7.008901 GGCGCAATAAACATCATCATATTCATG 59.991 37.037 10.83 0.00 0.00 3.07
3871 7133 2.592308 GGTAGCTGGGAGCAAGGG 59.408 66.667 0.00 0.00 45.56 3.95
4137 7438 4.794003 GCAATGTGAGTTTCCACTTTCCAG 60.794 45.833 0.00 0.00 37.89 3.86
4138 7439 3.068024 GCAATGTGAGTTTCCACTTTCCA 59.932 43.478 0.00 0.00 37.89 3.53
4139 7440 3.319122 AGCAATGTGAGTTTCCACTTTCC 59.681 43.478 0.00 0.00 37.89 3.13
4140 7441 4.574599 AGCAATGTGAGTTTCCACTTTC 57.425 40.909 0.00 0.00 37.89 2.62
4141 7442 4.685924 CAAGCAATGTGAGTTTCCACTTT 58.314 39.130 0.00 0.00 37.89 2.66
4142 7443 3.491447 GCAAGCAATGTGAGTTTCCACTT 60.491 43.478 0.00 0.00 37.89 3.16
4143 7444 2.035066 GCAAGCAATGTGAGTTTCCACT 59.965 45.455 0.00 0.00 37.89 4.00
4144 7445 2.035066 AGCAAGCAATGTGAGTTTCCAC 59.965 45.455 0.00 0.00 37.55 4.02
4168 7469 4.600692 AACCTTTATTGTGTTTCTGGGC 57.399 40.909 0.00 0.00 0.00 5.36
4169 7470 5.983118 GTGAAACCTTTATTGTGTTTCTGGG 59.017 40.000 13.50 0.00 45.02 4.45
4186 7487 3.319122 AGATTTGCCAACTGAGTGAAACC 59.681 43.478 0.00 0.00 37.80 3.27
4200 7501 4.498682 GCTTCCATGTCATACAGATTTGCC 60.499 45.833 0.00 0.00 0.00 4.52
4364 7709 5.965922 ACCCAGTTATTGCTTGCTTTAATC 58.034 37.500 0.00 0.00 0.00 1.75
4530 7875 2.633967 TGCCCTTTCGTTGGTACTCTTA 59.366 45.455 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.