Multiple sequence alignment - TraesCS6D01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G224000 chr6D 100.000 4673 0 0 1 4673 315986476 315981804 0.000000e+00 8630.0
1 TraesCS6D01G224000 chr6D 99.145 117 1 0 95 211 123001120 123001004 1.320000e-50 211.0
2 TraesCS6D01G224000 chr6D 99.145 117 1 0 95 211 190619460 190619576 1.320000e-50 211.0
3 TraesCS6D01G224000 chr6D 97.959 98 2 0 1 98 286953247 286953344 2.240000e-38 171.0
4 TraesCS6D01G224000 chr6D 96.970 99 1 2 1 98 159332787 159332884 1.040000e-36 165.0
5 TraesCS6D01G224000 chr6D 83.607 122 13 7 1553 1672 440679465 440679581 1.780000e-19 108.0
6 TraesCS6D01G224000 chr6B 94.308 3584 118 25 522 4056 508818874 508822420 0.000000e+00 5409.0
7 TraesCS6D01G224000 chr6B 88.366 361 15 10 4048 4408 508823046 508823379 4.350000e-110 409.0
8 TraesCS6D01G224000 chr6B 87.413 286 31 3 231 515 508817511 508817792 1.620000e-84 324.0
9 TraesCS6D01G224000 chr6B 90.476 147 9 3 4441 4587 508823380 508823521 6.170000e-44 189.0
10 TraesCS6D01G224000 chr6B 79.433 141 29 0 2020 2160 16554555 16554415 2.980000e-17 100.0
11 TraesCS6D01G224000 chr6A 93.857 2637 103 26 613 3226 453871704 453869104 0.000000e+00 3917.0
12 TraesCS6D01G224000 chr6A 95.726 889 24 3 3222 4108 453869056 453868180 0.000000e+00 1419.0
13 TraesCS6D01G224000 chr6A 87.097 310 37 2 214 520 453874331 453874022 9.620000e-92 348.0
14 TraesCS6D01G224000 chr6A 89.568 278 19 4 4112 4381 453866622 453866347 1.240000e-90 344.0
15 TraesCS6D01G224000 chr6A 89.583 144 9 3 4449 4587 453866238 453866096 1.340000e-40 178.0
16 TraesCS6D01G224000 chr6A 95.745 47 2 0 522 568 453873991 453873945 5.010000e-10 76.8
17 TraesCS6D01G224000 chr5B 89.145 433 43 2 2105 2533 154054242 154054674 1.910000e-148 536.0
18 TraesCS6D01G224000 chr5B 88.684 433 45 2 2105 2533 154015550 154015118 4.140000e-145 525.0
19 TraesCS6D01G224000 chr5B 93.151 73 4 1 2775 2847 154054680 154054751 6.390000e-19 106.0
20 TraesCS6D01G224000 chr5B 92.857 70 4 1 2778 2847 154015109 154015041 2.980000e-17 100.0
21 TraesCS6D01G224000 chr7B 88.222 433 47 2 2105 2533 715318874 715319306 8.970000e-142 514.0
22 TraesCS6D01G224000 chr7B 93.151 73 4 1 2775 2847 715319312 715319383 6.390000e-19 106.0
23 TraesCS6D01G224000 chr7B 92.453 53 3 1 4178 4230 228390935 228390884 1.800000e-09 75.0
24 TraesCS6D01G224000 chr7D 99.160 119 1 0 95 213 544984813 544984695 1.020000e-51 215.0
25 TraesCS6D01G224000 chr7D 99.153 118 1 0 95 212 558869312 558869195 3.660000e-51 213.0
26 TraesCS6D01G224000 chr4D 99.153 118 1 0 95 212 333827021 333827138 3.660000e-51 213.0
27 TraesCS6D01G224000 chr4D 99.153 118 1 0 95 212 333842254 333842371 3.660000e-51 213.0
28 TraesCS6D01G224000 chr4D 99.153 118 1 0 95 212 333846501 333846618 3.660000e-51 213.0
29 TraesCS6D01G224000 chr4D 97.959 98 2 0 1 98 385547837 385547740 2.240000e-38 171.0
30 TraesCS6D01G224000 chr1D 99.145 117 1 0 95 211 96792197 96792081 1.320000e-50 211.0
31 TraesCS6D01G224000 chr1D 99.145 117 1 0 95 211 96831546 96831430 1.320000e-50 211.0
32 TraesCS6D01G224000 chr1D 97.959 98 2 0 1 98 220602744 220602647 2.240000e-38 171.0
33 TraesCS6D01G224000 chr1D 97.959 98 2 0 1 98 375716262 375716359 2.240000e-38 171.0
34 TraesCS6D01G224000 chr1D 97.938 97 2 0 1 97 114878540 114878444 8.040000e-38 169.0
35 TraesCS6D01G224000 chr1D 97.938 97 2 0 1 97 117559531 117559435 8.040000e-38 169.0
36 TraesCS6D01G224000 chr1D 87.879 66 7 1 4169 4234 202298726 202298662 5.010000e-10 76.8
37 TraesCS6D01G224000 chr2D 97.959 98 2 0 1 98 564980090 564979993 2.240000e-38 171.0
38 TraesCS6D01G224000 chr2D 92.593 54 3 1 4177 4230 15682985 15682933 5.010000e-10 76.8
39 TraesCS6D01G224000 chr2D 92.593 54 3 1 4177 4230 436111424 436111372 5.010000e-10 76.8
40 TraesCS6D01G224000 chrUn 96.939 98 3 0 1 98 391672467 391672370 1.040000e-36 165.0
41 TraesCS6D01G224000 chr3B 80.851 141 27 0 2020 2160 16704528 16704388 1.370000e-20 111.0
42 TraesCS6D01G224000 chr7A 83.607 122 13 7 1553 1672 407540600 407540716 1.780000e-19 108.0
43 TraesCS6D01G224000 chr7A 84.146 82 12 1 441 521 487732729 487732648 1.390000e-10 78.7
44 TraesCS6D01G224000 chr3A 83.607 122 13 7 1553 1672 121988447 121988331 1.780000e-19 108.0
45 TraesCS6D01G224000 chr2B 91.525 59 4 1 4172 4230 631204966 631204909 3.880000e-11 80.5
46 TraesCS6D01G224000 chr2B 89.231 65 4 3 4167 4230 483458095 483458033 1.390000e-10 78.7
47 TraesCS6D01G224000 chr2B 100.000 30 0 0 473 502 514960474 514960503 6.530000e-04 56.5
48 TraesCS6D01G224000 chr5D 92.593 54 3 1 4177 4230 382868496 382868444 5.010000e-10 76.8
49 TraesCS6D01G224000 chr4A 91.228 57 4 1 4174 4230 556767951 556768006 5.010000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G224000 chr6D 315981804 315986476 4672 True 8630.000000 8630 100.000000 1 4673 1 chr6D.!!$R2 4672
1 TraesCS6D01G224000 chr6B 508817511 508823521 6010 False 1582.750000 5409 90.140750 231 4587 4 chr6B.!!$F1 4356
2 TraesCS6D01G224000 chr6A 453866096 453874331 8235 True 1047.133333 3917 91.929333 214 4587 6 chr6A.!!$R1 4373
3 TraesCS6D01G224000 chr5B 154054242 154054751 509 False 321.000000 536 91.148000 2105 2847 2 chr5B.!!$F1 742
4 TraesCS6D01G224000 chr5B 154015041 154015550 509 True 312.500000 525 90.770500 2105 2847 2 chr5B.!!$R1 742
5 TraesCS6D01G224000 chr7B 715318874 715319383 509 False 310.000000 514 90.686500 2105 2847 2 chr7B.!!$F1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.034896 CTTGGTACTGGGCTTCACGT 59.965 55.0 0.0 0.0 0.0 4.49 F
771 4047 0.112412 GCCCCCAACCAGAAAGAGAA 59.888 55.0 0.0 0.0 0.0 2.87 F
2305 5607 0.037605 GGAACTACCCGGTGAGTGTG 60.038 60.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 4436 0.108138 ATTGGCGACGAAGGAAGAGG 60.108 55.000 0.00 0.00 0.00 3.69 R
2467 5773 1.193874 GTAAGAGAAAACGGTGCCACG 59.806 52.381 0.00 0.00 40.31 4.94 R
3935 7295 0.770008 CAAACTTTAACAGCGCACGC 59.230 50.000 11.47 6.99 42.33 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.795970 CTTGACCAATATAACCAGCGAC 57.204 45.455 0.00 0.00 0.00 5.19
22 23 3.897141 TGACCAATATAACCAGCGACA 57.103 42.857 0.00 0.00 0.00 4.35
23 24 4.209307 TGACCAATATAACCAGCGACAA 57.791 40.909 0.00 0.00 0.00 3.18
24 25 4.776349 TGACCAATATAACCAGCGACAAT 58.224 39.130 0.00 0.00 0.00 2.71
25 26 5.919755 TGACCAATATAACCAGCGACAATA 58.080 37.500 0.00 0.00 0.00 1.90
26 27 6.530120 TGACCAATATAACCAGCGACAATAT 58.470 36.000 0.00 0.00 0.00 1.28
27 28 6.649141 TGACCAATATAACCAGCGACAATATC 59.351 38.462 0.00 0.00 0.00 1.63
28 29 6.769512 ACCAATATAACCAGCGACAATATCT 58.230 36.000 0.00 0.00 0.00 1.98
29 30 6.874134 ACCAATATAACCAGCGACAATATCTC 59.126 38.462 0.00 0.00 0.00 2.75
30 31 6.313905 CCAATATAACCAGCGACAATATCTCC 59.686 42.308 0.00 0.00 0.00 3.71
31 32 4.955811 ATAACCAGCGACAATATCTCCA 57.044 40.909 0.00 0.00 0.00 3.86
32 33 3.627395 AACCAGCGACAATATCTCCAA 57.373 42.857 0.00 0.00 0.00 3.53
33 34 3.845781 ACCAGCGACAATATCTCCAAT 57.154 42.857 0.00 0.00 0.00 3.16
34 35 3.470709 ACCAGCGACAATATCTCCAATG 58.529 45.455 0.00 0.00 0.00 2.82
35 36 2.225019 CCAGCGACAATATCTCCAATGC 59.775 50.000 0.00 0.00 0.00 3.56
36 37 3.136763 CAGCGACAATATCTCCAATGCT 58.863 45.455 0.00 0.00 0.00 3.79
37 38 3.186001 CAGCGACAATATCTCCAATGCTC 59.814 47.826 0.00 0.00 0.00 4.26
38 39 3.133691 GCGACAATATCTCCAATGCTCA 58.866 45.455 0.00 0.00 0.00 4.26
39 40 3.561310 GCGACAATATCTCCAATGCTCAA 59.439 43.478 0.00 0.00 0.00 3.02
40 41 4.319333 GCGACAATATCTCCAATGCTCAAG 60.319 45.833 0.00 0.00 0.00 3.02
41 42 4.813161 CGACAATATCTCCAATGCTCAAGT 59.187 41.667 0.00 0.00 0.00 3.16
42 43 5.295292 CGACAATATCTCCAATGCTCAAGTT 59.705 40.000 0.00 0.00 0.00 2.66
43 44 6.479990 CGACAATATCTCCAATGCTCAAGTTA 59.520 38.462 0.00 0.00 0.00 2.24
44 45 7.307042 CGACAATATCTCCAATGCTCAAGTTAG 60.307 40.741 0.00 0.00 0.00 2.34
45 46 6.261826 ACAATATCTCCAATGCTCAAGTTAGC 59.738 38.462 0.00 0.00 43.08 3.09
54 55 2.704572 GCTCAAGTTAGCATGGTCAGT 58.295 47.619 0.00 0.00 42.30 3.41
55 56 2.417933 GCTCAAGTTAGCATGGTCAGTG 59.582 50.000 0.00 0.00 42.30 3.66
56 57 3.866066 GCTCAAGTTAGCATGGTCAGTGA 60.866 47.826 0.00 0.58 42.30 3.41
57 58 4.511527 CTCAAGTTAGCATGGTCAGTGAT 58.488 43.478 0.00 0.00 0.00 3.06
58 59 5.664457 CTCAAGTTAGCATGGTCAGTGATA 58.336 41.667 0.00 0.00 0.00 2.15
59 60 6.239217 TCAAGTTAGCATGGTCAGTGATAT 57.761 37.500 0.00 0.00 0.00 1.63
60 61 6.283694 TCAAGTTAGCATGGTCAGTGATATC 58.716 40.000 0.00 0.00 0.00 1.63
61 62 5.220710 AGTTAGCATGGTCAGTGATATCC 57.779 43.478 0.00 0.00 0.00 2.59
62 63 4.655649 AGTTAGCATGGTCAGTGATATCCA 59.344 41.667 0.00 3.60 0.00 3.41
63 64 3.766068 AGCATGGTCAGTGATATCCAG 57.234 47.619 7.03 1.78 33.33 3.86
64 65 3.044156 AGCATGGTCAGTGATATCCAGT 58.956 45.455 7.03 0.00 33.33 4.00
65 66 3.070734 AGCATGGTCAGTGATATCCAGTC 59.929 47.826 7.03 2.09 33.33 3.51
66 67 3.070734 GCATGGTCAGTGATATCCAGTCT 59.929 47.826 7.03 0.00 33.33 3.24
67 68 4.629092 CATGGTCAGTGATATCCAGTCTG 58.371 47.826 7.03 4.47 33.33 3.51
68 69 3.033909 TGGTCAGTGATATCCAGTCTGG 58.966 50.000 13.21 13.21 39.43 3.86
69 70 2.224161 GGTCAGTGATATCCAGTCTGGC 60.224 54.545 14.64 0.45 37.47 4.85
70 71 2.697751 GTCAGTGATATCCAGTCTGGCT 59.302 50.000 14.64 7.29 37.47 4.75
71 72 2.961741 TCAGTGATATCCAGTCTGGCTC 59.038 50.000 14.64 10.81 37.47 4.70
72 73 2.964464 CAGTGATATCCAGTCTGGCTCT 59.036 50.000 14.64 3.72 37.47 4.09
73 74 2.964464 AGTGATATCCAGTCTGGCTCTG 59.036 50.000 14.64 0.00 37.47 3.35
74 75 1.690893 TGATATCCAGTCTGGCTCTGC 59.309 52.381 14.64 3.17 37.47 4.26
75 76 0.678395 ATATCCAGTCTGGCTCTGCG 59.322 55.000 14.64 0.00 37.47 5.18
76 77 1.395045 TATCCAGTCTGGCTCTGCGG 61.395 60.000 14.64 0.00 37.47 5.69
91 92 4.749310 CGGCGCTCCAGCAGTTCT 62.749 66.667 7.64 0.00 42.21 3.01
92 93 2.359230 GGCGCTCCAGCAGTTCTT 60.359 61.111 7.64 0.00 42.21 2.52
93 94 2.394563 GGCGCTCCAGCAGTTCTTC 61.395 63.158 7.64 0.00 42.21 2.87
94 95 2.394563 GCGCTCCAGCAGTTCTTCC 61.395 63.158 0.00 0.00 42.21 3.46
95 96 1.294780 CGCTCCAGCAGTTCTTCCT 59.705 57.895 0.00 0.00 42.21 3.36
96 97 0.321122 CGCTCCAGCAGTTCTTCCTT 60.321 55.000 0.00 0.00 42.21 3.36
97 98 1.066858 CGCTCCAGCAGTTCTTCCTTA 60.067 52.381 0.00 0.00 42.21 2.69
98 99 2.612972 CGCTCCAGCAGTTCTTCCTTAA 60.613 50.000 0.00 0.00 42.21 1.85
99 100 3.006247 GCTCCAGCAGTTCTTCCTTAAG 58.994 50.000 0.00 0.00 41.59 1.85
100 101 3.006247 CTCCAGCAGTTCTTCCTTAAGC 58.994 50.000 0.00 0.00 32.36 3.09
101 102 2.087646 CCAGCAGTTCTTCCTTAAGCC 58.912 52.381 0.00 0.00 32.36 4.35
102 103 2.087646 CAGCAGTTCTTCCTTAAGCCC 58.912 52.381 0.00 0.00 32.36 5.19
103 104 1.705186 AGCAGTTCTTCCTTAAGCCCA 59.295 47.619 0.00 0.00 32.36 5.36
104 105 2.310052 AGCAGTTCTTCCTTAAGCCCAT 59.690 45.455 0.00 0.00 32.36 4.00
105 106 3.092301 GCAGTTCTTCCTTAAGCCCATT 58.908 45.455 0.00 0.00 32.36 3.16
106 107 4.018415 AGCAGTTCTTCCTTAAGCCCATTA 60.018 41.667 0.00 0.00 32.36 1.90
107 108 4.889995 GCAGTTCTTCCTTAAGCCCATTAT 59.110 41.667 0.00 0.00 32.36 1.28
108 109 5.360999 GCAGTTCTTCCTTAAGCCCATTATT 59.639 40.000 0.00 0.00 32.36 1.40
109 110 6.681368 GCAGTTCTTCCTTAAGCCCATTATTG 60.681 42.308 0.00 0.00 32.36 1.90
110 111 6.603201 CAGTTCTTCCTTAAGCCCATTATTGA 59.397 38.462 0.00 0.00 32.36 2.57
111 112 7.286316 CAGTTCTTCCTTAAGCCCATTATTGAT 59.714 37.037 0.00 0.00 32.36 2.57
112 113 7.503902 AGTTCTTCCTTAAGCCCATTATTGATC 59.496 37.037 0.00 0.00 32.36 2.92
113 114 6.306987 TCTTCCTTAAGCCCATTATTGATCC 58.693 40.000 0.00 0.00 32.36 3.36
114 115 4.651778 TCCTTAAGCCCATTATTGATCCG 58.348 43.478 0.00 0.00 0.00 4.18
115 116 3.191371 CCTTAAGCCCATTATTGATCCGC 59.809 47.826 0.00 0.00 0.00 5.54
116 117 1.620822 AAGCCCATTATTGATCCGCC 58.379 50.000 0.00 0.00 0.00 6.13
117 118 0.478072 AGCCCATTATTGATCCGCCA 59.522 50.000 0.00 0.00 0.00 5.69
118 119 1.076024 AGCCCATTATTGATCCGCCAT 59.924 47.619 0.00 0.00 0.00 4.40
119 120 1.474077 GCCCATTATTGATCCGCCATC 59.526 52.381 0.00 0.00 0.00 3.51
120 121 2.794103 CCCATTATTGATCCGCCATCA 58.206 47.619 0.00 0.00 39.99 3.07
121 122 3.359033 CCCATTATTGATCCGCCATCAT 58.641 45.455 0.00 0.00 41.42 2.45
122 123 3.379372 CCCATTATTGATCCGCCATCATC 59.621 47.826 0.00 0.00 41.42 2.92
123 124 4.011698 CCATTATTGATCCGCCATCATCA 58.988 43.478 0.00 0.00 41.42 3.07
124 125 4.460034 CCATTATTGATCCGCCATCATCAA 59.540 41.667 0.00 0.00 41.42 2.57
125 126 5.392703 CCATTATTGATCCGCCATCATCAAG 60.393 44.000 0.00 0.00 41.42 3.02
126 127 1.311859 TTGATCCGCCATCATCAAGC 58.688 50.000 0.00 0.00 41.42 4.01
127 128 0.471191 TGATCCGCCATCATCAAGCT 59.529 50.000 0.00 0.00 36.51 3.74
128 129 1.134007 TGATCCGCCATCATCAAGCTT 60.134 47.619 0.00 0.00 36.51 3.74
129 130 1.266175 GATCCGCCATCATCAAGCTTG 59.734 52.381 20.81 20.81 0.00 4.01
130 131 0.749091 TCCGCCATCATCAAGCTTGG 60.749 55.000 25.73 11.08 0.00 3.61
131 132 1.033746 CCGCCATCATCAAGCTTGGT 61.034 55.000 25.73 17.40 0.00 3.67
132 133 1.667236 CGCCATCATCAAGCTTGGTA 58.333 50.000 25.73 8.52 0.00 3.25
133 134 1.331756 CGCCATCATCAAGCTTGGTAC 59.668 52.381 25.73 6.25 0.00 3.34
134 135 2.648059 GCCATCATCAAGCTTGGTACT 58.352 47.619 25.73 6.99 0.00 2.73
135 136 2.357009 GCCATCATCAAGCTTGGTACTG 59.643 50.000 25.73 17.88 0.00 2.74
136 137 2.947652 CCATCATCAAGCTTGGTACTGG 59.052 50.000 25.73 22.27 0.00 4.00
137 138 2.787473 TCATCAAGCTTGGTACTGGG 57.213 50.000 25.73 7.13 0.00 4.45
138 139 1.098050 CATCAAGCTTGGTACTGGGC 58.902 55.000 25.73 0.00 0.00 5.36
139 140 0.995024 ATCAAGCTTGGTACTGGGCT 59.005 50.000 25.73 0.00 36.53 5.19
140 141 0.771127 TCAAGCTTGGTACTGGGCTT 59.229 50.000 25.73 11.69 44.43 4.35
141 142 1.168714 CAAGCTTGGTACTGGGCTTC 58.831 55.000 19.14 0.00 42.15 3.86
142 143 0.771127 AAGCTTGGTACTGGGCTTCA 59.229 50.000 0.00 0.00 40.40 3.02
143 144 0.036875 AGCTTGGTACTGGGCTTCAC 59.963 55.000 0.00 0.00 0.00 3.18
144 145 1.298859 GCTTGGTACTGGGCTTCACG 61.299 60.000 0.00 0.00 0.00 4.35
145 146 0.034896 CTTGGTACTGGGCTTCACGT 59.965 55.000 0.00 0.00 0.00 4.49
146 147 0.250124 TTGGTACTGGGCTTCACGTG 60.250 55.000 9.94 9.94 0.00 4.49
147 148 1.116536 TGGTACTGGGCTTCACGTGA 61.117 55.000 15.76 15.76 0.00 4.35
148 149 0.249398 GGTACTGGGCTTCACGTGAT 59.751 55.000 20.80 4.82 0.00 3.06
149 150 1.359848 GTACTGGGCTTCACGTGATG 58.640 55.000 20.80 22.21 0.00 3.07
150 151 1.067142 GTACTGGGCTTCACGTGATGA 60.067 52.381 29.54 12.23 34.65 2.92
151 152 0.615331 ACTGGGCTTCACGTGATGAT 59.385 50.000 29.54 10.13 37.11 2.45
152 153 1.293924 CTGGGCTTCACGTGATGATC 58.706 55.000 29.54 20.72 37.11 2.92
153 154 0.612744 TGGGCTTCACGTGATGATCA 59.387 50.000 29.54 22.55 37.11 2.92
154 155 1.210234 TGGGCTTCACGTGATGATCAT 59.790 47.619 29.54 8.25 37.11 2.45
155 156 2.292267 GGGCTTCACGTGATGATCATT 58.708 47.619 29.54 0.00 37.11 2.57
156 157 3.118445 TGGGCTTCACGTGATGATCATTA 60.118 43.478 29.54 2.22 37.11 1.90
157 158 4.067896 GGGCTTCACGTGATGATCATTAT 58.932 43.478 29.54 0.00 37.11 1.28
158 159 4.083643 GGGCTTCACGTGATGATCATTATG 60.084 45.833 29.54 16.05 37.11 1.90
159 160 4.751600 GGCTTCACGTGATGATCATTATGA 59.248 41.667 29.54 11.96 37.11 2.15
160 161 5.333645 GGCTTCACGTGATGATCATTATGAC 60.334 44.000 29.54 11.32 37.11 3.06
161 162 5.611197 GCTTCACGTGATGATCATTATGACG 60.611 44.000 29.54 21.17 37.11 4.35
162 163 4.932146 TCACGTGATGATCATTATGACGT 58.068 39.130 22.61 21.68 29.99 4.34
163 164 6.067263 TCACGTGATGATCATTATGACGTA 57.933 37.500 22.61 13.54 29.99 3.57
164 165 6.500041 TCACGTGATGATCATTATGACGTAA 58.500 36.000 22.61 12.54 29.99 3.18
165 166 6.416750 TCACGTGATGATCATTATGACGTAAC 59.583 38.462 22.61 2.31 29.99 2.50
166 167 5.690409 ACGTGATGATCATTATGACGTAACC 59.310 40.000 22.61 1.84 0.00 2.85
167 168 5.118664 CGTGATGATCATTATGACGTAACCC 59.881 44.000 13.13 0.00 0.00 4.11
168 169 5.118664 GTGATGATCATTATGACGTAACCCG 59.881 44.000 10.14 0.00 44.03 5.28
169 170 3.985008 TGATCATTATGACGTAACCCGG 58.015 45.455 0.00 0.00 42.24 5.73
175 176 4.152964 GACGTAACCCGGCCCCTC 62.153 72.222 0.00 0.00 39.28 4.30
178 179 3.793888 GTAACCCGGCCCCTCCTG 61.794 72.222 0.00 0.00 0.00 3.86
190 191 3.775654 CTCCTGGGCGGGTGACTC 61.776 72.222 0.00 0.00 0.00 3.36
191 192 4.316823 TCCTGGGCGGGTGACTCT 62.317 66.667 0.00 0.00 0.00 3.24
192 193 2.363795 CCTGGGCGGGTGACTCTA 60.364 66.667 0.00 0.00 0.00 2.43
193 194 1.987855 CCTGGGCGGGTGACTCTAA 60.988 63.158 0.00 0.00 0.00 2.10
194 195 1.338136 CCTGGGCGGGTGACTCTAAT 61.338 60.000 0.00 0.00 0.00 1.73
195 196 0.179073 CTGGGCGGGTGACTCTAATG 60.179 60.000 0.00 0.00 0.00 1.90
196 197 1.146263 GGGCGGGTGACTCTAATGG 59.854 63.158 0.00 0.00 0.00 3.16
197 198 1.623542 GGGCGGGTGACTCTAATGGT 61.624 60.000 0.00 0.00 0.00 3.55
198 199 0.252197 GGCGGGTGACTCTAATGGTT 59.748 55.000 0.00 0.00 0.00 3.67
199 200 1.483415 GGCGGGTGACTCTAATGGTTA 59.517 52.381 0.00 0.00 0.00 2.85
200 201 2.104281 GGCGGGTGACTCTAATGGTTAT 59.896 50.000 0.00 0.00 0.00 1.89
201 202 3.322828 GGCGGGTGACTCTAATGGTTATA 59.677 47.826 0.00 0.00 0.00 0.98
202 203 4.020485 GGCGGGTGACTCTAATGGTTATAT 60.020 45.833 0.00 0.00 0.00 0.86
203 204 5.169295 GCGGGTGACTCTAATGGTTATATC 58.831 45.833 0.00 0.00 0.00 1.63
204 205 5.721232 CGGGTGACTCTAATGGTTATATCC 58.279 45.833 0.00 0.00 0.00 2.59
205 206 5.480772 CGGGTGACTCTAATGGTTATATCCT 59.519 44.000 1.59 0.00 0.00 3.24
206 207 6.350277 CGGGTGACTCTAATGGTTATATCCTC 60.350 46.154 1.59 0.00 0.00 3.71
207 208 6.497259 GGGTGACTCTAATGGTTATATCCTCA 59.503 42.308 1.59 0.00 0.00 3.86
208 209 7.016268 GGGTGACTCTAATGGTTATATCCTCAA 59.984 40.741 1.59 0.00 0.00 3.02
209 210 7.873505 GGTGACTCTAATGGTTATATCCTCAAC 59.126 40.741 1.59 0.00 0.00 3.18
210 211 8.421784 GTGACTCTAATGGTTATATCCTCAACA 58.578 37.037 1.59 0.00 0.00 3.33
211 212 8.642432 TGACTCTAATGGTTATATCCTCAACAG 58.358 37.037 1.59 0.00 0.00 3.16
212 213 7.445945 ACTCTAATGGTTATATCCTCAACAGC 58.554 38.462 1.59 0.00 0.00 4.40
252 253 3.181465 CCAGTTATGTAATCTCCCAGCGT 60.181 47.826 0.00 0.00 0.00 5.07
263 264 2.406616 CCCAGCGTATGTGTTGGCC 61.407 63.158 0.00 0.00 0.00 5.36
271 272 2.285083 GTATGTGTTGGCCGCTATTGA 58.715 47.619 0.00 0.00 0.00 2.57
286 287 0.820871 ATTGAGTCGAGTGGAGCTCC 59.179 55.000 26.78 26.78 41.10 4.70
296 297 2.785743 TGGAGCTCCCAAAAGCCTA 58.214 52.632 29.95 4.78 43.29 3.93
313 314 4.127566 GCCTACATGTTTGGCAATCAAT 57.872 40.909 27.24 8.84 45.46 2.57
314 315 4.506758 GCCTACATGTTTGGCAATCAATT 58.493 39.130 27.24 7.47 45.46 2.32
317 318 6.402442 GCCTACATGTTTGGCAATCAATTTTC 60.402 38.462 27.24 0.96 45.46 2.29
328 329 1.091537 TCAATTTTCCCGGACGATGC 58.908 50.000 0.73 0.00 0.00 3.91
345 346 4.377370 CAATCCGTGCTGTGACCA 57.623 55.556 0.00 0.00 0.00 4.02
347 348 2.022764 CAATCCGTGCTGTGACCATA 57.977 50.000 0.00 0.00 0.00 2.74
387 388 5.703592 TCGTAATTGTAATGCAAGGTGTTCT 59.296 36.000 0.00 0.00 40.86 3.01
424 428 4.215613 AGAAAACCTTTGGTGCGATCTAAC 59.784 41.667 0.00 0.00 35.34 2.34
426 430 3.134574 ACCTTTGGTGCGATCTAACAA 57.865 42.857 0.00 0.00 32.98 2.83
435 439 9.990360 TTTGGTGCGATCTAACAATATCTATAA 57.010 29.630 0.00 0.00 0.00 0.98
469 473 1.597461 GCTCCCTATATGTCCGGGC 59.403 63.158 0.00 0.00 37.89 6.13
517 521 2.129555 AATCTCAACCAGCCGCACCT 62.130 55.000 0.00 0.00 0.00 4.00
551 1630 0.919710 ATCCCTCCAGCCCTAAACAC 59.080 55.000 0.00 0.00 0.00 3.32
644 3919 3.519510 ACCCCGAATCAGATCAGAGAAAA 59.480 43.478 0.00 0.00 0.00 2.29
713 3989 5.497635 TTCATTTATTTGCAGCATCGCTA 57.502 34.783 0.00 0.00 36.40 4.26
770 4046 1.767692 GCCCCCAACCAGAAAGAGA 59.232 57.895 0.00 0.00 0.00 3.10
771 4047 0.112412 GCCCCCAACCAGAAAGAGAA 59.888 55.000 0.00 0.00 0.00 2.87
772 4048 1.480498 GCCCCCAACCAGAAAGAGAAA 60.480 52.381 0.00 0.00 0.00 2.52
773 4049 2.519013 CCCCCAACCAGAAAGAGAAAG 58.481 52.381 0.00 0.00 0.00 2.62
774 4050 2.108250 CCCCCAACCAGAAAGAGAAAGA 59.892 50.000 0.00 0.00 0.00 2.52
775 4051 3.416156 CCCCAACCAGAAAGAGAAAGAG 58.584 50.000 0.00 0.00 0.00 2.85
884 4170 1.764054 CTTCTGCCTCCCTCGGGAT 60.764 63.158 4.90 0.00 44.24 3.85
1096 4395 0.457851 CCATCACTCGTCCTCAGGTC 59.542 60.000 0.00 0.00 0.00 3.85
1097 4396 1.177401 CATCACTCGTCCTCAGGTCA 58.823 55.000 0.00 0.00 0.00 4.02
1137 4436 2.147150 GTCTCCTCTTGGCAGTTGTTC 58.853 52.381 0.00 0.00 0.00 3.18
1138 4437 1.072331 TCTCCTCTTGGCAGTTGTTCC 59.928 52.381 0.00 0.00 0.00 3.62
1141 4440 1.072965 CCTCTTGGCAGTTGTTCCTCT 59.927 52.381 0.00 0.00 0.00 3.69
1146 4445 1.494721 TGGCAGTTGTTCCTCTTCCTT 59.505 47.619 0.00 0.00 0.00 3.36
1148 4447 1.801178 GCAGTTGTTCCTCTTCCTTCG 59.199 52.381 0.00 0.00 0.00 3.79
1340 4639 1.811941 GCTTAGCTCCCCCTTCATTCG 60.812 57.143 0.00 0.00 0.00 3.34
1363 4662 1.213678 TGATCCCCAGGATTGCTTCTG 59.786 52.381 0.00 0.00 43.27 3.02
1411 4710 2.597305 GACAACGATCGCGAGTTTGTAT 59.403 45.455 24.40 10.07 41.64 2.29
1412 4711 2.991190 ACAACGATCGCGAGTTTGTATT 59.009 40.909 23.58 2.83 41.64 1.89
1413 4712 3.430895 ACAACGATCGCGAGTTTGTATTT 59.569 39.130 23.58 2.12 41.64 1.40
1445 4745 1.502640 CGTCTCCGAAGCTCGTCTT 59.497 57.895 0.00 0.00 38.40 3.01
1591 4892 2.222445 GCGTTTCTCGTGTTAACCACAT 59.778 45.455 2.48 0.00 44.78 3.21
1985 5287 7.881775 ATGACCCTTCATAAATTGGAACTAC 57.118 36.000 0.00 0.00 40.96 2.73
2254 5556 2.619074 GCAATACAGAGGTGGAGGCTTT 60.619 50.000 0.00 0.00 0.00 3.51
2275 5577 9.574516 GGCTTTATCTCCTTGGAGAATTTATTA 57.425 33.333 21.48 7.27 34.56 0.98
2305 5607 0.037605 GGAACTACCCGGTGAGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
2393 5695 7.113658 TCTGACAAAGTCTTCACTCTTTAGT 57.886 36.000 0.00 0.00 33.38 2.24
2467 5773 4.985413 TGCTGCAGTGCTAAATATGAAAC 58.015 39.130 17.60 0.00 0.00 2.78
2489 5795 3.656559 GTGGCACCGTTTTCTCTTACTA 58.343 45.455 6.29 0.00 0.00 1.82
2527 5833 7.933577 TGTAGTATTCCTCTGATAATTGCCTTG 59.066 37.037 0.00 0.00 0.00 3.61
2533 5839 6.899089 TCCTCTGATAATTGCCTTGATGTAA 58.101 36.000 0.00 0.00 0.00 2.41
2601 5907 5.099042 AGCGAATCCAAAGTACACCTTAT 57.901 39.130 0.00 0.00 31.48 1.73
2681 5987 7.039504 ACTGAAACAGTAATCTCGTACCCTTAA 60.040 37.037 2.43 0.00 43.46 1.85
2719 6025 7.886629 ATATGGTCATCACACTAAGCAATTT 57.113 32.000 0.00 0.00 0.00 1.82
2754 6060 7.147846 TGCAGAAATCTTTTCAGGAACTTCTTT 60.148 33.333 3.11 0.00 34.60 2.52
2920 6226 8.894768 ATAATACTAGTTCCTGCAGTGAAATC 57.105 34.615 17.27 8.52 0.00 2.17
3090 6396 4.507710 TCTACAAGAGCTGCTTACCATTG 58.492 43.478 2.53 7.20 34.31 2.82
3093 6399 1.289160 AGAGCTGCTTACCATTGGGA 58.711 50.000 2.53 0.00 38.05 4.37
3162 6468 5.701290 AGTGCATTAACAGTTCTTACCACTC 59.299 40.000 0.00 0.00 0.00 3.51
3422 6781 1.146774 TGCAACCAGGAATTTCTCCCA 59.853 47.619 0.00 0.00 46.81 4.37
3510 6869 6.700081 GCCCTTAACCTTAACACTTTTTGAAG 59.300 38.462 0.00 0.00 0.00 3.02
3698 7058 4.765339 AGTAACTGAAACCTTAACATGGCC 59.235 41.667 0.00 0.00 0.00 5.36
3933 7293 1.295792 GTAGGGTGTGTGTGTGTGTG 58.704 55.000 0.00 0.00 0.00 3.82
3934 7294 0.462937 TAGGGTGTGTGTGTGTGTGC 60.463 55.000 0.00 0.00 0.00 4.57
3935 7295 2.403186 GGTGTGTGTGTGTGTGCG 59.597 61.111 0.00 0.00 0.00 5.34
3936 7296 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
3937 7297 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3938 7298 3.860125 GTGTGTGTGTGTGCGCGT 61.860 61.111 8.43 0.00 0.00 6.01
3939 7299 3.858989 TGTGTGTGTGTGCGCGTG 61.859 61.111 8.43 0.00 0.00 5.34
3979 7339 2.631160 TGCCCATAATACCACGGAAG 57.369 50.000 0.00 0.00 0.00 3.46
3980 7340 1.142060 TGCCCATAATACCACGGAAGG 59.858 52.381 0.00 0.00 0.00 3.46
3981 7341 1.418637 GCCCATAATACCACGGAAGGA 59.581 52.381 0.00 0.00 0.00 3.36
3982 7342 2.158726 GCCCATAATACCACGGAAGGAA 60.159 50.000 0.00 0.00 0.00 3.36
4143 9691 3.367703 CCTTGTTCCAAATGCAGACCATC 60.368 47.826 0.00 0.00 31.43 3.51
4147 9695 3.159213 TCCAAATGCAGACCATCTTGT 57.841 42.857 0.00 0.00 31.43 3.16
4171 9719 2.103042 GTGGCCTAGCTGCAACTCG 61.103 63.158 3.32 0.00 32.18 4.18
4198 9746 2.986050 ACACCCTCGGTCCCATAATAT 58.014 47.619 0.00 0.00 31.02 1.28
4202 9750 4.775780 CACCCTCGGTCCCATAATATAAGA 59.224 45.833 0.00 0.00 31.02 2.10
4203 9751 5.024118 ACCCTCGGTCCCATAATATAAGAG 58.976 45.833 0.00 0.00 0.00 2.85
4204 9752 4.141914 CCCTCGGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4387 9943 1.742268 GGCTTCCACTCTTTGATCTGC 59.258 52.381 0.00 0.00 0.00 4.26
4410 9966 4.404691 CCTGAGACAAACAGGCCC 57.595 61.111 0.00 0.00 46.30 5.80
4411 9967 1.303643 CCTGAGACAAACAGGCCCC 60.304 63.158 0.00 0.00 46.30 5.80
4412 9968 1.303643 CTGAGACAAACAGGCCCCC 60.304 63.158 0.00 0.00 0.00 5.40
4413 9969 1.774217 TGAGACAAACAGGCCCCCT 60.774 57.895 0.00 0.00 0.00 4.79
4414 9970 1.002011 GAGACAAACAGGCCCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
4415 9971 2.035783 GACAAACAGGCCCCCTCC 59.964 66.667 0.00 0.00 0.00 4.30
4416 9972 2.780924 ACAAACAGGCCCCCTCCA 60.781 61.111 0.00 0.00 0.00 3.86
4418 9974 1.908299 CAAACAGGCCCCCTCCAAC 60.908 63.158 0.00 0.00 0.00 3.77
4419 9975 2.399607 AAACAGGCCCCCTCCAACA 61.400 57.895 0.00 0.00 0.00 3.33
4420 9976 2.371897 AAACAGGCCCCCTCCAACAG 62.372 60.000 0.00 0.00 0.00 3.16
4421 9977 4.748144 CAGGCCCCCTCCAACAGC 62.748 72.222 0.00 0.00 0.00 4.40
4425 9981 2.043652 CCCCCTCCAACAGCCATG 60.044 66.667 0.00 0.00 0.00 3.66
4427 9983 1.570857 CCCCCTCCAACAGCCATGTA 61.571 60.000 0.00 0.00 39.29 2.29
4428 9984 0.394352 CCCCTCCAACAGCCATGTAC 60.394 60.000 0.00 0.00 39.29 2.90
4429 9985 0.620556 CCCTCCAACAGCCATGTACT 59.379 55.000 0.00 0.00 39.29 2.73
4430 9986 1.837439 CCCTCCAACAGCCATGTACTA 59.163 52.381 0.00 0.00 39.29 1.82
4432 9988 2.236146 CCTCCAACAGCCATGTACTACA 59.764 50.000 0.00 0.00 39.29 2.74
4450 10006 6.721571 ACTACATGTAACATGTACAGCAAC 57.278 37.500 7.06 0.00 33.76 4.17
4451 10048 6.227522 ACTACATGTAACATGTACAGCAACA 58.772 36.000 7.06 3.77 33.76 3.33
4506 10108 0.251634 TGATGCGTAGAATGGGCACA 59.748 50.000 0.00 0.00 39.84 4.57
4560 10162 8.056407 TGATGATCTTACTTACTATCGATGGG 57.944 38.462 13.75 6.22 0.00 4.00
4561 10163 7.670140 TGATGATCTTACTTACTATCGATGGGT 59.330 37.037 13.75 11.61 0.00 4.51
4580 10182 3.752747 GGGTTTTTCAATTGGGCAATCAG 59.247 43.478 5.42 0.00 0.00 2.90
4587 10189 1.683943 ATTGGGCAATCAGTCGATGG 58.316 50.000 0.00 0.00 30.13 3.51
4588 10190 1.031571 TTGGGCAATCAGTCGATGGC 61.032 55.000 1.15 1.15 46.50 4.40
4590 10192 2.325857 GCAATCAGTCGATGGCGC 59.674 61.111 0.00 0.00 38.80 6.53
4591 10193 2.176273 GCAATCAGTCGATGGCGCT 61.176 57.895 7.64 0.00 38.80 5.92
4592 10194 1.930100 CAATCAGTCGATGGCGCTC 59.070 57.895 7.64 0.00 37.46 5.03
4593 10195 0.529337 CAATCAGTCGATGGCGCTCT 60.529 55.000 7.64 0.00 37.46 4.09
4594 10196 1.032794 AATCAGTCGATGGCGCTCTA 58.967 50.000 7.64 0.00 37.46 2.43
4595 10197 0.312416 ATCAGTCGATGGCGCTCTAC 59.688 55.000 7.64 0.00 37.46 2.59
4596 10198 0.748367 TCAGTCGATGGCGCTCTACT 60.748 55.000 7.64 2.31 37.46 2.57
4597 10199 0.317436 CAGTCGATGGCGCTCTACTC 60.317 60.000 7.64 0.00 37.46 2.59
4598 10200 0.748367 AGTCGATGGCGCTCTACTCA 60.748 55.000 7.64 0.00 37.46 3.41
4599 10201 0.100682 GTCGATGGCGCTCTACTCAA 59.899 55.000 7.64 0.00 37.46 3.02
4600 10202 0.382158 TCGATGGCGCTCTACTCAAG 59.618 55.000 7.64 0.00 37.46 3.02
4601 10203 1.211818 CGATGGCGCTCTACTCAAGC 61.212 60.000 7.64 0.00 36.38 4.01
4612 10214 4.069232 CTCAAGCGAGTGGCCGGA 62.069 66.667 5.05 0.00 45.17 5.14
4613 10215 3.376935 CTCAAGCGAGTGGCCGGAT 62.377 63.158 5.05 0.00 45.17 4.18
4614 10216 2.892425 CAAGCGAGTGGCCGGATC 60.892 66.667 5.05 0.00 45.17 3.36
4615 10217 4.514577 AAGCGAGTGGCCGGATCG 62.515 66.667 17.03 17.03 45.17 3.69
4627 10229 1.364171 CGGATCGGAGGACACATCC 59.636 63.158 0.00 0.00 46.69 3.51
4639 10241 3.878778 GGACACATCCTTCAGTTATGCT 58.121 45.455 0.00 0.00 42.45 3.79
4640 10242 3.873952 GGACACATCCTTCAGTTATGCTC 59.126 47.826 0.00 0.00 42.45 4.26
4641 10243 3.525537 ACACATCCTTCAGTTATGCTCG 58.474 45.455 0.00 0.00 0.00 5.03
4642 10244 2.286294 CACATCCTTCAGTTATGCTCGC 59.714 50.000 0.00 0.00 0.00 5.03
4643 10245 1.869767 CATCCTTCAGTTATGCTCGCC 59.130 52.381 0.00 0.00 0.00 5.54
4644 10246 0.901827 TCCTTCAGTTATGCTCGCCA 59.098 50.000 0.00 0.00 0.00 5.69
4645 10247 1.009829 CCTTCAGTTATGCTCGCCAC 58.990 55.000 0.00 0.00 0.00 5.01
4646 10248 1.406069 CCTTCAGTTATGCTCGCCACT 60.406 52.381 0.00 0.00 0.00 4.00
4647 10249 1.662629 CTTCAGTTATGCTCGCCACTG 59.337 52.381 6.64 6.64 38.42 3.66
4648 10250 0.608130 TCAGTTATGCTCGCCACTGT 59.392 50.000 10.76 0.00 38.26 3.55
4649 10251 1.002366 CAGTTATGCTCGCCACTGTC 58.998 55.000 5.35 0.00 33.35 3.51
4650 10252 0.898320 AGTTATGCTCGCCACTGTCT 59.102 50.000 0.00 0.00 0.00 3.41
4651 10253 1.002366 GTTATGCTCGCCACTGTCTG 58.998 55.000 0.00 0.00 0.00 3.51
4652 10254 0.740868 TTATGCTCGCCACTGTCTGC 60.741 55.000 0.00 0.00 0.00 4.26
4653 10255 1.887344 TATGCTCGCCACTGTCTGCA 61.887 55.000 0.00 0.00 34.88 4.41
4654 10256 2.666190 GCTCGCCACTGTCTGCAA 60.666 61.111 0.00 0.00 0.00 4.08
4655 10257 2.959357 GCTCGCCACTGTCTGCAAC 61.959 63.158 0.00 0.00 0.00 4.17
4656 10258 1.301244 CTCGCCACTGTCTGCAACT 60.301 57.895 0.00 0.00 0.00 3.16
4657 10259 0.038251 CTCGCCACTGTCTGCAACTA 60.038 55.000 0.00 0.00 0.00 2.24
4658 10260 0.038251 TCGCCACTGTCTGCAACTAG 60.038 55.000 0.00 0.00 0.00 2.57
4659 10261 0.319900 CGCCACTGTCTGCAACTAGT 60.320 55.000 0.00 0.00 0.00 2.57
4660 10262 1.873903 CGCCACTGTCTGCAACTAGTT 60.874 52.381 1.12 1.12 0.00 2.24
4661 10263 2.609491 CGCCACTGTCTGCAACTAGTTA 60.609 50.000 8.04 0.00 0.00 2.24
4662 10264 3.399330 GCCACTGTCTGCAACTAGTTAA 58.601 45.455 8.04 0.00 0.00 2.01
4663 10265 3.813166 GCCACTGTCTGCAACTAGTTAAA 59.187 43.478 8.04 0.00 0.00 1.52
4664 10266 4.455877 GCCACTGTCTGCAACTAGTTAAAT 59.544 41.667 8.04 0.00 0.00 1.40
4665 10267 5.390991 GCCACTGTCTGCAACTAGTTAAATC 60.391 44.000 8.04 0.00 0.00 2.17
4666 10268 5.122396 CCACTGTCTGCAACTAGTTAAATCC 59.878 44.000 8.04 0.00 0.00 3.01
4667 10269 5.934625 CACTGTCTGCAACTAGTTAAATCCT 59.065 40.000 8.04 0.00 0.00 3.24
4668 10270 6.091441 CACTGTCTGCAACTAGTTAAATCCTC 59.909 42.308 8.04 0.00 0.00 3.71
4669 10271 6.014156 ACTGTCTGCAACTAGTTAAATCCTCT 60.014 38.462 8.04 0.00 0.00 3.69
4670 10272 6.769512 TGTCTGCAACTAGTTAAATCCTCTT 58.230 36.000 8.04 0.00 0.00 2.85
4671 10273 7.903145 TGTCTGCAACTAGTTAAATCCTCTTA 58.097 34.615 8.04 0.00 0.00 2.10
4672 10274 7.817962 TGTCTGCAACTAGTTAAATCCTCTTAC 59.182 37.037 8.04 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.188462 TGTCGCTGGTTATATTGGTCAAG 58.812 43.478 0.00 0.00 0.00 3.02
1 2 4.209307 TGTCGCTGGTTATATTGGTCAA 57.791 40.909 0.00 0.00 0.00 3.18
2 3 3.897141 TGTCGCTGGTTATATTGGTCA 57.103 42.857 0.00 0.00 0.00 4.02
3 4 6.874134 AGATATTGTCGCTGGTTATATTGGTC 59.126 38.462 0.00 0.00 0.00 4.02
4 5 6.769512 AGATATTGTCGCTGGTTATATTGGT 58.230 36.000 0.00 0.00 0.00 3.67
5 6 6.313905 GGAGATATTGTCGCTGGTTATATTGG 59.686 42.308 0.00 0.00 0.00 3.16
6 7 6.873605 TGGAGATATTGTCGCTGGTTATATTG 59.126 38.462 0.00 0.00 0.00 1.90
7 8 7.004555 TGGAGATATTGTCGCTGGTTATATT 57.995 36.000 0.00 0.00 0.00 1.28
8 9 6.605471 TGGAGATATTGTCGCTGGTTATAT 57.395 37.500 0.00 0.00 0.00 0.86
9 10 6.413783 TTGGAGATATTGTCGCTGGTTATA 57.586 37.500 0.00 0.00 0.00 0.98
10 11 4.955811 TGGAGATATTGTCGCTGGTTAT 57.044 40.909 0.00 0.00 0.00 1.89
11 12 4.746535 TTGGAGATATTGTCGCTGGTTA 57.253 40.909 0.00 0.00 0.00 2.85
12 13 3.627395 TTGGAGATATTGTCGCTGGTT 57.373 42.857 0.00 0.00 0.00 3.67
13 14 3.470709 CATTGGAGATATTGTCGCTGGT 58.529 45.455 0.00 0.00 0.00 4.00
14 15 2.225019 GCATTGGAGATATTGTCGCTGG 59.775 50.000 0.00 0.00 0.00 4.85
15 16 3.136763 AGCATTGGAGATATTGTCGCTG 58.863 45.455 0.00 0.00 0.00 5.18
16 17 3.181462 TGAGCATTGGAGATATTGTCGCT 60.181 43.478 0.00 0.00 0.00 4.93
17 18 3.133691 TGAGCATTGGAGATATTGTCGC 58.866 45.455 0.00 0.00 0.00 5.19
18 19 4.813161 ACTTGAGCATTGGAGATATTGTCG 59.187 41.667 0.00 0.00 0.00 4.35
19 20 6.690194 AACTTGAGCATTGGAGATATTGTC 57.310 37.500 0.00 0.00 0.00 3.18
20 21 6.261826 GCTAACTTGAGCATTGGAGATATTGT 59.738 38.462 0.00 0.00 42.36 2.71
21 22 6.666417 GCTAACTTGAGCATTGGAGATATTG 58.334 40.000 0.00 0.00 42.36 1.90
22 23 6.874288 GCTAACTTGAGCATTGGAGATATT 57.126 37.500 0.00 0.00 42.36 1.28
34 35 2.417933 CACTGACCATGCTAACTTGAGC 59.582 50.000 0.00 0.00 43.16 4.26
35 36 3.930336 TCACTGACCATGCTAACTTGAG 58.070 45.455 0.00 0.00 0.00 3.02
36 37 4.558226 ATCACTGACCATGCTAACTTGA 57.442 40.909 0.00 0.00 0.00 3.02
37 38 5.468072 GGATATCACTGACCATGCTAACTTG 59.532 44.000 4.83 0.00 0.00 3.16
38 39 5.130975 TGGATATCACTGACCATGCTAACTT 59.869 40.000 4.83 0.00 0.00 2.66
39 40 4.655649 TGGATATCACTGACCATGCTAACT 59.344 41.667 4.83 0.00 0.00 2.24
40 41 4.960938 TGGATATCACTGACCATGCTAAC 58.039 43.478 4.83 0.00 0.00 2.34
41 42 4.655649 ACTGGATATCACTGACCATGCTAA 59.344 41.667 4.83 0.00 0.00 3.09
42 43 4.226384 ACTGGATATCACTGACCATGCTA 58.774 43.478 4.83 0.00 0.00 3.49
43 44 3.044156 ACTGGATATCACTGACCATGCT 58.956 45.455 4.83 0.00 0.00 3.79
44 45 3.070734 AGACTGGATATCACTGACCATGC 59.929 47.826 4.83 0.00 0.00 4.06
45 46 4.502777 CCAGACTGGATATCACTGACCATG 60.503 50.000 17.22 0.00 40.96 3.66
46 47 3.645212 CCAGACTGGATATCACTGACCAT 59.355 47.826 17.22 0.00 40.96 3.55
47 48 3.033909 CCAGACTGGATATCACTGACCA 58.966 50.000 17.22 0.00 40.96 4.02
48 49 2.224161 GCCAGACTGGATATCACTGACC 60.224 54.545 26.25 0.00 40.96 4.02
49 50 2.697751 AGCCAGACTGGATATCACTGAC 59.302 50.000 26.25 2.99 40.96 3.51
50 51 2.961741 GAGCCAGACTGGATATCACTGA 59.038 50.000 26.25 0.00 35.51 3.41
51 52 2.964464 AGAGCCAGACTGGATATCACTG 59.036 50.000 26.25 7.98 35.51 3.66
52 53 2.964464 CAGAGCCAGACTGGATATCACT 59.036 50.000 26.25 11.15 35.51 3.41
53 54 2.547642 GCAGAGCCAGACTGGATATCAC 60.548 54.545 26.25 6.88 35.51 3.06
54 55 1.690893 GCAGAGCCAGACTGGATATCA 59.309 52.381 26.25 0.00 35.51 2.15
55 56 1.336702 CGCAGAGCCAGACTGGATATC 60.337 57.143 26.25 17.82 35.51 1.63
56 57 0.678395 CGCAGAGCCAGACTGGATAT 59.322 55.000 26.25 14.19 35.51 1.63
57 58 1.395045 CCGCAGAGCCAGACTGGATA 61.395 60.000 26.25 0.00 35.51 2.59
58 59 2.729479 CCGCAGAGCCAGACTGGAT 61.729 63.158 26.25 20.34 39.95 3.41
59 60 3.385384 CCGCAGAGCCAGACTGGA 61.385 66.667 26.25 0.00 40.96 3.86
74 75 4.749310 AGAACTGCTGGAGCGCCG 62.749 66.667 2.29 0.00 45.83 6.46
75 76 2.359230 AAGAACTGCTGGAGCGCC 60.359 61.111 2.29 0.00 45.83 6.53
76 77 2.394563 GGAAGAACTGCTGGAGCGC 61.395 63.158 0.00 0.00 45.83 5.92
77 78 0.321122 AAGGAAGAACTGCTGGAGCG 60.321 55.000 0.00 0.00 45.83 5.03
78 79 2.770164 TAAGGAAGAACTGCTGGAGC 57.230 50.000 0.00 0.00 42.50 4.70
79 80 3.006247 GCTTAAGGAAGAACTGCTGGAG 58.994 50.000 4.29 0.00 34.25 3.86
80 81 2.290323 GGCTTAAGGAAGAACTGCTGGA 60.290 50.000 4.29 0.00 34.25 3.86
81 82 2.087646 GGCTTAAGGAAGAACTGCTGG 58.912 52.381 4.29 0.00 34.25 4.85
82 83 2.087646 GGGCTTAAGGAAGAACTGCTG 58.912 52.381 4.29 0.00 34.25 4.41
83 84 1.705186 TGGGCTTAAGGAAGAACTGCT 59.295 47.619 4.29 0.00 34.25 4.24
84 85 2.200373 TGGGCTTAAGGAAGAACTGC 57.800 50.000 4.29 0.00 34.25 4.40
85 86 6.603201 TCAATAATGGGCTTAAGGAAGAACTG 59.397 38.462 4.29 0.00 34.25 3.16
86 87 6.731467 TCAATAATGGGCTTAAGGAAGAACT 58.269 36.000 4.29 0.00 34.25 3.01
87 88 7.255625 GGATCAATAATGGGCTTAAGGAAGAAC 60.256 40.741 4.29 0.00 34.25 3.01
88 89 6.777580 GGATCAATAATGGGCTTAAGGAAGAA 59.222 38.462 4.29 0.00 34.25 2.52
89 90 6.306987 GGATCAATAATGGGCTTAAGGAAGA 58.693 40.000 4.29 0.00 34.25 2.87
90 91 5.182001 CGGATCAATAATGGGCTTAAGGAAG 59.818 44.000 4.29 0.00 35.60 3.46
91 92 5.070001 CGGATCAATAATGGGCTTAAGGAA 58.930 41.667 4.29 0.00 0.00 3.36
92 93 4.651778 CGGATCAATAATGGGCTTAAGGA 58.348 43.478 4.29 0.00 0.00 3.36
93 94 3.191371 GCGGATCAATAATGGGCTTAAGG 59.809 47.826 4.29 0.00 0.00 2.69
94 95 3.191371 GGCGGATCAATAATGGGCTTAAG 59.809 47.826 0.00 0.00 0.00 1.85
95 96 3.153919 GGCGGATCAATAATGGGCTTAA 58.846 45.455 0.00 0.00 0.00 1.85
96 97 2.107378 TGGCGGATCAATAATGGGCTTA 59.893 45.455 0.00 0.00 0.00 3.09
97 98 1.133513 TGGCGGATCAATAATGGGCTT 60.134 47.619 0.00 0.00 0.00 4.35
98 99 0.478072 TGGCGGATCAATAATGGGCT 59.522 50.000 0.00 0.00 0.00 5.19
99 100 1.474077 GATGGCGGATCAATAATGGGC 59.526 52.381 0.00 0.00 0.00 5.36
100 101 2.794103 TGATGGCGGATCAATAATGGG 58.206 47.619 0.00 0.00 38.19 4.00
101 102 4.011698 TGATGATGGCGGATCAATAATGG 58.988 43.478 0.00 0.00 44.50 3.16
102 103 5.632244 TTGATGATGGCGGATCAATAATG 57.368 39.130 0.00 0.00 44.50 1.90
103 104 4.157289 GCTTGATGATGGCGGATCAATAAT 59.843 41.667 0.00 0.00 44.50 1.28
104 105 3.503363 GCTTGATGATGGCGGATCAATAA 59.497 43.478 0.00 0.68 44.50 1.40
105 106 3.076621 GCTTGATGATGGCGGATCAATA 58.923 45.455 0.00 0.00 44.50 1.90
106 107 1.884579 GCTTGATGATGGCGGATCAAT 59.115 47.619 0.00 0.00 44.50 2.57
107 108 1.134007 AGCTTGATGATGGCGGATCAA 60.134 47.619 0.00 0.00 44.50 2.57
108 109 0.471191 AGCTTGATGATGGCGGATCA 59.529 50.000 0.00 0.00 45.43 2.92
109 110 1.266175 CAAGCTTGATGATGGCGGATC 59.734 52.381 22.31 0.00 0.00 3.36
110 111 1.315690 CAAGCTTGATGATGGCGGAT 58.684 50.000 22.31 0.00 0.00 4.18
111 112 0.749091 CCAAGCTTGATGATGGCGGA 60.749 55.000 28.05 0.00 0.00 5.54
112 113 1.033746 ACCAAGCTTGATGATGGCGG 61.034 55.000 28.05 10.01 36.37 6.13
113 114 1.331756 GTACCAAGCTTGATGATGGCG 59.668 52.381 28.05 10.55 36.37 5.69
114 115 2.357009 CAGTACCAAGCTTGATGATGGC 59.643 50.000 28.05 9.91 36.37 4.40
115 116 2.947652 CCAGTACCAAGCTTGATGATGG 59.052 50.000 28.05 22.85 38.91 3.51
116 117 2.947652 CCCAGTACCAAGCTTGATGATG 59.052 50.000 28.05 18.58 0.00 3.07
117 118 2.684927 GCCCAGTACCAAGCTTGATGAT 60.685 50.000 28.05 12.16 0.00 2.45
118 119 1.340017 GCCCAGTACCAAGCTTGATGA 60.340 52.381 28.05 9.31 0.00 2.92
119 120 1.098050 GCCCAGTACCAAGCTTGATG 58.902 55.000 28.05 18.26 0.00 3.07
120 121 0.995024 AGCCCAGTACCAAGCTTGAT 59.005 50.000 28.05 14.33 29.27 2.57
121 122 0.771127 AAGCCCAGTACCAAGCTTGA 59.229 50.000 28.05 5.82 43.63 3.02
122 123 1.168714 GAAGCCCAGTACCAAGCTTG 58.831 55.000 19.93 19.93 45.20 4.01
124 125 0.036875 GTGAAGCCCAGTACCAAGCT 59.963 55.000 0.00 0.00 37.10 3.74
125 126 1.298859 CGTGAAGCCCAGTACCAAGC 61.299 60.000 0.00 0.00 0.00 4.01
126 127 0.034896 ACGTGAAGCCCAGTACCAAG 59.965 55.000 0.00 0.00 0.00 3.61
127 128 0.250124 CACGTGAAGCCCAGTACCAA 60.250 55.000 10.90 0.00 0.00 3.67
128 129 1.116536 TCACGTGAAGCCCAGTACCA 61.117 55.000 17.62 0.00 0.00 3.25
129 130 0.249398 ATCACGTGAAGCCCAGTACC 59.751 55.000 24.13 0.00 0.00 3.34
130 131 1.067142 TCATCACGTGAAGCCCAGTAC 60.067 52.381 24.13 0.00 32.78 2.73
131 132 1.262417 TCATCACGTGAAGCCCAGTA 58.738 50.000 24.13 0.00 32.78 2.74
132 133 0.615331 ATCATCACGTGAAGCCCAGT 59.385 50.000 24.13 0.11 40.97 4.00
133 134 1.293924 GATCATCACGTGAAGCCCAG 58.706 55.000 24.13 8.55 40.97 4.45
134 135 0.612744 TGATCATCACGTGAAGCCCA 59.387 50.000 24.13 15.36 40.97 5.36
135 136 1.959042 ATGATCATCACGTGAAGCCC 58.041 50.000 24.13 12.99 40.97 5.19
136 137 4.751600 TCATAATGATCATCACGTGAAGCC 59.248 41.667 24.13 13.34 40.97 4.35
137 138 5.611197 CGTCATAATGATCATCACGTGAAGC 60.611 44.000 24.13 10.65 40.97 3.86
138 139 5.460091 ACGTCATAATGATCATCACGTGAAG 59.540 40.000 24.13 19.02 40.97 3.02
139 140 5.348164 ACGTCATAATGATCATCACGTGAA 58.652 37.500 24.13 7.48 40.97 3.18
140 141 4.932146 ACGTCATAATGATCATCACGTGA 58.068 39.130 22.48 22.48 42.06 4.35
141 142 6.345803 GGTTACGTCATAATGATCATCACGTG 60.346 42.308 27.95 9.94 33.35 4.49
142 143 5.690409 GGTTACGTCATAATGATCATCACGT 59.310 40.000 25.50 25.50 35.47 4.49
143 144 5.118664 GGGTTACGTCATAATGATCATCACG 59.881 44.000 19.72 19.72 0.00 4.35
144 145 5.118664 CGGGTTACGTCATAATGATCATCAC 59.881 44.000 9.06 3.13 37.93 3.06
145 146 5.227152 CGGGTTACGTCATAATGATCATCA 58.773 41.667 9.06 0.00 37.93 3.07
146 147 4.625742 CCGGGTTACGTCATAATGATCATC 59.374 45.833 9.06 0.00 42.24 2.92
147 148 4.566004 CCGGGTTACGTCATAATGATCAT 58.434 43.478 1.18 1.18 42.24 2.45
148 149 3.800949 GCCGGGTTACGTCATAATGATCA 60.801 47.826 2.18 0.00 42.24 2.92
149 150 2.735134 GCCGGGTTACGTCATAATGATC 59.265 50.000 2.18 0.00 42.24 2.92
150 151 2.549349 GGCCGGGTTACGTCATAATGAT 60.549 50.000 2.18 0.00 42.24 2.45
151 152 1.202557 GGCCGGGTTACGTCATAATGA 60.203 52.381 2.18 0.00 42.24 2.57
152 153 1.223187 GGCCGGGTTACGTCATAATG 58.777 55.000 2.18 0.00 42.24 1.90
153 154 0.107268 GGGCCGGGTTACGTCATAAT 59.893 55.000 2.18 0.00 42.24 1.28
154 155 1.521616 GGGCCGGGTTACGTCATAA 59.478 57.895 2.18 0.00 42.24 1.90
155 156 2.433994 GGGGCCGGGTTACGTCATA 61.434 63.158 2.18 0.00 42.24 2.15
156 157 3.789290 GGGGCCGGGTTACGTCAT 61.789 66.667 2.18 0.00 42.24 3.06
158 159 4.152964 GAGGGGCCGGGTTACGTC 62.153 72.222 2.18 0.00 42.24 4.34
161 162 3.793888 CAGGAGGGGCCGGGTTAC 61.794 72.222 2.18 0.00 43.43 2.50
173 174 2.856039 TAGAGTCACCCGCCCAGGAG 62.856 65.000 0.00 0.00 45.00 3.69
174 175 2.449967 TTAGAGTCACCCGCCCAGGA 62.450 60.000 0.00 0.00 45.00 3.86
175 176 1.338136 ATTAGAGTCACCCGCCCAGG 61.338 60.000 0.00 0.00 40.63 4.45
176 177 0.179073 CATTAGAGTCACCCGCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
177 178 1.622607 CCATTAGAGTCACCCGCCCA 61.623 60.000 0.00 0.00 0.00 5.36
178 179 1.146263 CCATTAGAGTCACCCGCCC 59.854 63.158 0.00 0.00 0.00 6.13
179 180 0.252197 AACCATTAGAGTCACCCGCC 59.748 55.000 0.00 0.00 0.00 6.13
180 181 2.973694 TAACCATTAGAGTCACCCGC 57.026 50.000 0.00 0.00 0.00 6.13
181 182 5.480772 AGGATATAACCATTAGAGTCACCCG 59.519 44.000 1.42 0.00 0.00 5.28
182 183 6.497259 TGAGGATATAACCATTAGAGTCACCC 59.503 42.308 1.42 0.00 0.00 4.61
183 184 7.540474 TGAGGATATAACCATTAGAGTCACC 57.460 40.000 1.42 0.00 0.00 4.02
184 185 8.421784 TGTTGAGGATATAACCATTAGAGTCAC 58.578 37.037 1.42 0.00 0.00 3.67
185 186 8.547481 TGTTGAGGATATAACCATTAGAGTCA 57.453 34.615 1.42 0.00 0.00 3.41
186 187 7.600752 GCTGTTGAGGATATAACCATTAGAGTC 59.399 40.741 1.42 0.00 0.00 3.36
187 188 7.445945 GCTGTTGAGGATATAACCATTAGAGT 58.554 38.462 1.42 0.00 0.00 3.24
188 189 6.587990 CGCTGTTGAGGATATAACCATTAGAG 59.412 42.308 1.42 0.00 0.00 2.43
189 190 6.455647 CGCTGTTGAGGATATAACCATTAGA 58.544 40.000 1.42 0.00 0.00 2.10
190 191 5.639506 CCGCTGTTGAGGATATAACCATTAG 59.360 44.000 1.42 0.00 34.95 1.73
191 192 5.305902 TCCGCTGTTGAGGATATAACCATTA 59.694 40.000 1.42 0.00 37.24 1.90
192 193 4.102524 TCCGCTGTTGAGGATATAACCATT 59.897 41.667 1.42 0.00 37.24 3.16
193 194 3.646162 TCCGCTGTTGAGGATATAACCAT 59.354 43.478 1.42 0.00 37.24 3.55
194 195 3.035363 TCCGCTGTTGAGGATATAACCA 58.965 45.455 1.42 0.00 37.24 3.67
195 196 3.654414 CTCCGCTGTTGAGGATATAACC 58.346 50.000 0.00 0.00 41.25 2.85
196 197 3.060602 GCTCCGCTGTTGAGGATATAAC 58.939 50.000 0.00 0.00 41.25 1.89
197 198 2.965831 AGCTCCGCTGTTGAGGATATAA 59.034 45.455 0.00 0.00 41.25 0.98
198 199 2.598565 AGCTCCGCTGTTGAGGATATA 58.401 47.619 0.00 0.00 41.25 0.86
199 200 1.418334 AGCTCCGCTGTTGAGGATAT 58.582 50.000 0.00 0.00 41.25 1.63
200 201 2.067365 TAGCTCCGCTGTTGAGGATA 57.933 50.000 0.00 0.00 41.25 2.59
201 202 1.069823 CATAGCTCCGCTGTTGAGGAT 59.930 52.381 0.00 0.00 41.25 3.24
202 203 0.461548 CATAGCTCCGCTGTTGAGGA 59.538 55.000 0.00 0.00 40.10 3.71
203 204 0.176680 ACATAGCTCCGCTGTTGAGG 59.823 55.000 0.00 0.00 40.10 3.86
204 205 1.284657 CACATAGCTCCGCTGTTGAG 58.715 55.000 0.00 0.00 40.10 3.02
205 206 0.608130 ACACATAGCTCCGCTGTTGA 59.392 50.000 0.00 0.00 40.10 3.18
206 207 1.129251 CAACACATAGCTCCGCTGTTG 59.871 52.381 10.38 10.38 40.10 3.33
207 208 1.270839 ACAACACATAGCTCCGCTGTT 60.271 47.619 0.00 0.00 40.10 3.16
208 209 0.321671 ACAACACATAGCTCCGCTGT 59.678 50.000 0.00 0.00 40.10 4.40
209 210 1.002366 GACAACACATAGCTCCGCTG 58.998 55.000 0.00 0.00 40.10 5.18
210 211 0.108138 GGACAACACATAGCTCCGCT 60.108 55.000 0.00 0.00 43.41 5.52
211 212 1.090052 GGGACAACACATAGCTCCGC 61.090 60.000 0.00 0.00 0.00 5.54
212 213 0.462047 GGGGACAACACATAGCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
224 225 4.165372 GGGAGATTACATAACTGGGGACAA 59.835 45.833 0.00 0.00 42.06 3.18
226 227 3.714798 TGGGAGATTACATAACTGGGGAC 59.285 47.826 0.00 0.00 0.00 4.46
252 253 2.093181 ACTCAATAGCGGCCAACACATA 60.093 45.455 2.24 0.00 0.00 2.29
263 264 1.862008 GCTCCACTCGACTCAATAGCG 60.862 57.143 0.00 0.00 0.00 4.26
296 297 4.761227 GGGAAAATTGATTGCCAAACATGT 59.239 37.500 0.00 0.00 40.26 3.21
313 314 1.091537 GATTGCATCGTCCGGGAAAA 58.908 50.000 0.00 0.00 0.00 2.29
314 315 0.746563 GGATTGCATCGTCCGGGAAA 60.747 55.000 0.00 0.00 0.00 3.13
328 329 1.935873 CTATGGTCACAGCACGGATTG 59.064 52.381 0.00 0.00 0.00 2.67
345 346 3.231818 ACGAGGGACCGATCAAATCTAT 58.768 45.455 0.00 0.00 0.00 1.98
347 348 1.486211 ACGAGGGACCGATCAAATCT 58.514 50.000 0.00 0.00 0.00 2.40
399 403 4.589908 AGATCGCACCAAAGGTTTTCTAT 58.410 39.130 0.00 0.00 31.02 1.98
426 430 7.755822 GCGTTTGAGGAGTTCGATTATAGATAT 59.244 37.037 0.00 0.00 0.00 1.63
435 439 1.404315 GGAGCGTTTGAGGAGTTCGAT 60.404 52.381 0.00 0.00 0.00 3.59
469 473 1.143838 TCATTGACCGAGCCATCCG 59.856 57.895 0.00 0.00 0.00 4.18
517 521 2.822561 GAGGGATATGAGTGATGCGAGA 59.177 50.000 0.00 0.00 0.00 4.04
551 1630 5.533528 CGTGGGAATTTAGGGGTATTTTAGG 59.466 44.000 0.00 0.00 0.00 2.69
644 3919 3.084786 CTCCTTGATTCGCTCCCTTTTT 58.915 45.455 0.00 0.00 0.00 1.94
649 3924 1.946745 CTTCTCCTTGATTCGCTCCC 58.053 55.000 0.00 0.00 0.00 4.30
662 3938 2.437359 AGCGTGCCATGCTTCTCC 60.437 61.111 5.36 0.00 37.07 3.71
713 3989 1.152963 GTGAACTGCTGGTGGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
770 4046 1.885790 GCTGCCTGCCTCTTTCTCTTT 60.886 52.381 0.00 0.00 35.15 2.52
771 4047 0.322366 GCTGCCTGCCTCTTTCTCTT 60.322 55.000 0.00 0.00 35.15 2.85
772 4048 1.299321 GCTGCCTGCCTCTTTCTCT 59.701 57.895 0.00 0.00 35.15 3.10
773 4049 1.002868 TGCTGCCTGCCTCTTTCTC 60.003 57.895 0.00 0.00 42.00 2.87
774 4050 1.002379 CTGCTGCCTGCCTCTTTCT 60.002 57.895 0.00 0.00 42.00 2.52
775 4051 1.002868 TCTGCTGCCTGCCTCTTTC 60.003 57.895 0.00 0.00 42.00 2.62
846 4122 1.000486 GGAAAAGGAGGGAAGGGGC 60.000 63.158 0.00 0.00 0.00 5.80
940 4239 3.203412 CTCCCGCTACTCGTCGCT 61.203 66.667 0.00 0.00 36.19 4.93
944 4243 0.179051 CTCTACCTCCCGCTACTCGT 60.179 60.000 0.00 0.00 36.19 4.18
998 4297 2.668212 CGGCGTTGGTGTCCATGT 60.668 61.111 0.00 0.00 31.53 3.21
1096 4395 1.671901 GAGGAGTCGGAGAAGGGCTG 61.672 65.000 0.00 0.00 39.69 4.85
1097 4396 1.380650 GAGGAGTCGGAGAAGGGCT 60.381 63.158 0.00 0.00 39.69 5.19
1137 4436 0.108138 ATTGGCGACGAAGGAAGAGG 60.108 55.000 0.00 0.00 0.00 3.69
1138 4437 1.002366 CATTGGCGACGAAGGAAGAG 58.998 55.000 0.00 0.00 0.00 2.85
1141 4440 0.251916 ATCCATTGGCGACGAAGGAA 59.748 50.000 6.55 0.00 0.00 3.36
1146 4445 0.176910 TAAGCATCCATTGGCGACGA 59.823 50.000 0.00 0.00 34.54 4.20
1148 4447 0.304705 CGTAAGCATCCATTGGCGAC 59.695 55.000 0.00 0.00 34.54 5.19
1289 4588 3.064207 CTGAACGGGAGTCAAATCGAAA 58.936 45.455 0.00 0.00 46.69 3.46
1340 4639 2.149973 AGCAATCCTGGGGATCAAAC 57.850 50.000 0.00 0.00 42.27 2.93
1363 4662 3.138304 TCTAGCACAACATTGACACCAC 58.862 45.455 0.00 0.00 0.00 4.16
1445 4745 2.485124 CGGGTGTGGGTTAGTAAACACA 60.485 50.000 15.01 14.71 46.79 3.72
1985 5287 5.695851 AAATGAGGTCACAGCTTAACAAG 57.304 39.130 0.00 0.00 0.00 3.16
2154 5456 7.977818 TGATATGGAGCATAGTAACTGGAATT 58.022 34.615 0.00 0.00 29.42 2.17
2236 5538 4.561752 AGATAAAGCCTCCACCTCTGTAT 58.438 43.478 0.00 0.00 0.00 2.29
2275 5577 2.618045 CGGGTAGTTCCTGGCAAAGAAT 60.618 50.000 3.26 0.00 38.86 2.40
2293 5595 1.597027 GACAACCACACTCACCGGG 60.597 63.158 6.32 0.00 0.00 5.73
2305 5607 5.418840 ACACATATCCTTGGAATTGACAACC 59.581 40.000 8.55 0.00 0.00 3.77
2393 5695 6.110033 TGTGCTCAAACAGAAGTGTTAACTA 58.890 36.000 7.22 0.00 46.68 2.24
2441 5747 4.883006 TCATATTTAGCACTGCAGCATTGA 59.117 37.500 16.61 1.66 36.85 2.57
2467 5773 1.193874 GTAAGAGAAAACGGTGCCACG 59.806 52.381 0.00 0.00 40.31 4.94
2480 5786 5.706447 ACATGCCCTACATCTAGTAAGAGA 58.294 41.667 0.00 0.00 36.64 3.10
2489 5795 5.407049 AGGAATACTACATGCCCTACATCT 58.593 41.667 0.00 0.00 36.64 2.90
2601 5907 9.905713 ACTGGACTATTTCTGCATTTTATTCTA 57.094 29.630 0.00 0.00 0.00 2.10
2691 5997 8.978874 TTGCTTAGTGTGATGACCATATAAAT 57.021 30.769 0.00 0.00 0.00 1.40
2695 6001 7.886629 AAATTGCTTAGTGTGATGACCATAT 57.113 32.000 0.00 0.00 0.00 1.78
2719 6025 7.309377 CCTGAAAAGATTTCTGCACAGGAAATA 60.309 37.037 11.22 0.00 41.59 1.40
2754 6060 1.346395 ACGGTCACCATTCTGCTTACA 59.654 47.619 0.00 0.00 0.00 2.41
2920 6226 7.121759 AGTTCAACATGAAAATGGATACTCCAG 59.878 37.037 0.00 0.00 43.45 3.86
3422 6781 4.601406 TGTTCCAAACAGGCCCTAATAT 57.399 40.909 0.00 0.00 36.25 1.28
3457 6816 4.394729 TGGAACAGTGGTATTTCTTGGTC 58.605 43.478 0.00 0.00 0.00 4.02
3510 6869 7.489757 ACTCTTAAGTTCGAATATGTGAAGCTC 59.510 37.037 0.00 0.00 28.74 4.09
3518 6877 7.436673 CAGGAAGGACTCTTAAGTTCGAATATG 59.563 40.741 0.00 0.00 35.99 1.78
3698 7058 2.655364 CCTCGCGGCGACATGTAG 60.655 66.667 22.69 10.54 0.00 2.74
3935 7295 0.770008 CAAACTTTAACAGCGCACGC 59.230 50.000 11.47 6.99 42.33 5.34
3936 7296 1.268335 ACCAAACTTTAACAGCGCACG 60.268 47.619 11.47 1.85 0.00 5.34
3937 7297 2.485266 ACCAAACTTTAACAGCGCAC 57.515 45.000 11.47 0.00 0.00 5.34
3938 7298 4.839668 ATAACCAAACTTTAACAGCGCA 57.160 36.364 11.47 0.00 0.00 6.09
3939 7299 4.143410 GCAATAACCAAACTTTAACAGCGC 60.143 41.667 0.00 0.00 0.00 5.92
3940 7300 4.384547 GGCAATAACCAAACTTTAACAGCG 59.615 41.667 0.00 0.00 0.00 5.18
3979 7339 4.382147 GGACAGAGACAAGGACTACATTCC 60.382 50.000 0.00 0.00 35.66 3.01
3980 7340 4.464597 AGGACAGAGACAAGGACTACATTC 59.535 45.833 0.00 0.00 0.00 2.67
3981 7341 4.421131 AGGACAGAGACAAGGACTACATT 58.579 43.478 0.00 0.00 0.00 2.71
3982 7342 4.054359 AGGACAGAGACAAGGACTACAT 57.946 45.455 0.00 0.00 0.00 2.29
4143 9691 1.210478 AGCTAGGCCACATACCACAAG 59.790 52.381 5.01 0.00 0.00 3.16
4147 9695 1.271127 TGCAGCTAGGCCACATACCA 61.271 55.000 5.01 0.00 0.00 3.25
4171 9719 1.611474 GGACCGAGGGTGTAGGTTCC 61.611 65.000 0.00 0.00 38.57 3.62
4198 9746 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4203 9751 6.137227 CTAGTACACTAGTGTCAAAAACGC 57.863 41.667 31.11 12.20 43.74 4.84
4230 9778 4.023726 TGGTTGAACAGGTGGGTATAAC 57.976 45.455 0.00 0.00 0.00 1.89
4238 9786 7.936584 TCTTTAGTAATTTGGTTGAACAGGTG 58.063 34.615 0.00 0.00 0.00 4.00
4239 9787 8.528044 TTCTTTAGTAATTTGGTTGAACAGGT 57.472 30.769 0.00 0.00 0.00 4.00
4387 9943 1.271054 CCTGTTTGTCTCAGGTCTGGG 60.271 57.143 4.06 0.00 45.09 4.45
4408 9964 1.570857 TACATGGCTGTTGGAGGGGG 61.571 60.000 0.00 0.00 36.79 5.40
4410 9966 0.620556 AGTACATGGCTGTTGGAGGG 59.379 55.000 0.00 0.00 36.79 4.30
4411 9967 2.236146 TGTAGTACATGGCTGTTGGAGG 59.764 50.000 0.00 0.00 36.79 4.30
4412 9968 3.610040 TGTAGTACATGGCTGTTGGAG 57.390 47.619 0.00 0.00 36.79 3.86
4423 9979 7.552459 TGCTGTACATGTTACATGTAGTACAT 58.448 34.615 31.03 20.19 40.41 2.29
4425 9981 7.329962 TGTTGCTGTACATGTTACATGTAGTAC 59.670 37.037 31.03 24.13 35.43 2.73
4427 9983 6.227522 TGTTGCTGTACATGTTACATGTAGT 58.772 36.000 31.03 13.83 35.43 2.73
4428 9984 6.720012 TGTTGCTGTACATGTTACATGTAG 57.280 37.500 31.03 24.59 35.43 2.74
4429 9985 7.819900 TGTATGTTGCTGTACATGTTACATGTA 59.180 33.333 27.99 27.99 39.06 2.29
4430 9986 6.652900 TGTATGTTGCTGTACATGTTACATGT 59.347 34.615 29.94 29.94 39.06 3.21
4432 9988 7.626240 GCTTGTATGTTGCTGTACATGTTACAT 60.626 37.037 2.30 13.83 39.06 2.29
4434 9990 6.021596 GCTTGTATGTTGCTGTACATGTTAC 58.978 40.000 2.30 0.95 39.06 2.50
4437 9993 3.125146 CGCTTGTATGTTGCTGTACATGT 59.875 43.478 2.69 2.69 39.06 3.21
4438 9994 3.485711 CCGCTTGTATGTTGCTGTACATG 60.486 47.826 0.00 0.00 39.06 3.21
4439 9995 2.677836 CCGCTTGTATGTTGCTGTACAT 59.322 45.455 0.00 0.00 41.43 2.29
4506 10108 1.665679 CGACCGAAATAACAGCATGCT 59.334 47.619 16.30 16.30 42.53 3.79
4517 10119 2.967362 TCATACTTGCACGACCGAAAT 58.033 42.857 0.00 0.00 0.00 2.17
4560 10162 4.150451 CGACTGATTGCCCAATTGAAAAAC 59.850 41.667 7.12 0.00 0.00 2.43
4561 10163 4.038522 TCGACTGATTGCCCAATTGAAAAA 59.961 37.500 7.12 0.00 0.00 1.94
4580 10182 0.100682 TTGAGTAGAGCGCCATCGAC 59.899 55.000 2.29 2.30 38.10 4.20
4595 10197 3.376935 ATCCGGCCACTCGCTTGAG 62.377 63.158 2.24 0.00 45.64 3.02
4596 10198 3.371097 GATCCGGCCACTCGCTTGA 62.371 63.158 2.24 0.00 37.74 3.02
4597 10199 2.892425 GATCCGGCCACTCGCTTG 60.892 66.667 2.24 0.00 37.74 4.01
4598 10200 4.514577 CGATCCGGCCACTCGCTT 62.515 66.667 2.24 0.00 37.74 4.68
4608 10210 2.088674 GGATGTGTCCTCCGATCCGG 62.089 65.000 0.00 0.00 40.83 5.14
4609 10211 1.364171 GGATGTGTCCTCCGATCCG 59.636 63.158 0.00 0.00 41.60 4.18
4618 10220 3.873952 GAGCATAACTGAAGGATGTGTCC 59.126 47.826 0.00 0.00 45.45 4.02
4619 10221 3.553511 CGAGCATAACTGAAGGATGTGTC 59.446 47.826 0.00 0.00 0.00 3.67
4620 10222 3.525537 CGAGCATAACTGAAGGATGTGT 58.474 45.455 0.00 0.00 0.00 3.72
4621 10223 2.286294 GCGAGCATAACTGAAGGATGTG 59.714 50.000 0.00 0.00 0.00 3.21
4622 10224 2.555199 GCGAGCATAACTGAAGGATGT 58.445 47.619 0.00 0.00 0.00 3.06
4623 10225 1.869767 GGCGAGCATAACTGAAGGATG 59.130 52.381 0.00 0.00 0.00 3.51
4624 10226 1.486310 TGGCGAGCATAACTGAAGGAT 59.514 47.619 0.00 0.00 0.00 3.24
4625 10227 0.901827 TGGCGAGCATAACTGAAGGA 59.098 50.000 0.00 0.00 0.00 3.36
4626 10228 1.009829 GTGGCGAGCATAACTGAAGG 58.990 55.000 0.00 0.00 0.00 3.46
4627 10229 1.662629 CAGTGGCGAGCATAACTGAAG 59.337 52.381 15.22 0.00 42.09 3.02
4628 10230 1.001974 ACAGTGGCGAGCATAACTGAA 59.998 47.619 22.57 0.00 42.09 3.02
4629 10231 0.608130 ACAGTGGCGAGCATAACTGA 59.392 50.000 22.57 0.00 42.09 3.41
4630 10232 1.002366 GACAGTGGCGAGCATAACTG 58.998 55.000 17.38 17.38 44.46 3.16
4631 10233 0.898320 AGACAGTGGCGAGCATAACT 59.102 50.000 0.00 0.00 0.00 2.24
4632 10234 1.002366 CAGACAGTGGCGAGCATAAC 58.998 55.000 0.00 0.00 0.00 1.89
4633 10235 0.740868 GCAGACAGTGGCGAGCATAA 60.741 55.000 11.04 0.00 0.00 1.90
4634 10236 1.153568 GCAGACAGTGGCGAGCATA 60.154 57.895 11.04 0.00 0.00 3.14
4635 10237 2.435586 GCAGACAGTGGCGAGCAT 60.436 61.111 11.04 0.00 0.00 3.79
4636 10238 3.459148 TTGCAGACAGTGGCGAGCA 62.459 57.895 14.14 14.14 0.00 4.26
4637 10239 2.666190 TTGCAGACAGTGGCGAGC 60.666 61.111 9.25 9.25 0.00 5.03
4638 10240 0.038251 TAGTTGCAGACAGTGGCGAG 60.038 55.000 0.00 0.00 0.00 5.03
4639 10241 0.038251 CTAGTTGCAGACAGTGGCGA 60.038 55.000 0.00 0.00 0.00 5.54
4640 10242 0.319900 ACTAGTTGCAGACAGTGGCG 60.320 55.000 0.00 0.00 0.00 5.69
4641 10243 1.884235 AACTAGTTGCAGACAGTGGC 58.116 50.000 7.48 0.00 0.00 5.01
4642 10244 5.122396 GGATTTAACTAGTTGCAGACAGTGG 59.878 44.000 18.56 0.00 0.00 4.00
4643 10245 5.934625 AGGATTTAACTAGTTGCAGACAGTG 59.065 40.000 18.56 0.00 0.00 3.66
4644 10246 6.014156 AGAGGATTTAACTAGTTGCAGACAGT 60.014 38.462 18.56 0.00 0.00 3.55
4645 10247 6.402222 AGAGGATTTAACTAGTTGCAGACAG 58.598 40.000 18.56 0.00 0.00 3.51
4646 10248 6.360370 AGAGGATTTAACTAGTTGCAGACA 57.640 37.500 18.56 0.00 0.00 3.41
4647 10249 8.187354 GTAAGAGGATTTAACTAGTTGCAGAC 57.813 38.462 18.56 5.93 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.