Multiple sequence alignment - TraesCS6D01G223100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G223100 chr6D 100.000 4900 0 0 1 4900 315194815 315189916 0.000000e+00 9049
1 TraesCS6D01G223100 chr6D 88.739 2291 177 36 1981 4221 315246539 315248798 0.000000e+00 2726
2 TraesCS6D01G223100 chr6D 88.820 1136 67 23 641 1759 315245321 315246413 0.000000e+00 1339
3 TraesCS6D01G223100 chr6D 99.197 249 2 0 4652 4900 195182600 195182848 2.690000e-122 449
4 TraesCS6D01G223100 chr6D 82.784 273 45 2 1125 1396 315178596 315178325 4.900000e-60 243
5 TraesCS6D01G223100 chr6A 94.291 4099 154 40 339 4395 452267813 452263753 0.000000e+00 6200
6 TraesCS6D01G223100 chr6A 94.737 285 10 3 1 281 452269456 452269173 5.820000e-119 438
7 TraesCS6D01G223100 chr6A 96.250 80 3 0 267 346 452268210 452268131 1.110000e-26 132
8 TraesCS6D01G223100 chr6B 93.142 2683 127 21 1981 4639 512217099 512219748 0.000000e+00 3882
9 TraesCS6D01G223100 chr6B 91.812 1783 93 26 2 1759 512212973 512214727 0.000000e+00 2435
10 TraesCS6D01G223100 chr1B 79.014 1968 317 57 2013 3899 665797117 665795165 0.000000e+00 1258
11 TraesCS6D01G223100 chr1B 83.190 696 99 14 975 1656 665798133 665797442 5.390000e-174 621
12 TraesCS6D01G223100 chr1A 78.848 1962 317 62 2018 3899 574474263 574472320 0.000000e+00 1234
13 TraesCS6D01G223100 chr1A 82.656 640 89 16 1032 1656 574475215 574474583 9.270000e-152 547
14 TraesCS6D01G223100 chr1D 80.894 1476 237 31 2456 3899 478227614 478226152 0.000000e+00 1122
15 TraesCS6D01G223100 chr1D 83.165 695 90 20 975 1656 478229087 478228407 1.170000e-170 610
16 TraesCS6D01G223100 chr1D 99.197 249 2 0 4652 4900 433343937 433344185 2.690000e-122 449
17 TraesCS6D01G223100 chr1D 98.069 259 3 2 4644 4900 466487548 466487806 2.690000e-122 449
18 TraesCS6D01G223100 chr1D 97.318 261 6 1 4640 4900 484233411 484233670 4.500000e-120 442
19 TraesCS6D01G223100 chr7D 80.000 690 93 29 996 1656 531439320 531439993 7.430000e-128 468
20 TraesCS6D01G223100 chr7A 79.710 690 97 28 996 1656 611727988 611728663 4.470000e-125 459
21 TraesCS6D01G223100 chr7A 88.800 125 12 2 1853 1976 393325755 393325632 8.490000e-33 152
22 TraesCS6D01G223100 chrUn 98.805 251 3 0 4650 4900 370559354 370559604 9.680000e-122 448
23 TraesCS6D01G223100 chr4D 98.805 251 3 0 4650 4900 477376711 477376961 9.680000e-122 448
24 TraesCS6D01G223100 chr3D 97.338 263 5 2 4639 4900 528564739 528565000 3.480000e-121 446
25 TraesCS6D01G223100 chr3D 99.187 246 2 0 4653 4898 339967834 339967589 1.250000e-120 444
26 TraesCS6D01G223100 chr5D 98.394 249 4 0 4652 4900 177413115 177412867 5.820000e-119 438
27 TraesCS6D01G223100 chr5D 90.083 121 8 4 1858 1976 510960097 510960215 2.360000e-33 154
28 TraesCS6D01G223100 chr5D 87.313 134 13 4 1845 1977 421143640 421143770 3.060000e-32 150
29 TraesCS6D01G223100 chr5B 90.756 119 11 0 1858 1976 47572478 47572360 5.080000e-35 159
30 TraesCS6D01G223100 chr5B 86.364 132 14 3 1847 1976 476903734 476903605 1.840000e-29 141
31 TraesCS6D01G223100 chr7B 89.600 125 12 1 1847 1971 52367469 52367592 1.830000e-34 158
32 TraesCS6D01G223100 chr3A 88.800 125 12 2 1852 1976 693451027 693450905 8.490000e-33 152
33 TraesCS6D01G223100 chr2D 88.618 123 12 2 1848 1969 619596379 619596500 1.100000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G223100 chr6D 315189916 315194815 4899 True 9049.000000 9049 100.000000 1 4900 1 chr6D.!!$R2 4899
1 TraesCS6D01G223100 chr6D 315245321 315248798 3477 False 2032.500000 2726 88.779500 641 4221 2 chr6D.!!$F2 3580
2 TraesCS6D01G223100 chr6A 452263753 452269456 5703 True 2256.666667 6200 95.092667 1 4395 3 chr6A.!!$R1 4394
3 TraesCS6D01G223100 chr6B 512212973 512219748 6775 False 3158.500000 3882 92.477000 2 4639 2 chr6B.!!$F1 4637
4 TraesCS6D01G223100 chr1B 665795165 665798133 2968 True 939.500000 1258 81.102000 975 3899 2 chr1B.!!$R1 2924
5 TraesCS6D01G223100 chr1A 574472320 574475215 2895 True 890.500000 1234 80.752000 1032 3899 2 chr1A.!!$R1 2867
6 TraesCS6D01G223100 chr1D 478226152 478229087 2935 True 866.000000 1122 82.029500 975 3899 2 chr1D.!!$R1 2924
7 TraesCS6D01G223100 chr7D 531439320 531439993 673 False 468.000000 468 80.000000 996 1656 1 chr7D.!!$F1 660
8 TraesCS6D01G223100 chr7A 611727988 611728663 675 False 459.000000 459 79.710000 996 1656 1 chr7A.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 1834 0.391263 GAGTCAAAGGAACCCGCGAT 60.391 55.0 8.23 0.0 0.0 4.58 F
1684 3095 0.178973 CCCTTCCGTTTTCCCAACCT 60.179 55.0 0.00 0.0 0.0 3.50 F
1957 5761 0.527817 GATCCGTTGACCACCTAGCG 60.528 60.0 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 5742 0.527817 CGCTAGGTGGTCAACGGATC 60.528 60.000 0.0 0.0 0.0 3.36 R
3295 7210 0.322975 CAGCTGCTTGACTAGGGTGT 59.677 55.000 0.0 0.0 0.0 4.16 R
3906 7821 3.290948 TGGTCACCTAGCACACTTTTT 57.709 42.857 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 227 1.447643 GATATGAGGCACCGGCACT 59.552 57.895 0.00 0.00 43.71 4.40
218 236 1.668419 GCACCGGCACTTCTGATATT 58.332 50.000 0.00 0.00 40.72 1.28
300 1295 8.122952 GGAAGTCGTGATCCATTAATTACTTTG 58.877 37.037 0.00 0.00 35.71 2.77
421 1740 5.066634 TCTCTTTGAGTCCGACAGCTTATAG 59.933 44.000 0.40 0.00 0.00 1.31
515 1834 0.391263 GAGTCAAAGGAACCCGCGAT 60.391 55.000 8.23 0.00 0.00 4.58
516 1835 0.899720 AGTCAAAGGAACCCGCGATA 59.100 50.000 8.23 0.00 0.00 2.92
574 1899 4.098960 GGATCACCGAGGTACTGTAAATCA 59.901 45.833 0.00 0.00 41.55 2.57
646 1978 7.994425 ACACCATGAATAAAACAGTACATGA 57.006 32.000 0.00 0.00 37.77 3.07
964 2301 5.010112 TGTTTAATTTGGTTTCATGCTCCGA 59.990 36.000 0.00 0.00 0.00 4.55
1672 3083 1.903183 AGGTCTCTTTCTTCCCTTCCG 59.097 52.381 0.00 0.00 0.00 4.30
1677 3088 4.213694 GTCTCTTTCTTCCCTTCCGTTTTC 59.786 45.833 0.00 0.00 0.00 2.29
1682 3093 1.611977 CTTCCCTTCCGTTTTCCCAAC 59.388 52.381 0.00 0.00 0.00 3.77
1684 3095 0.178973 CCCTTCCGTTTTCCCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
1696 3194 1.902508 TCCCAACCTTTTTGTGTGCAA 59.097 42.857 0.00 0.00 0.00 4.08
1714 3212 7.221259 TGTGTGCAATGTGTTACGATATACTAC 59.779 37.037 0.00 0.00 0.00 2.73
1715 3213 7.434307 GTGTGCAATGTGTTACGATATACTACT 59.566 37.037 0.00 0.00 0.00 2.57
1717 3215 9.114965 GTGCAATGTGTTACGATATACTACTAG 57.885 37.037 0.00 0.00 0.00 2.57
1718 3216 8.843262 TGCAATGTGTTACGATATACTACTAGT 58.157 33.333 0.00 0.00 0.00 2.57
1770 3268 3.857052 CCGGATATATATGCACGGTTGT 58.143 45.455 13.86 0.00 36.78 3.32
1771 3269 5.001237 CCGGATATATATGCACGGTTGTA 57.999 43.478 13.86 0.00 36.78 2.41
1855 5652 2.611225 TTGCGCCTGGTTTTCATTTT 57.389 40.000 4.18 0.00 0.00 1.82
1856 5653 2.147436 TGCGCCTGGTTTTCATTTTC 57.853 45.000 4.18 0.00 0.00 2.29
1860 5657 3.559655 GCGCCTGGTTTTCATTTTCTTTT 59.440 39.130 0.00 0.00 0.00 2.27
1908 5712 7.160726 TCATCTTCAATCATGACAGTACAACA 58.839 34.615 0.00 0.00 34.61 3.33
1913 5717 7.509141 TCAATCATGACAGTACAACAAACAT 57.491 32.000 0.00 0.00 0.00 2.71
1916 5720 6.544038 TCATGACAGTACAACAAACATCAG 57.456 37.500 0.00 0.00 0.00 2.90
1955 5759 2.100197 TCAGATCCGTTGACCACCTAG 58.900 52.381 0.00 0.00 0.00 3.02
1957 5761 0.527817 GATCCGTTGACCACCTAGCG 60.528 60.000 0.00 0.00 0.00 4.26
1964 5769 1.136984 GACCACCTAGCGACGACTG 59.863 63.158 0.00 0.00 0.00 3.51
1990 5795 3.920412 GCAGTGAAATTCGGTTTTCATCC 59.080 43.478 14.06 5.65 44.80 3.51
2000 5805 1.275010 GGTTTTCATCCGTTTGGCCAT 59.725 47.619 6.09 0.00 34.14 4.40
2002 5807 3.398406 GTTTTCATCCGTTTGGCCATTT 58.602 40.909 6.09 0.00 34.14 2.32
2080 5889 1.065854 AGTGGGACTGCAACTGCTATC 60.066 52.381 2.95 0.70 42.66 2.08
2200 6023 4.134563 ACCGAGCAATTTGTAGTGAGTTT 58.865 39.130 0.00 0.00 0.00 2.66
2265 6099 2.098117 GCAAATCCGTGGATTCCTGAAG 59.902 50.000 14.24 3.12 43.26 3.02
2325 6159 2.039787 TACACCGGGGGAGATGCA 59.960 61.111 9.50 0.00 0.00 3.96
2445 6310 5.164620 TGGCATGTGATCTCTTAACTCAA 57.835 39.130 0.00 0.00 0.00 3.02
2886 6783 3.795488 GCAGGTTGACAACAAAGGTAAGC 60.795 47.826 19.58 7.50 37.77 3.09
2933 6845 4.768448 TGCATCACCAATCAAGAAATGAGT 59.232 37.500 0.00 0.00 42.53 3.41
2934 6846 5.244402 TGCATCACCAATCAAGAAATGAGTT 59.756 36.000 0.00 0.00 42.53 3.01
2935 6847 6.161381 GCATCACCAATCAAGAAATGAGTTT 58.839 36.000 0.00 0.00 42.53 2.66
2936 6848 6.647895 GCATCACCAATCAAGAAATGAGTTTT 59.352 34.615 0.00 0.00 42.53 2.43
3002 6917 4.079970 ACGATACACTCTCACTTGAGGAA 58.920 43.478 6.40 0.00 42.30 3.36
3173 7088 1.454479 CCCCATGCTTGGATTCGCT 60.454 57.895 19.85 0.00 46.92 4.93
3295 7210 0.828762 ATTGCAGGCCTTGTTGCTGA 60.829 50.000 15.02 5.28 40.87 4.26
3344 7259 2.617308 CTCAGCCGATTTGATGCAAGAT 59.383 45.455 0.00 0.00 0.00 2.40
3906 7821 0.184933 ACCTGCTGCCTAAACAACCA 59.815 50.000 0.00 0.00 0.00 3.67
3973 7888 4.227300 TGTGCCTCCCTGAACTATATTTGT 59.773 41.667 0.00 0.00 0.00 2.83
4025 7941 4.085357 ACTCGAGCTGTCTAGAGATGAT 57.915 45.455 13.61 0.00 42.47 2.45
4026 7942 5.222079 ACTCGAGCTGTCTAGAGATGATA 57.778 43.478 13.61 0.00 42.47 2.15
4027 7943 5.237815 ACTCGAGCTGTCTAGAGATGATAG 58.762 45.833 13.61 0.00 42.47 2.08
4028 7944 5.011635 ACTCGAGCTGTCTAGAGATGATAGA 59.988 44.000 13.61 0.00 42.47 1.98
4029 7945 5.478407 TCGAGCTGTCTAGAGATGATAGAG 58.522 45.833 0.00 0.00 30.04 2.43
4058 7979 9.176181 GTGTGTGGTTTTACAATATTACAACTG 57.824 33.333 0.00 0.00 31.36 3.16
4061 7982 9.303116 TGTGGTTTTACAATATTACAACTGGAT 57.697 29.630 0.00 0.00 0.00 3.41
4126 8056 2.014128 CGGGTGTGCCTATTAAGTTGG 58.986 52.381 0.00 0.00 34.45 3.77
4165 8095 5.826586 TGTACTTTGTGCTTGTACATTTGG 58.173 37.500 0.00 0.00 40.74 3.28
4206 8141 6.659745 AGTATATGACCCGCACAAGTATAA 57.340 37.500 0.00 0.00 0.00 0.98
4213 8148 3.945285 ACCCGCACAAGTATAAATCTTGG 59.055 43.478 9.82 1.79 44.29 3.61
4232 8167 7.517614 TCTTGGTTTTACTTATTGATGCACA 57.482 32.000 0.00 0.00 0.00 4.57
4262 8197 7.275183 ACAGCTAAGCATGTAAATGATACTCA 58.725 34.615 0.00 0.00 0.00 3.41
4279 8214 3.679389 ACTCATTCAGATTTCGCCTTGT 58.321 40.909 0.00 0.00 0.00 3.16
4280 8215 4.074970 ACTCATTCAGATTTCGCCTTGTT 58.925 39.130 0.00 0.00 0.00 2.83
4283 8218 5.000591 TCATTCAGATTTCGCCTTGTTGTA 58.999 37.500 0.00 0.00 0.00 2.41
4289 8224 1.886886 TTCGCCTTGTTGTAACTCCC 58.113 50.000 0.00 0.00 0.00 4.30
4290 8225 0.759959 TCGCCTTGTTGTAACTCCCA 59.240 50.000 0.00 0.00 0.00 4.37
4294 8229 2.938838 CCTTGTTGTAACTCCCAACCA 58.061 47.619 0.00 0.00 41.13 3.67
4329 8264 1.673993 CCTACACGCCATTGCCACA 60.674 57.895 0.00 0.00 0.00 4.17
4333 8268 3.049674 ACGCCATTGCCACAGTCG 61.050 61.111 0.00 0.00 0.00 4.18
4335 8270 3.364441 GCCATTGCCACAGTCGCA 61.364 61.111 0.00 0.00 0.00 5.10
4382 8317 1.203025 ACGACTACAAGAGGAGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
4391 8326 0.178970 GAGGAGTGGGTATCCGCCTA 60.179 60.000 0.72 0.00 44.41 3.93
4402 8348 4.024670 GGTATCCGCCTATCTCCTTATGT 58.975 47.826 0.00 0.00 0.00 2.29
4409 8355 5.357032 CCGCCTATCTCCTTATGTTTTTGTT 59.643 40.000 0.00 0.00 0.00 2.83
4432 8378 2.417379 CCTAGTGACATCGACAAGGTGG 60.417 54.545 0.00 0.00 34.56 4.61
4433 8379 0.320771 AGTGACATCGACAAGGTGGC 60.321 55.000 0.00 0.00 40.23 5.01
4434 8380 4.693532 GACATCGACAAGGTGGCA 57.306 55.556 0.00 0.00 39.37 4.92
4435 8381 2.927004 GACATCGACAAGGTGGCAA 58.073 52.632 0.00 0.00 39.37 4.52
4436 8382 0.517316 GACATCGACAAGGTGGCAAC 59.483 55.000 0.00 0.00 39.37 4.17
4438 8384 0.948623 CATCGACAAGGTGGCAACGA 60.949 55.000 0.00 0.00 42.51 3.85
4448 8394 1.958715 TGGCAACGACGATGGTGTG 60.959 57.895 0.00 0.00 42.51 3.82
4459 8405 4.250464 GACGATGGTGTGTTGGAATAAGA 58.750 43.478 0.00 0.00 0.00 2.10
4472 8418 4.753186 TGGAATAAGATCTCTCCCTACCC 58.247 47.826 13.29 2.06 0.00 3.69
4474 8420 4.450861 GGAATAAGATCTCTCCCTACCCCA 60.451 50.000 0.00 0.00 0.00 4.96
4479 8425 2.686106 TCTCCCTACCCCAACGGC 60.686 66.667 0.00 0.00 33.26 5.68
4480 8426 2.687566 CTCCCTACCCCAACGGCT 60.688 66.667 0.00 0.00 33.26 5.52
4483 8429 1.076014 CCCTACCCCAACGGCTTTT 59.924 57.895 0.00 0.00 33.26 2.27
4489 8435 0.897863 CCCCAACGGCTTTTGATCCA 60.898 55.000 0.00 0.00 0.00 3.41
4495 8441 0.109781 CGGCTTTTGATCCAACACCG 60.110 55.000 5.37 5.37 30.89 4.94
4504 8454 1.209504 GATCCAACACCGATGAAGGGA 59.790 52.381 0.00 0.00 35.02 4.20
4514 8464 3.226777 CCGATGAAGGGACTATGAGAGT 58.773 50.000 0.00 0.00 38.49 3.24
4521 8471 4.543590 AGGGACTATGAGAGTTTGTGTG 57.456 45.455 0.00 0.00 39.06 3.82
4524 8474 3.003480 GACTATGAGAGTTTGTGTGCCC 58.997 50.000 0.00 0.00 39.06 5.36
4528 8478 1.211703 TGAGAGTTTGTGTGCCCAGAA 59.788 47.619 0.00 0.00 0.00 3.02
4532 8482 2.362077 GAGTTTGTGTGCCCAGAAATGT 59.638 45.455 0.00 0.00 36.39 2.71
4540 8490 3.153919 GTGCCCAGAAATGTTGGTTCTA 58.846 45.455 0.00 0.00 33.53 2.10
4555 8505 6.889177 TGTTGGTTCTATTCATATCTTGGCAA 59.111 34.615 0.00 0.00 0.00 4.52
4563 8513 4.987408 TCATATCTTGGCAATTGGTGTG 57.013 40.909 7.72 0.00 0.00 3.82
4565 8515 4.398988 TCATATCTTGGCAATTGGTGTGTC 59.601 41.667 7.72 0.00 0.00 3.67
4572 8522 3.181477 TGGCAATTGGTGTGTCTTTTGAG 60.181 43.478 7.72 0.00 0.00 3.02
4597 8547 6.229936 AGAACTATTGGTTGGCTATTCGTA 57.770 37.500 0.00 0.00 38.41 3.43
4601 8551 6.769512 ACTATTGGTTGGCTATTCGTATGAT 58.230 36.000 0.00 0.00 0.00 2.45
4613 8563 7.359598 GGCTATTCGTATGATGACTTTGACATC 60.360 40.741 0.00 0.00 42.81 3.06
4621 8571 4.931601 TGATGACTTTGACATCTTCTTCCG 59.068 41.667 0.00 0.00 42.89 4.30
4626 8576 4.273480 ACTTTGACATCTTCTTCCGTGTTG 59.727 41.667 0.00 0.00 0.00 3.33
4631 8581 1.860676 TCTTCTTCCGTGTTGTTCCG 58.139 50.000 0.00 0.00 0.00 4.30
4632 8582 0.234884 CTTCTTCCGTGTTGTTCCGC 59.765 55.000 0.00 0.00 0.00 5.54
4639 8589 4.555709 TGTTGTTCCGCGGCAGGT 62.556 61.111 23.51 0.00 0.00 4.00
4640 8590 4.025401 GTTGTTCCGCGGCAGGTG 62.025 66.667 23.51 0.00 0.00 4.00
4641 8591 4.243008 TTGTTCCGCGGCAGGTGA 62.243 61.111 23.51 0.00 0.00 4.02
4642 8592 4.680237 TGTTCCGCGGCAGGTGAG 62.680 66.667 23.51 0.00 0.00 3.51
4648 8598 3.075005 GCGGCAGGTGAGGGAGTA 61.075 66.667 0.00 0.00 0.00 2.59
4649 8599 2.893398 CGGCAGGTGAGGGAGTAC 59.107 66.667 0.00 0.00 0.00 2.73
4650 8600 1.682684 CGGCAGGTGAGGGAGTACT 60.683 63.158 0.00 0.00 0.00 2.73
4651 8601 1.901085 GGCAGGTGAGGGAGTACTG 59.099 63.158 0.00 0.00 0.00 2.74
4652 8602 1.617947 GGCAGGTGAGGGAGTACTGG 61.618 65.000 0.00 0.00 0.00 4.00
4653 8603 0.905337 GCAGGTGAGGGAGTACTGGT 60.905 60.000 0.00 0.00 0.00 4.00
4654 8604 0.898320 CAGGTGAGGGAGTACTGGTG 59.102 60.000 0.00 0.00 0.00 4.17
4655 8605 0.784495 AGGTGAGGGAGTACTGGTGA 59.216 55.000 0.00 0.00 0.00 4.02
4656 8606 1.149288 AGGTGAGGGAGTACTGGTGAA 59.851 52.381 0.00 0.00 0.00 3.18
4657 8607 1.975680 GGTGAGGGAGTACTGGTGAAA 59.024 52.381 0.00 0.00 0.00 2.69
4658 8608 2.028020 GGTGAGGGAGTACTGGTGAAAG 60.028 54.545 0.00 0.00 0.00 2.62
4659 8609 2.897969 GTGAGGGAGTACTGGTGAAAGA 59.102 50.000 0.00 0.00 0.00 2.52
4660 8610 3.323979 GTGAGGGAGTACTGGTGAAAGAA 59.676 47.826 0.00 0.00 0.00 2.52
4661 8611 3.323979 TGAGGGAGTACTGGTGAAAGAAC 59.676 47.826 0.00 0.00 0.00 3.01
4662 8612 3.314693 AGGGAGTACTGGTGAAAGAACA 58.685 45.455 0.00 0.00 0.00 3.18
4663 8613 3.910627 AGGGAGTACTGGTGAAAGAACAT 59.089 43.478 0.00 0.00 0.00 2.71
4664 8614 4.003648 GGGAGTACTGGTGAAAGAACATG 58.996 47.826 0.00 0.00 0.00 3.21
4665 8615 3.437049 GGAGTACTGGTGAAAGAACATGC 59.563 47.826 0.00 0.00 0.00 4.06
4666 8616 3.067106 AGTACTGGTGAAAGAACATGCG 58.933 45.455 0.00 0.00 0.00 4.73
4667 8617 1.238439 ACTGGTGAAAGAACATGCGG 58.762 50.000 0.00 0.00 0.00 5.69
4668 8618 1.238439 CTGGTGAAAGAACATGCGGT 58.762 50.000 0.00 0.00 0.00 5.68
4669 8619 0.950836 TGGTGAAAGAACATGCGGTG 59.049 50.000 0.00 0.00 0.00 4.94
4670 8620 0.387239 GGTGAAAGAACATGCGGTGC 60.387 55.000 0.00 0.00 0.00 5.01
4671 8621 0.387239 GTGAAAGAACATGCGGTGCC 60.387 55.000 0.00 0.00 0.00 5.01
4672 8622 1.212751 GAAAGAACATGCGGTGCCC 59.787 57.895 0.00 0.00 0.00 5.36
4673 8623 2.212900 GAAAGAACATGCGGTGCCCC 62.213 60.000 0.00 0.00 0.00 5.80
4674 8624 4.740822 AGAACATGCGGTGCCCCC 62.741 66.667 0.00 0.00 0.00 5.40
4676 8626 4.380945 AACATGCGGTGCCCCCAT 62.381 61.111 0.00 0.00 0.00 4.00
4679 8629 4.380945 ATGCGGTGCCCCCATGTT 62.381 61.111 0.00 0.00 0.00 2.71
4680 8630 3.903281 ATGCGGTGCCCCCATGTTT 62.903 57.895 0.00 0.00 0.00 2.83
4681 8631 4.067913 GCGGTGCCCCCATGTTTG 62.068 66.667 0.00 0.00 0.00 2.93
4682 8632 3.381136 CGGTGCCCCCATGTTTGG 61.381 66.667 0.00 0.00 43.23 3.28
4683 8633 2.203773 GGTGCCCCCATGTTTGGT 60.204 61.111 0.00 0.00 41.91 3.67
4684 8634 1.841103 GGTGCCCCCATGTTTGGTT 60.841 57.895 0.00 0.00 41.91 3.67
4685 8635 1.414866 GGTGCCCCCATGTTTGGTTT 61.415 55.000 0.00 0.00 41.91 3.27
4686 8636 0.472044 GTGCCCCCATGTTTGGTTTT 59.528 50.000 0.00 0.00 41.91 2.43
4687 8637 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
4688 8638 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
4689 8639 1.135960 CCCCCATGTTTGGTTTTGGT 58.864 50.000 0.00 0.00 41.91 3.67
4690 8640 2.330216 CCCCCATGTTTGGTTTTGGTA 58.670 47.619 0.00 0.00 41.91 3.25
4691 8641 2.706190 CCCCCATGTTTGGTTTTGGTAA 59.294 45.455 0.00 0.00 41.91 2.85
4692 8642 3.329225 CCCCCATGTTTGGTTTTGGTAAT 59.671 43.478 0.00 0.00 41.91 1.89
4693 8643 4.202514 CCCCCATGTTTGGTTTTGGTAATT 60.203 41.667 0.00 0.00 41.91 1.40
4694 8644 4.759183 CCCCATGTTTGGTTTTGGTAATTG 59.241 41.667 0.00 0.00 41.91 2.32
4695 8645 5.455326 CCCCATGTTTGGTTTTGGTAATTGA 60.455 40.000 0.00 0.00 41.91 2.57
4696 8646 6.237154 CCCATGTTTGGTTTTGGTAATTGAT 58.763 36.000 0.00 0.00 41.91 2.57
4697 8647 6.149142 CCCATGTTTGGTTTTGGTAATTGATG 59.851 38.462 0.00 0.00 41.91 3.07
4698 8648 6.933521 CCATGTTTGGTTTTGGTAATTGATGA 59.066 34.615 0.00 0.00 38.30 2.92
4699 8649 7.095271 CCATGTTTGGTTTTGGTAATTGATGAC 60.095 37.037 0.00 0.00 38.30 3.06
4700 8650 6.878317 TGTTTGGTTTTGGTAATTGATGACA 58.122 32.000 0.00 0.00 0.00 3.58
4701 8651 7.331026 TGTTTGGTTTTGGTAATTGATGACAA 58.669 30.769 0.00 0.00 40.42 3.18
4702 8652 7.989741 TGTTTGGTTTTGGTAATTGATGACAAT 59.010 29.630 0.00 0.00 46.99 2.71
4703 8653 8.495148 GTTTGGTTTTGGTAATTGATGACAATC 58.505 33.333 0.00 0.00 44.67 2.67
4704 8654 7.537596 TGGTTTTGGTAATTGATGACAATCT 57.462 32.000 0.00 0.00 44.67 2.40
4705 8655 7.601856 TGGTTTTGGTAATTGATGACAATCTC 58.398 34.615 0.00 0.00 44.67 2.75
4706 8656 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
4707 8657 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
4710 8660 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
4711 8661 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
4712 8662 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
4713 8663 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
4717 8667 9.722184 ATTGATGACAATCTCTATGGACTAATG 57.278 33.333 0.00 0.00 42.20 1.90
4718 8668 7.674120 TGATGACAATCTCTATGGACTAATGG 58.326 38.462 0.00 0.00 33.61 3.16
4719 8669 7.290948 TGATGACAATCTCTATGGACTAATGGT 59.709 37.037 0.00 0.00 33.61 3.55
4720 8670 7.437713 TGACAATCTCTATGGACTAATGGTT 57.562 36.000 0.00 0.00 0.00 3.67
4721 8671 7.275183 TGACAATCTCTATGGACTAATGGTTG 58.725 38.462 0.00 0.00 0.00 3.77
4722 8672 6.058183 ACAATCTCTATGGACTAATGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
4723 8673 4.689612 TCTCTATGGACTAATGGTTGCC 57.310 45.455 0.00 0.00 0.00 4.52
4724 8674 4.298626 TCTCTATGGACTAATGGTTGCCT 58.701 43.478 0.00 0.00 0.00 4.75
4725 8675 4.721776 TCTCTATGGACTAATGGTTGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
4726 8676 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
4727 8677 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
4728 8678 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
4729 8679 2.375174 TGGACTAATGGTTGCCTTGAGT 59.625 45.455 0.00 0.00 0.00 3.41
4730 8680 3.181434 TGGACTAATGGTTGCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
4731 8681 4.042311 TGGACTAATGGTTGCCTTGAGTTA 59.958 41.667 0.00 0.00 0.00 2.24
4732 8682 5.193679 GGACTAATGGTTGCCTTGAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
4733 8683 6.069905 TGGACTAATGGTTGCCTTGAGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
4734 8684 6.998673 GGACTAATGGTTGCCTTGAGTTATAT 59.001 38.462 0.00 0.00 0.00 0.86
4735 8685 7.502561 GGACTAATGGTTGCCTTGAGTTATATT 59.497 37.037 0.00 0.00 0.00 1.28
4736 8686 8.823220 ACTAATGGTTGCCTTGAGTTATATTT 57.177 30.769 0.00 0.00 0.00 1.40
4737 8687 8.686334 ACTAATGGTTGCCTTGAGTTATATTTG 58.314 33.333 0.00 0.00 0.00 2.32
4738 8688 7.716799 AATGGTTGCCTTGAGTTATATTTGA 57.283 32.000 0.00 0.00 0.00 2.69
4739 8689 7.716799 ATGGTTGCCTTGAGTTATATTTGAA 57.283 32.000 0.00 0.00 0.00 2.69
4740 8690 7.156876 TGGTTGCCTTGAGTTATATTTGAAG 57.843 36.000 0.00 0.00 0.00 3.02
4741 8691 6.152661 TGGTTGCCTTGAGTTATATTTGAAGG 59.847 38.462 0.00 0.00 34.30 3.46
4742 8692 6.377146 GGTTGCCTTGAGTTATATTTGAAGGA 59.623 38.462 0.00 0.00 33.17 3.36
4743 8693 7.068716 GGTTGCCTTGAGTTATATTTGAAGGAT 59.931 37.037 0.00 0.00 33.17 3.24
4744 8694 8.470002 GTTGCCTTGAGTTATATTTGAAGGATT 58.530 33.333 0.00 0.00 33.17 3.01
4745 8695 8.593945 TGCCTTGAGTTATATTTGAAGGATTT 57.406 30.769 0.00 0.00 33.17 2.17
4746 8696 8.469200 TGCCTTGAGTTATATTTGAAGGATTTG 58.531 33.333 0.00 0.00 33.17 2.32
4747 8697 8.470002 GCCTTGAGTTATATTTGAAGGATTTGT 58.530 33.333 0.00 0.00 33.17 2.83
4750 8700 9.527157 TTGAGTTATATTTGAAGGATTTGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
4751 8701 8.956426 TGAGTTATATTTGAAGGATTTGTCCAC 58.044 33.333 0.00 0.00 0.00 4.02
4752 8702 8.877864 AGTTATATTTGAAGGATTTGTCCACA 57.122 30.769 0.00 0.00 0.00 4.17
4753 8703 8.960591 AGTTATATTTGAAGGATTTGTCCACAG 58.039 33.333 0.00 0.00 0.00 3.66
4754 8704 6.780457 ATATTTGAAGGATTTGTCCACAGG 57.220 37.500 0.00 0.00 0.00 4.00
4755 8705 1.909700 TGAAGGATTTGTCCACAGGC 58.090 50.000 0.00 0.00 0.00 4.85
4756 8706 1.144708 TGAAGGATTTGTCCACAGGCA 59.855 47.619 0.00 0.00 0.00 4.75
4757 8707 2.225091 TGAAGGATTTGTCCACAGGCAT 60.225 45.455 0.00 0.00 0.00 4.40
4758 8708 2.610438 AGGATTTGTCCACAGGCATT 57.390 45.000 0.00 0.00 0.00 3.56
4759 8709 2.893424 AGGATTTGTCCACAGGCATTT 58.107 42.857 0.00 0.00 0.00 2.32
4760 8710 2.827921 AGGATTTGTCCACAGGCATTTC 59.172 45.455 0.00 0.00 0.00 2.17
4761 8711 2.827921 GGATTTGTCCACAGGCATTTCT 59.172 45.455 0.00 0.00 0.00 2.52
4762 8712 3.259123 GGATTTGTCCACAGGCATTTCTT 59.741 43.478 0.00 0.00 0.00 2.52
4763 8713 3.731652 TTTGTCCACAGGCATTTCTTG 57.268 42.857 0.00 0.00 0.00 3.02
4764 8714 2.655090 TGTCCACAGGCATTTCTTGA 57.345 45.000 0.00 0.00 0.00 3.02
4765 8715 2.942804 TGTCCACAGGCATTTCTTGAA 58.057 42.857 0.00 0.00 0.00 2.69
4766 8716 3.499338 TGTCCACAGGCATTTCTTGAAT 58.501 40.909 0.00 0.00 0.00 2.57
4767 8717 3.896888 TGTCCACAGGCATTTCTTGAATT 59.103 39.130 0.00 0.00 0.00 2.17
4768 8718 4.344679 TGTCCACAGGCATTTCTTGAATTT 59.655 37.500 0.00 0.00 0.00 1.82
4769 8719 4.925646 GTCCACAGGCATTTCTTGAATTTC 59.074 41.667 0.00 0.00 0.00 2.17
4770 8720 4.588106 TCCACAGGCATTTCTTGAATTTCA 59.412 37.500 0.00 0.00 0.00 2.69
4771 8721 5.246656 TCCACAGGCATTTCTTGAATTTCAT 59.753 36.000 0.00 0.00 0.00 2.57
4772 8722 5.350365 CCACAGGCATTTCTTGAATTTCATG 59.650 40.000 0.00 3.00 0.00 3.07
4773 8723 5.929992 CACAGGCATTTCTTGAATTTCATGT 59.070 36.000 10.92 2.44 0.00 3.21
4774 8724 5.929992 ACAGGCATTTCTTGAATTTCATGTG 59.070 36.000 10.92 5.13 28.12 3.21
4775 8725 5.929992 CAGGCATTTCTTGAATTTCATGTGT 59.070 36.000 10.92 0.00 0.00 3.72
4776 8726 6.425721 CAGGCATTTCTTGAATTTCATGTGTT 59.574 34.615 10.92 0.00 0.00 3.32
4777 8727 6.425721 AGGCATTTCTTGAATTTCATGTGTTG 59.574 34.615 10.92 8.47 0.00 3.33
4778 8728 6.347888 GGCATTTCTTGAATTTCATGTGTTGG 60.348 38.462 10.92 2.59 0.00 3.77
4779 8729 6.203338 GCATTTCTTGAATTTCATGTGTTGGT 59.797 34.615 10.92 0.00 0.00 3.67
4780 8730 7.254863 GCATTTCTTGAATTTCATGTGTTGGTT 60.255 33.333 10.92 0.00 0.00 3.67
4781 8731 8.614346 CATTTCTTGAATTTCATGTGTTGGTTT 58.386 29.630 10.92 0.00 0.00 3.27
4782 8732 7.769272 TTCTTGAATTTCATGTGTTGGTTTC 57.231 32.000 10.92 0.00 0.00 2.78
4783 8733 6.871844 TCTTGAATTTCATGTGTTGGTTTCA 58.128 32.000 10.92 0.00 0.00 2.69
4784 8734 7.326454 TCTTGAATTTCATGTGTTGGTTTCAA 58.674 30.769 10.92 0.00 32.30 2.69
4785 8735 7.492020 TCTTGAATTTCATGTGTTGGTTTCAAG 59.508 33.333 13.23 13.23 41.32 3.02
4786 8736 6.047870 TGAATTTCATGTGTTGGTTTCAAGG 58.952 36.000 0.00 0.00 32.92 3.61
4787 8737 5.867903 ATTTCATGTGTTGGTTTCAAGGA 57.132 34.783 0.00 0.00 32.92 3.36
4788 8738 4.916983 TTCATGTGTTGGTTTCAAGGAG 57.083 40.909 0.00 0.00 32.92 3.69
4789 8739 3.897239 TCATGTGTTGGTTTCAAGGAGT 58.103 40.909 0.00 0.00 32.92 3.85
4790 8740 4.277476 TCATGTGTTGGTTTCAAGGAGTT 58.723 39.130 0.00 0.00 32.92 3.01
4791 8741 4.709397 TCATGTGTTGGTTTCAAGGAGTTT 59.291 37.500 0.00 0.00 32.92 2.66
4792 8742 5.888724 TCATGTGTTGGTTTCAAGGAGTTTA 59.111 36.000 0.00 0.00 32.92 2.01
4793 8743 6.549364 TCATGTGTTGGTTTCAAGGAGTTTAT 59.451 34.615 0.00 0.00 32.92 1.40
4794 8744 6.142818 TGTGTTGGTTTCAAGGAGTTTATG 57.857 37.500 0.00 0.00 32.92 1.90
4795 8745 5.654650 TGTGTTGGTTTCAAGGAGTTTATGT 59.345 36.000 0.00 0.00 32.92 2.29
4796 8746 5.977129 GTGTTGGTTTCAAGGAGTTTATGTG 59.023 40.000 0.00 0.00 32.92 3.21
4797 8747 5.068460 TGTTGGTTTCAAGGAGTTTATGTGG 59.932 40.000 0.00 0.00 32.92 4.17
4798 8748 4.798882 TGGTTTCAAGGAGTTTATGTGGT 58.201 39.130 0.00 0.00 0.00 4.16
4799 8749 4.582656 TGGTTTCAAGGAGTTTATGTGGTG 59.417 41.667 0.00 0.00 0.00 4.17
4800 8750 4.825085 GGTTTCAAGGAGTTTATGTGGTGA 59.175 41.667 0.00 0.00 0.00 4.02
4801 8751 5.476945 GGTTTCAAGGAGTTTATGTGGTGAT 59.523 40.000 0.00 0.00 0.00 3.06
4802 8752 6.349363 GGTTTCAAGGAGTTTATGTGGTGATC 60.349 42.308 0.00 0.00 0.00 2.92
4803 8753 5.497464 TCAAGGAGTTTATGTGGTGATCA 57.503 39.130 0.00 0.00 0.00 2.92
4804 8754 5.875224 TCAAGGAGTTTATGTGGTGATCAA 58.125 37.500 0.00 0.00 0.00 2.57
4805 8755 5.939883 TCAAGGAGTTTATGTGGTGATCAAG 59.060 40.000 0.00 0.00 0.00 3.02
4806 8756 4.848357 AGGAGTTTATGTGGTGATCAAGG 58.152 43.478 0.00 0.00 0.00 3.61
4807 8757 4.289672 AGGAGTTTATGTGGTGATCAAGGT 59.710 41.667 0.00 0.00 0.00 3.50
4808 8758 4.396166 GGAGTTTATGTGGTGATCAAGGTG 59.604 45.833 0.00 0.00 0.00 4.00
4809 8759 4.985538 AGTTTATGTGGTGATCAAGGTGT 58.014 39.130 0.00 0.00 0.00 4.16
4810 8760 5.385198 AGTTTATGTGGTGATCAAGGTGTT 58.615 37.500 0.00 0.00 0.00 3.32
4811 8761 6.539173 AGTTTATGTGGTGATCAAGGTGTTA 58.461 36.000 0.00 0.00 0.00 2.41
4812 8762 7.175104 AGTTTATGTGGTGATCAAGGTGTTAT 58.825 34.615 0.00 0.00 0.00 1.89
4813 8763 7.669722 AGTTTATGTGGTGATCAAGGTGTTATT 59.330 33.333 0.00 0.00 0.00 1.40
4814 8764 8.952278 GTTTATGTGGTGATCAAGGTGTTATTA 58.048 33.333 0.00 0.00 0.00 0.98
4815 8765 9.521841 TTTATGTGGTGATCAAGGTGTTATTAA 57.478 29.630 0.00 0.00 0.00 1.40
4816 8766 7.630242 ATGTGGTGATCAAGGTGTTATTAAG 57.370 36.000 0.00 0.00 0.00 1.85
4817 8767 5.943416 TGTGGTGATCAAGGTGTTATTAAGG 59.057 40.000 0.00 0.00 0.00 2.69
4818 8768 6.177610 GTGGTGATCAAGGTGTTATTAAGGA 58.822 40.000 0.00 0.00 0.00 3.36
4819 8769 6.657541 GTGGTGATCAAGGTGTTATTAAGGAA 59.342 38.462 0.00 0.00 0.00 3.36
4820 8770 7.339466 GTGGTGATCAAGGTGTTATTAAGGAAT 59.661 37.037 0.00 0.00 0.00 3.01
4821 8771 7.893302 TGGTGATCAAGGTGTTATTAAGGAATT 59.107 33.333 0.00 0.00 0.00 2.17
4822 8772 9.403583 GGTGATCAAGGTGTTATTAAGGAATTA 57.596 33.333 0.00 0.00 0.00 1.40
4845 8795 4.959596 CCAAAGATTGGTCATGTGAGAG 57.040 45.455 0.87 0.00 45.93 3.20
4846 8796 4.330250 CCAAAGATTGGTCATGTGAGAGT 58.670 43.478 0.87 0.00 45.93 3.24
4847 8797 4.763793 CCAAAGATTGGTCATGTGAGAGTT 59.236 41.667 0.87 0.00 45.93 3.01
4848 8798 5.335426 CCAAAGATTGGTCATGTGAGAGTTG 60.335 44.000 0.87 0.00 45.93 3.16
4849 8799 4.897509 AGATTGGTCATGTGAGAGTTGA 57.102 40.909 0.00 0.00 0.00 3.18
4850 8800 4.829968 AGATTGGTCATGTGAGAGTTGAG 58.170 43.478 0.00 0.00 0.00 3.02
4851 8801 2.462456 TGGTCATGTGAGAGTTGAGC 57.538 50.000 0.00 0.00 38.14 4.26
4852 8802 1.973515 TGGTCATGTGAGAGTTGAGCT 59.026 47.619 0.00 0.00 38.39 4.09
4853 8803 2.369860 TGGTCATGTGAGAGTTGAGCTT 59.630 45.455 0.00 0.00 38.39 3.74
4854 8804 3.578282 TGGTCATGTGAGAGTTGAGCTTA 59.422 43.478 0.00 0.00 38.39 3.09
4855 8805 4.223700 TGGTCATGTGAGAGTTGAGCTTAT 59.776 41.667 0.00 0.00 38.39 1.73
4856 8806 5.181748 GGTCATGTGAGAGTTGAGCTTATT 58.818 41.667 0.00 0.00 35.55 1.40
4857 8807 5.064452 GGTCATGTGAGAGTTGAGCTTATTG 59.936 44.000 0.00 0.00 35.55 1.90
4858 8808 4.633126 TCATGTGAGAGTTGAGCTTATTGC 59.367 41.667 0.00 0.00 43.29 3.56
4859 8809 4.006780 TGTGAGAGTTGAGCTTATTGCA 57.993 40.909 0.00 0.00 45.94 4.08
4860 8810 4.388485 TGTGAGAGTTGAGCTTATTGCAA 58.612 39.130 0.00 0.00 45.94 4.08
4861 8811 4.453478 TGTGAGAGTTGAGCTTATTGCAAG 59.547 41.667 4.94 0.00 45.94 4.01
4862 8812 3.438087 TGAGAGTTGAGCTTATTGCAAGC 59.562 43.478 4.94 2.46 45.94 4.01
4863 8813 3.415212 AGAGTTGAGCTTATTGCAAGCA 58.585 40.909 11.29 0.00 45.30 3.91
4864 8814 4.015084 AGAGTTGAGCTTATTGCAAGCAT 58.985 39.130 11.29 0.00 45.30 3.79
4865 8815 4.103357 GAGTTGAGCTTATTGCAAGCATG 58.897 43.478 11.29 2.60 45.30 4.06
4866 8816 3.508793 AGTTGAGCTTATTGCAAGCATGT 59.491 39.130 11.29 0.00 45.30 3.21
4867 8817 3.770263 TGAGCTTATTGCAAGCATGTC 57.230 42.857 11.29 3.24 45.30 3.06
4868 8818 3.349927 TGAGCTTATTGCAAGCATGTCT 58.650 40.909 11.29 0.66 45.30 3.41
4869 8819 3.760151 TGAGCTTATTGCAAGCATGTCTT 59.240 39.130 11.29 0.00 45.30 3.01
4879 8829 4.681835 CAAGCATGTCTTGGAGAAGAAG 57.318 45.455 17.17 0.00 46.50 2.85
4880 8830 4.321718 CAAGCATGTCTTGGAGAAGAAGA 58.678 43.478 17.17 0.00 46.50 2.87
4881 8831 4.840716 AGCATGTCTTGGAGAAGAAGAT 57.159 40.909 0.00 0.00 40.00 2.40
4882 8832 5.176741 AGCATGTCTTGGAGAAGAAGATT 57.823 39.130 0.00 0.00 40.00 2.40
4883 8833 4.942483 AGCATGTCTTGGAGAAGAAGATTG 59.058 41.667 0.00 0.00 40.00 2.67
4884 8834 4.699257 GCATGTCTTGGAGAAGAAGATTGT 59.301 41.667 0.00 0.00 40.00 2.71
4885 8835 5.391736 GCATGTCTTGGAGAAGAAGATTGTG 60.392 44.000 0.00 0.00 40.00 3.33
4886 8836 5.296151 TGTCTTGGAGAAGAAGATTGTGT 57.704 39.130 0.00 0.00 40.00 3.72
4887 8837 5.059161 TGTCTTGGAGAAGAAGATTGTGTG 58.941 41.667 0.00 0.00 40.00 3.82
4888 8838 5.163311 TGTCTTGGAGAAGAAGATTGTGTGA 60.163 40.000 0.00 0.00 40.00 3.58
4889 8839 5.936956 GTCTTGGAGAAGAAGATTGTGTGAT 59.063 40.000 0.00 0.00 40.00 3.06
4890 8840 6.091986 GTCTTGGAGAAGAAGATTGTGTGATC 59.908 42.308 0.00 0.00 40.00 2.92
4891 8841 5.488262 TGGAGAAGAAGATTGTGTGATCA 57.512 39.130 0.00 0.00 0.00 2.92
4892 8842 6.058553 TGGAGAAGAAGATTGTGTGATCAT 57.941 37.500 0.00 0.00 0.00 2.45
4893 8843 6.479006 TGGAGAAGAAGATTGTGTGATCATT 58.521 36.000 0.00 0.00 0.00 2.57
4894 8844 6.596888 TGGAGAAGAAGATTGTGTGATCATTC 59.403 38.462 0.00 0.00 0.00 2.67
4895 8845 6.596888 GGAGAAGAAGATTGTGTGATCATTCA 59.403 38.462 0.00 0.00 0.00 2.57
4896 8846 7.282675 GGAGAAGAAGATTGTGTGATCATTCAT 59.717 37.037 0.00 0.00 33.56 2.57
4897 8847 7.986562 AGAAGAAGATTGTGTGATCATTCATG 58.013 34.615 0.00 0.00 33.56 3.07
4898 8848 7.610692 AGAAGAAGATTGTGTGATCATTCATGT 59.389 33.333 0.00 0.00 33.56 3.21
4899 8849 8.797350 AAGAAGATTGTGTGATCATTCATGTA 57.203 30.769 0.00 0.00 33.56 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 212 2.045926 GAAGTGCCGGTGCCTCAT 60.046 61.111 1.90 0.00 36.33 2.90
209 227 7.827729 CCTATTGATCATGCTGGAATATCAGAA 59.172 37.037 0.00 0.00 36.93 3.02
218 236 4.987963 ATCACCTATTGATCATGCTGGA 57.012 40.909 0.00 0.00 41.53 3.86
300 1295 1.334869 CATGCCGTAAGCTTCATTCCC 59.665 52.381 0.00 0.00 44.23 3.97
444 1763 2.480587 CGTGTCAGTGTGTACCAAGACA 60.481 50.000 12.58 12.58 37.77 3.41
515 1834 2.159014 GGCAGTGTTACGGGATGTCATA 60.159 50.000 0.00 0.00 0.00 2.15
516 1835 1.406887 GGCAGTGTTACGGGATGTCAT 60.407 52.381 0.00 0.00 0.00 3.06
574 1899 2.388890 GATGATGTAGCTGCGGCCCT 62.389 60.000 15.55 0.00 39.73 5.19
646 1978 5.597182 GGAAAAGTCCACCCTCTTACTTTTT 59.403 40.000 11.91 0.00 46.61 1.94
1326 2688 1.741770 GTTCTCCTGCCGCGTGAAT 60.742 57.895 4.92 0.00 0.00 2.57
1672 3083 3.126171 GCACACAAAAAGGTTGGGAAAAC 59.874 43.478 0.00 0.00 0.00 2.43
1677 3088 2.393271 TTGCACACAAAAAGGTTGGG 57.607 45.000 0.00 0.00 31.21 4.12
1682 3093 4.026968 CGTAACACATTGCACACAAAAAGG 60.027 41.667 0.00 0.00 39.77 3.11
1684 3095 4.733850 TCGTAACACATTGCACACAAAAA 58.266 34.783 0.00 0.00 39.77 1.94
1719 3217 9.257651 GGATGAGCTAATTTAATGTAACGTACT 57.742 33.333 0.00 0.00 0.00 2.73
1720 3218 9.037737 TGGATGAGCTAATTTAATGTAACGTAC 57.962 33.333 0.00 0.00 0.00 3.67
1721 3219 9.037737 GTGGATGAGCTAATTTAATGTAACGTA 57.962 33.333 0.00 0.00 0.00 3.57
1880 5677 9.889128 TTGTACTGTCATGATTGAAGATGAATA 57.111 29.630 0.00 0.00 32.48 1.75
1935 5739 2.100197 CTAGGTGGTCAACGGATCTGA 58.900 52.381 9.00 0.00 0.00 3.27
1938 5742 0.527817 CGCTAGGTGGTCAACGGATC 60.528 60.000 0.00 0.00 0.00 3.36
1941 5745 1.445582 GTCGCTAGGTGGTCAACGG 60.446 63.158 0.00 0.00 0.00 4.44
1942 5746 1.800315 CGTCGCTAGGTGGTCAACG 60.800 63.158 0.00 0.00 0.00 4.10
1945 5749 1.303074 AGTCGTCGCTAGGTGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
1946 5750 1.136984 CAGTCGTCGCTAGGTGGTC 59.863 63.158 0.00 0.00 0.00 4.02
1948 5752 2.202623 GCAGTCGTCGCTAGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
1955 5759 3.038417 ACTGCTTGCAGTCGTCGC 61.038 61.111 20.95 0.00 0.00 5.19
1957 5761 0.937304 TTTCACTGCTTGCAGTCGTC 59.063 50.000 23.37 0.00 32.26 4.20
1964 5769 2.422276 AACCGAATTTCACTGCTTGC 57.578 45.000 0.00 0.00 0.00 4.01
1990 5795 5.636965 TGTCAAATCATTAAATGGCCAAACG 59.363 36.000 10.96 0.00 0.00 3.60
2002 5807 9.241919 ACCTGAACACATTATGTCAAATCATTA 57.758 29.630 0.00 0.00 42.31 1.90
2080 5889 7.447238 ACATCGGTATGAAACCCATTTATAAGG 59.553 37.037 0.00 0.00 46.62 2.69
2265 6099 3.715638 AGAAAGCTACCCCCAAAGTAC 57.284 47.619 0.00 0.00 0.00 2.73
2319 6153 4.084287 ACTGAACAAATCCACATGCATCT 58.916 39.130 0.00 0.00 0.00 2.90
2325 6159 4.118168 AGGGAACTGAACAAATCCACAT 57.882 40.909 0.00 0.00 41.13 3.21
2835 6732 6.589830 ACTAAATTGTCGATACATGCTCAC 57.410 37.500 0.00 0.00 34.97 3.51
2886 6783 7.306749 GCACTGAATTTTATGTTGTCCTTTGTG 60.307 37.037 0.00 0.00 0.00 3.33
2988 6903 4.377841 GCGTTGAAATTCCTCAAGTGAGAG 60.378 45.833 9.95 0.76 44.74 3.20
3002 6917 3.356529 AAGATCTCCTGGCGTTGAAAT 57.643 42.857 0.00 0.00 0.00 2.17
3173 7088 2.980548 AGCCCCGTACCATAGGAATTA 58.019 47.619 0.00 0.00 0.00 1.40
3295 7210 0.322975 CAGCTGCTTGACTAGGGTGT 59.677 55.000 0.00 0.00 0.00 4.16
3326 7241 3.444742 TGAAATCTTGCATCAAATCGGCT 59.555 39.130 0.00 0.00 0.00 5.52
3344 7259 4.282449 TGAGTGAGATAACCCGTCTTGAAA 59.718 41.667 0.00 0.00 0.00 2.69
3606 7521 9.053840 CATGACATCTCTTGCTATACTGAAAAT 57.946 33.333 0.00 0.00 0.00 1.82
3906 7821 3.290948 TGGTCACCTAGCACACTTTTT 57.709 42.857 0.00 0.00 0.00 1.94
3973 7888 8.121305 AGCATCCTGAATAAAACAACACATTA 57.879 30.769 0.00 0.00 0.00 1.90
3991 7907 3.186345 TCGAGTACCGAAGCATCCT 57.814 52.632 4.28 0.00 45.43 3.24
4025 7941 4.757019 TGTAAAACCACACACCACTCTA 57.243 40.909 0.00 0.00 0.00 2.43
4026 7942 3.637911 TGTAAAACCACACACCACTCT 57.362 42.857 0.00 0.00 0.00 3.24
4027 7943 4.911514 ATTGTAAAACCACACACCACTC 57.088 40.909 0.00 0.00 0.00 3.51
4028 7944 6.969993 AATATTGTAAAACCACACACCACT 57.030 33.333 0.00 0.00 0.00 4.00
4029 7945 7.649973 TGTAATATTGTAAAACCACACACCAC 58.350 34.615 0.00 0.00 0.00 4.16
4126 8056 8.266682 CACAAAGTACATACTATGTATTCACGC 58.733 37.037 11.32 0.00 46.39 5.34
4206 8141 8.584157 TGTGCATCAATAAGTAAAACCAAGATT 58.416 29.630 0.00 0.00 0.00 2.40
4213 8148 8.717821 TGTACTCTGTGCATCAATAAGTAAAAC 58.282 33.333 0.00 0.00 0.00 2.43
4222 8157 3.623906 AGCTGTACTCTGTGCATCAAT 57.376 42.857 0.00 0.00 0.00 2.57
4232 8167 6.878317 TCATTTACATGCTTAGCTGTACTCT 58.122 36.000 5.60 0.00 0.00 3.24
4262 8197 5.473504 AGTTACAACAAGGCGAAATCTGAAT 59.526 36.000 0.00 0.00 0.00 2.57
4279 8214 2.355310 CGGCTATGGTTGGGAGTTACAA 60.355 50.000 0.00 0.00 0.00 2.41
4280 8215 1.208535 CGGCTATGGTTGGGAGTTACA 59.791 52.381 0.00 0.00 0.00 2.41
4283 8218 1.077716 GCGGCTATGGTTGGGAGTT 60.078 57.895 0.00 0.00 0.00 3.01
4289 8224 1.240641 TGTTGTGGCGGCTATGGTTG 61.241 55.000 11.43 0.00 0.00 3.77
4290 8225 0.323360 ATGTTGTGGCGGCTATGGTT 60.323 50.000 11.43 0.00 0.00 3.67
4294 8229 1.152963 GGGATGTTGTGGCGGCTAT 60.153 57.895 11.43 0.00 0.00 2.97
4329 8264 0.832135 TGGGAAAGAGGAGTGCGACT 60.832 55.000 0.00 0.00 0.00 4.18
4333 8268 1.407989 CCAGATGGGAAAGAGGAGTGC 60.408 57.143 0.00 0.00 40.01 4.40
4335 8270 0.915364 GCCAGATGGGAAAGAGGAGT 59.085 55.000 0.12 0.00 40.01 3.85
4366 8301 2.623889 CGGATACCCACTCCTCTTGTAG 59.376 54.545 0.00 0.00 0.00 2.74
4367 8302 2.662866 CGGATACCCACTCCTCTTGTA 58.337 52.381 0.00 0.00 0.00 2.41
4382 8317 6.681729 AAAACATAAGGAGATAGGCGGATA 57.318 37.500 0.00 0.00 0.00 2.59
4391 8326 7.611855 CACTAGGGAACAAAAACATAAGGAGAT 59.388 37.037 0.00 0.00 0.00 2.75
4402 8348 4.753107 GTCGATGTCACTAGGGAACAAAAA 59.247 41.667 0.00 0.00 0.00 1.94
4409 8355 2.100197 CCTTGTCGATGTCACTAGGGA 58.900 52.381 0.00 0.00 34.25 4.20
4432 8378 0.384230 CAACACACCATCGTCGTTGC 60.384 55.000 0.00 0.00 31.53 4.17
4433 8379 0.234625 CCAACACACCATCGTCGTTG 59.765 55.000 0.00 0.00 37.33 4.10
4434 8380 0.105224 TCCAACACACCATCGTCGTT 59.895 50.000 0.00 0.00 0.00 3.85
4435 8381 0.105224 TTCCAACACACCATCGTCGT 59.895 50.000 0.00 0.00 0.00 4.34
4436 8382 1.438651 ATTCCAACACACCATCGTCG 58.561 50.000 0.00 0.00 0.00 5.12
4438 8384 4.280436 TCTTATTCCAACACACCATCGT 57.720 40.909 0.00 0.00 0.00 3.73
4448 8394 5.012251 GGGTAGGGAGAGATCTTATTCCAAC 59.988 48.000 18.17 15.31 0.00 3.77
4459 8405 0.398664 CCGTTGGGGTAGGGAGAGAT 60.399 60.000 0.00 0.00 0.00 2.75
4472 8418 1.339610 TGTTGGATCAAAAGCCGTTGG 59.660 47.619 0.00 0.00 31.80 3.77
4474 8420 1.339929 GGTGTTGGATCAAAAGCCGTT 59.660 47.619 0.00 0.00 31.80 4.44
4479 8425 4.379813 CCTTCATCGGTGTTGGATCAAAAG 60.380 45.833 0.00 0.00 0.00 2.27
4480 8426 3.505680 CCTTCATCGGTGTTGGATCAAAA 59.494 43.478 0.00 0.00 0.00 2.44
4483 8429 1.065491 CCCTTCATCGGTGTTGGATCA 60.065 52.381 10.43 0.00 0.00 2.92
4489 8435 3.104512 TCATAGTCCCTTCATCGGTGTT 58.895 45.455 0.00 0.00 0.00 3.32
4495 8441 5.814705 CACAAACTCTCATAGTCCCTTCATC 59.185 44.000 0.00 0.00 37.50 2.92
4504 8454 2.371841 TGGGCACACAAACTCTCATAGT 59.628 45.455 0.00 0.00 41.49 2.12
4514 8464 2.158986 CCAACATTTCTGGGCACACAAA 60.159 45.455 0.00 0.00 0.00 2.83
4521 8471 4.462483 TGAATAGAACCAACATTTCTGGGC 59.538 41.667 0.00 0.00 38.36 5.36
4528 8478 7.560991 TGCCAAGATATGAATAGAACCAACATT 59.439 33.333 0.00 0.00 0.00 2.71
4532 8482 8.415553 CAATTGCCAAGATATGAATAGAACCAA 58.584 33.333 0.00 0.00 0.00 3.67
4540 8490 5.422970 ACACACCAATTGCCAAGATATGAAT 59.577 36.000 0.00 0.00 0.00 2.57
4555 8505 4.437682 TCTCCTCAAAAGACACACCAAT 57.562 40.909 0.00 0.00 0.00 3.16
4563 8513 6.072452 CCAACCAATAGTTCTCCTCAAAAGAC 60.072 42.308 0.00 0.00 36.18 3.01
4565 8515 5.335976 GCCAACCAATAGTTCTCCTCAAAAG 60.336 44.000 0.00 0.00 36.18 2.27
4572 8522 4.511826 CGAATAGCCAACCAATAGTTCTCC 59.488 45.833 0.00 0.00 36.18 3.71
4597 8547 5.583854 CGGAAGAAGATGTCAAAGTCATCAT 59.416 40.000 8.30 0.00 42.63 2.45
4601 8551 4.058124 CACGGAAGAAGATGTCAAAGTCA 58.942 43.478 0.00 0.00 0.00 3.41
4613 8563 0.234884 GCGGAACAACACGGAAGAAG 59.765 55.000 0.00 0.00 0.00 2.85
4621 8571 4.025401 CCTGCCGCGGAACAACAC 62.025 66.667 33.48 9.92 0.00 3.32
4631 8581 3.075005 TACTCCCTCACCTGCCGC 61.075 66.667 0.00 0.00 0.00 6.53
4632 8582 1.682684 AGTACTCCCTCACCTGCCG 60.683 63.158 0.00 0.00 0.00 5.69
4639 8589 3.254093 TCTTTCACCAGTACTCCCTCA 57.746 47.619 0.00 0.00 0.00 3.86
4640 8590 3.323979 TGTTCTTTCACCAGTACTCCCTC 59.676 47.826 0.00 0.00 0.00 4.30
4641 8591 3.314693 TGTTCTTTCACCAGTACTCCCT 58.685 45.455 0.00 0.00 0.00 4.20
4642 8592 3.764237 TGTTCTTTCACCAGTACTCCC 57.236 47.619 0.00 0.00 0.00 4.30
4643 8593 3.437049 GCATGTTCTTTCACCAGTACTCC 59.563 47.826 0.00 0.00 0.00 3.85
4644 8594 3.123621 CGCATGTTCTTTCACCAGTACTC 59.876 47.826 0.00 0.00 0.00 2.59
4645 8595 3.067106 CGCATGTTCTTTCACCAGTACT 58.933 45.455 0.00 0.00 0.00 2.73
4646 8596 2.159627 CCGCATGTTCTTTCACCAGTAC 59.840 50.000 0.00 0.00 0.00 2.73
4647 8597 2.224426 ACCGCATGTTCTTTCACCAGTA 60.224 45.455 0.00 0.00 0.00 2.74
4648 8598 1.238439 CCGCATGTTCTTTCACCAGT 58.762 50.000 0.00 0.00 0.00 4.00
4649 8599 1.069022 CACCGCATGTTCTTTCACCAG 60.069 52.381 0.00 0.00 0.00 4.00
4650 8600 0.950836 CACCGCATGTTCTTTCACCA 59.049 50.000 0.00 0.00 0.00 4.17
4651 8601 0.387239 GCACCGCATGTTCTTTCACC 60.387 55.000 0.00 0.00 0.00 4.02
4652 8602 0.387239 GGCACCGCATGTTCTTTCAC 60.387 55.000 0.00 0.00 0.00 3.18
4653 8603 1.523154 GGGCACCGCATGTTCTTTCA 61.523 55.000 0.00 0.00 40.86 2.69
4654 8604 1.212751 GGGCACCGCATGTTCTTTC 59.787 57.895 0.00 0.00 40.86 2.62
4655 8605 3.365535 GGGCACCGCATGTTCTTT 58.634 55.556 0.00 0.00 40.86 2.52
4667 8617 0.472044 AAAACCAAACATGGGGGCAC 59.528 50.000 0.00 0.00 0.00 5.01
4668 8618 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
4669 8619 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
4670 8620 1.135960 ACCAAAACCAAACATGGGGG 58.864 50.000 0.00 0.00 37.26 5.40
4671 8621 4.632327 ATTACCAAAACCAAACATGGGG 57.368 40.909 0.00 0.00 37.26 4.96
4672 8622 5.615289 TCAATTACCAAAACCAAACATGGG 58.385 37.500 0.00 0.00 37.26 4.00
4673 8623 6.933521 TCATCAATTACCAAAACCAAACATGG 59.066 34.615 0.00 0.00 38.91 3.66
4674 8624 7.440556 TGTCATCAATTACCAAAACCAAACATG 59.559 33.333 0.00 0.00 0.00 3.21
4675 8625 7.504403 TGTCATCAATTACCAAAACCAAACAT 58.496 30.769 0.00 0.00 0.00 2.71
4676 8626 6.878317 TGTCATCAATTACCAAAACCAAACA 58.122 32.000 0.00 0.00 0.00 2.83
4677 8627 7.778470 TTGTCATCAATTACCAAAACCAAAC 57.222 32.000 0.00 0.00 0.00 2.93
4678 8628 8.428063 AGATTGTCATCAATTACCAAAACCAAA 58.572 29.630 0.00 0.00 43.33 3.28
4679 8629 7.961351 AGATTGTCATCAATTACCAAAACCAA 58.039 30.769 0.00 0.00 43.33 3.67
4680 8630 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
4681 8631 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
4684 8634 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
4685 8635 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
4686 8636 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
4687 8637 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
4691 8641 9.722184 CATTAGTCCATAGAGATTGTCATCAAT 57.278 33.333 0.00 0.00 45.57 2.57
4692 8642 8.152898 CCATTAGTCCATAGAGATTGTCATCAA 58.847 37.037 0.00 0.00 37.98 2.57
4693 8643 7.290948 ACCATTAGTCCATAGAGATTGTCATCA 59.709 37.037 0.00 0.00 0.00 3.07
4694 8644 7.675062 ACCATTAGTCCATAGAGATTGTCATC 58.325 38.462 0.00 0.00 0.00 2.92
4695 8645 7.623999 ACCATTAGTCCATAGAGATTGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
4696 8646 7.275183 CAACCATTAGTCCATAGAGATTGTCA 58.725 38.462 0.00 0.00 0.00 3.58
4697 8647 6.203723 GCAACCATTAGTCCATAGAGATTGTC 59.796 42.308 0.00 0.00 0.00 3.18
4698 8648 6.058183 GCAACCATTAGTCCATAGAGATTGT 58.942 40.000 0.00 0.00 0.00 2.71
4699 8649 5.471456 GGCAACCATTAGTCCATAGAGATTG 59.529 44.000 0.00 0.00 0.00 2.67
4700 8650 5.370880 AGGCAACCATTAGTCCATAGAGATT 59.629 40.000 0.00 0.00 37.17 2.40
4701 8651 4.910304 AGGCAACCATTAGTCCATAGAGAT 59.090 41.667 0.00 0.00 37.17 2.75
4702 8652 4.298626 AGGCAACCATTAGTCCATAGAGA 58.701 43.478 0.00 0.00 37.17 3.10
4703 8653 4.696479 AGGCAACCATTAGTCCATAGAG 57.304 45.455 0.00 0.00 37.17 2.43
4704 8654 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
4705 8655 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
4706 8656 4.227300 ACTCAAGGCAACCATTAGTCCATA 59.773 41.667 0.00 0.00 37.17 2.74
4707 8657 3.010584 ACTCAAGGCAACCATTAGTCCAT 59.989 43.478 0.00 0.00 37.17 3.41
4708 8658 2.375174 ACTCAAGGCAACCATTAGTCCA 59.625 45.455 0.00 0.00 37.17 4.02
4709 8659 3.073274 ACTCAAGGCAACCATTAGTCC 57.927 47.619 0.00 0.00 37.17 3.85
4710 8660 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
4711 8661 8.686334 CAAATATAACTCAAGGCAACCATTAGT 58.314 33.333 0.00 0.00 37.17 2.24
4712 8662 8.902806 TCAAATATAACTCAAGGCAACCATTAG 58.097 33.333 0.00 0.00 37.17 1.73
4713 8663 8.815565 TCAAATATAACTCAAGGCAACCATTA 57.184 30.769 0.00 0.00 37.17 1.90
4714 8664 7.716799 TCAAATATAACTCAAGGCAACCATT 57.283 32.000 0.00 0.00 37.17 3.16
4715 8665 7.147846 CCTTCAAATATAACTCAAGGCAACCAT 60.148 37.037 0.00 0.00 37.17 3.55
4716 8666 6.152661 CCTTCAAATATAACTCAAGGCAACCA 59.847 38.462 0.00 0.00 37.17 3.67
4717 8667 6.377146 TCCTTCAAATATAACTCAAGGCAACC 59.623 38.462 0.00 0.00 32.00 3.77
4718 8668 7.391148 TCCTTCAAATATAACTCAAGGCAAC 57.609 36.000 0.00 0.00 32.00 4.17
4719 8669 8.593945 AATCCTTCAAATATAACTCAAGGCAA 57.406 30.769 0.00 0.00 32.00 4.52
4720 8670 8.469200 CAAATCCTTCAAATATAACTCAAGGCA 58.531 33.333 0.00 0.00 32.00 4.75
4721 8671 8.470002 ACAAATCCTTCAAATATAACTCAAGGC 58.530 33.333 0.00 0.00 32.00 4.35
4724 8674 9.527157 TGGACAAATCCTTCAAATATAACTCAA 57.473 29.630 0.00 0.00 46.43 3.02
4725 8675 8.956426 GTGGACAAATCCTTCAAATATAACTCA 58.044 33.333 0.00 0.00 46.43 3.41
4726 8676 8.956426 TGTGGACAAATCCTTCAAATATAACTC 58.044 33.333 0.00 0.00 46.43 3.01
4727 8677 8.877864 TGTGGACAAATCCTTCAAATATAACT 57.122 30.769 0.00 0.00 46.43 2.24
4728 8678 8.190784 CCTGTGGACAAATCCTTCAAATATAAC 58.809 37.037 0.00 0.00 46.43 1.89
4729 8679 7.147915 GCCTGTGGACAAATCCTTCAAATATAA 60.148 37.037 0.00 0.00 46.43 0.98
4730 8680 6.321181 GCCTGTGGACAAATCCTTCAAATATA 59.679 38.462 0.00 0.00 46.43 0.86
4731 8681 5.127682 GCCTGTGGACAAATCCTTCAAATAT 59.872 40.000 0.00 0.00 46.43 1.28
4732 8682 4.462483 GCCTGTGGACAAATCCTTCAAATA 59.538 41.667 0.00 0.00 46.43 1.40
4733 8683 3.259123 GCCTGTGGACAAATCCTTCAAAT 59.741 43.478 0.00 0.00 46.43 2.32
4734 8684 2.627699 GCCTGTGGACAAATCCTTCAAA 59.372 45.455 0.00 0.00 46.43 2.69
4735 8685 2.238521 GCCTGTGGACAAATCCTTCAA 58.761 47.619 0.00 0.00 46.43 2.69
4736 8686 1.144708 TGCCTGTGGACAAATCCTTCA 59.855 47.619 0.00 0.00 46.43 3.02
4737 8687 1.909700 TGCCTGTGGACAAATCCTTC 58.090 50.000 0.00 0.00 46.43 3.46
4738 8688 2.610438 ATGCCTGTGGACAAATCCTT 57.390 45.000 0.00 0.00 46.43 3.36
4739 8689 2.610438 AATGCCTGTGGACAAATCCT 57.390 45.000 0.00 0.00 46.43 3.24
4740 8690 2.827921 AGAAATGCCTGTGGACAAATCC 59.172 45.455 0.00 0.00 46.48 3.01
4741 8691 4.022068 TCAAGAAATGCCTGTGGACAAATC 60.022 41.667 0.00 0.00 0.00 2.17
4742 8692 3.896888 TCAAGAAATGCCTGTGGACAAAT 59.103 39.130 0.00 0.00 0.00 2.32
4743 8693 3.295093 TCAAGAAATGCCTGTGGACAAA 58.705 40.909 0.00 0.00 0.00 2.83
4744 8694 2.942804 TCAAGAAATGCCTGTGGACAA 58.057 42.857 0.00 0.00 0.00 3.18
4745 8695 2.655090 TCAAGAAATGCCTGTGGACA 57.345 45.000 0.00 0.00 0.00 4.02
4746 8696 4.525912 AATTCAAGAAATGCCTGTGGAC 57.474 40.909 0.00 0.00 0.00 4.02
4747 8697 4.588106 TGAAATTCAAGAAATGCCTGTGGA 59.412 37.500 0.00 0.00 0.00 4.02
4748 8698 4.885413 TGAAATTCAAGAAATGCCTGTGG 58.115 39.130 0.00 0.00 0.00 4.17
4749 8699 5.929992 ACATGAAATTCAAGAAATGCCTGTG 59.070 36.000 5.15 0.00 0.00 3.66
4750 8700 5.929992 CACATGAAATTCAAGAAATGCCTGT 59.070 36.000 5.15 0.00 0.00 4.00
4751 8701 5.929992 ACACATGAAATTCAAGAAATGCCTG 59.070 36.000 5.15 0.00 0.00 4.85
4752 8702 6.105397 ACACATGAAATTCAAGAAATGCCT 57.895 33.333 5.15 0.00 0.00 4.75
4753 8703 6.347888 CCAACACATGAAATTCAAGAAATGCC 60.348 38.462 5.15 0.00 0.00 4.40
4754 8704 6.203338 ACCAACACATGAAATTCAAGAAATGC 59.797 34.615 5.15 0.00 0.00 3.56
4755 8705 7.718272 ACCAACACATGAAATTCAAGAAATG 57.282 32.000 5.15 0.00 0.00 2.32
4756 8706 8.735692 AAACCAACACATGAAATTCAAGAAAT 57.264 26.923 5.15 0.00 0.00 2.17
4757 8707 7.821359 TGAAACCAACACATGAAATTCAAGAAA 59.179 29.630 5.15 0.00 0.00 2.52
4758 8708 7.326454 TGAAACCAACACATGAAATTCAAGAA 58.674 30.769 5.15 0.00 0.00 2.52
4759 8709 6.871844 TGAAACCAACACATGAAATTCAAGA 58.128 32.000 5.15 0.00 0.00 3.02
4760 8710 7.254522 CCTTGAAACCAACACATGAAATTCAAG 60.255 37.037 19.49 19.49 43.33 3.02
4761 8711 6.538021 CCTTGAAACCAACACATGAAATTCAA 59.462 34.615 0.00 5.72 35.42 2.69
4762 8712 6.047870 CCTTGAAACCAACACATGAAATTCA 58.952 36.000 0.00 0.00 0.00 2.57
4763 8713 6.279882 TCCTTGAAACCAACACATGAAATTC 58.720 36.000 0.00 0.00 0.00 2.17
4764 8714 6.127083 ACTCCTTGAAACCAACACATGAAATT 60.127 34.615 0.00 0.00 0.00 1.82
4765 8715 5.363580 ACTCCTTGAAACCAACACATGAAAT 59.636 36.000 0.00 0.00 0.00 2.17
4766 8716 4.709397 ACTCCTTGAAACCAACACATGAAA 59.291 37.500 0.00 0.00 0.00 2.69
4767 8717 4.277476 ACTCCTTGAAACCAACACATGAA 58.723 39.130 0.00 0.00 0.00 2.57
4768 8718 3.897239 ACTCCTTGAAACCAACACATGA 58.103 40.909 0.00 0.00 0.00 3.07
4769 8719 4.654091 AACTCCTTGAAACCAACACATG 57.346 40.909 0.00 0.00 0.00 3.21
4770 8720 6.323739 ACATAAACTCCTTGAAACCAACACAT 59.676 34.615 0.00 0.00 0.00 3.21
4771 8721 5.654650 ACATAAACTCCTTGAAACCAACACA 59.345 36.000 0.00 0.00 0.00 3.72
4772 8722 5.977129 CACATAAACTCCTTGAAACCAACAC 59.023 40.000 0.00 0.00 0.00 3.32
4773 8723 5.068460 CCACATAAACTCCTTGAAACCAACA 59.932 40.000 0.00 0.00 0.00 3.33
4774 8724 5.068591 ACCACATAAACTCCTTGAAACCAAC 59.931 40.000 0.00 0.00 0.00 3.77
4775 8725 5.068460 CACCACATAAACTCCTTGAAACCAA 59.932 40.000 0.00 0.00 0.00 3.67
4776 8726 4.582656 CACCACATAAACTCCTTGAAACCA 59.417 41.667 0.00 0.00 0.00 3.67
4777 8727 4.825085 TCACCACATAAACTCCTTGAAACC 59.175 41.667 0.00 0.00 0.00 3.27
4778 8728 6.206634 TGATCACCACATAAACTCCTTGAAAC 59.793 38.462 0.00 0.00 0.00 2.78
4779 8729 6.303054 TGATCACCACATAAACTCCTTGAAA 58.697 36.000 0.00 0.00 0.00 2.69
4780 8730 5.875224 TGATCACCACATAAACTCCTTGAA 58.125 37.500 0.00 0.00 0.00 2.69
4781 8731 5.497464 TGATCACCACATAAACTCCTTGA 57.503 39.130 0.00 0.00 0.00 3.02
4782 8732 5.124457 CCTTGATCACCACATAAACTCCTTG 59.876 44.000 0.00 0.00 0.00 3.61
4783 8733 5.222130 ACCTTGATCACCACATAAACTCCTT 60.222 40.000 0.00 0.00 0.00 3.36
4784 8734 4.289672 ACCTTGATCACCACATAAACTCCT 59.710 41.667 0.00 0.00 0.00 3.69
4785 8735 4.396166 CACCTTGATCACCACATAAACTCC 59.604 45.833 0.00 0.00 0.00 3.85
4786 8736 5.003804 ACACCTTGATCACCACATAAACTC 58.996 41.667 0.00 0.00 0.00 3.01
4787 8737 4.985538 ACACCTTGATCACCACATAAACT 58.014 39.130 0.00 0.00 0.00 2.66
4788 8738 5.705609 AACACCTTGATCACCACATAAAC 57.294 39.130 0.00 0.00 0.00 2.01
4789 8739 9.521841 TTAATAACACCTTGATCACCACATAAA 57.478 29.630 0.00 0.00 0.00 1.40
4790 8740 9.173021 CTTAATAACACCTTGATCACCACATAA 57.827 33.333 0.00 0.00 0.00 1.90
4791 8741 7.773224 CCTTAATAACACCTTGATCACCACATA 59.227 37.037 0.00 0.00 0.00 2.29
4792 8742 6.603201 CCTTAATAACACCTTGATCACCACAT 59.397 38.462 0.00 0.00 0.00 3.21
4793 8743 5.943416 CCTTAATAACACCTTGATCACCACA 59.057 40.000 0.00 0.00 0.00 4.17
4794 8744 6.177610 TCCTTAATAACACCTTGATCACCAC 58.822 40.000 0.00 0.00 0.00 4.16
4795 8745 6.381498 TCCTTAATAACACCTTGATCACCA 57.619 37.500 0.00 0.00 0.00 4.17
4796 8746 7.881775 ATTCCTTAATAACACCTTGATCACC 57.118 36.000 0.00 0.00 0.00 4.02
4801 8751 9.983024 TTGGATAATTCCTTAATAACACCTTGA 57.017 29.630 0.00 0.00 43.07 3.02
4825 8775 5.471116 TCAACTCTCACATGACCAATCTTTG 59.529 40.000 0.00 0.00 0.00 2.77
4826 8776 5.624159 TCAACTCTCACATGACCAATCTTT 58.376 37.500 0.00 0.00 0.00 2.52
4827 8777 5.233083 TCAACTCTCACATGACCAATCTT 57.767 39.130 0.00 0.00 0.00 2.40
4828 8778 4.829968 CTCAACTCTCACATGACCAATCT 58.170 43.478 0.00 0.00 0.00 2.40
4829 8779 3.373439 GCTCAACTCTCACATGACCAATC 59.627 47.826 0.00 0.00 0.00 2.67
4830 8780 3.008813 AGCTCAACTCTCACATGACCAAT 59.991 43.478 0.00 0.00 0.00 3.16
4831 8781 2.369860 AGCTCAACTCTCACATGACCAA 59.630 45.455 0.00 0.00 0.00 3.67
4832 8782 1.973515 AGCTCAACTCTCACATGACCA 59.026 47.619 0.00 0.00 0.00 4.02
4833 8783 2.758736 AGCTCAACTCTCACATGACC 57.241 50.000 0.00 0.00 0.00 4.02
4834 8784 5.447010 GCAATAAGCTCAACTCTCACATGAC 60.447 44.000 0.00 0.00 41.15 3.06
4835 8785 4.633126 GCAATAAGCTCAACTCTCACATGA 59.367 41.667 0.00 0.00 41.15 3.07
4836 8786 4.393990 TGCAATAAGCTCAACTCTCACATG 59.606 41.667 0.00 0.00 45.94 3.21
4837 8787 4.582869 TGCAATAAGCTCAACTCTCACAT 58.417 39.130 0.00 0.00 45.94 3.21
4838 8788 4.006780 TGCAATAAGCTCAACTCTCACA 57.993 40.909 0.00 0.00 45.94 3.58
4839 8789 4.671250 GCTTGCAATAAGCTCAACTCTCAC 60.671 45.833 0.00 0.00 45.94 3.51
4840 8790 3.438087 GCTTGCAATAAGCTCAACTCTCA 59.562 43.478 0.00 0.00 45.94 3.27
4841 8791 3.438087 TGCTTGCAATAAGCTCAACTCTC 59.562 43.478 10.10 0.00 45.94 3.20
4842 8792 3.415212 TGCTTGCAATAAGCTCAACTCT 58.585 40.909 10.10 0.00 45.94 3.24
4843 8793 3.837213 TGCTTGCAATAAGCTCAACTC 57.163 42.857 10.10 0.00 45.94 3.01
4844 8794 3.508793 ACATGCTTGCAATAAGCTCAACT 59.491 39.130 10.10 0.00 45.94 3.16
4845 8795 3.841643 ACATGCTTGCAATAAGCTCAAC 58.158 40.909 10.10 0.00 45.94 3.18
4846 8796 3.760151 AGACATGCTTGCAATAAGCTCAA 59.240 39.130 10.10 0.00 45.94 3.02
4847 8797 3.349927 AGACATGCTTGCAATAAGCTCA 58.650 40.909 10.10 0.00 45.94 4.26
4848 8798 4.103357 CAAGACATGCTTGCAATAAGCTC 58.897 43.478 14.20 0.27 46.67 4.09
4849 8799 4.106029 CAAGACATGCTTGCAATAAGCT 57.894 40.909 14.20 0.00 46.67 3.74
4859 8809 4.630644 TCTTCTTCTCCAAGACATGCTT 57.369 40.909 0.00 0.00 38.44 3.91
4860 8810 4.840716 ATCTTCTTCTCCAAGACATGCT 57.159 40.909 0.00 0.00 38.44 3.79
4861 8811 4.699257 ACAATCTTCTTCTCCAAGACATGC 59.301 41.667 0.00 0.00 38.44 4.06
4862 8812 5.704515 ACACAATCTTCTTCTCCAAGACATG 59.295 40.000 0.00 0.00 38.44 3.21
4863 8813 5.704515 CACACAATCTTCTTCTCCAAGACAT 59.295 40.000 0.00 0.00 38.44 3.06
4864 8814 5.059161 CACACAATCTTCTTCTCCAAGACA 58.941 41.667 0.00 0.00 38.44 3.41
4865 8815 5.300752 TCACACAATCTTCTTCTCCAAGAC 58.699 41.667 0.00 0.00 38.44 3.01
4866 8816 5.551305 TCACACAATCTTCTTCTCCAAGA 57.449 39.130 0.00 0.00 36.82 3.02
4867 8817 5.936372 TGATCACACAATCTTCTTCTCCAAG 59.064 40.000 0.00 0.00 0.00 3.61
4868 8818 5.868454 TGATCACACAATCTTCTTCTCCAA 58.132 37.500 0.00 0.00 0.00 3.53
4869 8819 5.488262 TGATCACACAATCTTCTTCTCCA 57.512 39.130 0.00 0.00 0.00 3.86
4870 8820 6.596888 TGAATGATCACACAATCTTCTTCTCC 59.403 38.462 0.00 0.00 0.00 3.71
4871 8821 7.606858 TGAATGATCACACAATCTTCTTCTC 57.393 36.000 0.00 0.00 0.00 2.87
4872 8822 7.610692 ACATGAATGATCACACAATCTTCTTCT 59.389 33.333 0.00 0.00 38.69 2.85
4873 8823 7.759465 ACATGAATGATCACACAATCTTCTTC 58.241 34.615 0.00 0.00 38.69 2.87
4874 8824 7.698506 ACATGAATGATCACACAATCTTCTT 57.301 32.000 0.00 0.00 38.69 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.