Multiple sequence alignment - TraesCS6D01G222100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G222100 chr6D 100.000 3290 0 0 1 3290 313023691 313026980 0.000000e+00 6076.0
1 TraesCS6D01G222100 chr6D 87.908 306 32 1 2627 2932 470390717 470390417 4.040000e-94 355.0
2 TraesCS6D01G222100 chr6D 90.741 54 5 0 3080 3133 410110851 410110904 4.550000e-09 73.1
3 TraesCS6D01G222100 chr6D 97.368 38 1 0 3092 3129 451106420 451106383 7.620000e-07 65.8
4 TraesCS6D01G222100 chr6B 92.349 2026 88 23 407 2405 513330998 513332983 0.000000e+00 2820.0
5 TraesCS6D01G222100 chr6B 89.941 169 11 4 3127 3290 513333017 513333184 2.570000e-51 213.0
6 TraesCS6D01G222100 chr6B 92.857 98 5 2 3194 3290 513338704 513338800 1.230000e-29 141.0
7 TraesCS6D01G222100 chr6B 95.349 86 3 1 3206 3290 513333661 513333746 5.730000e-28 135.0
8 TraesCS6D01G222100 chr6B 91.837 98 6 2 3194 3290 513334212 513334308 5.730000e-28 135.0
9 TraesCS6D01G222100 chr6B 94.318 88 4 1 3204 3290 513335907 513335994 2.060000e-27 134.0
10 TraesCS6D01G222100 chr6B 94.318 88 4 1 3204 3290 513337589 513337676 2.060000e-27 134.0
11 TraesCS6D01G222100 chr6B 94.318 88 4 1 3204 3290 513338151 513338238 2.060000e-27 134.0
12 TraesCS6D01G222100 chr6B 90.816 98 7 2 3194 3290 513339828 513339924 2.660000e-26 130.0
13 TraesCS6D01G222100 chr6B 90.816 98 7 2 3194 3290 513342076 513342172 2.660000e-26 130.0
14 TraesCS6D01G222100 chr6B 97.222 36 1 0 3028 3063 513332982 513333017 9.860000e-06 62.1
15 TraesCS6D01G222100 chr6A 93.695 1808 76 15 623 2411 449963418 449965206 0.000000e+00 2673.0
16 TraesCS6D01G222100 chr6A 87.566 378 35 8 1 369 214325844 214325470 8.440000e-116 427.0
17 TraesCS6D01G222100 chr6A 96.610 59 2 0 2995 3053 449965204 449965262 7.510000e-17 99.0
18 TraesCS6D01G222100 chr1A 97.227 577 11 3 2417 2993 452052742 452052171 0.000000e+00 972.0
19 TraesCS6D01G222100 chr7B 97.059 578 13 2 2417 2993 14900971 14900397 0.000000e+00 970.0
20 TraesCS6D01G222100 chr7B 97.727 44 1 0 3089 3132 252685988 252686031 3.520000e-10 76.8
21 TraesCS6D01G222100 chr3B 97.059 578 13 2 2417 2993 229461582 229461008 0.000000e+00 970.0
22 TraesCS6D01G222100 chr3B 92.794 569 37 2 2422 2990 358898563 358899127 0.000000e+00 821.0
23 TraesCS6D01G222100 chr3B 100.000 41 0 0 3089 3129 40772073 40772033 3.520000e-10 76.8
24 TraesCS6D01G222100 chr3B 93.878 49 3 0 3085 3133 602475779 602475731 1.270000e-09 75.0
25 TraesCS6D01G222100 chr5A 96.880 577 13 3 2417 2993 579412447 579411876 0.000000e+00 961.0
26 TraesCS6D01G222100 chr3D 87.532 393 40 7 1 388 25470240 25470628 2.330000e-121 446.0
27 TraesCS6D01G222100 chr3D 78.403 551 102 14 2422 2966 191562210 191561671 3.140000e-90 342.0
28 TraesCS6D01G222100 chr7D 86.260 393 46 7 1 388 37740702 37740313 1.410000e-113 420.0
29 TraesCS6D01G222100 chr7D 89.706 68 2 1 3065 3132 627318522 627318460 7.570000e-12 82.4
30 TraesCS6D01G222100 chr7D 92.500 40 0 3 3048 3087 187081906 187081942 2.000000e-03 54.7
31 TraesCS6D01G222100 chr4D 86.280 379 40 6 1 369 235500732 235500356 5.110000e-108 401.0
32 TraesCS6D01G222100 chr2D 87.616 323 21 6 1 319 37821152 37820845 1.120000e-94 357.0
33 TraesCS6D01G222100 chr2D 95.349 43 2 0 3080 3122 533671614 533671656 5.890000e-08 69.4
34 TraesCS6D01G222100 chr4A 95.556 45 2 0 3084 3128 543333388 543333344 4.550000e-09 73.1
35 TraesCS6D01G222100 chr5B 83.582 67 9 2 3064 3130 533569817 533569881 9.860000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G222100 chr6D 313023691 313026980 3289 False 6076.000000 6076 100.000000 1 3290 1 chr6D.!!$F1 3289
1 TraesCS6D01G222100 chr6B 513330998 513342172 11174 False 378.918182 2820 93.103727 407 3290 11 chr6B.!!$F1 2883
2 TraesCS6D01G222100 chr6A 449963418 449965262 1844 False 1386.000000 2673 95.152500 623 3053 2 chr6A.!!$F1 2430
3 TraesCS6D01G222100 chr1A 452052171 452052742 571 True 972.000000 972 97.227000 2417 2993 1 chr1A.!!$R1 576
4 TraesCS6D01G222100 chr7B 14900397 14900971 574 True 970.000000 970 97.059000 2417 2993 1 chr7B.!!$R1 576
5 TraesCS6D01G222100 chr3B 229461008 229461582 574 True 970.000000 970 97.059000 2417 2993 1 chr3B.!!$R2 576
6 TraesCS6D01G222100 chr3B 358898563 358899127 564 False 821.000000 821 92.794000 2422 2990 1 chr3B.!!$F1 568
7 TraesCS6D01G222100 chr5A 579411876 579412447 571 True 961.000000 961 96.880000 2417 2993 1 chr5A.!!$R1 576
8 TraesCS6D01G222100 chr3D 191561671 191562210 539 True 342.000000 342 78.403000 2422 2966 1 chr3D.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.035458 AAGGAAGCGGTCTGGACAAG 59.965 55.0 3.1 0.0 0.00 3.16 F
333 334 0.108377 CCACGATGATGAACCCGACA 60.108 55.0 0.0 0.0 0.00 4.35 F
346 347 0.110238 CCCGACAAACTCAATGCGTG 60.110 55.0 0.0 0.0 0.00 5.34 F
451 452 0.251386 TTCGTGAGAGCCTGAGAGGT 60.251 55.0 0.0 0.0 43.69 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2169 0.462225 CCATCTGCCTCAGCTCACTG 60.462 60.000 0.0 0.0 45.95 3.66 R
2149 2170 0.616964 TCCATCTGCCTCAGCTCACT 60.617 55.000 0.0 0.0 40.80 3.41 R
2202 2223 1.785041 GCGGACACTTCAGCAAGCAA 61.785 55.000 0.0 0.0 42.10 3.91 R
2429 2471 3.495453 CCTTCTGGACCCGTCTTTTGTTA 60.495 47.826 0.0 0.0 34.57 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.437867 CCCTCGTCCTCCTGATCG 58.562 66.667 0.00 0.00 0.00 3.69
18 19 1.152943 CCCTCGTCCTCCTGATCGA 60.153 63.158 0.00 0.00 0.00 3.59
19 20 1.169661 CCCTCGTCCTCCTGATCGAG 61.170 65.000 6.47 6.47 45.89 4.04
20 21 1.652012 CTCGTCCTCCTGATCGAGC 59.348 63.158 0.00 0.00 41.98 5.03
21 22 1.791103 CTCGTCCTCCTGATCGAGCC 61.791 65.000 0.00 0.00 41.98 4.70
22 23 2.725008 GTCCTCCTGATCGAGCCG 59.275 66.667 0.00 0.00 0.00 5.52
23 24 1.824329 GTCCTCCTGATCGAGCCGA 60.824 63.158 0.00 0.00 41.13 5.54
24 25 1.527148 TCCTCCTGATCGAGCCGAG 60.527 63.158 0.00 2.91 39.91 4.63
25 26 2.334653 CTCCTGATCGAGCCGAGC 59.665 66.667 0.00 5.99 42.86 5.03
26 27 3.206211 CTCCTGATCGAGCCGAGCC 62.206 68.421 9.73 2.75 41.81 4.70
27 28 3.531207 CCTGATCGAGCCGAGCCA 61.531 66.667 9.73 6.41 41.81 4.75
28 29 2.279120 CTGATCGAGCCGAGCCAC 60.279 66.667 9.73 0.72 41.81 5.01
29 30 3.781770 CTGATCGAGCCGAGCCACC 62.782 68.421 9.73 0.00 41.81 4.61
30 31 3.838271 GATCGAGCCGAGCCACCA 61.838 66.667 2.01 0.00 39.91 4.17
31 32 3.157217 GATCGAGCCGAGCCACCAT 62.157 63.158 2.01 0.00 39.91 3.55
32 33 3.451556 ATCGAGCCGAGCCACCATG 62.452 63.158 3.76 0.00 39.91 3.66
34 35 3.785859 GAGCCGAGCCACCATGGA 61.786 66.667 21.47 0.00 40.96 3.41
35 36 4.101448 AGCCGAGCCACCATGGAC 62.101 66.667 21.47 7.45 40.96 4.02
37 38 4.838152 CCGAGCCACCATGGACGG 62.838 72.222 21.47 19.11 46.01 4.79
41 42 4.722700 GCCACCATGGACGGCTGT 62.723 66.667 30.76 0.00 40.96 4.40
42 43 2.034066 CCACCATGGACGGCTGTT 59.966 61.111 21.47 0.00 40.96 3.16
43 44 2.334946 CCACCATGGACGGCTGTTG 61.335 63.158 21.47 2.90 40.96 3.33
44 45 2.672996 ACCATGGACGGCTGTTGC 60.673 61.111 21.47 0.00 38.76 4.17
45 46 3.803082 CCATGGACGGCTGTTGCG 61.803 66.667 5.56 0.00 40.82 4.85
46 47 3.049674 CATGGACGGCTGTTGCGT 61.050 61.111 0.00 0.00 40.82 5.24
47 48 2.742372 ATGGACGGCTGTTGCGTC 60.742 61.111 0.00 1.15 40.82 5.19
66 67 2.650196 GCATTGACTGCGGGCAAA 59.350 55.556 19.89 1.28 41.97 3.68
67 68 1.734117 GCATTGACTGCGGGCAAAC 60.734 57.895 19.89 9.97 41.97 2.93
68 69 1.442520 CATTGACTGCGGGCAAACG 60.443 57.895 19.89 8.81 0.00 3.60
146 147 4.660938 GGCGCCACCCCTCAACTT 62.661 66.667 24.80 0.00 0.00 2.66
147 148 3.056328 GCGCCACCCCTCAACTTC 61.056 66.667 0.00 0.00 0.00 3.01
148 149 2.750350 CGCCACCCCTCAACTTCT 59.250 61.111 0.00 0.00 0.00 2.85
149 150 1.376037 CGCCACCCCTCAACTTCTC 60.376 63.158 0.00 0.00 0.00 2.87
150 151 1.002011 GCCACCCCTCAACTTCTCC 60.002 63.158 0.00 0.00 0.00 3.71
151 152 1.492993 GCCACCCCTCAACTTCTCCT 61.493 60.000 0.00 0.00 0.00 3.69
152 153 0.326264 CCACCCCTCAACTTCTCCTG 59.674 60.000 0.00 0.00 0.00 3.86
153 154 0.322008 CACCCCTCAACTTCTCCTGC 60.322 60.000 0.00 0.00 0.00 4.85
154 155 1.301293 CCCCTCAACTTCTCCTGCC 59.699 63.158 0.00 0.00 0.00 4.85
155 156 1.301293 CCCTCAACTTCTCCTGCCC 59.699 63.158 0.00 0.00 0.00 5.36
156 157 1.492133 CCCTCAACTTCTCCTGCCCA 61.492 60.000 0.00 0.00 0.00 5.36
157 158 0.401738 CCTCAACTTCTCCTGCCCAA 59.598 55.000 0.00 0.00 0.00 4.12
158 159 1.528129 CTCAACTTCTCCTGCCCAAC 58.472 55.000 0.00 0.00 0.00 3.77
159 160 0.110486 TCAACTTCTCCTGCCCAACC 59.890 55.000 0.00 0.00 0.00 3.77
160 161 0.895559 CAACTTCTCCTGCCCAACCC 60.896 60.000 0.00 0.00 0.00 4.11
161 162 2.045926 CTTCTCCTGCCCAACCCG 60.046 66.667 0.00 0.00 0.00 5.28
162 163 4.344865 TTCTCCTGCCCAACCCGC 62.345 66.667 0.00 0.00 0.00 6.13
170 171 4.426313 CCCAACCCGCCCCTCTTC 62.426 72.222 0.00 0.00 0.00 2.87
171 172 3.330720 CCAACCCGCCCCTCTTCT 61.331 66.667 0.00 0.00 0.00 2.85
172 173 2.269241 CAACCCGCCCCTCTTCTC 59.731 66.667 0.00 0.00 0.00 2.87
173 174 3.009714 AACCCGCCCCTCTTCTCC 61.010 66.667 0.00 0.00 0.00 3.71
178 179 3.855853 GCCCCTCTTCTCCCGCTC 61.856 72.222 0.00 0.00 0.00 5.03
179 180 3.157949 CCCCTCTTCTCCCGCTCC 61.158 72.222 0.00 0.00 0.00 4.70
180 181 3.532155 CCCTCTTCTCCCGCTCCG 61.532 72.222 0.00 0.00 0.00 4.63
181 182 4.214327 CCTCTTCTCCCGCTCCGC 62.214 72.222 0.00 0.00 0.00 5.54
182 183 4.214327 CTCTTCTCCCGCTCCGCC 62.214 72.222 0.00 0.00 0.00 6.13
194 195 4.634703 TCCGCCGCAGCTGGAAAA 62.635 61.111 17.12 0.00 38.28 2.29
195 196 3.669344 CCGCCGCAGCTGGAAAAA 61.669 61.111 17.12 0.00 35.49 1.94
196 197 2.126734 CGCCGCAGCTGGAAAAAG 60.127 61.111 17.12 0.00 36.60 2.27
197 198 2.259511 GCCGCAGCTGGAAAAAGG 59.740 61.111 17.12 0.00 35.50 3.11
198 199 2.268076 GCCGCAGCTGGAAAAAGGA 61.268 57.895 17.12 0.00 35.50 3.36
199 200 1.805428 GCCGCAGCTGGAAAAAGGAA 61.805 55.000 17.12 0.00 35.50 3.36
200 201 0.242017 CCGCAGCTGGAAAAAGGAAG 59.758 55.000 17.12 0.00 0.00 3.46
201 202 0.387750 CGCAGCTGGAAAAAGGAAGC 60.388 55.000 17.12 0.00 35.86 3.86
202 203 0.387750 GCAGCTGGAAAAAGGAAGCG 60.388 55.000 17.12 0.00 40.63 4.68
203 204 0.242017 CAGCTGGAAAAAGGAAGCGG 59.758 55.000 5.57 0.00 40.63 5.52
204 205 0.178990 AGCTGGAAAAAGGAAGCGGT 60.179 50.000 0.00 0.00 40.63 5.68
205 206 0.241213 GCTGGAAAAAGGAAGCGGTC 59.759 55.000 0.00 0.00 0.00 4.79
206 207 1.897560 CTGGAAAAAGGAAGCGGTCT 58.102 50.000 0.00 0.00 0.00 3.85
207 208 1.537202 CTGGAAAAAGGAAGCGGTCTG 59.463 52.381 0.00 0.00 0.00 3.51
208 209 0.881796 GGAAAAAGGAAGCGGTCTGG 59.118 55.000 0.00 0.00 0.00 3.86
209 210 1.544759 GGAAAAAGGAAGCGGTCTGGA 60.545 52.381 0.00 0.00 0.00 3.86
210 211 1.535896 GAAAAAGGAAGCGGTCTGGAC 59.464 52.381 0.00 0.00 0.00 4.02
211 212 0.472471 AAAAGGAAGCGGTCTGGACA 59.528 50.000 3.10 0.00 0.00 4.02
212 213 0.472471 AAAGGAAGCGGTCTGGACAA 59.528 50.000 3.10 0.00 0.00 3.18
213 214 0.035458 AAGGAAGCGGTCTGGACAAG 59.965 55.000 3.10 0.00 0.00 3.16
214 215 0.832135 AGGAAGCGGTCTGGACAAGA 60.832 55.000 3.10 0.00 0.00 3.02
215 216 0.390472 GGAAGCGGTCTGGACAAGAG 60.390 60.000 3.10 0.00 34.84 2.85
216 217 0.390472 GAAGCGGTCTGGACAAGAGG 60.390 60.000 3.10 0.00 34.84 3.69
217 218 2.435059 GCGGTCTGGACAAGAGGC 60.435 66.667 3.10 0.00 34.84 4.70
218 219 3.059982 CGGTCTGGACAAGAGGCA 58.940 61.111 3.10 0.00 34.84 4.75
219 220 1.079543 CGGTCTGGACAAGAGGCAG 60.080 63.158 3.10 0.00 34.84 4.85
220 221 1.298014 GGTCTGGACAAGAGGCAGG 59.702 63.158 3.10 0.00 34.84 4.85
221 222 1.298014 GTCTGGACAAGAGGCAGGG 59.702 63.158 0.00 0.00 34.84 4.45
222 223 1.920325 TCTGGACAAGAGGCAGGGG 60.920 63.158 0.00 0.00 0.00 4.79
223 224 2.121963 TGGACAAGAGGCAGGGGT 60.122 61.111 0.00 0.00 0.00 4.95
224 225 2.190488 CTGGACAAGAGGCAGGGGTC 62.190 65.000 0.00 0.00 0.00 4.46
225 226 1.920835 GGACAAGAGGCAGGGGTCT 60.921 63.158 0.00 0.00 0.00 3.85
226 227 1.492993 GGACAAGAGGCAGGGGTCTT 61.493 60.000 0.00 0.00 33.09 3.01
227 228 0.402121 GACAAGAGGCAGGGGTCTTT 59.598 55.000 0.00 0.00 30.31 2.52
228 229 0.853530 ACAAGAGGCAGGGGTCTTTT 59.146 50.000 0.00 0.00 30.31 2.27
229 230 1.217942 ACAAGAGGCAGGGGTCTTTTT 59.782 47.619 0.00 0.00 30.31 1.94
230 231 1.615392 CAAGAGGCAGGGGTCTTTTTG 59.385 52.381 0.00 0.00 30.31 2.44
231 232 0.853530 AGAGGCAGGGGTCTTTTTGT 59.146 50.000 0.00 0.00 0.00 2.83
232 233 2.062636 AGAGGCAGGGGTCTTTTTGTA 58.937 47.619 0.00 0.00 0.00 2.41
233 234 2.445525 AGAGGCAGGGGTCTTTTTGTAA 59.554 45.455 0.00 0.00 0.00 2.41
234 235 3.117284 AGAGGCAGGGGTCTTTTTGTAAA 60.117 43.478 0.00 0.00 0.00 2.01
235 236 3.639561 GAGGCAGGGGTCTTTTTGTAAAA 59.360 43.478 0.00 0.00 0.00 1.52
236 237 4.034410 AGGCAGGGGTCTTTTTGTAAAAA 58.966 39.130 2.89 2.89 36.53 1.94
268 269 5.799827 TTTTTGACATCCAGTAAAAGGGG 57.200 39.130 0.00 0.00 32.17 4.79
269 270 3.449746 TTGACATCCAGTAAAAGGGGG 57.550 47.619 0.00 0.00 0.00 5.40
270 271 2.354328 TGACATCCAGTAAAAGGGGGT 58.646 47.619 0.00 0.00 0.00 4.95
271 272 2.719705 TGACATCCAGTAAAAGGGGGTT 59.280 45.455 0.00 0.00 0.00 4.11
272 273 3.089284 GACATCCAGTAAAAGGGGGTTG 58.911 50.000 0.00 0.00 0.00 3.77
273 274 1.824852 CATCCAGTAAAAGGGGGTTGC 59.175 52.381 0.00 0.00 0.00 4.17
274 275 0.250989 TCCAGTAAAAGGGGGTTGCG 60.251 55.000 0.00 0.00 0.00 4.85
275 276 1.248101 CCAGTAAAAGGGGGTTGCGG 61.248 60.000 0.00 0.00 0.00 5.69
276 277 1.076014 AGTAAAAGGGGGTTGCGGG 59.924 57.895 0.00 0.00 0.00 6.13
277 278 1.228644 GTAAAAGGGGGTTGCGGGT 60.229 57.895 0.00 0.00 0.00 5.28
278 279 0.828762 GTAAAAGGGGGTTGCGGGTT 60.829 55.000 0.00 0.00 0.00 4.11
279 280 0.540133 TAAAAGGGGGTTGCGGGTTC 60.540 55.000 0.00 0.00 0.00 3.62
280 281 2.591193 AAAAGGGGGTTGCGGGTTCA 62.591 55.000 0.00 0.00 0.00 3.18
281 282 2.591193 AAAGGGGGTTGCGGGTTCAA 62.591 55.000 0.00 0.00 0.00 2.69
282 283 2.522193 GGGGGTTGCGGGTTCAAA 60.522 61.111 0.00 0.00 0.00 2.69
283 284 2.134933 GGGGGTTGCGGGTTCAAAA 61.135 57.895 0.00 0.00 0.00 2.44
284 285 1.687297 GGGGGTTGCGGGTTCAAAAA 61.687 55.000 0.00 0.00 0.00 1.94
285 286 0.531090 GGGGTTGCGGGTTCAAAAAC 60.531 55.000 0.00 0.00 34.46 2.43
286 287 0.462375 GGGTTGCGGGTTCAAAAACT 59.538 50.000 0.00 0.00 35.61 2.66
287 288 1.566404 GGTTGCGGGTTCAAAAACTG 58.434 50.000 0.00 0.00 35.61 3.16
288 289 1.135333 GGTTGCGGGTTCAAAAACTGA 59.865 47.619 0.00 0.00 35.61 3.41
289 290 2.417515 GGTTGCGGGTTCAAAAACTGAA 60.418 45.455 0.00 0.00 41.93 3.02
290 291 3.254892 GTTGCGGGTTCAAAAACTGAAA 58.745 40.909 0.00 0.00 45.67 2.69
291 292 3.594603 TGCGGGTTCAAAAACTGAAAA 57.405 38.095 0.00 0.00 45.67 2.29
292 293 3.516615 TGCGGGTTCAAAAACTGAAAAG 58.483 40.909 0.00 0.00 45.67 2.27
293 294 2.284150 GCGGGTTCAAAAACTGAAAAGC 59.716 45.455 0.00 0.00 45.67 3.51
294 295 3.516615 CGGGTTCAAAAACTGAAAAGCA 58.483 40.909 0.00 0.00 45.67 3.91
295 296 3.929610 CGGGTTCAAAAACTGAAAAGCAA 59.070 39.130 0.00 0.00 45.67 3.91
296 297 4.390297 CGGGTTCAAAAACTGAAAAGCAAA 59.610 37.500 0.00 0.00 45.67 3.68
297 298 5.106908 CGGGTTCAAAAACTGAAAAGCAAAA 60.107 36.000 0.00 0.00 45.67 2.44
298 299 6.314018 GGGTTCAAAAACTGAAAAGCAAAAG 58.686 36.000 0.00 0.00 45.67 2.27
299 300 6.314018 GGTTCAAAAACTGAAAAGCAAAAGG 58.686 36.000 0.00 0.00 45.67 3.11
300 301 6.314018 GTTCAAAAACTGAAAAGCAAAAGGG 58.686 36.000 0.00 0.00 45.67 3.95
301 302 5.555966 TCAAAAACTGAAAAGCAAAAGGGT 58.444 33.333 0.00 0.00 0.00 4.34
302 303 6.000840 TCAAAAACTGAAAAGCAAAAGGGTT 58.999 32.000 0.00 0.00 39.32 4.11
327 328 3.575965 AAAAAGGCCACGATGATGAAC 57.424 42.857 5.01 0.00 0.00 3.18
328 329 1.463674 AAAGGCCACGATGATGAACC 58.536 50.000 5.01 0.00 0.00 3.62
329 330 0.394352 AAGGCCACGATGATGAACCC 60.394 55.000 5.01 0.00 0.00 4.11
330 331 2.180204 GGCCACGATGATGAACCCG 61.180 63.158 0.00 0.00 0.00 5.28
331 332 1.153449 GCCACGATGATGAACCCGA 60.153 57.895 0.00 0.00 0.00 5.14
332 333 1.429148 GCCACGATGATGAACCCGAC 61.429 60.000 0.00 0.00 0.00 4.79
333 334 0.108377 CCACGATGATGAACCCGACA 60.108 55.000 0.00 0.00 0.00 4.35
334 335 1.674519 CCACGATGATGAACCCGACAA 60.675 52.381 0.00 0.00 0.00 3.18
335 336 2.073056 CACGATGATGAACCCGACAAA 58.927 47.619 0.00 0.00 0.00 2.83
336 337 2.073816 ACGATGATGAACCCGACAAAC 58.926 47.619 0.00 0.00 0.00 2.93
337 338 2.289444 ACGATGATGAACCCGACAAACT 60.289 45.455 0.00 0.00 0.00 2.66
338 339 2.348666 CGATGATGAACCCGACAAACTC 59.651 50.000 0.00 0.00 0.00 3.01
339 340 2.920724 TGATGAACCCGACAAACTCA 57.079 45.000 0.00 0.00 0.00 3.41
340 341 3.201353 TGATGAACCCGACAAACTCAA 57.799 42.857 0.00 0.00 0.00 3.02
341 342 3.750371 TGATGAACCCGACAAACTCAAT 58.250 40.909 0.00 0.00 0.00 2.57
342 343 3.501828 TGATGAACCCGACAAACTCAATG 59.498 43.478 0.00 0.00 0.00 2.82
343 344 1.606668 TGAACCCGACAAACTCAATGC 59.393 47.619 0.00 0.00 0.00 3.56
344 345 0.591170 AACCCGACAAACTCAATGCG 59.409 50.000 0.00 0.00 0.00 4.73
345 346 0.534203 ACCCGACAAACTCAATGCGT 60.534 50.000 0.00 0.00 0.00 5.24
346 347 0.110238 CCCGACAAACTCAATGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
347 348 0.865111 CCGACAAACTCAATGCGTGA 59.135 50.000 0.00 0.00 34.17 4.35
348 349 1.464608 CCGACAAACTCAATGCGTGAT 59.535 47.619 0.00 0.00 35.07 3.06
349 350 2.095768 CCGACAAACTCAATGCGTGATT 60.096 45.455 0.00 0.00 35.07 2.57
350 351 3.554524 CGACAAACTCAATGCGTGATTT 58.445 40.909 0.00 0.00 35.07 2.17
351 352 4.377943 CCGACAAACTCAATGCGTGATTTA 60.378 41.667 0.00 0.00 35.07 1.40
352 353 5.323900 CGACAAACTCAATGCGTGATTTAT 58.676 37.500 0.00 0.00 35.07 1.40
353 354 5.794945 CGACAAACTCAATGCGTGATTTATT 59.205 36.000 0.00 0.00 35.07 1.40
354 355 6.958752 CGACAAACTCAATGCGTGATTTATTA 59.041 34.615 0.00 0.00 35.07 0.98
355 356 7.639850 CGACAAACTCAATGCGTGATTTATTAT 59.360 33.333 0.00 0.00 35.07 1.28
356 357 9.289303 GACAAACTCAATGCGTGATTTATTATT 57.711 29.630 0.00 0.00 35.07 1.40
380 381 6.655078 ATTAGGAAAGATGTGCAAAAGTGT 57.345 33.333 0.00 0.00 0.00 3.55
381 382 7.759489 ATTAGGAAAGATGTGCAAAAGTGTA 57.241 32.000 0.00 0.00 0.00 2.90
382 383 5.438761 AGGAAAGATGTGCAAAAGTGTAC 57.561 39.130 0.00 0.00 40.49 2.90
383 384 5.133221 AGGAAAGATGTGCAAAAGTGTACT 58.867 37.500 0.00 0.00 40.69 2.73
384 385 5.009010 AGGAAAGATGTGCAAAAGTGTACTG 59.991 40.000 0.00 0.00 40.69 2.74
385 386 5.008613 GGAAAGATGTGCAAAAGTGTACTGA 59.991 40.000 0.00 0.00 40.69 3.41
386 387 6.449635 AAAGATGTGCAAAAGTGTACTGAA 57.550 33.333 0.00 0.00 40.69 3.02
387 388 6.449635 AAGATGTGCAAAAGTGTACTGAAA 57.550 33.333 0.00 0.00 40.69 2.69
388 389 6.639632 AGATGTGCAAAAGTGTACTGAAAT 57.360 33.333 0.00 0.00 40.69 2.17
389 390 6.672147 AGATGTGCAAAAGTGTACTGAAATC 58.328 36.000 0.00 0.00 40.69 2.17
390 391 5.181690 TGTGCAAAAGTGTACTGAAATCC 57.818 39.130 0.00 0.00 40.69 3.01
391 392 4.642437 TGTGCAAAAGTGTACTGAAATCCA 59.358 37.500 0.00 0.00 40.69 3.41
392 393 5.301551 TGTGCAAAAGTGTACTGAAATCCAT 59.698 36.000 0.00 0.00 40.69 3.41
393 394 6.183360 TGTGCAAAAGTGTACTGAAATCCATT 60.183 34.615 0.00 0.00 40.69 3.16
394 395 6.701400 GTGCAAAAGTGTACTGAAATCCATTT 59.299 34.615 0.00 0.00 37.39 2.32
395 396 7.224557 GTGCAAAAGTGTACTGAAATCCATTTT 59.775 33.333 0.00 0.00 37.39 1.82
396 397 7.768120 TGCAAAAGTGTACTGAAATCCATTTTT 59.232 29.630 0.00 0.00 30.09 1.94
442 443 2.467826 GCCTGGCATTCGTGAGAGC 61.468 63.158 15.17 0.00 43.69 4.09
445 446 3.805267 GGCATTCGTGAGAGCCTG 58.195 61.111 7.22 0.00 45.21 4.85
446 447 1.219124 GGCATTCGTGAGAGCCTGA 59.781 57.895 7.22 0.00 45.21 3.86
449 450 1.802136 GCATTCGTGAGAGCCTGAGAG 60.802 57.143 0.00 0.00 43.69 3.20
450 451 1.110442 ATTCGTGAGAGCCTGAGAGG 58.890 55.000 0.00 0.00 43.69 3.69
451 452 0.251386 TTCGTGAGAGCCTGAGAGGT 60.251 55.000 0.00 0.00 43.69 3.85
452 453 0.618981 TCGTGAGAGCCTGAGAGGTA 59.381 55.000 0.00 0.00 34.04 3.08
453 454 0.736053 CGTGAGAGCCTGAGAGGTAC 59.264 60.000 0.00 0.00 37.80 3.34
454 455 4.009642 TCGTGAGAGCCTGAGAGGTACT 62.010 54.545 0.00 0.00 37.06 2.73
455 456 1.748493 GTGAGAGCCTGAGAGGTACTG 59.252 57.143 0.00 0.00 41.55 2.74
457 458 2.243478 TGAGAGCCTGAGAGGTACTGAT 59.757 50.000 0.00 0.00 41.55 2.90
458 459 3.459969 TGAGAGCCTGAGAGGTACTGATA 59.540 47.826 0.00 0.00 41.55 2.15
459 460 4.079730 TGAGAGCCTGAGAGGTACTGATAA 60.080 45.833 0.00 0.00 41.55 1.75
460 461 5.073437 AGAGCCTGAGAGGTACTGATAAT 57.927 43.478 0.00 0.00 41.55 1.28
463 464 5.706447 AGCCTGAGAGGTACTGATAATACA 58.294 41.667 0.00 0.00 41.55 2.29
466 467 5.047660 CCTGAGAGGTACTGATAATACAGGC 60.048 48.000 0.00 0.00 41.55 4.85
468 469 4.816126 AGAGGTACTGATAATACAGGCCA 58.184 43.478 5.01 0.00 41.55 5.36
469 470 5.407049 AGAGGTACTGATAATACAGGCCAT 58.593 41.667 5.01 0.00 41.55 4.40
470 471 5.846714 AGAGGTACTGATAATACAGGCCATT 59.153 40.000 5.01 0.00 41.55 3.16
471 472 6.014156 AGAGGTACTGATAATACAGGCCATTC 60.014 42.308 5.01 0.00 41.55 2.67
472 473 4.929808 GGTACTGATAATACAGGCCATTCG 59.070 45.833 5.01 0.00 41.59 3.34
473 474 4.955811 ACTGATAATACAGGCCATTCGA 57.044 40.909 5.01 0.00 41.59 3.71
474 475 4.887748 ACTGATAATACAGGCCATTCGAG 58.112 43.478 5.01 0.00 41.59 4.04
496 497 6.064846 AGCGTCATAAATTAATGAGCCTTG 57.935 37.500 0.00 0.00 36.57 3.61
513 514 2.231235 CCTTGTCAATTTGGTAGCACCC 59.769 50.000 0.00 0.00 37.50 4.61
525 526 6.630203 TTGGTAGCACCCTTTCTCTAATAA 57.370 37.500 0.00 0.00 37.50 1.40
526 527 6.235231 TGGTAGCACCCTTTCTCTAATAAG 57.765 41.667 0.00 0.00 37.50 1.73
527 528 5.962031 TGGTAGCACCCTTTCTCTAATAAGA 59.038 40.000 0.00 0.00 37.50 2.10
528 529 6.615726 TGGTAGCACCCTTTCTCTAATAAGAT 59.384 38.462 0.00 0.00 37.50 2.40
532 533 8.497910 AGCACCCTTTCTCTAATAAGATGATA 57.502 34.615 0.00 0.00 0.00 2.15
533 534 8.592809 AGCACCCTTTCTCTAATAAGATGATAG 58.407 37.037 0.00 0.00 0.00 2.08
608 610 3.416382 CCGCGTGTGTAAACCGGG 61.416 66.667 6.32 0.00 33.13 5.73
609 611 4.079748 CGCGTGTGTAAACCGGGC 62.080 66.667 6.32 0.00 0.00 6.13
639 641 2.345244 CACTCCACCGCTTGCTCT 59.655 61.111 0.00 0.00 0.00 4.09
640 642 1.739562 CACTCCACCGCTTGCTCTC 60.740 63.158 0.00 0.00 0.00 3.20
641 643 2.125350 CTCCACCGCTTGCTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
642 644 2.922503 TCCACCGCTTGCTCTCCA 60.923 61.111 0.00 0.00 0.00 3.86
643 645 2.743928 CCACCGCTTGCTCTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
705 707 3.489355 ACAAAAGCTGTCATCACCATGA 58.511 40.909 0.00 0.00 36.62 3.07
821 824 3.377172 ACACGCTGCCCAATTTATTACTC 59.623 43.478 0.00 0.00 0.00 2.59
824 827 4.141574 ACGCTGCCCAATTTATTACTCCTA 60.142 41.667 0.00 0.00 0.00 2.94
827 830 5.470437 GCTGCCCAATTTATTACTCCTACTC 59.530 44.000 0.00 0.00 0.00 2.59
828 831 5.937111 TGCCCAATTTATTACTCCTACTCC 58.063 41.667 0.00 0.00 0.00 3.85
829 832 5.163131 TGCCCAATTTATTACTCCTACTCCC 60.163 44.000 0.00 0.00 0.00 4.30
841 848 1.025812 CTACTCCCAGAGTGGTAGCG 58.974 60.000 7.51 0.00 43.30 4.26
847 854 2.045242 AGAGTGGTAGCGCTCCGA 60.045 61.111 27.24 0.00 32.47 4.55
848 855 2.115911 AGAGTGGTAGCGCTCCGAG 61.116 63.158 27.24 0.00 32.47 4.63
849 856 3.127352 GAGTGGTAGCGCTCCGAGG 62.127 68.421 22.07 0.00 0.00 4.63
850 857 3.138798 GTGGTAGCGCTCCGAGGA 61.139 66.667 16.34 0.00 0.00 3.71
874 886 1.220206 CTCCTGGCGAACAGCTCAT 59.780 57.895 2.36 0.00 46.14 2.90
1195 1213 2.282958 TCGCCTCGTGGGACTTCT 60.283 61.111 5.54 0.00 37.23 2.85
1369 1387 3.316573 CTCTCCCTCCGTGGCAACC 62.317 68.421 0.00 0.00 0.00 3.77
2167 2188 0.462225 CAGTGAGCTGAGGCAGATGG 60.462 60.000 0.00 0.00 45.28 3.51
2202 2223 2.045926 GTGAGCCTGGCGGACAAT 60.046 61.111 13.96 0.00 0.00 2.71
2211 2232 1.444895 GGCGGACAATTGCTTGCTG 60.445 57.895 5.05 0.00 35.69 4.41
2286 2307 1.671054 ATGTCCCAAGTGCGAACCG 60.671 57.895 0.00 0.00 0.00 4.44
2333 2357 9.731819 ATAACGCATTCATATCGTATACCTTAG 57.268 33.333 0.00 0.00 35.18 2.18
2403 2445 0.452784 GTAGCTTTGCTTGAACGCGG 60.453 55.000 12.47 0.00 40.44 6.46
2404 2446 0.882927 TAGCTTTGCTTGAACGCGGT 60.883 50.000 12.47 1.91 40.44 5.68
2407 2449 3.477224 TTTGCTTGAACGCGGTGGC 62.477 57.895 12.47 8.83 0.00 5.01
2409 2451 3.737172 GCTTGAACGCGGTGGCAT 61.737 61.111 12.47 0.00 39.92 4.40
2410 2452 2.395360 GCTTGAACGCGGTGGCATA 61.395 57.895 12.47 0.00 39.92 3.14
2411 2453 1.714899 GCTTGAACGCGGTGGCATAT 61.715 55.000 12.47 0.00 39.92 1.78
2412 2454 1.577468 CTTGAACGCGGTGGCATATA 58.423 50.000 12.47 0.00 39.92 0.86
2413 2455 1.937223 CTTGAACGCGGTGGCATATAA 59.063 47.619 12.47 0.00 39.92 0.98
2414 2456 1.577468 TGAACGCGGTGGCATATAAG 58.423 50.000 12.47 0.00 39.92 1.73
2415 2457 1.137282 TGAACGCGGTGGCATATAAGA 59.863 47.619 12.47 0.00 39.92 2.10
2416 2458 2.224185 TGAACGCGGTGGCATATAAGAT 60.224 45.455 12.47 0.00 39.92 2.40
2417 2459 2.543777 ACGCGGTGGCATATAAGATT 57.456 45.000 12.47 0.00 39.92 2.40
2418 2460 2.846193 ACGCGGTGGCATATAAGATTT 58.154 42.857 12.47 0.00 39.92 2.17
2419 2461 3.211045 ACGCGGTGGCATATAAGATTTT 58.789 40.909 12.47 0.00 39.92 1.82
2420 2462 4.382291 ACGCGGTGGCATATAAGATTTTA 58.618 39.130 12.47 0.00 39.92 1.52
2421 2463 5.001232 ACGCGGTGGCATATAAGATTTTAT 58.999 37.500 12.47 0.00 39.92 1.40
2422 2464 5.472137 ACGCGGTGGCATATAAGATTTTATT 59.528 36.000 12.47 0.00 39.92 1.40
2423 2465 6.016610 ACGCGGTGGCATATAAGATTTTATTT 60.017 34.615 12.47 0.00 39.92 1.40
2424 2466 6.861055 CGCGGTGGCATATAAGATTTTATTTT 59.139 34.615 0.00 0.00 39.92 1.82
2425 2467 8.018520 CGCGGTGGCATATAAGATTTTATTTTA 58.981 33.333 0.00 0.00 39.92 1.52
2426 2468 9.855021 GCGGTGGCATATAAGATTTTATTTTAT 57.145 29.630 0.00 0.00 39.62 1.40
2472 2514 1.667236 TCCCGATGCTGCATTAACAG 58.333 50.000 17.36 6.34 40.80 3.16
2475 2517 2.009051 CCGATGCTGCATTAACAGTGA 58.991 47.619 17.36 0.00 39.96 3.41
2476 2518 2.419673 CCGATGCTGCATTAACAGTGAA 59.580 45.455 17.36 0.00 39.96 3.18
2477 2519 3.119884 CCGATGCTGCATTAACAGTGAAA 60.120 43.478 17.36 0.00 39.96 2.69
2548 2590 2.097110 ACACACTGGTCCCTGTCTTA 57.903 50.000 0.00 0.00 0.00 2.10
2904 2946 3.800685 CTTCACCACCACGGCGACA 62.801 63.158 16.62 0.00 39.03 4.35
3029 3071 2.292569 GGCTATGCATGTGAATCCAGTG 59.707 50.000 10.16 0.00 0.00 3.66
3063 3105 3.815401 AGTGGATTGTTGAAGTACTGTGC 59.185 43.478 0.00 0.00 0.00 4.57
3064 3106 3.815401 GTGGATTGTTGAAGTACTGTGCT 59.185 43.478 0.00 0.00 0.00 4.40
3065 3107 4.994852 GTGGATTGTTGAAGTACTGTGCTA 59.005 41.667 0.00 0.00 0.00 3.49
3066 3108 4.994852 TGGATTGTTGAAGTACTGTGCTAC 59.005 41.667 0.00 0.00 0.00 3.58
3067 3109 5.221641 TGGATTGTTGAAGTACTGTGCTACT 60.222 40.000 0.00 0.00 0.00 2.57
3068 3110 5.348997 GGATTGTTGAAGTACTGTGCTACTC 59.651 44.000 0.00 0.00 0.00 2.59
3069 3111 4.252971 TGTTGAAGTACTGTGCTACTCC 57.747 45.455 0.00 0.00 0.00 3.85
3070 3112 3.006537 TGTTGAAGTACTGTGCTACTCCC 59.993 47.826 0.00 0.00 0.00 4.30
3071 3113 3.170991 TGAAGTACTGTGCTACTCCCT 57.829 47.619 0.00 0.00 0.00 4.20
3072 3114 3.090037 TGAAGTACTGTGCTACTCCCTC 58.910 50.000 0.00 0.00 0.00 4.30
3073 3115 2.146920 AGTACTGTGCTACTCCCTCC 57.853 55.000 0.00 0.00 0.00 4.30
3074 3116 0.739561 GTACTGTGCTACTCCCTCCG 59.260 60.000 0.00 0.00 0.00 4.63
3075 3117 0.330604 TACTGTGCTACTCCCTCCGT 59.669 55.000 0.00 0.00 0.00 4.69
3076 3118 0.966370 ACTGTGCTACTCCCTCCGTC 60.966 60.000 0.00 0.00 0.00 4.79
3077 3119 1.668101 CTGTGCTACTCCCTCCGTCC 61.668 65.000 0.00 0.00 0.00 4.79
3078 3120 2.043248 TGCTACTCCCTCCGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
3079 3121 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
3080 3122 2.424733 GCTACTCCCTCCGTCCCAC 61.425 68.421 0.00 0.00 0.00 4.61
3081 3123 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3082 3124 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3083 3125 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3084 3126 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
3085 3127 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
3086 3128 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
3087 3129 2.299297 CTCCCTCCGTCCCACAATATAC 59.701 54.545 0.00 0.00 0.00 1.47
3088 3130 2.090943 TCCCTCCGTCCCACAATATACT 60.091 50.000 0.00 0.00 0.00 2.12
3089 3131 3.140707 TCCCTCCGTCCCACAATATACTA 59.859 47.826 0.00 0.00 0.00 1.82
3090 3132 3.510360 CCCTCCGTCCCACAATATACTAG 59.490 52.174 0.00 0.00 0.00 2.57
3091 3133 4.150359 CCTCCGTCCCACAATATACTAGT 58.850 47.826 0.00 0.00 0.00 2.57
3092 3134 4.022242 CCTCCGTCCCACAATATACTAGTG 60.022 50.000 5.39 0.00 0.00 2.74
3093 3135 4.539726 TCCGTCCCACAATATACTAGTGT 58.460 43.478 5.39 0.39 37.49 3.55
3094 3136 4.581824 TCCGTCCCACAATATACTAGTGTC 59.418 45.833 5.39 0.00 34.37 3.67
3095 3137 4.340097 CCGTCCCACAATATACTAGTGTCA 59.660 45.833 5.39 0.00 34.37 3.58
3096 3138 5.163488 CCGTCCCACAATATACTAGTGTCAA 60.163 44.000 5.39 0.00 34.37 3.18
3097 3139 6.334989 CGTCCCACAATATACTAGTGTCAAA 58.665 40.000 5.39 0.00 34.37 2.69
3098 3140 6.814644 CGTCCCACAATATACTAGTGTCAAAA 59.185 38.462 5.39 0.00 34.37 2.44
3099 3141 7.332430 CGTCCCACAATATACTAGTGTCAAAAA 59.668 37.037 5.39 0.00 34.37 1.94
3100 3142 8.448615 GTCCCACAATATACTAGTGTCAAAAAC 58.551 37.037 5.39 0.00 34.37 2.43
3101 3143 7.332430 TCCCACAATATACTAGTGTCAAAAACG 59.668 37.037 5.39 0.00 34.37 3.60
3102 3144 6.959311 CCACAATATACTAGTGTCAAAAACGC 59.041 38.462 5.39 0.00 34.37 4.84
3104 3146 8.227791 CACAATATACTAGTGTCAAAAACGCTT 58.772 33.333 5.39 0.00 46.62 4.68
3105 3147 8.780249 ACAATATACTAGTGTCAAAAACGCTTT 58.220 29.630 5.39 0.00 46.62 3.51
3106 3148 9.607285 CAATATACTAGTGTCAAAAACGCTTTT 57.393 29.630 5.39 0.00 46.62 2.27
3112 3154 9.607285 ACTAGTGTCAAAAACGCTTTTATATTG 57.393 29.630 0.00 0.00 46.62 1.90
3113 3155 9.607285 CTAGTGTCAAAAACGCTTTTATATTGT 57.393 29.630 0.00 0.00 46.62 2.71
3114 3156 8.280909 AGTGTCAAAAACGCTTTTATATTGTG 57.719 30.769 0.00 0.00 46.62 3.33
3115 3157 7.381139 AGTGTCAAAAACGCTTTTATATTGTGG 59.619 33.333 0.00 0.00 46.62 4.17
3116 3158 6.642950 TGTCAAAAACGCTTTTATATTGTGGG 59.357 34.615 0.00 0.00 32.85 4.61
3117 3159 6.864165 GTCAAAAACGCTTTTATATTGTGGGA 59.136 34.615 0.00 0.00 32.85 4.37
3118 3160 6.864165 TCAAAAACGCTTTTATATTGTGGGAC 59.136 34.615 0.00 0.00 32.85 4.46
3119 3161 4.609691 AACGCTTTTATATTGTGGGACG 57.390 40.909 0.00 0.00 0.00 4.79
3120 3162 2.940410 ACGCTTTTATATTGTGGGACGG 59.060 45.455 0.00 0.00 0.00 4.79
3121 3163 3.199677 CGCTTTTATATTGTGGGACGGA 58.800 45.455 0.00 0.00 0.00 4.69
3122 3164 3.247648 CGCTTTTATATTGTGGGACGGAG 59.752 47.826 0.00 0.00 0.00 4.63
3123 3165 3.564225 GCTTTTATATTGTGGGACGGAGG 59.436 47.826 0.00 0.00 0.00 4.30
3124 3166 3.849563 TTTATATTGTGGGACGGAGGG 57.150 47.619 0.00 0.00 0.00 4.30
3125 3167 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3126 3168 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3144 3186 7.565680 GGAGGGAGTAGTTCAGATGATAAAAA 58.434 38.462 0.00 0.00 0.00 1.94
3164 3206 2.214376 ATCTCGTGGGGCATCAAAAA 57.786 45.000 0.00 0.00 0.00 1.94
3168 3210 3.323403 TCTCGTGGGGCATCAAAAATTTT 59.677 39.130 0.00 0.00 0.00 1.82
3176 3218 5.312895 GGGCATCAAAAATTTTGGTTACCT 58.687 37.500 17.21 0.00 0.00 3.08
3193 3238 6.126883 TGGTTACCTTGGTCGAAAGATATCAT 60.127 38.462 5.32 0.00 45.19 2.45
3200 3245 4.571984 TGGTCGAAAGATATCATGCAGTTG 59.428 41.667 5.32 0.00 45.19 3.16
3202 3247 3.561310 TCGAAAGATATCATGCAGTTGCC 59.439 43.478 5.32 0.00 35.93 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.152943 TCGATCAGGAGGACGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
1 2 2.326222 CTCGATCAGGAGGACGAGG 58.674 63.158 0.00 0.00 45.22 4.63
4 5 2.725008 GGCTCGATCAGGAGGACG 59.275 66.667 0.00 0.00 34.56 4.79
5 6 1.791103 CTCGGCTCGATCAGGAGGAC 61.791 65.000 0.00 0.00 34.61 3.85
7 8 3.038280 CTCGGCTCGATCAGGAGG 58.962 66.667 0.00 0.00 34.61 4.30
8 9 2.334653 GCTCGGCTCGATCAGGAG 59.665 66.667 0.00 3.12 34.61 3.69
10 11 3.531207 TGGCTCGGCTCGATCAGG 61.531 66.667 0.00 0.00 34.61 3.86
11 12 2.279120 GTGGCTCGGCTCGATCAG 60.279 66.667 0.00 0.00 34.61 2.90
13 14 3.157217 ATGGTGGCTCGGCTCGATC 62.157 63.158 0.00 0.00 34.61 3.69
14 15 3.157252 ATGGTGGCTCGGCTCGAT 61.157 61.111 0.00 0.00 34.61 3.59
15 16 4.147449 CATGGTGGCTCGGCTCGA 62.147 66.667 0.00 0.00 0.00 4.04
17 18 3.785859 TCCATGGTGGCTCGGCTC 61.786 66.667 12.58 0.00 37.47 4.70
18 19 4.101448 GTCCATGGTGGCTCGGCT 62.101 66.667 12.58 0.00 37.47 5.52
20 21 4.838152 CCGTCCATGGTGGCTCGG 62.838 72.222 12.58 14.54 43.55 4.63
25 26 2.034066 AACAGCCGTCCATGGTGG 59.966 61.111 12.58 15.92 39.43 4.61
26 27 2.981560 GCAACAGCCGTCCATGGTG 61.982 63.158 12.58 4.55 37.19 4.17
27 28 2.672996 GCAACAGCCGTCCATGGT 60.673 61.111 12.58 0.00 0.00 3.55
28 29 3.803082 CGCAACAGCCGTCCATGG 61.803 66.667 4.97 4.97 0.00 3.66
29 30 3.027170 GACGCAACAGCCGTCCATG 62.027 63.158 2.79 0.00 46.78 3.66
30 31 2.742372 GACGCAACAGCCGTCCAT 60.742 61.111 2.79 0.00 46.78 3.41
50 51 1.442520 CGTTTGCCCGCAGTCAATG 60.443 57.895 0.00 0.00 0.00 2.82
51 52 2.953821 CGTTTGCCCGCAGTCAAT 59.046 55.556 0.00 0.00 0.00 2.57
129 130 4.660938 AAGTTGAGGGGTGGCGCC 62.661 66.667 22.73 22.73 36.67 6.53
130 131 3.056328 GAAGTTGAGGGGTGGCGC 61.056 66.667 0.00 0.00 0.00 6.53
131 132 1.376037 GAGAAGTTGAGGGGTGGCG 60.376 63.158 0.00 0.00 0.00 5.69
132 133 1.002011 GGAGAAGTTGAGGGGTGGC 60.002 63.158 0.00 0.00 0.00 5.01
133 134 0.326264 CAGGAGAAGTTGAGGGGTGG 59.674 60.000 0.00 0.00 0.00 4.61
134 135 0.322008 GCAGGAGAAGTTGAGGGGTG 60.322 60.000 0.00 0.00 0.00 4.61
135 136 1.492993 GGCAGGAGAAGTTGAGGGGT 61.493 60.000 0.00 0.00 0.00 4.95
136 137 1.301293 GGCAGGAGAAGTTGAGGGG 59.699 63.158 0.00 0.00 0.00 4.79
137 138 1.301293 GGGCAGGAGAAGTTGAGGG 59.699 63.158 0.00 0.00 0.00 4.30
138 139 0.401738 TTGGGCAGGAGAAGTTGAGG 59.598 55.000 0.00 0.00 0.00 3.86
139 140 1.528129 GTTGGGCAGGAGAAGTTGAG 58.472 55.000 0.00 0.00 0.00 3.02
140 141 0.110486 GGTTGGGCAGGAGAAGTTGA 59.890 55.000 0.00 0.00 0.00 3.18
141 142 0.895559 GGGTTGGGCAGGAGAAGTTG 60.896 60.000 0.00 0.00 0.00 3.16
142 143 1.460699 GGGTTGGGCAGGAGAAGTT 59.539 57.895 0.00 0.00 0.00 2.66
143 144 2.895424 CGGGTTGGGCAGGAGAAGT 61.895 63.158 0.00 0.00 0.00 3.01
144 145 2.045926 CGGGTTGGGCAGGAGAAG 60.046 66.667 0.00 0.00 0.00 2.85
145 146 4.344865 GCGGGTTGGGCAGGAGAA 62.345 66.667 0.00 0.00 0.00 2.87
153 154 4.426313 GAAGAGGGGCGGGTTGGG 62.426 72.222 0.00 0.00 0.00 4.12
154 155 3.330720 AGAAGAGGGGCGGGTTGG 61.331 66.667 0.00 0.00 0.00 3.77
155 156 2.269241 GAGAAGAGGGGCGGGTTG 59.731 66.667 0.00 0.00 0.00 3.77
156 157 3.009714 GGAGAAGAGGGGCGGGTT 61.010 66.667 0.00 0.00 0.00 4.11
161 162 3.855853 GAGCGGGAGAAGAGGGGC 61.856 72.222 0.00 0.00 0.00 5.80
162 163 3.157949 GGAGCGGGAGAAGAGGGG 61.158 72.222 0.00 0.00 0.00 4.79
163 164 3.532155 CGGAGCGGGAGAAGAGGG 61.532 72.222 0.00 0.00 0.00 4.30
177 178 4.634703 TTTTCCAGCTGCGGCGGA 62.635 61.111 19.96 21.16 44.37 5.54
178 179 3.615536 CTTTTTCCAGCTGCGGCGG 62.616 63.158 18.68 18.68 44.37 6.13
179 180 2.126734 CTTTTTCCAGCTGCGGCG 60.127 61.111 12.87 0.51 44.37 6.46
180 181 1.805428 TTCCTTTTTCCAGCTGCGGC 61.805 55.000 10.33 10.33 39.06 6.53
181 182 0.242017 CTTCCTTTTTCCAGCTGCGG 59.758 55.000 8.66 0.00 0.00 5.69
182 183 0.387750 GCTTCCTTTTTCCAGCTGCG 60.388 55.000 8.66 1.56 0.00 5.18
183 184 0.387750 CGCTTCCTTTTTCCAGCTGC 60.388 55.000 8.66 0.00 0.00 5.25
184 185 0.242017 CCGCTTCCTTTTTCCAGCTG 59.758 55.000 6.78 6.78 0.00 4.24
185 186 0.178990 ACCGCTTCCTTTTTCCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
186 187 0.241213 GACCGCTTCCTTTTTCCAGC 59.759 55.000 0.00 0.00 0.00 4.85
187 188 1.537202 CAGACCGCTTCCTTTTTCCAG 59.463 52.381 0.00 0.00 0.00 3.86
188 189 1.604604 CAGACCGCTTCCTTTTTCCA 58.395 50.000 0.00 0.00 0.00 3.53
189 190 0.881796 CCAGACCGCTTCCTTTTTCC 59.118 55.000 0.00 0.00 0.00 3.13
190 191 1.535896 GTCCAGACCGCTTCCTTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
191 192 1.133915 TGTCCAGACCGCTTCCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
192 193 0.472471 TGTCCAGACCGCTTCCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
193 194 0.472471 TTGTCCAGACCGCTTCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
194 195 0.035458 CTTGTCCAGACCGCTTCCTT 59.965 55.000 0.00 0.00 0.00 3.36
195 196 0.832135 TCTTGTCCAGACCGCTTCCT 60.832 55.000 0.00 0.00 0.00 3.36
196 197 0.390472 CTCTTGTCCAGACCGCTTCC 60.390 60.000 0.00 0.00 0.00 3.46
197 198 0.390472 CCTCTTGTCCAGACCGCTTC 60.390 60.000 0.00 0.00 0.00 3.86
198 199 1.674057 CCTCTTGTCCAGACCGCTT 59.326 57.895 0.00 0.00 0.00 4.68
199 200 2.948720 GCCTCTTGTCCAGACCGCT 61.949 63.158 0.00 0.00 0.00 5.52
200 201 2.435059 GCCTCTTGTCCAGACCGC 60.435 66.667 0.00 0.00 0.00 5.68
201 202 1.079543 CTGCCTCTTGTCCAGACCG 60.080 63.158 0.00 0.00 0.00 4.79
202 203 1.298014 CCTGCCTCTTGTCCAGACC 59.702 63.158 0.00 0.00 0.00 3.85
203 204 1.298014 CCCTGCCTCTTGTCCAGAC 59.702 63.158 0.00 0.00 0.00 3.51
204 205 1.920325 CCCCTGCCTCTTGTCCAGA 60.920 63.158 0.00 0.00 0.00 3.86
205 206 2.190488 GACCCCTGCCTCTTGTCCAG 62.190 65.000 0.00 0.00 0.00 3.86
206 207 2.121963 ACCCCTGCCTCTTGTCCA 60.122 61.111 0.00 0.00 0.00 4.02
207 208 1.492993 AAGACCCCTGCCTCTTGTCC 61.493 60.000 0.00 0.00 0.00 4.02
208 209 0.402121 AAAGACCCCTGCCTCTTGTC 59.598 55.000 0.00 0.00 0.00 3.18
209 210 0.853530 AAAAGACCCCTGCCTCTTGT 59.146 50.000 0.00 0.00 0.00 3.16
210 211 1.615392 CAAAAAGACCCCTGCCTCTTG 59.385 52.381 0.00 0.00 0.00 3.02
211 212 1.217942 ACAAAAAGACCCCTGCCTCTT 59.782 47.619 0.00 0.00 0.00 2.85
212 213 0.853530 ACAAAAAGACCCCTGCCTCT 59.146 50.000 0.00 0.00 0.00 3.69
213 214 2.579410 TACAAAAAGACCCCTGCCTC 57.421 50.000 0.00 0.00 0.00 4.70
214 215 3.322191 TTTACAAAAAGACCCCTGCCT 57.678 42.857 0.00 0.00 0.00 4.75
215 216 4.409718 TTTTTACAAAAAGACCCCTGCC 57.590 40.909 0.00 0.00 33.29 4.85
246 247 4.591072 CCCCCTTTTACTGGATGTCAAAAA 59.409 41.667 0.00 0.00 0.00 1.94
247 248 4.156477 CCCCCTTTTACTGGATGTCAAAA 58.844 43.478 0.00 0.00 0.00 2.44
248 249 3.141272 ACCCCCTTTTACTGGATGTCAAA 59.859 43.478 0.00 0.00 0.00 2.69
249 250 2.719705 ACCCCCTTTTACTGGATGTCAA 59.280 45.455 0.00 0.00 0.00 3.18
250 251 2.354328 ACCCCCTTTTACTGGATGTCA 58.646 47.619 0.00 0.00 0.00 3.58
251 252 3.089284 CAACCCCCTTTTACTGGATGTC 58.911 50.000 0.00 0.00 0.00 3.06
252 253 2.821625 GCAACCCCCTTTTACTGGATGT 60.822 50.000 0.00 0.00 0.00 3.06
253 254 1.824852 GCAACCCCCTTTTACTGGATG 59.175 52.381 0.00 0.00 0.00 3.51
254 255 1.615919 CGCAACCCCCTTTTACTGGAT 60.616 52.381 0.00 0.00 0.00 3.41
255 256 0.250989 CGCAACCCCCTTTTACTGGA 60.251 55.000 0.00 0.00 0.00 3.86
256 257 1.248101 CCGCAACCCCCTTTTACTGG 61.248 60.000 0.00 0.00 0.00 4.00
257 258 1.248101 CCCGCAACCCCCTTTTACTG 61.248 60.000 0.00 0.00 0.00 2.74
258 259 1.076014 CCCGCAACCCCCTTTTACT 59.924 57.895 0.00 0.00 0.00 2.24
259 260 0.828762 AACCCGCAACCCCCTTTTAC 60.829 55.000 0.00 0.00 0.00 2.01
260 261 0.540133 GAACCCGCAACCCCCTTTTA 60.540 55.000 0.00 0.00 0.00 1.52
261 262 1.835267 GAACCCGCAACCCCCTTTT 60.835 57.895 0.00 0.00 0.00 2.27
262 263 2.203582 GAACCCGCAACCCCCTTT 60.204 61.111 0.00 0.00 0.00 3.11
263 264 2.591193 TTTGAACCCGCAACCCCCTT 62.591 55.000 0.00 0.00 0.00 3.95
264 265 2.591193 TTTTGAACCCGCAACCCCCT 62.591 55.000 0.00 0.00 0.00 4.79
265 266 1.687297 TTTTTGAACCCGCAACCCCC 61.687 55.000 0.00 0.00 0.00 5.40
266 267 0.531090 GTTTTTGAACCCGCAACCCC 60.531 55.000 0.00 0.00 0.00 4.95
267 268 0.462375 AGTTTTTGAACCCGCAACCC 59.538 50.000 0.00 0.00 0.00 4.11
268 269 1.135333 TCAGTTTTTGAACCCGCAACC 59.865 47.619 0.00 0.00 31.34 3.77
269 270 2.570442 TCAGTTTTTGAACCCGCAAC 57.430 45.000 0.00 0.00 31.34 4.17
270 271 3.594603 TTTCAGTTTTTGAACCCGCAA 57.405 38.095 0.00 0.00 45.22 4.85
271 272 3.516615 CTTTTCAGTTTTTGAACCCGCA 58.483 40.909 0.00 0.00 45.22 5.69
272 273 2.284150 GCTTTTCAGTTTTTGAACCCGC 59.716 45.455 0.00 0.00 45.22 6.13
273 274 3.516615 TGCTTTTCAGTTTTTGAACCCG 58.483 40.909 0.00 0.00 45.22 5.28
274 275 5.871465 TTTGCTTTTCAGTTTTTGAACCC 57.129 34.783 0.00 0.00 45.22 4.11
275 276 6.314018 CCTTTTGCTTTTCAGTTTTTGAACC 58.686 36.000 0.00 0.00 45.22 3.62
276 277 6.072728 ACCCTTTTGCTTTTCAGTTTTTGAAC 60.073 34.615 0.00 0.00 45.22 3.18
277 278 6.000840 ACCCTTTTGCTTTTCAGTTTTTGAA 58.999 32.000 0.00 0.00 43.92 2.69
278 279 5.555966 ACCCTTTTGCTTTTCAGTTTTTGA 58.444 33.333 0.00 0.00 0.00 2.69
279 280 5.878332 ACCCTTTTGCTTTTCAGTTTTTG 57.122 34.783 0.00 0.00 0.00 2.44
280 281 6.892658 AAACCCTTTTGCTTTTCAGTTTTT 57.107 29.167 0.00 0.00 0.00 1.94
281 282 6.892658 AAAACCCTTTTGCTTTTCAGTTTT 57.107 29.167 0.00 0.00 32.85 2.43
282 283 6.892658 AAAAACCCTTTTGCTTTTCAGTTT 57.107 29.167 0.00 0.00 33.39 2.66
283 284 7.987750 TTAAAAACCCTTTTGCTTTTCAGTT 57.012 28.000 0.00 0.00 35.50 3.16
284 285 7.987750 TTTAAAAACCCTTTTGCTTTTCAGT 57.012 28.000 0.00 0.00 35.50 3.41
307 308 2.231235 GGTTCATCATCGTGGCCTTTTT 59.769 45.455 3.32 0.00 0.00 1.94
308 309 1.818674 GGTTCATCATCGTGGCCTTTT 59.181 47.619 3.32 0.00 0.00 2.27
309 310 1.463674 GGTTCATCATCGTGGCCTTT 58.536 50.000 3.32 0.00 0.00 3.11
310 311 0.394352 GGGTTCATCATCGTGGCCTT 60.394 55.000 3.32 0.00 0.00 4.35
311 312 1.224592 GGGTTCATCATCGTGGCCT 59.775 57.895 3.32 0.00 0.00 5.19
312 313 2.180204 CGGGTTCATCATCGTGGCC 61.180 63.158 0.00 0.00 0.00 5.36
313 314 1.153449 TCGGGTTCATCATCGTGGC 60.153 57.895 0.00 0.00 0.00 5.01
314 315 0.108377 TGTCGGGTTCATCATCGTGG 60.108 55.000 0.00 0.00 0.00 4.94
315 316 1.720805 TTGTCGGGTTCATCATCGTG 58.279 50.000 0.00 0.00 0.00 4.35
316 317 2.073816 GTTTGTCGGGTTCATCATCGT 58.926 47.619 0.00 0.00 0.00 3.73
317 318 2.346803 AGTTTGTCGGGTTCATCATCG 58.653 47.619 0.00 0.00 0.00 3.84
318 319 3.334691 TGAGTTTGTCGGGTTCATCATC 58.665 45.455 0.00 0.00 0.00 2.92
319 320 3.417069 TGAGTTTGTCGGGTTCATCAT 57.583 42.857 0.00 0.00 0.00 2.45
320 321 2.920724 TGAGTTTGTCGGGTTCATCA 57.079 45.000 0.00 0.00 0.00 3.07
321 322 3.670627 GCATTGAGTTTGTCGGGTTCATC 60.671 47.826 0.00 0.00 0.00 2.92
322 323 2.228822 GCATTGAGTTTGTCGGGTTCAT 59.771 45.455 0.00 0.00 0.00 2.57
323 324 1.606668 GCATTGAGTTTGTCGGGTTCA 59.393 47.619 0.00 0.00 0.00 3.18
324 325 1.399727 CGCATTGAGTTTGTCGGGTTC 60.400 52.381 0.00 0.00 0.00 3.62
325 326 0.591170 CGCATTGAGTTTGTCGGGTT 59.409 50.000 0.00 0.00 0.00 4.11
326 327 0.534203 ACGCATTGAGTTTGTCGGGT 60.534 50.000 0.00 0.00 0.00 5.28
327 328 0.110238 CACGCATTGAGTTTGTCGGG 60.110 55.000 0.00 0.00 0.00 5.14
328 329 0.865111 TCACGCATTGAGTTTGTCGG 59.135 50.000 0.00 0.00 0.00 4.79
329 330 2.880822 ATCACGCATTGAGTTTGTCG 57.119 45.000 0.00 0.00 37.77 4.35
330 331 8.841444 ATAATAAATCACGCATTGAGTTTGTC 57.159 30.769 3.63 0.00 39.52 3.18
354 355 8.806146 ACACTTTTGCACATCTTTCCTAATAAT 58.194 29.630 0.00 0.00 0.00 1.28
355 356 8.177119 ACACTTTTGCACATCTTTCCTAATAA 57.823 30.769 0.00 0.00 0.00 1.40
356 357 7.759489 ACACTTTTGCACATCTTTCCTAATA 57.241 32.000 0.00 0.00 0.00 0.98
357 358 6.655078 ACACTTTTGCACATCTTTCCTAAT 57.345 33.333 0.00 0.00 0.00 1.73
358 359 6.770785 AGTACACTTTTGCACATCTTTCCTAA 59.229 34.615 0.00 0.00 0.00 2.69
359 360 6.204688 CAGTACACTTTTGCACATCTTTCCTA 59.795 38.462 0.00 0.00 0.00 2.94
360 361 5.009010 CAGTACACTTTTGCACATCTTTCCT 59.991 40.000 0.00 0.00 0.00 3.36
361 362 5.008613 TCAGTACACTTTTGCACATCTTTCC 59.991 40.000 0.00 0.00 0.00 3.13
362 363 6.060028 TCAGTACACTTTTGCACATCTTTC 57.940 37.500 0.00 0.00 0.00 2.62
363 364 6.449635 TTCAGTACACTTTTGCACATCTTT 57.550 33.333 0.00 0.00 0.00 2.52
364 365 6.449635 TTTCAGTACACTTTTGCACATCTT 57.550 33.333 0.00 0.00 0.00 2.40
365 366 6.294176 GGATTTCAGTACACTTTTGCACATCT 60.294 38.462 0.00 0.00 0.00 2.90
366 367 5.858581 GGATTTCAGTACACTTTTGCACATC 59.141 40.000 0.00 0.00 0.00 3.06
367 368 5.301551 TGGATTTCAGTACACTTTTGCACAT 59.698 36.000 0.00 0.00 0.00 3.21
368 369 4.642437 TGGATTTCAGTACACTTTTGCACA 59.358 37.500 0.00 0.00 0.00 4.57
369 370 5.181690 TGGATTTCAGTACACTTTTGCAC 57.818 39.130 0.00 0.00 0.00 4.57
370 371 6.403866 AATGGATTTCAGTACACTTTTGCA 57.596 33.333 0.00 0.00 0.00 4.08
371 372 7.713764 AAAATGGATTTCAGTACACTTTTGC 57.286 32.000 0.00 0.00 0.00 3.68
402 403 4.694037 GCTAATATGGATTTCGGTACACCC 59.306 45.833 0.00 0.00 0.00 4.61
403 404 4.694037 GGCTAATATGGATTTCGGTACACC 59.306 45.833 0.00 0.00 0.00 4.16
404 405 5.408604 CAGGCTAATATGGATTTCGGTACAC 59.591 44.000 0.00 0.00 0.00 2.90
405 406 5.512404 CCAGGCTAATATGGATTTCGGTACA 60.512 44.000 0.00 0.00 39.02 2.90
410 411 3.411446 TGCCAGGCTAATATGGATTTCG 58.589 45.455 14.15 0.00 39.02 3.46
442 443 5.047660 GCCTGTATTATCAGTACCTCTCAGG 60.048 48.000 0.00 0.00 40.81 3.86
444 445 4.833380 GGCCTGTATTATCAGTACCTCTCA 59.167 45.833 0.00 0.00 34.02 3.27
445 446 4.833380 TGGCCTGTATTATCAGTACCTCTC 59.167 45.833 3.32 0.00 33.62 3.20
446 447 4.816126 TGGCCTGTATTATCAGTACCTCT 58.184 43.478 3.32 0.00 33.62 3.69
449 450 4.929808 CGAATGGCCTGTATTATCAGTACC 59.070 45.833 3.32 0.00 34.02 3.34
450 451 5.779922 TCGAATGGCCTGTATTATCAGTAC 58.220 41.667 3.32 0.00 34.02 2.73
451 452 5.566826 GCTCGAATGGCCTGTATTATCAGTA 60.567 44.000 3.32 0.00 34.02 2.74
452 453 4.800914 GCTCGAATGGCCTGTATTATCAGT 60.801 45.833 3.32 0.00 34.02 3.41
453 454 3.681897 GCTCGAATGGCCTGTATTATCAG 59.318 47.826 3.32 0.00 35.45 2.90
454 455 3.664107 GCTCGAATGGCCTGTATTATCA 58.336 45.455 3.32 0.00 0.00 2.15
455 456 2.668457 CGCTCGAATGGCCTGTATTATC 59.332 50.000 3.32 0.00 0.00 1.75
457 458 1.411246 ACGCTCGAATGGCCTGTATTA 59.589 47.619 3.32 0.00 0.00 0.98
458 459 0.178068 ACGCTCGAATGGCCTGTATT 59.822 50.000 3.32 0.00 0.00 1.89
459 460 0.249489 GACGCTCGAATGGCCTGTAT 60.249 55.000 3.32 0.00 0.00 2.29
460 461 1.141019 GACGCTCGAATGGCCTGTA 59.859 57.895 3.32 0.00 0.00 2.74
463 464 0.464036 TTATGACGCTCGAATGGCCT 59.536 50.000 3.32 0.00 0.00 5.19
466 467 6.887368 TCATTAATTTATGACGCTCGAATGG 58.113 36.000 3.05 0.00 29.82 3.16
468 469 6.347725 GGCTCATTAATTTATGACGCTCGAAT 60.348 38.462 19.05 0.00 33.29 3.34
469 470 5.050363 GGCTCATTAATTTATGACGCTCGAA 60.050 40.000 19.05 0.00 33.29 3.71
470 471 4.447724 GGCTCATTAATTTATGACGCTCGA 59.552 41.667 19.05 0.00 33.29 4.04
471 472 4.449068 AGGCTCATTAATTTATGACGCTCG 59.551 41.667 19.05 7.24 33.29 5.03
472 473 5.931441 AGGCTCATTAATTTATGACGCTC 57.069 39.130 19.05 13.29 33.29 5.03
473 474 5.590259 ACAAGGCTCATTAATTTATGACGCT 59.410 36.000 19.05 9.57 33.29 5.07
474 475 5.821204 ACAAGGCTCATTAATTTATGACGC 58.179 37.500 14.88 14.88 31.51 5.19
496 497 3.826729 AGAAAGGGTGCTACCAAATTGAC 59.173 43.478 0.00 0.00 41.02 3.18
548 549 3.689649 GCGTGAATGGAACTGGAAACTAT 59.310 43.478 0.00 0.00 0.00 2.12
558 559 1.495951 GTGACGGCGTGAATGGAAC 59.504 57.895 21.19 0.00 0.00 3.62
561 562 3.487202 CCGTGACGGCGTGAATGG 61.487 66.667 21.19 16.72 41.17 3.16
599 601 1.467342 GTTCACTCATGCCCGGTTTAC 59.533 52.381 0.00 0.00 0.00 2.01
634 636 2.604912 TTAGAGTGGAGTGGAGAGCA 57.395 50.000 0.00 0.00 0.00 4.26
639 641 4.743057 CACATGATTAGAGTGGAGTGGA 57.257 45.455 0.00 0.00 0.00 4.02
705 707 1.880027 CTTTGTTTAGCGCTGGAAGGT 59.120 47.619 22.90 0.00 0.00 3.50
805 808 5.163131 GGGAGTAGGAGTAATAAATTGGGCA 60.163 44.000 0.00 0.00 0.00 5.36
827 830 2.496817 GAGCGCTACCACTCTGGG 59.503 66.667 11.50 0.00 43.37 4.45
828 831 2.496817 GGAGCGCTACCACTCTGG 59.503 66.667 11.50 0.00 45.02 3.86
829 832 2.103143 CGGAGCGCTACCACTCTG 59.897 66.667 15.60 0.00 33.29 3.35
841 848 1.031029 AGGAGTACGTTCCTCGGAGC 61.031 60.000 2.79 0.00 44.33 4.70
848 855 0.735287 GTTCGCCAGGAGTACGTTCC 60.735 60.000 0.00 0.00 37.52 3.62
849 856 0.038892 TGTTCGCCAGGAGTACGTTC 60.039 55.000 0.00 0.00 0.00 3.95
850 857 0.038526 CTGTTCGCCAGGAGTACGTT 60.039 55.000 0.00 0.00 37.54 3.99
882 894 0.179124 GTCGAGTGAGTGGGATCAGC 60.179 60.000 0.00 0.00 0.00 4.26
971 983 2.168728 TCGATCGAGGAGAAGAGAGACA 59.831 50.000 15.15 0.00 0.00 3.41
1122 1140 3.044305 GCTTTCAGCGACGCCAGT 61.044 61.111 17.79 0.00 0.00 4.00
1159 1177 2.424733 GGCAGGAGTAGGACGGGAC 61.425 68.421 0.00 0.00 0.00 4.46
1324 1342 2.264794 GAAAGGGAGCGAGGCGAA 59.735 61.111 0.00 0.00 0.00 4.70
1462 1480 2.995574 CGGGGTGAAGAGGGACGT 60.996 66.667 0.00 0.00 0.00 4.34
2027 2048 4.719369 GCACGCCTCCGACGAACT 62.719 66.667 0.00 0.00 38.29 3.01
2121 2142 0.684805 CTCCGCAGAGGTAGTTCCCT 60.685 60.000 0.00 0.00 41.99 4.20
2148 2169 0.462225 CCATCTGCCTCAGCTCACTG 60.462 60.000 0.00 0.00 45.95 3.66
2149 2170 0.616964 TCCATCTGCCTCAGCTCACT 60.617 55.000 0.00 0.00 40.80 3.41
2202 2223 1.785041 GCGGACACTTCAGCAAGCAA 61.785 55.000 0.00 0.00 42.10 3.91
2286 2307 7.427214 GTTATCTACAGTATGGAACCTCTCAC 58.573 42.308 0.00 0.00 43.62 3.51
2419 2461 9.911138 GGACCCGTCTTTTGTTAAAATAAAATA 57.089 29.630 0.00 0.00 30.40 1.40
2420 2462 8.422566 TGGACCCGTCTTTTGTTAAAATAAAAT 58.577 29.630 0.00 0.00 30.40 1.82
2421 2463 7.779073 TGGACCCGTCTTTTGTTAAAATAAAA 58.221 30.769 0.00 0.00 0.00 1.52
2422 2464 7.284944 TCTGGACCCGTCTTTTGTTAAAATAAA 59.715 33.333 0.00 0.00 0.00 1.40
2423 2465 6.771749 TCTGGACCCGTCTTTTGTTAAAATAA 59.228 34.615 0.00 0.00 0.00 1.40
2424 2466 6.297582 TCTGGACCCGTCTTTTGTTAAAATA 58.702 36.000 0.00 0.00 0.00 1.40
2425 2467 5.134661 TCTGGACCCGTCTTTTGTTAAAAT 58.865 37.500 0.00 0.00 0.00 1.82
2426 2468 4.525024 TCTGGACCCGTCTTTTGTTAAAA 58.475 39.130 0.00 0.00 0.00 1.52
2427 2469 4.153673 TCTGGACCCGTCTTTTGTTAAA 57.846 40.909 0.00 0.00 0.00 1.52
2428 2470 3.842007 TCTGGACCCGTCTTTTGTTAA 57.158 42.857 0.00 0.00 0.00 2.01
2429 2471 3.495453 CCTTCTGGACCCGTCTTTTGTTA 60.495 47.826 0.00 0.00 34.57 2.41
2453 2495 1.065491 ACTGTTAATGCAGCATCGGGA 60.065 47.619 8.77 0.00 39.96 5.14
2472 2514 5.577835 TGCTGTGTACTTCATGTTTTTCAC 58.422 37.500 0.00 0.00 0.00 3.18
2475 2517 9.030301 GTAAAATGCTGTGTACTTCATGTTTTT 57.970 29.630 0.00 3.67 0.00 1.94
2476 2518 8.194104 TGTAAAATGCTGTGTACTTCATGTTTT 58.806 29.630 0.00 4.86 0.00 2.43
2477 2519 7.711846 TGTAAAATGCTGTGTACTTCATGTTT 58.288 30.769 0.00 0.73 0.00 2.83
2548 2590 3.499745 GGTTGTTGGGGTCCTCTTTGTAT 60.500 47.826 0.00 0.00 0.00 2.29
2904 2946 2.018515 GCTACTTCTCTAGCTCGTGGT 58.981 52.381 0.00 0.00 36.88 4.16
2993 3035 7.720957 ACATGCATAGCCTGTTTGAATCTTATA 59.279 33.333 0.00 0.00 33.97 0.98
3025 3067 2.361757 TCCACTTTTGGCATGTTCACTG 59.638 45.455 0.00 0.00 43.56 3.66
3029 3071 3.993920 ACAATCCACTTTTGGCATGTTC 58.006 40.909 0.00 0.00 43.56 3.18
3063 3105 0.613853 TTGTGGGACGGAGGGAGTAG 60.614 60.000 0.00 0.00 0.00 2.57
3064 3106 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
3065 3107 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
3066 3108 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3067 3109 2.090943 AGTATATTGTGGGACGGAGGGA 60.091 50.000 0.00 0.00 0.00 4.20
3068 3110 2.326428 AGTATATTGTGGGACGGAGGG 58.674 52.381 0.00 0.00 0.00 4.30
3069 3111 4.022242 CACTAGTATATTGTGGGACGGAGG 60.022 50.000 0.00 0.00 31.83 4.30
3070 3112 4.583489 ACACTAGTATATTGTGGGACGGAG 59.417 45.833 0.00 0.00 38.75 4.63
3071 3113 4.539726 ACACTAGTATATTGTGGGACGGA 58.460 43.478 0.00 0.00 38.75 4.69
3072 3114 4.340097 TGACACTAGTATATTGTGGGACGG 59.660 45.833 0.00 0.00 34.37 4.79
3073 3115 5.509716 TGACACTAGTATATTGTGGGACG 57.490 43.478 0.00 0.00 34.37 4.79
3074 3116 8.448615 GTTTTTGACACTAGTATATTGTGGGAC 58.551 37.037 0.00 0.00 34.37 4.46
3075 3117 7.332430 CGTTTTTGACACTAGTATATTGTGGGA 59.668 37.037 0.00 0.00 34.37 4.37
3076 3118 7.461107 CGTTTTTGACACTAGTATATTGTGGG 58.539 38.462 0.00 0.00 34.37 4.61
3077 3119 6.959311 GCGTTTTTGACACTAGTATATTGTGG 59.041 38.462 0.00 0.00 34.37 4.17
3078 3120 7.739295 AGCGTTTTTGACACTAGTATATTGTG 58.261 34.615 0.00 0.00 34.37 3.33
3079 3121 7.900782 AGCGTTTTTGACACTAGTATATTGT 57.099 32.000 0.00 0.00 37.15 2.71
3080 3122 9.607285 AAAAGCGTTTTTGACACTAGTATATTG 57.393 29.630 9.31 0.00 35.26 1.90
3086 3128 9.607285 CAATATAAAAGCGTTTTTGACACTAGT 57.393 29.630 18.77 0.00 37.12 2.57
3087 3129 9.607285 ACAATATAAAAGCGTTTTTGACACTAG 57.393 29.630 18.77 6.47 37.12 2.57
3088 3130 9.388346 CACAATATAAAAGCGTTTTTGACACTA 57.612 29.630 18.77 0.00 37.12 2.74
3089 3131 7.381139 CCACAATATAAAAGCGTTTTTGACACT 59.619 33.333 18.77 2.86 37.12 3.55
3090 3132 7.358848 CCCACAATATAAAAGCGTTTTTGACAC 60.359 37.037 18.77 0.00 37.12 3.67
3091 3133 6.642950 CCCACAATATAAAAGCGTTTTTGACA 59.357 34.615 18.77 5.33 37.12 3.58
3092 3134 6.864165 TCCCACAATATAAAAGCGTTTTTGAC 59.136 34.615 18.77 0.00 37.12 3.18
3093 3135 6.864165 GTCCCACAATATAAAAGCGTTTTTGA 59.136 34.615 18.77 8.06 37.12 2.69
3094 3136 6.183359 CGTCCCACAATATAAAAGCGTTTTTG 60.183 38.462 18.77 6.09 37.12 2.44
3095 3137 5.859648 CGTCCCACAATATAAAAGCGTTTTT 59.140 36.000 14.50 14.50 39.69 1.94
3096 3138 5.395642 CGTCCCACAATATAAAAGCGTTTT 58.604 37.500 2.19 1.29 36.67 2.43
3097 3139 4.142556 CCGTCCCACAATATAAAAGCGTTT 60.143 41.667 2.53 2.53 0.00 3.60
3098 3140 3.375922 CCGTCCCACAATATAAAAGCGTT 59.624 43.478 0.00 0.00 0.00 4.84
3099 3141 2.940410 CCGTCCCACAATATAAAAGCGT 59.060 45.455 0.00 0.00 0.00 5.07
3100 3142 3.199677 TCCGTCCCACAATATAAAAGCG 58.800 45.455 0.00 0.00 0.00 4.68
3101 3143 3.564225 CCTCCGTCCCACAATATAAAAGC 59.436 47.826 0.00 0.00 0.00 3.51
3102 3144 4.134563 CCCTCCGTCCCACAATATAAAAG 58.865 47.826 0.00 0.00 0.00 2.27
3103 3145 3.781407 TCCCTCCGTCCCACAATATAAAA 59.219 43.478 0.00 0.00 0.00 1.52
3104 3146 3.386063 TCCCTCCGTCCCACAATATAAA 58.614 45.455 0.00 0.00 0.00 1.40
3105 3147 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
3106 3148 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
3107 3149 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
3108 3150 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
3109 3151 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3110 3152 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3111 3153 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3112 3154 0.614134 AACTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
3113 3155 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3114 3156 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
3115 3157 1.104630 CTGAACTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
3116 3158 2.125773 TCTGAACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
3117 3159 2.025226 TCATCTGAACTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
3118 3160 2.656002 TCATCTGAACTACTCCCTCCG 58.344 52.381 0.00 0.00 0.00 4.63
3119 3161 6.732896 TTTATCATCTGAACTACTCCCTCC 57.267 41.667 0.00 0.00 0.00 4.30
3144 3186 2.214376 TTTTGATGCCCCACGAGATT 57.786 45.000 0.00 0.00 0.00 2.40
3158 3200 6.043411 CGACCAAGGTAACCAAAATTTTTGA 58.957 36.000 20.74 1.13 37.17 2.69
3164 3206 5.134661 TCTTTCGACCAAGGTAACCAAAAT 58.865 37.500 0.00 0.00 37.17 1.82
3168 3210 5.188163 TGATATCTTTCGACCAAGGTAACCA 59.812 40.000 3.98 0.00 37.17 3.67
3176 3218 4.769688 ACTGCATGATATCTTTCGACCAA 58.230 39.130 3.98 0.00 0.00 3.67
3193 3238 3.058450 CAAAATTCATTCGGCAACTGCA 58.942 40.909 3.76 0.00 44.36 4.41
3200 3245 6.667007 ATTTGGATTCAAAATTCATTCGGC 57.333 33.333 2.57 0.00 44.83 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.