Multiple sequence alignment - TraesCS6D01G221700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G221700 chr6D 100.000 3168 0 0 1 3168 312762272 312765439 0.000000e+00 5851.0
1 TraesCS6D01G221700 chr6A 90.444 2543 139 55 374 2856 449583769 449586267 0.000000e+00 3254.0
2 TraesCS6D01G221700 chr6A 87.446 231 12 10 2859 3072 449588262 449588492 1.890000e-62 250.0
3 TraesCS6D01G221700 chr6B 89.218 2532 142 54 338 2777 514119889 514117397 0.000000e+00 3042.0
4 TraesCS6D01G221700 chr6B 88.925 307 26 1 2774 3072 514115977 514115671 3.860000e-99 372.0
5 TraesCS6D01G221700 chr2D 78.774 669 79 34 999 1631 491429579 491430220 1.070000e-104 390.0
6 TraesCS6D01G221700 chr2B 77.810 685 94 34 999 1643 575903796 575904462 1.390000e-98 370.0
7 TraesCS6D01G221700 chr2B 87.402 127 13 3 3044 3168 683770875 683771000 3.290000e-30 143.0
8 TraesCS6D01G221700 chr2A 88.785 214 21 1 999 1209 635723011 635723224 3.130000e-65 259.0
9 TraesCS6D01G221700 chr2A 80.000 350 45 15 1304 1631 635723297 635723643 5.280000e-58 235.0
10 TraesCS6D01G221700 chr7D 81.567 217 28 10 994 1209 492148813 492149018 5.430000e-38 169.0
11 TraesCS6D01G221700 chr7D 96.907 97 3 0 3072 3168 401721407 401721503 2.530000e-36 163.0
12 TraesCS6D01G221700 chr7B 97.938 97 2 0 3072 3168 733473600 733473504 5.430000e-38 169.0
13 TraesCS6D01G221700 chr7B 81.106 217 29 10 994 1209 521578088 521578293 2.530000e-36 163.0
14 TraesCS6D01G221700 chr7A 81.567 217 28 10 994 1209 558402766 558402971 5.430000e-38 169.0
15 TraesCS6D01G221700 chr7A 96.907 97 2 1 3072 3168 505691662 505691567 9.090000e-36 161.0
16 TraesCS6D01G221700 chr7A 78.981 157 29 3 1001 1156 65970082 65970235 1.550000e-18 104.0
17 TraesCS6D01G221700 chr1D 97.938 97 2 0 3072 3168 368290174 368290078 5.430000e-38 169.0
18 TraesCS6D01G221700 chr1D 96.907 97 3 0 3072 3168 462935995 462935899 2.530000e-36 163.0
19 TraesCS6D01G221700 chr1D 96.875 96 3 0 3073 3168 368314503 368314408 9.090000e-36 161.0
20 TraesCS6D01G221700 chr5B 96.907 97 3 0 3072 3168 464155211 464155307 2.530000e-36 163.0
21 TraesCS6D01G221700 chr1B 96.907 97 3 0 3072 3168 641624663 641624567 2.530000e-36 163.0
22 TraesCS6D01G221700 chr3A 93.182 44 3 0 39 82 28450709 28450752 7.330000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G221700 chr6D 312762272 312765439 3167 False 5851 5851 100.0000 1 3168 1 chr6D.!!$F1 3167
1 TraesCS6D01G221700 chr6A 449583769 449588492 4723 False 1752 3254 88.9450 374 3072 2 chr6A.!!$F1 2698
2 TraesCS6D01G221700 chr6B 514115671 514119889 4218 True 1707 3042 89.0715 338 3072 2 chr6B.!!$R1 2734
3 TraesCS6D01G221700 chr2D 491429579 491430220 641 False 390 390 78.7740 999 1631 1 chr2D.!!$F1 632
4 TraesCS6D01G221700 chr2B 575903796 575904462 666 False 370 370 77.8100 999 1643 1 chr2B.!!$F1 644
5 TraesCS6D01G221700 chr2A 635723011 635723643 632 False 247 259 84.3925 999 1631 2 chr2A.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.032912 TAGACGGATGTAGGCCCACA 60.033 55.0 6.43 6.43 0.00 4.17 F
157 158 0.107214 ACGGATGTAGGCCCACATTG 60.107 55.0 18.29 15.44 39.25 2.82 F
1302 1402 0.036294 GGACGGGAGCTTAACTTGCT 60.036 55.0 0.00 0.00 44.24 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1359 0.729140 GCCACTTTTCACGGCAATCG 60.729 55.0 0.00 0.0 45.52 3.34 R
2149 2290 0.888736 TTCACCAGTGTGGATTGGCG 60.889 55.0 0.00 0.0 40.96 5.69 R
2323 2464 0.040067 CCTCAAAAAGCACGAGCACC 60.040 55.0 7.77 0.0 45.49 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.527944 GAAAGAAAATGGGTCTAGGAGGG 58.472 47.826 0.00 0.00 0.00 4.30
23 24 2.493091 AGAAAATGGGTCTAGGAGGGG 58.507 52.381 0.00 0.00 0.00 4.79
24 25 1.495148 GAAAATGGGTCTAGGAGGGGG 59.505 57.143 0.00 0.00 0.00 5.40
38 39 4.185286 GGGGGATTTCGGGGGTCG 62.185 72.222 0.00 0.00 40.90 4.79
39 40 4.185286 GGGGATTTCGGGGGTCGG 62.185 72.222 0.00 0.00 39.77 4.79
40 41 4.185286 GGGATTTCGGGGGTCGGG 62.185 72.222 0.00 0.00 39.77 5.14
41 42 4.185286 GGATTTCGGGGGTCGGGG 62.185 72.222 0.00 0.00 39.77 5.73
42 43 3.405318 GATTTCGGGGGTCGGGGT 61.405 66.667 0.00 0.00 39.77 4.95
43 44 3.692370 GATTTCGGGGGTCGGGGTG 62.692 68.421 0.00 0.00 39.77 4.61
44 45 4.958158 TTTCGGGGGTCGGGGTGA 62.958 66.667 0.00 0.00 39.77 4.02
45 46 4.958158 TTCGGGGGTCGGGGTGAA 62.958 66.667 0.00 0.00 39.77 3.18
49 50 3.400054 GGGGTCGGGGTGAAGGAG 61.400 72.222 0.00 0.00 0.00 3.69
50 51 2.606826 GGGTCGGGGTGAAGGAGT 60.607 66.667 0.00 0.00 0.00 3.85
51 52 2.657066 GGGTCGGGGTGAAGGAGTC 61.657 68.421 0.00 0.00 0.00 3.36
52 53 2.657066 GGTCGGGGTGAAGGAGTCC 61.657 68.421 0.00 0.00 0.00 3.85
53 54 1.609794 GTCGGGGTGAAGGAGTCCT 60.610 63.158 5.62 5.62 33.87 3.85
54 55 0.324091 GTCGGGGTGAAGGAGTCCTA 60.324 60.000 13.43 0.00 31.13 2.94
55 56 0.324091 TCGGGGTGAAGGAGTCCTAC 60.324 60.000 13.43 7.91 31.13 3.18
56 57 1.664321 CGGGGTGAAGGAGTCCTACG 61.664 65.000 13.43 6.98 31.13 3.51
57 58 0.614134 GGGGTGAAGGAGTCCTACGT 60.614 60.000 13.43 0.00 31.13 3.57
58 59 0.531200 GGGTGAAGGAGTCCTACGTG 59.469 60.000 13.43 0.00 31.13 4.49
59 60 1.542492 GGTGAAGGAGTCCTACGTGA 58.458 55.000 13.43 0.00 31.13 4.35
60 61 1.201880 GGTGAAGGAGTCCTACGTGAC 59.798 57.143 13.43 0.75 31.13 3.67
62 63 2.095161 GTGAAGGAGTCCTACGTGACTG 60.095 54.545 13.43 0.00 45.41 3.51
63 64 1.473278 GAAGGAGTCCTACGTGACTGG 59.527 57.143 13.43 3.18 45.41 4.00
64 65 0.404812 AGGAGTCCTACGTGACTGGT 59.595 55.000 10.94 0.00 45.41 4.00
65 66 0.526662 GGAGTCCTACGTGACTGGTG 59.473 60.000 12.81 0.00 45.41 4.17
66 67 1.245732 GAGTCCTACGTGACTGGTGT 58.754 55.000 12.81 0.00 45.41 4.16
67 68 1.199558 GAGTCCTACGTGACTGGTGTC 59.800 57.143 12.81 0.00 45.41 3.67
68 69 0.243095 GTCCTACGTGACTGGTGTCC 59.757 60.000 0.00 0.00 42.28 4.02
69 70 1.211969 CCTACGTGACTGGTGTCCG 59.788 63.158 0.00 0.00 42.28 4.79
70 71 1.211969 CTACGTGACTGGTGTCCGG 59.788 63.158 0.00 0.00 42.28 5.14
71 72 1.228215 TACGTGACTGGTGTCCGGA 60.228 57.895 0.00 0.00 42.28 5.14
72 73 1.518056 TACGTGACTGGTGTCCGGAC 61.518 60.000 28.17 28.17 42.28 4.79
73 74 2.561956 CGTGACTGGTGTCCGGACT 61.562 63.158 33.39 14.76 42.28 3.85
74 75 1.289380 GTGACTGGTGTCCGGACTC 59.711 63.158 33.39 29.15 42.28 3.36
75 76 1.906824 TGACTGGTGTCCGGACTCC 60.907 63.158 37.57 37.57 42.28 3.85
78 79 3.311110 TGGTGTCCGGACTCCAGC 61.311 66.667 41.08 28.37 46.41 4.85
79 80 3.311110 GGTGTCCGGACTCCAGCA 61.311 66.667 38.56 17.24 42.75 4.41
80 81 2.741092 GTGTCCGGACTCCAGCAA 59.259 61.111 33.39 10.38 0.00 3.91
81 82 1.070786 GTGTCCGGACTCCAGCAAA 59.929 57.895 33.39 9.59 0.00 3.68
82 83 0.951040 GTGTCCGGACTCCAGCAAAG 60.951 60.000 33.39 0.00 0.00 2.77
83 84 1.376037 GTCCGGACTCCAGCAAAGG 60.376 63.158 27.64 0.00 0.00 3.11
84 85 2.747855 CCGGACTCCAGCAAAGGC 60.748 66.667 0.00 0.00 41.61 4.35
85 86 2.747855 CGGACTCCAGCAAAGGCC 60.748 66.667 0.00 0.00 42.56 5.19
86 87 2.361737 GGACTCCAGCAAAGGCCC 60.362 66.667 0.00 0.00 42.56 5.80
87 88 2.361737 GACTCCAGCAAAGGCCCC 60.362 66.667 0.00 0.00 42.56 5.80
88 89 3.946126 GACTCCAGCAAAGGCCCCC 62.946 68.421 0.00 0.00 42.56 5.40
104 105 2.309136 CCCCCAACTTTGTCTCCATT 57.691 50.000 0.00 0.00 0.00 3.16
105 106 2.608623 CCCCCAACTTTGTCTCCATTT 58.391 47.619 0.00 0.00 0.00 2.32
106 107 2.299867 CCCCCAACTTTGTCTCCATTTG 59.700 50.000 0.00 0.00 0.00 2.32
107 108 2.289010 CCCCAACTTTGTCTCCATTTGC 60.289 50.000 0.00 0.00 0.00 3.68
108 109 2.607771 CCCAACTTTGTCTCCATTTGCG 60.608 50.000 0.00 0.00 0.00 4.85
109 110 2.293122 CCAACTTTGTCTCCATTTGCGA 59.707 45.455 0.00 0.00 0.00 5.10
110 111 3.243367 CCAACTTTGTCTCCATTTGCGAA 60.243 43.478 0.00 0.00 0.00 4.70
111 112 4.358851 CAACTTTGTCTCCATTTGCGAAA 58.641 39.130 0.00 0.00 0.00 3.46
112 113 4.647424 ACTTTGTCTCCATTTGCGAAAA 57.353 36.364 0.00 0.00 0.00 2.29
113 114 5.004922 ACTTTGTCTCCATTTGCGAAAAA 57.995 34.783 0.00 0.00 0.00 1.94
128 129 3.740513 AAAAAGTGCGTCCGGACC 58.259 55.556 28.52 20.60 37.15 4.46
129 130 2.248835 AAAAAGTGCGTCCGGACCG 61.249 57.895 28.52 22.76 37.15 4.79
145 146 3.108343 CGCTCGGTAGACGGATGT 58.892 61.111 0.00 0.00 44.45 3.06
146 147 2.314256 CGCTCGGTAGACGGATGTA 58.686 57.895 0.00 0.00 44.45 2.29
147 148 0.235144 CGCTCGGTAGACGGATGTAG 59.765 60.000 0.00 0.00 44.45 2.74
148 149 0.592148 GCTCGGTAGACGGATGTAGG 59.408 60.000 0.00 0.00 44.45 3.18
149 150 0.592148 CTCGGTAGACGGATGTAGGC 59.408 60.000 0.00 0.00 44.45 3.93
150 151 0.820891 TCGGTAGACGGATGTAGGCC 60.821 60.000 0.00 0.00 44.45 5.19
151 152 1.803366 CGGTAGACGGATGTAGGCCC 61.803 65.000 0.00 0.00 39.42 5.80
152 153 0.757935 GGTAGACGGATGTAGGCCCA 60.758 60.000 0.00 0.00 0.00 5.36
153 154 0.388294 GTAGACGGATGTAGGCCCAC 59.612 60.000 0.00 0.00 0.00 4.61
154 155 0.032912 TAGACGGATGTAGGCCCACA 60.033 55.000 6.43 6.43 0.00 4.17
155 156 0.691078 AGACGGATGTAGGCCCACAT 60.691 55.000 17.28 17.28 41.83 3.21
156 157 0.180406 GACGGATGTAGGCCCACATT 59.820 55.000 18.29 2.25 39.25 2.71
157 158 0.107214 ACGGATGTAGGCCCACATTG 60.107 55.000 18.29 15.44 39.25 2.82
158 159 0.819259 CGGATGTAGGCCCACATTGG 60.819 60.000 18.29 9.37 39.25 3.16
159 160 0.550914 GGATGTAGGCCCACATTGGA 59.449 55.000 18.29 0.00 40.96 3.53
160 161 1.145738 GGATGTAGGCCCACATTGGAT 59.854 52.381 18.29 0.00 40.96 3.41
161 162 2.233271 GATGTAGGCCCACATTGGATG 58.767 52.381 18.29 0.00 40.96 3.51
162 163 0.258484 TGTAGGCCCACATTGGATGG 59.742 55.000 0.00 0.00 40.96 3.51
163 164 1.109323 GTAGGCCCACATTGGATGGC 61.109 60.000 0.00 5.15 40.96 4.40
164 165 1.579140 TAGGCCCACATTGGATGGCA 61.579 55.000 0.00 0.00 45.83 4.92
165 166 1.763256 GGCCCACATTGGATGGCAT 60.763 57.895 0.00 0.00 45.83 4.40
166 167 0.469705 GGCCCACATTGGATGGCATA 60.470 55.000 0.00 0.00 45.83 3.14
167 168 1.412079 GCCCACATTGGATGGCATAA 58.588 50.000 0.00 0.00 40.96 1.90
168 169 1.069049 GCCCACATTGGATGGCATAAC 59.931 52.381 0.00 0.00 40.96 1.89
169 170 2.386779 CCCACATTGGATGGCATAACA 58.613 47.619 0.00 0.00 40.96 2.41
170 171 2.967201 CCCACATTGGATGGCATAACAT 59.033 45.455 0.00 0.00 40.96 2.71
171 172 3.243941 CCCACATTGGATGGCATAACATG 60.244 47.826 0.00 5.37 40.96 3.21
172 173 3.385433 CCACATTGGATGGCATAACATGT 59.615 43.478 0.00 6.04 40.96 3.21
173 174 4.500205 CCACATTGGATGGCATAACATGTC 60.500 45.833 12.59 0.00 40.96 3.06
174 175 3.638160 ACATTGGATGGCATAACATGTCC 59.362 43.478 0.00 0.00 32.84 4.02
175 176 1.965935 TGGATGGCATAACATGTCCG 58.034 50.000 0.00 0.00 32.84 4.79
176 177 1.238439 GGATGGCATAACATGTCCGG 58.762 55.000 0.00 0.00 32.84 5.14
177 178 1.202758 GGATGGCATAACATGTCCGGA 60.203 52.381 0.00 0.00 32.84 5.14
178 179 2.553028 GGATGGCATAACATGTCCGGAT 60.553 50.000 7.81 0.00 32.84 4.18
179 180 2.254546 TGGCATAACATGTCCGGATC 57.745 50.000 7.81 1.69 32.84 3.36
180 181 1.148310 GGCATAACATGTCCGGATCG 58.852 55.000 7.81 1.10 0.00 3.69
181 182 1.540363 GGCATAACATGTCCGGATCGT 60.540 52.381 7.81 1.87 0.00 3.73
182 183 2.288579 GGCATAACATGTCCGGATCGTA 60.289 50.000 7.81 0.00 0.00 3.43
183 184 2.729882 GCATAACATGTCCGGATCGTAC 59.270 50.000 7.81 0.00 0.00 3.67
184 185 3.797524 GCATAACATGTCCGGATCGTACA 60.798 47.826 7.81 0.07 0.00 2.90
185 186 4.364860 CATAACATGTCCGGATCGTACAA 58.635 43.478 7.81 0.00 0.00 2.41
186 187 3.536956 AACATGTCCGGATCGTACAAT 57.463 42.857 7.81 0.00 0.00 2.71
187 188 3.093717 ACATGTCCGGATCGTACAATC 57.906 47.619 7.81 0.00 0.00 2.67
188 189 2.223971 ACATGTCCGGATCGTACAATCC 60.224 50.000 7.81 2.41 41.63 3.01
193 194 2.213483 GGATCGTACAATCCGCACG 58.787 57.895 0.00 0.00 36.14 5.34
194 195 1.558383 GATCGTACAATCCGCACGC 59.442 57.895 0.00 0.00 35.70 5.34
195 196 1.143373 GATCGTACAATCCGCACGCA 61.143 55.000 0.00 0.00 35.70 5.24
196 197 1.418342 ATCGTACAATCCGCACGCAC 61.418 55.000 0.00 0.00 35.70 5.34
197 198 2.394136 GTACAATCCGCACGCACG 59.606 61.111 0.00 0.00 0.00 5.34
198 199 3.483665 TACAATCCGCACGCACGC 61.484 61.111 0.00 0.00 0.00 5.34
211 212 4.778415 CACGCGGGTCACTCGAGG 62.778 72.222 18.41 5.96 0.00 4.63
213 214 3.518998 CGCGGGTCACTCGAGGAT 61.519 66.667 18.41 0.00 0.00 3.24
214 215 2.413765 GCGGGTCACTCGAGGATC 59.586 66.667 18.41 11.18 0.00 3.36
215 216 2.415608 GCGGGTCACTCGAGGATCA 61.416 63.158 18.41 0.00 33.17 2.92
216 217 1.730487 CGGGTCACTCGAGGATCAG 59.270 63.158 18.41 8.48 33.17 2.90
217 218 1.032657 CGGGTCACTCGAGGATCAGT 61.033 60.000 18.41 0.00 33.17 3.41
218 219 0.457851 GGGTCACTCGAGGATCAGTG 59.542 60.000 18.41 5.60 42.01 3.66
219 220 1.178276 GGTCACTCGAGGATCAGTGT 58.822 55.000 18.41 0.00 41.64 3.55
220 221 1.546476 GGTCACTCGAGGATCAGTGTT 59.454 52.381 18.41 0.00 41.64 3.32
221 222 2.600731 GTCACTCGAGGATCAGTGTTG 58.399 52.381 18.41 2.33 41.64 3.33
222 223 1.546029 TCACTCGAGGATCAGTGTTGG 59.454 52.381 18.41 0.00 41.64 3.77
223 224 1.546029 CACTCGAGGATCAGTGTTGGA 59.454 52.381 18.41 0.00 38.53 3.53
224 225 1.821753 ACTCGAGGATCAGTGTTGGAG 59.178 52.381 18.41 0.00 33.17 3.86
225 226 2.095461 CTCGAGGATCAGTGTTGGAGA 58.905 52.381 3.91 0.00 33.17 3.71
226 227 2.692557 CTCGAGGATCAGTGTTGGAGAT 59.307 50.000 3.91 0.00 33.17 2.75
227 228 2.428530 TCGAGGATCAGTGTTGGAGATG 59.571 50.000 0.00 0.00 33.17 2.90
228 229 2.559440 GAGGATCAGTGTTGGAGATGC 58.441 52.381 0.00 0.00 33.17 3.91
229 230 1.211457 AGGATCAGTGTTGGAGATGCC 59.789 52.381 0.00 0.00 31.41 4.40
230 231 1.673168 GATCAGTGTTGGAGATGCCC 58.327 55.000 0.00 0.00 34.97 5.36
231 232 1.211457 GATCAGTGTTGGAGATGCCCT 59.789 52.381 0.00 0.00 34.97 5.19
232 233 1.951209 TCAGTGTTGGAGATGCCCTA 58.049 50.000 0.00 0.00 34.97 3.53
233 234 2.265367 TCAGTGTTGGAGATGCCCTAA 58.735 47.619 0.00 0.00 34.97 2.69
234 235 2.027192 TCAGTGTTGGAGATGCCCTAAC 60.027 50.000 0.00 0.00 34.97 2.34
235 236 1.985159 AGTGTTGGAGATGCCCTAACA 59.015 47.619 0.00 0.00 34.97 2.41
236 237 2.578021 AGTGTTGGAGATGCCCTAACAT 59.422 45.455 0.00 0.00 33.34 2.71
237 238 3.010584 AGTGTTGGAGATGCCCTAACATT 59.989 43.478 0.00 0.00 33.34 2.71
238 239 4.227300 AGTGTTGGAGATGCCCTAACATTA 59.773 41.667 0.00 0.00 33.34 1.90
239 240 5.103940 AGTGTTGGAGATGCCCTAACATTAT 60.104 40.000 0.00 0.00 33.34 1.28
240 241 5.594317 GTGTTGGAGATGCCCTAACATTATT 59.406 40.000 0.00 0.00 33.34 1.40
241 242 5.593909 TGTTGGAGATGCCCTAACATTATTG 59.406 40.000 0.00 0.00 34.97 1.90
242 243 5.645056 TGGAGATGCCCTAACATTATTGA 57.355 39.130 0.00 0.00 34.97 2.57
243 244 6.012337 TGGAGATGCCCTAACATTATTGAA 57.988 37.500 0.00 0.00 34.97 2.69
244 245 6.430864 TGGAGATGCCCTAACATTATTGAAA 58.569 36.000 0.00 0.00 34.97 2.69
245 246 6.894654 TGGAGATGCCCTAACATTATTGAAAA 59.105 34.615 0.00 0.00 34.97 2.29
246 247 7.068593 TGGAGATGCCCTAACATTATTGAAAAG 59.931 37.037 0.00 0.00 34.97 2.27
247 248 7.068716 GGAGATGCCCTAACATTATTGAAAAGT 59.931 37.037 0.00 0.00 0.00 2.66
248 249 8.000780 AGATGCCCTAACATTATTGAAAAGTC 57.999 34.615 0.00 0.00 0.00 3.01
249 250 7.836183 AGATGCCCTAACATTATTGAAAAGTCT 59.164 33.333 0.00 0.00 0.00 3.24
250 251 9.120538 GATGCCCTAACATTATTGAAAAGTCTA 57.879 33.333 0.00 0.00 0.00 2.59
251 252 8.871629 TGCCCTAACATTATTGAAAAGTCTAA 57.128 30.769 0.00 0.00 0.00 2.10
252 253 9.303116 TGCCCTAACATTATTGAAAAGTCTAAA 57.697 29.630 0.00 0.00 0.00 1.85
285 286 9.230122 TCAGAAATAATAAAAGCATCAGTGTCA 57.770 29.630 0.00 0.00 0.00 3.58
286 287 9.282247 CAGAAATAATAAAAGCATCAGTGTCAC 57.718 33.333 0.00 0.00 0.00 3.67
287 288 8.462016 AGAAATAATAAAAGCATCAGTGTCACC 58.538 33.333 0.00 0.00 0.00 4.02
288 289 7.701539 AATAATAAAAGCATCAGTGTCACCA 57.298 32.000 0.00 0.00 0.00 4.17
289 290 7.886629 ATAATAAAAGCATCAGTGTCACCAT 57.113 32.000 0.00 0.00 0.00 3.55
290 291 3.928727 AAAAGCATCAGTGTCACCATG 57.071 42.857 0.00 3.88 0.00 3.66
291 292 1.830279 AAGCATCAGTGTCACCATGG 58.170 50.000 11.19 11.19 0.00 3.66
292 293 0.694771 AGCATCAGTGTCACCATGGT 59.305 50.000 13.00 13.00 0.00 3.55
293 294 0.806868 GCATCAGTGTCACCATGGTG 59.193 55.000 35.00 35.00 46.64 4.17
294 295 1.456296 CATCAGTGTCACCATGGTGG 58.544 55.000 38.12 24.46 45.43 4.61
295 296 0.329261 ATCAGTGTCACCATGGTGGG 59.671 55.000 38.12 23.86 43.37 4.61
296 297 1.973281 CAGTGTCACCATGGTGGGC 60.973 63.158 38.12 30.41 43.37 5.36
297 298 2.156098 AGTGTCACCATGGTGGGCT 61.156 57.895 38.12 29.26 43.37 5.19
298 299 1.973281 GTGTCACCATGGTGGGCTG 60.973 63.158 38.12 17.94 43.37 4.85
299 300 2.361610 GTCACCATGGTGGGCTGG 60.362 66.667 38.12 17.17 43.37 4.85
300 301 2.858476 TCACCATGGTGGGCTGGT 60.858 61.111 38.12 4.61 46.68 4.00
301 302 2.118076 CACCATGGTGGGCTGGTT 59.882 61.111 33.56 0.00 43.21 3.67
302 303 1.978617 CACCATGGTGGGCTGGTTC 60.979 63.158 33.56 0.00 43.21 3.62
303 304 2.362889 CCATGGTGGGCTGGTTCC 60.363 66.667 2.57 0.00 32.67 3.62
304 305 2.440147 CATGGTGGGCTGGTTCCA 59.560 61.111 0.00 0.00 0.00 3.53
308 309 2.597510 GTGGGCTGGTTCCACCAC 60.598 66.667 13.34 13.34 44.79 4.16
309 310 3.099841 TGGGCTGGTTCCACCACA 61.100 61.111 10.75 0.12 44.79 4.17
310 311 2.597510 GGGCTGGTTCCACCACAC 60.598 66.667 10.75 0.00 44.79 3.82
311 312 2.194597 GGCTGGTTCCACCACACA 59.805 61.111 0.00 0.00 44.79 3.72
312 313 1.454847 GGCTGGTTCCACCACACAA 60.455 57.895 0.00 0.00 44.79 3.33
313 314 1.040339 GGCTGGTTCCACCACACAAA 61.040 55.000 0.00 0.00 44.79 2.83
314 315 0.820871 GCTGGTTCCACCACACAAAA 59.179 50.000 0.00 0.00 44.79 2.44
315 316 1.470805 GCTGGTTCCACCACACAAAAC 60.471 52.381 0.00 0.00 44.79 2.43
316 317 2.099405 CTGGTTCCACCACACAAAACT 58.901 47.619 0.00 0.00 44.79 2.66
317 318 2.096248 TGGTTCCACCACACAAAACTC 58.904 47.619 0.00 0.00 44.79 3.01
318 319 2.096248 GGTTCCACCACACAAAACTCA 58.904 47.619 0.00 0.00 38.42 3.41
319 320 2.494073 GGTTCCACCACACAAAACTCAA 59.506 45.455 0.00 0.00 38.42 3.02
320 321 3.507786 GTTCCACCACACAAAACTCAAC 58.492 45.455 0.00 0.00 0.00 3.18
321 322 2.096248 TCCACCACACAAAACTCAACC 58.904 47.619 0.00 0.00 0.00 3.77
322 323 1.821753 CCACCACACAAAACTCAACCA 59.178 47.619 0.00 0.00 0.00 3.67
323 324 2.430332 CCACCACACAAAACTCAACCAT 59.570 45.455 0.00 0.00 0.00 3.55
324 325 3.446799 CACCACACAAAACTCAACCATG 58.553 45.455 0.00 0.00 0.00 3.66
325 326 3.096092 ACCACACAAAACTCAACCATGT 58.904 40.909 0.00 0.00 0.00 3.21
326 327 4.097135 CACCACACAAAACTCAACCATGTA 59.903 41.667 0.00 0.00 0.00 2.29
327 328 4.707448 ACCACACAAAACTCAACCATGTAA 59.293 37.500 0.00 0.00 0.00 2.41
328 329 5.163561 ACCACACAAAACTCAACCATGTAAG 60.164 40.000 0.00 0.00 0.00 2.34
329 330 4.739716 CACACAAAACTCAACCATGTAAGC 59.260 41.667 0.00 0.00 0.00 3.09
330 331 4.644685 ACACAAAACTCAACCATGTAAGCT 59.355 37.500 0.00 0.00 0.00 3.74
331 332 5.825679 ACACAAAACTCAACCATGTAAGCTA 59.174 36.000 0.00 0.00 0.00 3.32
332 333 6.017109 ACACAAAACTCAACCATGTAAGCTAG 60.017 38.462 0.00 0.00 0.00 3.42
333 334 5.473504 ACAAAACTCAACCATGTAAGCTAGG 59.526 40.000 0.00 0.00 0.00 3.02
334 335 3.268023 ACTCAACCATGTAAGCTAGGC 57.732 47.619 0.00 0.00 0.00 3.93
335 336 2.840651 ACTCAACCATGTAAGCTAGGCT 59.159 45.455 0.00 0.00 42.56 4.58
336 337 3.118592 ACTCAACCATGTAAGCTAGGCTC 60.119 47.826 0.00 0.00 38.25 4.70
337 338 2.837591 TCAACCATGTAAGCTAGGCTCA 59.162 45.455 0.00 0.00 38.25 4.26
338 339 3.118629 TCAACCATGTAAGCTAGGCTCAG 60.119 47.826 0.00 0.00 38.25 3.35
339 340 2.472029 ACCATGTAAGCTAGGCTCAGT 58.528 47.619 0.00 0.00 38.25 3.41
340 341 2.840651 ACCATGTAAGCTAGGCTCAGTT 59.159 45.455 0.00 0.00 38.25 3.16
341 342 3.118592 ACCATGTAAGCTAGGCTCAGTTC 60.119 47.826 0.00 0.00 38.25 3.01
342 343 3.118629 CCATGTAAGCTAGGCTCAGTTCA 60.119 47.826 0.00 0.00 38.25 3.18
349 350 3.262915 AGCTAGGCTCAGTTCACTTTCAT 59.737 43.478 0.00 0.00 30.62 2.57
351 352 2.157738 AGGCTCAGTTCACTTTCATGC 58.842 47.619 0.00 0.00 0.00 4.06
357 358 4.713553 TCAGTTCACTTTCATGCCACTTA 58.286 39.130 0.00 0.00 0.00 2.24
359 360 5.181811 TCAGTTCACTTTCATGCCACTTATG 59.818 40.000 0.00 0.00 0.00 1.90
361 362 5.536161 AGTTCACTTTCATGCCACTTATGTT 59.464 36.000 0.00 0.00 0.00 2.71
362 363 5.375417 TCACTTTCATGCCACTTATGTTG 57.625 39.130 0.00 0.00 0.00 3.33
376 377 6.072838 CCACTTATGTTGGCTATATCTTGCAG 60.073 42.308 0.00 0.00 0.00 4.41
431 432 0.594110 GACGCGGAAAAATCCCACAA 59.406 50.000 12.47 0.00 0.00 3.33
432 433 0.312729 ACGCGGAAAAATCCCACAAC 59.687 50.000 12.47 0.00 0.00 3.32
433 434 0.727793 CGCGGAAAAATCCCACAACG 60.728 55.000 0.00 0.00 0.00 4.10
509 518 3.590466 AACAGGAGTGGCATGCCCC 62.590 63.158 33.44 26.08 34.56 5.80
510 519 4.051167 CAGGAGTGGCATGCCCCA 62.051 66.667 33.44 14.02 34.56 4.96
512 521 2.042639 GGAGTGGCATGCCCCATT 60.043 61.111 33.44 13.25 37.20 3.16
513 522 2.129785 GGAGTGGCATGCCCCATTC 61.130 63.158 33.44 20.78 39.96 2.67
514 523 1.380246 GAGTGGCATGCCCCATTCA 60.380 57.895 33.44 11.50 40.30 2.57
522 533 1.259840 ATGCCCCATTCAACCACAGC 61.260 55.000 0.00 0.00 0.00 4.40
527 538 0.238289 CCATTCAACCACAGCACGAC 59.762 55.000 0.00 0.00 0.00 4.34
585 618 2.334838 GTCCGTACTACAAAGCCACAG 58.665 52.381 0.00 0.00 0.00 3.66
639 689 0.820891 CATGGCAGCCACAGGGATAC 60.821 60.000 19.10 0.00 35.80 2.24
646 696 2.628178 CAGCCACAGGGATACGATAGAA 59.372 50.000 0.00 0.00 36.43 2.10
684 739 3.895041 GGGAGGGAGAACAATTGACAAAA 59.105 43.478 13.59 0.00 0.00 2.44
710 765 4.104417 ACTCACGCGAGCGAGACC 62.104 66.667 24.72 0.00 42.74 3.85
860 923 2.063266 TCACGTTTATCTTCCACGCAC 58.937 47.619 0.00 0.00 37.44 5.34
862 925 1.270412 ACGTTTATCTTCCACGCACCA 60.270 47.619 0.00 0.00 37.44 4.17
863 926 2.006888 CGTTTATCTTCCACGCACCAT 58.993 47.619 0.00 0.00 0.00 3.55
864 927 2.030457 CGTTTATCTTCCACGCACCATC 59.970 50.000 0.00 0.00 0.00 3.51
866 929 1.199615 TATCTTCCACGCACCATCCA 58.800 50.000 0.00 0.00 0.00 3.41
867 930 0.548031 ATCTTCCACGCACCATCCAT 59.452 50.000 0.00 0.00 0.00 3.41
868 931 0.107703 TCTTCCACGCACCATCCATC 60.108 55.000 0.00 0.00 0.00 3.51
875 943 1.849116 GCACCATCCATCCCTCCAT 59.151 57.895 0.00 0.00 0.00 3.41
988 1057 0.885196 GAAGGGGGAGATCGATCGAG 59.115 60.000 23.84 0.00 0.00 4.04
989 1058 0.478942 AAGGGGGAGATCGATCGAGA 59.521 55.000 23.84 0.68 0.00 4.04
991 1060 0.963355 GGGGGAGATCGATCGAGAGG 60.963 65.000 23.84 0.00 0.00 3.69
1216 1297 0.249784 CATCTGCCAGGTCAGGATCG 60.250 60.000 10.08 0.00 34.91 3.69
1224 1305 2.495270 CCAGGTCAGGATCGGATAGATG 59.505 54.545 0.00 0.00 40.26 2.90
1244 1333 4.451629 TGTAACTCGATCTTCTGGGTTC 57.548 45.455 0.00 0.00 0.00 3.62
1258 1351 0.108585 GGGTTCTGGCTTCTGTGTGA 59.891 55.000 0.00 0.00 0.00 3.58
1263 1359 1.227943 TGGCTTCTGTGTGAGTGCC 60.228 57.895 0.00 0.00 42.43 5.01
1274 1370 2.434185 GAGTGCCGATTGCCGTGA 60.434 61.111 0.00 0.00 40.16 4.35
1297 1397 2.510918 GGCGGACGGGAGCTTAAC 60.511 66.667 0.00 0.00 0.00 2.01
1301 1401 1.359459 CGGACGGGAGCTTAACTTGC 61.359 60.000 0.00 0.00 0.00 4.01
1302 1402 0.036294 GGACGGGAGCTTAACTTGCT 60.036 55.000 0.00 0.00 44.24 3.91
1395 1495 2.583868 GACGTGTCGGTGCACACA 60.584 61.111 20.43 12.70 46.09 3.72
1584 1717 1.202964 TCCGAGTACCTCACCAAGACA 60.203 52.381 0.00 0.00 0.00 3.41
1587 1720 3.446161 CCGAGTACCTCACCAAGACATTA 59.554 47.826 0.00 0.00 0.00 1.90
1590 1723 4.164981 AGTACCTCACCAAGACATTACCA 58.835 43.478 0.00 0.00 0.00 3.25
1752 1889 0.535328 TTTTGGCACGTTCCGGATCA 60.535 50.000 4.15 0.00 0.00 2.92
1769 1906 3.935828 GGATCAAGAAAGCTAGAAACGCT 59.064 43.478 0.00 0.00 39.94 5.07
1826 1964 3.016736 CACCCAGTACAACCATTCCATC 58.983 50.000 0.00 0.00 0.00 3.51
1944 2085 3.290710 CACCTAGATCCACCATTTTGGG 58.709 50.000 0.00 0.00 43.37 4.12
1965 2106 4.996758 GGGCACAAGCAAAATTTACATCTT 59.003 37.500 0.00 0.00 44.61 2.40
1975 2116 8.755977 AGCAAAATTTACATCTTTGGATCATCT 58.244 29.630 0.00 0.00 31.98 2.90
1985 2126 7.345653 ACATCTTTGGATCATCTACTAGAACCA 59.654 37.037 0.00 0.00 0.00 3.67
1988 2129 6.716934 TTGGATCATCTACTAGAACCAGTC 57.283 41.667 0.00 0.00 0.00 3.51
2158 2299 3.969250 GACTTCGGCCGCCAATCCA 62.969 63.158 23.51 0.00 0.00 3.41
2229 2370 4.246458 GGATCGGAGTTAATATGCTGGAC 58.754 47.826 0.00 0.00 0.00 4.02
2248 2389 7.140048 GCTGGACTACATGACTGTAATACTAC 58.860 42.308 0.00 0.00 37.41 2.73
2249 2390 7.013464 GCTGGACTACATGACTGTAATACTACT 59.987 40.741 0.00 0.00 37.41 2.57
2250 2391 9.557061 CTGGACTACATGACTGTAATACTACTA 57.443 37.037 0.00 0.00 37.41 1.82
2258 2399 9.566530 CATGACTGTAATACTACTAGATGATGC 57.433 37.037 0.00 0.00 0.00 3.91
2275 2416 4.265893 TGATGCTGTTTCGGGCTTAATTA 58.734 39.130 0.00 0.00 0.00 1.40
2315 2456 1.437986 CGTCCTCATTCCTCGGGAC 59.562 63.158 0.00 0.00 43.22 4.46
2383 2524 4.555511 GCGCCTTTATATGCTTTTCTCCTG 60.556 45.833 0.00 0.00 0.00 3.86
2396 2549 0.850100 TCTCCTGAGTTTTTGCCCCA 59.150 50.000 0.00 0.00 0.00 4.96
2403 2556 2.959707 TGAGTTTTTGCCCCAAATACGT 59.040 40.909 0.00 0.00 39.19 3.57
2476 2629 2.221169 TCTGCAGCTGTTTGTACTTGG 58.779 47.619 16.64 0.00 0.00 3.61
2508 2661 2.140717 GGTACCGGTTGTCTGTTTGAG 58.859 52.381 15.04 0.00 0.00 3.02
2521 2674 4.449743 GTCTGTTTGAGTGTAAATGGCGTA 59.550 41.667 0.00 0.00 0.00 4.42
2539 2692 4.142359 GGCGTAGAGAGATCAAACTGAAGA 60.142 45.833 0.00 0.00 0.00 2.87
2581 2734 2.102757 ACATGTTGCAAATGAAGCACCA 59.897 40.909 20.96 5.98 42.54 4.17
2599 2752 2.992476 ACACTAGCTAGGTGTGGGG 58.008 57.895 24.35 0.66 44.82 4.96
2644 2797 2.941025 CACCCTCCACCACCCCAT 60.941 66.667 0.00 0.00 0.00 4.00
2670 2823 0.032678 CCTCCCTCATTGTCCGATCG 59.967 60.000 8.51 8.51 0.00 3.69
2704 2857 4.234574 CAGTACACGATGTGAAGCACTAA 58.765 43.478 3.61 0.00 36.96 2.24
2721 2874 3.023832 ACTAAAACAGGCAACAAGCTGT 58.976 40.909 0.00 0.00 44.79 4.40
2752 2905 6.536941 TGTTGCAGCATACGAATACAAAGATA 59.463 34.615 0.00 0.00 0.00 1.98
2762 2915 7.781548 ACGAATACAAAGATACAATACCCAC 57.218 36.000 0.00 0.00 0.00 4.61
2767 4343 6.834168 ACAAAGATACAATACCCACCAAAG 57.166 37.500 0.00 0.00 0.00 2.77
2770 4346 6.388619 AAGATACAATACCCACCAAAGACT 57.611 37.500 0.00 0.00 0.00 3.24
2777 4353 6.043474 ACAATACCCACCAAAGACTAGTACAA 59.957 38.462 0.00 0.00 0.00 2.41
2786 4362 9.383519 CACCAAAGACTAGTACAACATCAATAT 57.616 33.333 0.00 0.00 0.00 1.28
2824 4400 3.173599 CGTCATTGCAATCACATCAACC 58.826 45.455 14.13 0.00 0.00 3.77
2842 4418 0.677731 CCAACGCATCACCCATGACT 60.678 55.000 0.00 0.00 37.79 3.41
2923 6491 6.918569 TGTGGTGTAAAATTCAAAACCATACG 59.081 34.615 5.55 0.00 39.70 3.06
2936 6504 3.746045 ACCATACGCCGAATTATGACT 57.254 42.857 0.00 0.00 0.00 3.41
2949 6534 5.607477 GAATTATGACTTGGACCGTATGGA 58.393 41.667 8.33 0.00 39.21 3.41
2979 6564 1.342496 CTCGCATGCCTCCTCTTCATA 59.658 52.381 13.15 0.00 0.00 2.15
3005 6590 1.341209 CGTCATGTAGGCTGCATAGGA 59.659 52.381 17.88 9.43 0.00 2.94
3022 6607 4.181010 AAGCATCCCTCGCGCCAT 62.181 61.111 0.00 0.00 0.00 4.40
3033 6618 1.297893 CGCGCCATTTAGAGCAAGC 60.298 57.895 0.00 0.00 0.00 4.01
3072 6657 2.238521 CGGGGTATAGCAATTGCCATT 58.761 47.619 26.45 13.87 43.38 3.16
3073 6658 2.030007 CGGGGTATAGCAATTGCCATTG 60.030 50.000 26.45 6.15 42.60 2.82
3074 6659 2.965147 GGGGTATAGCAATTGCCATTGT 59.035 45.455 26.45 10.51 41.84 2.71
3075 6660 3.387699 GGGGTATAGCAATTGCCATTGTT 59.612 43.478 26.45 9.76 41.84 2.83
3076 6661 4.586841 GGGGTATAGCAATTGCCATTGTTA 59.413 41.667 26.45 11.73 41.84 2.41
3077 6662 5.278957 GGGGTATAGCAATTGCCATTGTTAG 60.279 44.000 26.45 0.00 41.84 2.34
3078 6663 5.534654 GGGTATAGCAATTGCCATTGTTAGA 59.465 40.000 26.45 6.10 41.84 2.10
3079 6664 6.294176 GGGTATAGCAATTGCCATTGTTAGAG 60.294 42.308 26.45 0.00 41.84 2.43
3080 6665 6.263168 GGTATAGCAATTGCCATTGTTAGAGT 59.737 38.462 26.45 6.24 41.84 3.24
3081 6666 6.780457 ATAGCAATTGCCATTGTTAGAGTT 57.220 33.333 26.45 6.03 41.84 3.01
3082 6667 4.813027 AGCAATTGCCATTGTTAGAGTTG 58.187 39.130 26.45 0.00 41.84 3.16
3083 6668 4.281688 AGCAATTGCCATTGTTAGAGTTGT 59.718 37.500 26.45 0.00 41.84 3.32
3084 6669 4.386652 GCAATTGCCATTGTTAGAGTTGTG 59.613 41.667 20.06 0.00 41.84 3.33
3085 6670 5.531634 CAATTGCCATTGTTAGAGTTGTGT 58.468 37.500 2.36 0.00 35.86 3.72
3086 6671 4.829064 TTGCCATTGTTAGAGTTGTGTC 57.171 40.909 0.00 0.00 0.00 3.67
3087 6672 2.805671 TGCCATTGTTAGAGTTGTGTCG 59.194 45.455 0.00 0.00 0.00 4.35
3088 6673 3.064207 GCCATTGTTAGAGTTGTGTCGA 58.936 45.455 0.00 0.00 0.00 4.20
3089 6674 3.496884 GCCATTGTTAGAGTTGTGTCGAA 59.503 43.478 0.00 0.00 0.00 3.71
3090 6675 4.154195 GCCATTGTTAGAGTTGTGTCGAAT 59.846 41.667 0.00 0.00 0.00 3.34
3091 6676 5.350365 GCCATTGTTAGAGTTGTGTCGAATA 59.650 40.000 0.00 0.00 0.00 1.75
3092 6677 6.037172 GCCATTGTTAGAGTTGTGTCGAATAT 59.963 38.462 0.00 0.00 0.00 1.28
3093 6678 7.414098 GCCATTGTTAGAGTTGTGTCGAATATT 60.414 37.037 0.00 0.00 0.00 1.28
3094 6679 7.904977 CCATTGTTAGAGTTGTGTCGAATATTG 59.095 37.037 0.00 0.00 0.00 1.90
3095 6680 7.956420 TTGTTAGAGTTGTGTCGAATATTGT 57.044 32.000 0.00 0.00 0.00 2.71
3096 6681 7.346208 TGTTAGAGTTGTGTCGAATATTGTG 57.654 36.000 0.00 0.00 0.00 3.33
3097 6682 6.926826 TGTTAGAGTTGTGTCGAATATTGTGT 59.073 34.615 0.00 0.00 0.00 3.72
3098 6683 8.083462 TGTTAGAGTTGTGTCGAATATTGTGTA 58.917 33.333 0.00 0.00 0.00 2.90
3099 6684 6.946229 AGAGTTGTGTCGAATATTGTGTAC 57.054 37.500 0.00 0.00 0.00 2.90
3100 6685 6.452242 AGAGTTGTGTCGAATATTGTGTACA 58.548 36.000 0.00 0.00 0.00 2.90
3101 6686 6.926826 AGAGTTGTGTCGAATATTGTGTACAA 59.073 34.615 0.00 0.00 40.51 2.41
3102 6687 7.116376 AGAGTTGTGTCGAATATTGTGTACAAG 59.884 37.037 0.00 0.00 39.47 3.16
3103 6688 6.147164 AGTTGTGTCGAATATTGTGTACAAGG 59.853 38.462 0.00 0.00 39.47 3.61
3104 6689 5.543714 TGTGTCGAATATTGTGTACAAGGT 58.456 37.500 0.00 0.00 39.47 3.50
3105 6690 6.689554 TGTGTCGAATATTGTGTACAAGGTA 58.310 36.000 0.00 0.00 39.47 3.08
3106 6691 6.809689 TGTGTCGAATATTGTGTACAAGGTAG 59.190 38.462 0.00 0.00 39.47 3.18
3107 6692 6.255020 GTGTCGAATATTGTGTACAAGGTAGG 59.745 42.308 0.00 0.00 39.47 3.18
3108 6693 6.071221 TGTCGAATATTGTGTACAAGGTAGGT 60.071 38.462 0.00 0.00 39.47 3.08
3109 6694 6.815142 GTCGAATATTGTGTACAAGGTAGGTT 59.185 38.462 0.00 0.00 39.47 3.50
3110 6695 7.975616 GTCGAATATTGTGTACAAGGTAGGTTA 59.024 37.037 0.00 0.00 39.47 2.85
3111 6696 7.975616 TCGAATATTGTGTACAAGGTAGGTTAC 59.024 37.037 0.00 0.00 39.47 2.50
3112 6697 7.760794 CGAATATTGTGTACAAGGTAGGTTACA 59.239 37.037 0.00 0.00 39.47 2.41
3113 6698 9.439500 GAATATTGTGTACAAGGTAGGTTACAA 57.561 33.333 0.00 0.00 39.47 2.41
3114 6699 9.969001 AATATTGTGTACAAGGTAGGTTACAAT 57.031 29.630 0.00 0.00 39.47 2.71
3115 6700 9.969001 ATATTGTGTACAAGGTAGGTTACAATT 57.031 29.630 0.00 0.00 39.47 2.32
3116 6701 7.499321 TTGTGTACAAGGTAGGTTACAATTG 57.501 36.000 3.24 3.24 34.79 2.32
3117 6702 5.998981 TGTGTACAAGGTAGGTTACAATTGG 59.001 40.000 10.83 0.00 33.66 3.16
3118 6703 6.183361 TGTGTACAAGGTAGGTTACAATTGGA 60.183 38.462 10.83 0.00 33.66 3.53
3119 6704 6.148315 GTGTACAAGGTAGGTTACAATTGGAC 59.852 42.308 10.83 7.95 39.38 4.02
3120 6705 5.578157 ACAAGGTAGGTTACAATTGGACT 57.422 39.130 10.83 4.72 33.66 3.85
3121 6706 5.948842 ACAAGGTAGGTTACAATTGGACTT 58.051 37.500 10.83 7.18 33.66 3.01
3122 6707 6.370453 ACAAGGTAGGTTACAATTGGACTTT 58.630 36.000 10.83 4.26 33.66 2.66
3123 6708 6.264518 ACAAGGTAGGTTACAATTGGACTTTG 59.735 38.462 10.83 11.62 33.66 2.77
3124 6709 6.195600 AGGTAGGTTACAATTGGACTTTGA 57.804 37.500 10.83 0.00 0.00 2.69
3125 6710 6.238648 AGGTAGGTTACAATTGGACTTTGAG 58.761 40.000 10.83 0.00 0.00 3.02
3126 6711 6.002082 GGTAGGTTACAATTGGACTTTGAGT 58.998 40.000 10.83 0.00 0.00 3.41
3127 6712 7.016858 AGGTAGGTTACAATTGGACTTTGAGTA 59.983 37.037 10.83 0.00 0.00 2.59
3128 6713 7.333672 GGTAGGTTACAATTGGACTTTGAGTAG 59.666 40.741 10.83 0.00 0.00 2.57
3129 6714 6.838382 AGGTTACAATTGGACTTTGAGTAGT 58.162 36.000 10.83 0.00 0.00 2.73
3130 6715 7.970102 AGGTTACAATTGGACTTTGAGTAGTA 58.030 34.615 10.83 0.00 0.00 1.82
3131 6716 8.603304 AGGTTACAATTGGACTTTGAGTAGTAT 58.397 33.333 10.83 0.00 0.00 2.12
3132 6717 9.227777 GGTTACAATTGGACTTTGAGTAGTATT 57.772 33.333 10.83 0.00 0.00 1.89
3134 6719 9.787435 TTACAATTGGACTTTGAGTAGTATTGT 57.213 29.630 10.83 0.00 36.80 2.71
3135 6720 8.099364 ACAATTGGACTTTGAGTAGTATTGTG 57.901 34.615 10.83 0.00 34.23 3.33
3136 6721 7.719633 ACAATTGGACTTTGAGTAGTATTGTGT 59.280 33.333 10.83 0.00 34.23 3.72
3137 6722 8.567948 CAATTGGACTTTGAGTAGTATTGTGTT 58.432 33.333 0.00 0.00 0.00 3.32
3138 6723 8.691661 ATTGGACTTTGAGTAGTATTGTGTTT 57.308 30.769 0.00 0.00 0.00 2.83
3139 6724 9.787435 ATTGGACTTTGAGTAGTATTGTGTTTA 57.213 29.630 0.00 0.00 0.00 2.01
3140 6725 8.597662 TGGACTTTGAGTAGTATTGTGTTTAC 57.402 34.615 0.00 0.00 0.00 2.01
3141 6726 8.205512 TGGACTTTGAGTAGTATTGTGTTTACA 58.794 33.333 0.00 0.00 34.31 2.41
3142 6727 9.216117 GGACTTTGAGTAGTATTGTGTTTACAT 57.784 33.333 0.00 0.00 36.53 2.29
3154 6739 9.998106 GTATTGTGTTTACATAGGATATGGAGT 57.002 33.333 2.15 0.00 36.53 3.85
3156 6741 6.745116 TGTGTTTACATAGGATATGGAGTCG 58.255 40.000 2.15 0.00 0.00 4.18
3157 6742 6.322969 TGTGTTTACATAGGATATGGAGTCGT 59.677 38.462 2.15 0.00 0.00 4.34
3158 6743 6.641314 GTGTTTACATAGGATATGGAGTCGTG 59.359 42.308 2.15 0.00 0.00 4.35
3159 6744 6.322969 TGTTTACATAGGATATGGAGTCGTGT 59.677 38.462 2.15 0.00 0.00 4.49
3160 6745 6.570672 TTACATAGGATATGGAGTCGTGTC 57.429 41.667 2.15 0.00 0.00 3.67
3161 6746 3.827302 ACATAGGATATGGAGTCGTGTCC 59.173 47.826 2.15 2.82 39.58 4.02
3162 6747 2.757894 AGGATATGGAGTCGTGTCCT 57.242 50.000 6.63 6.63 43.11 3.85
3163 6748 3.878237 AGGATATGGAGTCGTGTCCTA 57.122 47.619 9.72 0.00 45.13 2.94
3164 6749 4.180377 AGGATATGGAGTCGTGTCCTAA 57.820 45.455 9.72 0.00 45.13 2.69
3165 6750 4.742012 AGGATATGGAGTCGTGTCCTAAT 58.258 43.478 9.72 1.75 45.13 1.73
3166 6751 5.888901 AGGATATGGAGTCGTGTCCTAATA 58.111 41.667 9.72 0.00 45.13 0.98
3167 6752 5.946972 AGGATATGGAGTCGTGTCCTAATAG 59.053 44.000 9.72 0.00 45.13 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.269643 CCCCTCCTAGACCCATTTTCTTT 59.730 47.826 0.00 0.00 0.00 2.52
3 4 2.493091 CCCCTCCTAGACCCATTTTCT 58.507 52.381 0.00 0.00 0.00 2.52
4 5 1.495148 CCCCCTCCTAGACCCATTTTC 59.505 57.143 0.00 0.00 0.00 2.29
5 6 1.608425 CCCCCTCCTAGACCCATTTT 58.392 55.000 0.00 0.00 0.00 1.82
21 22 4.185286 CGACCCCCGAAATCCCCC 62.185 72.222 0.00 0.00 41.76 5.40
22 23 4.185286 CCGACCCCCGAAATCCCC 62.185 72.222 0.00 0.00 41.76 4.81
23 24 4.185286 CCCGACCCCCGAAATCCC 62.185 72.222 0.00 0.00 41.76 3.85
24 25 4.185286 CCCCGACCCCCGAAATCC 62.185 72.222 0.00 0.00 41.76 3.01
25 26 3.405318 ACCCCGACCCCCGAAATC 61.405 66.667 0.00 0.00 41.76 2.17
26 27 3.723922 CACCCCGACCCCCGAAAT 61.724 66.667 0.00 0.00 41.76 2.17
27 28 4.958158 TCACCCCGACCCCCGAAA 62.958 66.667 0.00 0.00 41.76 3.46
28 29 4.958158 TTCACCCCGACCCCCGAA 62.958 66.667 0.00 0.00 41.76 4.30
32 33 3.400054 CTCCTTCACCCCGACCCC 61.400 72.222 0.00 0.00 0.00 4.95
33 34 2.606826 ACTCCTTCACCCCGACCC 60.607 66.667 0.00 0.00 0.00 4.46
34 35 2.657066 GGACTCCTTCACCCCGACC 61.657 68.421 0.00 0.00 0.00 4.79
35 36 0.324091 TAGGACTCCTTCACCCCGAC 60.324 60.000 1.94 0.00 34.61 4.79
36 37 0.324091 GTAGGACTCCTTCACCCCGA 60.324 60.000 1.94 0.00 34.61 5.14
37 38 1.664321 CGTAGGACTCCTTCACCCCG 61.664 65.000 1.94 0.00 34.61 5.73
38 39 0.614134 ACGTAGGACTCCTTCACCCC 60.614 60.000 1.94 0.00 34.61 4.95
39 40 0.531200 CACGTAGGACTCCTTCACCC 59.469 60.000 1.94 0.00 34.61 4.61
40 41 1.201880 GTCACGTAGGACTCCTTCACC 59.798 57.143 1.94 0.00 34.61 4.02
41 42 2.095161 CAGTCACGTAGGACTCCTTCAC 60.095 54.545 1.94 0.00 46.05 3.18
42 43 2.160205 CAGTCACGTAGGACTCCTTCA 58.840 52.381 1.94 0.00 46.05 3.02
43 44 1.473278 CCAGTCACGTAGGACTCCTTC 59.527 57.143 1.94 0.00 46.05 3.46
44 45 1.203025 ACCAGTCACGTAGGACTCCTT 60.203 52.381 1.94 0.00 46.05 3.36
45 46 0.404812 ACCAGTCACGTAGGACTCCT 59.595 55.000 5.62 2.31 46.05 3.69
46 47 0.526662 CACCAGTCACGTAGGACTCC 59.473 60.000 5.62 0.00 46.05 3.85
47 48 1.199558 GACACCAGTCACGTAGGACTC 59.800 57.143 5.62 0.00 46.05 3.36
49 50 0.243095 GGACACCAGTCACGTAGGAC 59.757 60.000 0.00 0.00 46.80 3.85
50 51 1.239296 CGGACACCAGTCACGTAGGA 61.239 60.000 0.00 0.00 46.80 2.94
51 52 1.211969 CGGACACCAGTCACGTAGG 59.788 63.158 0.00 0.00 46.80 3.18
52 53 1.211969 CCGGACACCAGTCACGTAG 59.788 63.158 0.00 0.00 46.80 3.51
53 54 1.228215 TCCGGACACCAGTCACGTA 60.228 57.895 0.00 0.00 46.80 3.57
54 55 2.520020 TCCGGACACCAGTCACGT 60.520 61.111 0.00 0.00 46.80 4.49
55 56 2.049433 GTCCGGACACCAGTCACG 60.049 66.667 29.75 0.00 46.80 4.35
56 57 1.289380 GAGTCCGGACACCAGTCAC 59.711 63.158 35.00 6.70 46.80 3.67
57 58 1.906824 GGAGTCCGGACACCAGTCA 60.907 63.158 37.12 0.00 46.80 3.41
58 59 1.906824 TGGAGTCCGGACACCAGTC 60.907 63.158 39.80 26.25 45.03 3.51
59 60 2.200370 TGGAGTCCGGACACCAGT 59.800 61.111 39.80 20.31 45.03 4.00
62 63 2.391724 TTTGCTGGAGTCCGGACACC 62.392 60.000 36.04 36.04 41.59 4.16
63 64 0.951040 CTTTGCTGGAGTCCGGACAC 60.951 60.000 35.00 28.67 29.82 3.67
64 65 1.371183 CTTTGCTGGAGTCCGGACA 59.629 57.895 35.00 15.10 29.82 4.02
65 66 1.376037 CCTTTGCTGGAGTCCGGAC 60.376 63.158 27.67 27.67 29.82 4.79
66 67 3.068881 CCTTTGCTGGAGTCCGGA 58.931 61.111 22.95 0.00 29.82 5.14
67 68 2.747855 GCCTTTGCTGGAGTCCGG 60.748 66.667 14.25 14.25 33.53 5.14
68 69 2.747855 GGCCTTTGCTGGAGTCCG 60.748 66.667 4.30 0.44 37.74 4.79
69 70 2.361737 GGGCCTTTGCTGGAGTCC 60.362 66.667 0.84 0.73 37.74 3.85
70 71 2.361737 GGGGCCTTTGCTGGAGTC 60.362 66.667 0.84 0.00 37.74 3.36
71 72 3.984732 GGGGGCCTTTGCTGGAGT 61.985 66.667 0.84 0.00 37.74 3.85
111 112 2.248835 CGGTCCGGACGCACTTTTT 61.249 57.895 27.68 0.00 0.00 1.94
112 113 2.663852 CGGTCCGGACGCACTTTT 60.664 61.111 27.68 0.00 0.00 2.27
127 128 1.162181 TACATCCGTCTACCGAGCGG 61.162 60.000 7.48 7.48 41.15 5.52
128 129 0.235144 CTACATCCGTCTACCGAGCG 59.765 60.000 0.00 0.00 39.56 5.03
129 130 0.592148 CCTACATCCGTCTACCGAGC 59.408 60.000 0.00 0.00 39.56 5.03
130 131 0.592148 GCCTACATCCGTCTACCGAG 59.408 60.000 0.00 0.00 39.56 4.63
131 132 0.820891 GGCCTACATCCGTCTACCGA 60.821 60.000 0.00 0.00 39.56 4.69
132 133 1.658673 GGCCTACATCCGTCTACCG 59.341 63.158 0.00 0.00 0.00 4.02
133 134 0.757935 TGGGCCTACATCCGTCTACC 60.758 60.000 4.53 0.00 0.00 3.18
134 135 0.388294 GTGGGCCTACATCCGTCTAC 59.612 60.000 15.42 0.00 0.00 2.59
135 136 0.032912 TGTGGGCCTACATCCGTCTA 60.033 55.000 19.36 0.00 0.00 2.59
136 137 0.691078 ATGTGGGCCTACATCCGTCT 60.691 55.000 27.67 6.95 36.60 4.18
137 138 0.180406 AATGTGGGCCTACATCCGTC 59.820 55.000 32.17 0.00 40.24 4.79
138 139 0.107214 CAATGTGGGCCTACATCCGT 60.107 55.000 32.17 16.40 40.24 4.69
139 140 0.819259 CCAATGTGGGCCTACATCCG 60.819 60.000 32.17 24.86 40.24 4.18
140 141 0.550914 TCCAATGTGGGCCTACATCC 59.449 55.000 32.17 0.81 40.24 3.51
141 142 2.233271 CATCCAATGTGGGCCTACATC 58.767 52.381 32.17 1.22 40.24 3.06
142 143 1.133388 CCATCCAATGTGGGCCTACAT 60.133 52.381 27.67 27.67 42.82 2.29
143 144 0.258484 CCATCCAATGTGGGCCTACA 59.742 55.000 25.43 25.43 38.32 2.74
144 145 1.109323 GCCATCCAATGTGGGCCTAC 61.109 60.000 13.24 13.24 40.55 3.18
145 146 1.229927 GCCATCCAATGTGGGCCTA 59.770 57.895 4.53 0.00 40.55 3.93
146 147 2.042639 GCCATCCAATGTGGGCCT 60.043 61.111 4.53 0.00 40.55 5.19
147 148 0.469705 TATGCCATCCAATGTGGGCC 60.470 55.000 0.00 0.00 45.83 5.80
148 149 1.069049 GTTATGCCATCCAATGTGGGC 59.931 52.381 0.00 0.00 46.58 5.36
149 150 2.386779 TGTTATGCCATCCAATGTGGG 58.613 47.619 0.00 0.00 38.32 4.61
150 151 3.385433 ACATGTTATGCCATCCAATGTGG 59.615 43.478 0.00 0.00 39.43 4.17
151 152 4.500205 GGACATGTTATGCCATCCAATGTG 60.500 45.833 0.00 0.00 0.00 3.21
152 153 3.638160 GGACATGTTATGCCATCCAATGT 59.362 43.478 0.00 0.25 0.00 2.71
153 154 3.304861 CGGACATGTTATGCCATCCAATG 60.305 47.826 0.00 0.00 0.00 2.82
154 155 2.886523 CGGACATGTTATGCCATCCAAT 59.113 45.455 0.00 0.00 0.00 3.16
155 156 2.296792 CGGACATGTTATGCCATCCAA 58.703 47.619 0.00 0.00 0.00 3.53
156 157 1.476652 CCGGACATGTTATGCCATCCA 60.477 52.381 0.00 0.00 0.00 3.41
157 158 1.202758 TCCGGACATGTTATGCCATCC 60.203 52.381 0.00 0.00 0.00 3.51
158 159 2.254546 TCCGGACATGTTATGCCATC 57.745 50.000 0.00 0.00 0.00 3.51
159 160 2.783135 GATCCGGACATGTTATGCCAT 58.217 47.619 6.12 0.00 0.00 4.40
160 161 1.540146 CGATCCGGACATGTTATGCCA 60.540 52.381 6.12 0.00 0.00 4.92
161 162 1.148310 CGATCCGGACATGTTATGCC 58.852 55.000 6.12 0.00 0.00 4.40
162 163 1.865865 ACGATCCGGACATGTTATGC 58.134 50.000 6.12 0.00 0.00 3.14
163 164 3.972403 TGTACGATCCGGACATGTTATG 58.028 45.455 6.12 0.00 46.30 1.90
180 181 2.394136 CGTGCGTGCGGATTGTAC 59.606 61.111 0.00 0.00 0.00 2.90
181 182 3.483665 GCGTGCGTGCGGATTGTA 61.484 61.111 3.30 0.00 0.00 2.41
194 195 4.778415 CCTCGAGTGACCCGCGTG 62.778 72.222 12.31 0.00 37.64 5.34
196 197 3.471244 GATCCTCGAGTGACCCGCG 62.471 68.421 12.31 0.00 37.75 6.46
197 198 2.343163 CTGATCCTCGAGTGACCCGC 62.343 65.000 12.31 1.01 0.00 6.13
198 199 1.032657 ACTGATCCTCGAGTGACCCG 61.033 60.000 12.31 0.00 0.00 5.28
199 200 0.457851 CACTGATCCTCGAGTGACCC 59.542 60.000 12.31 5.22 41.90 4.46
200 201 1.178276 ACACTGATCCTCGAGTGACC 58.822 55.000 15.66 0.00 41.90 4.02
201 202 2.600731 CAACACTGATCCTCGAGTGAC 58.399 52.381 15.66 2.49 41.90 3.67
202 203 1.546029 CCAACACTGATCCTCGAGTGA 59.454 52.381 15.66 8.82 41.90 3.41
203 204 1.546029 TCCAACACTGATCCTCGAGTG 59.454 52.381 12.31 8.88 44.38 3.51
204 205 1.821753 CTCCAACACTGATCCTCGAGT 59.178 52.381 12.31 0.00 0.00 4.18
205 206 2.095461 TCTCCAACACTGATCCTCGAG 58.905 52.381 5.13 5.13 0.00 4.04
206 207 2.215942 TCTCCAACACTGATCCTCGA 57.784 50.000 0.00 0.00 0.00 4.04
207 208 2.819115 CATCTCCAACACTGATCCTCG 58.181 52.381 0.00 0.00 0.00 4.63
208 209 2.559440 GCATCTCCAACACTGATCCTC 58.441 52.381 0.00 0.00 0.00 3.71
209 210 1.211457 GGCATCTCCAACACTGATCCT 59.789 52.381 0.00 0.00 34.01 3.24
210 211 1.673168 GGCATCTCCAACACTGATCC 58.327 55.000 0.00 0.00 34.01 3.36
211 212 1.211457 AGGGCATCTCCAACACTGATC 59.789 52.381 0.00 0.00 36.21 2.92
212 213 1.293062 AGGGCATCTCCAACACTGAT 58.707 50.000 0.00 0.00 36.21 2.90
213 214 1.951209 TAGGGCATCTCCAACACTGA 58.049 50.000 0.00 0.00 36.21 3.41
214 215 2.290260 TGTTAGGGCATCTCCAACACTG 60.290 50.000 0.00 0.00 36.21 3.66
215 216 1.985159 TGTTAGGGCATCTCCAACACT 59.015 47.619 0.00 0.00 36.21 3.55
216 217 2.489938 TGTTAGGGCATCTCCAACAC 57.510 50.000 0.00 0.00 36.21 3.32
217 218 3.737559 AATGTTAGGGCATCTCCAACA 57.262 42.857 0.00 0.00 34.71 3.33
218 219 5.827797 TCAATAATGTTAGGGCATCTCCAAC 59.172 40.000 0.00 0.00 36.21 3.77
219 220 6.012337 TCAATAATGTTAGGGCATCTCCAA 57.988 37.500 0.00 0.00 36.21 3.53
220 221 5.645056 TCAATAATGTTAGGGCATCTCCA 57.355 39.130 0.00 0.00 36.21 3.86
221 222 6.959639 TTTCAATAATGTTAGGGCATCTCC 57.040 37.500 0.00 0.00 0.00 3.71
222 223 8.000780 ACTTTTCAATAATGTTAGGGCATCTC 57.999 34.615 0.00 0.00 0.00 2.75
223 224 7.836183 AGACTTTTCAATAATGTTAGGGCATCT 59.164 33.333 0.00 0.00 0.00 2.90
224 225 8.000780 AGACTTTTCAATAATGTTAGGGCATC 57.999 34.615 0.00 0.00 0.00 3.91
225 226 7.961326 AGACTTTTCAATAATGTTAGGGCAT 57.039 32.000 0.00 0.00 0.00 4.40
226 227 8.871629 TTAGACTTTTCAATAATGTTAGGGCA 57.128 30.769 0.00 0.00 0.00 5.36
259 260 9.230122 TGACACTGATGCTTTTATTATTTCTGA 57.770 29.630 0.00 0.00 0.00 3.27
260 261 9.282247 GTGACACTGATGCTTTTATTATTTCTG 57.718 33.333 0.00 0.00 0.00 3.02
261 262 8.462016 GGTGACACTGATGCTTTTATTATTTCT 58.538 33.333 5.39 0.00 0.00 2.52
262 263 8.243426 TGGTGACACTGATGCTTTTATTATTTC 58.757 33.333 5.39 0.00 33.40 2.17
263 264 8.121305 TGGTGACACTGATGCTTTTATTATTT 57.879 30.769 5.39 0.00 33.40 1.40
264 265 7.701539 TGGTGACACTGATGCTTTTATTATT 57.298 32.000 5.39 0.00 33.40 1.40
286 287 2.362889 GGAACCAGCCCACCATGG 60.363 66.667 11.19 11.19 42.60 3.66
287 288 1.978617 GTGGAACCAGCCCACCATG 60.979 63.158 0.00 0.00 46.30 3.66
288 289 2.440599 GTGGAACCAGCCCACCAT 59.559 61.111 0.00 0.00 46.30 3.55
299 300 3.507786 GTTGAGTTTTGTGTGGTGGAAC 58.492 45.455 0.00 0.00 0.00 3.62
300 301 2.494073 GGTTGAGTTTTGTGTGGTGGAA 59.506 45.455 0.00 0.00 0.00 3.53
301 302 2.096248 GGTTGAGTTTTGTGTGGTGGA 58.904 47.619 0.00 0.00 0.00 4.02
302 303 1.821753 TGGTTGAGTTTTGTGTGGTGG 59.178 47.619 0.00 0.00 0.00 4.61
303 304 3.119173 ACATGGTTGAGTTTTGTGTGGTG 60.119 43.478 0.00 0.00 0.00 4.17
304 305 3.096092 ACATGGTTGAGTTTTGTGTGGT 58.904 40.909 0.00 0.00 0.00 4.16
305 306 3.799281 ACATGGTTGAGTTTTGTGTGG 57.201 42.857 0.00 0.00 0.00 4.17
306 307 4.739716 GCTTACATGGTTGAGTTTTGTGTG 59.260 41.667 0.00 0.00 0.00 3.82
307 308 4.644685 AGCTTACATGGTTGAGTTTTGTGT 59.355 37.500 0.00 0.00 0.00 3.72
308 309 5.186996 AGCTTACATGGTTGAGTTTTGTG 57.813 39.130 0.00 0.00 0.00 3.33
309 310 5.473504 CCTAGCTTACATGGTTGAGTTTTGT 59.526 40.000 0.00 0.00 0.00 2.83
310 311 5.619981 GCCTAGCTTACATGGTTGAGTTTTG 60.620 44.000 0.00 0.00 0.00 2.44
311 312 4.459337 GCCTAGCTTACATGGTTGAGTTTT 59.541 41.667 0.00 0.00 0.00 2.43
312 313 4.010349 GCCTAGCTTACATGGTTGAGTTT 58.990 43.478 0.00 0.00 0.00 2.66
313 314 3.264450 AGCCTAGCTTACATGGTTGAGTT 59.736 43.478 0.00 0.00 33.89 3.01
314 315 2.840651 AGCCTAGCTTACATGGTTGAGT 59.159 45.455 0.00 0.00 33.89 3.41
315 316 3.118629 TGAGCCTAGCTTACATGGTTGAG 60.119 47.826 0.00 0.00 39.88 3.02
316 317 2.837591 TGAGCCTAGCTTACATGGTTGA 59.162 45.455 0.00 0.00 39.88 3.18
317 318 3.201290 CTGAGCCTAGCTTACATGGTTG 58.799 50.000 0.00 0.00 39.88 3.77
318 319 2.840651 ACTGAGCCTAGCTTACATGGTT 59.159 45.455 0.00 0.00 39.88 3.67
319 320 2.472029 ACTGAGCCTAGCTTACATGGT 58.528 47.619 0.00 0.00 39.88 3.55
320 321 3.118629 TGAACTGAGCCTAGCTTACATGG 60.119 47.826 0.00 0.00 39.88 3.66
321 322 3.868077 GTGAACTGAGCCTAGCTTACATG 59.132 47.826 0.00 0.00 39.88 3.21
322 323 3.772025 AGTGAACTGAGCCTAGCTTACAT 59.228 43.478 0.00 0.00 39.88 2.29
323 324 3.165875 AGTGAACTGAGCCTAGCTTACA 58.834 45.455 0.00 0.00 39.88 2.41
324 325 3.878160 AGTGAACTGAGCCTAGCTTAC 57.122 47.619 0.00 0.00 39.88 2.34
325 326 4.283467 TGAAAGTGAACTGAGCCTAGCTTA 59.717 41.667 0.00 0.00 39.88 3.09
326 327 3.071602 TGAAAGTGAACTGAGCCTAGCTT 59.928 43.478 0.00 0.00 39.88 3.74
327 328 2.634940 TGAAAGTGAACTGAGCCTAGCT 59.365 45.455 0.00 0.00 43.88 3.32
328 329 3.045601 TGAAAGTGAACTGAGCCTAGC 57.954 47.619 0.00 0.00 0.00 3.42
329 330 3.373439 GCATGAAAGTGAACTGAGCCTAG 59.627 47.826 0.00 0.00 0.00 3.02
330 331 3.338249 GCATGAAAGTGAACTGAGCCTA 58.662 45.455 0.00 0.00 0.00 3.93
331 332 2.157738 GCATGAAAGTGAACTGAGCCT 58.842 47.619 0.00 0.00 0.00 4.58
332 333 1.200948 GGCATGAAAGTGAACTGAGCC 59.799 52.381 0.00 0.00 0.00 4.70
333 334 1.881973 TGGCATGAAAGTGAACTGAGC 59.118 47.619 0.00 0.00 0.00 4.26
334 335 3.144506 AGTGGCATGAAAGTGAACTGAG 58.855 45.455 0.00 0.00 0.00 3.35
335 336 3.213206 AGTGGCATGAAAGTGAACTGA 57.787 42.857 0.00 0.00 0.00 3.41
336 337 3.996150 AAGTGGCATGAAAGTGAACTG 57.004 42.857 0.00 0.00 0.00 3.16
337 338 5.072741 ACATAAGTGGCATGAAAGTGAACT 58.927 37.500 0.00 0.00 0.00 3.01
338 339 5.376854 ACATAAGTGGCATGAAAGTGAAC 57.623 39.130 0.00 0.00 0.00 3.18
339 340 5.278907 CCAACATAAGTGGCATGAAAGTGAA 60.279 40.000 0.00 0.00 0.00 3.18
340 341 4.218200 CCAACATAAGTGGCATGAAAGTGA 59.782 41.667 0.00 0.00 0.00 3.41
341 342 4.487948 CCAACATAAGTGGCATGAAAGTG 58.512 43.478 0.00 0.00 0.00 3.16
342 343 4.789012 CCAACATAAGTGGCATGAAAGT 57.211 40.909 0.00 0.00 0.00 2.66
351 352 5.764686 TGCAAGATATAGCCAACATAAGTGG 59.235 40.000 0.00 0.00 0.00 4.00
364 365 1.016130 CGGCCGGCTGCAAGATATAG 61.016 60.000 28.56 0.00 43.89 1.31
365 366 1.005037 CGGCCGGCTGCAAGATATA 60.005 57.895 28.56 0.00 43.89 0.86
366 367 2.281070 CGGCCGGCTGCAAGATAT 60.281 61.111 28.56 0.00 43.89 1.63
431 432 1.208776 GTTACTGGGGACTTATGGCGT 59.791 52.381 0.00 0.00 0.00 5.68
432 433 1.474498 GGTTACTGGGGACTTATGGCG 60.474 57.143 0.00 0.00 0.00 5.69
433 434 1.844497 AGGTTACTGGGGACTTATGGC 59.156 52.381 0.00 0.00 0.00 4.40
509 518 0.110688 CGTCGTGCTGTGGTTGAATG 60.111 55.000 0.00 0.00 0.00 2.67
510 519 0.249699 TCGTCGTGCTGTGGTTGAAT 60.250 50.000 0.00 0.00 0.00 2.57
512 521 0.943835 CATCGTCGTGCTGTGGTTGA 60.944 55.000 0.00 0.00 0.00 3.18
513 522 1.492873 CATCGTCGTGCTGTGGTTG 59.507 57.895 0.00 0.00 0.00 3.77
514 523 1.667830 CCATCGTCGTGCTGTGGTT 60.668 57.895 0.00 0.00 0.00 3.67
522 533 1.993370 GGAAAGAACTCCATCGTCGTG 59.007 52.381 0.00 0.00 35.36 4.35
527 538 5.627499 TTTGATTGGAAAGAACTCCATCG 57.373 39.130 0.00 0.00 45.03 3.84
549 560 1.235724 GGACCTGTAAAAGCGTTGCT 58.764 50.000 0.00 0.00 42.56 3.91
550 561 0.110373 CGGACCTGTAAAAGCGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
585 618 1.287425 GTACATGTGCTAGGTTCGGC 58.713 55.000 9.11 0.00 0.00 5.54
639 689 7.555914 TCCCTGATCTGATCTATCTTTCTATCG 59.444 40.741 17.82 0.00 0.00 2.92
646 696 4.359528 TCCCTCCCTGATCTGATCTATCTT 59.640 45.833 17.82 0.00 0.00 2.40
710 765 4.473520 CCTGGTGGTAGGCGCTGG 62.474 72.222 7.64 0.00 0.00 4.85
860 923 2.913203 ACTAGATGGAGGGATGGATGG 58.087 52.381 0.00 0.00 0.00 3.51
862 925 3.567663 GGCTACTAGATGGAGGGATGGAT 60.568 52.174 0.00 0.00 0.00 3.41
863 926 2.225394 GGCTACTAGATGGAGGGATGGA 60.225 54.545 0.00 0.00 0.00 3.41
864 927 2.183679 GGCTACTAGATGGAGGGATGG 58.816 57.143 0.00 0.00 0.00 3.51
866 929 1.429687 ACGGCTACTAGATGGAGGGAT 59.570 52.381 0.00 0.00 0.00 3.85
867 930 0.851469 ACGGCTACTAGATGGAGGGA 59.149 55.000 0.00 0.00 0.00 4.20
868 931 0.962489 CACGGCTACTAGATGGAGGG 59.038 60.000 0.00 0.00 0.00 4.30
875 943 2.163010 GCAACTGTACACGGCTACTAGA 59.837 50.000 0.00 0.00 0.00 2.43
988 1057 2.997899 CCTTCATGGTCGATGCCTC 58.002 57.895 0.00 0.00 31.32 4.70
1216 1297 6.349777 CCCAGAAGATCGAGTTACATCTATCC 60.350 46.154 0.00 0.00 0.00 2.59
1224 1305 4.425520 CAGAACCCAGAAGATCGAGTTAC 58.574 47.826 0.00 0.00 0.00 2.50
1244 1333 1.233285 GGCACTCACACAGAAGCCAG 61.233 60.000 0.00 0.00 42.72 4.85
1263 1359 0.729140 GCCACTTTTCACGGCAATCG 60.729 55.000 0.00 0.00 45.52 3.34
1274 1370 2.032071 CTCCCGTCCGCCACTTTT 59.968 61.111 0.00 0.00 0.00 2.27
1297 1397 2.949106 CCCAGCACACGAAGCAAG 59.051 61.111 0.00 0.00 0.00 4.01
1301 1401 3.730761 GCAGCCCAGCACACGAAG 61.731 66.667 0.00 0.00 0.00 3.79
1302 1402 4.560743 TGCAGCCCAGCACACGAA 62.561 61.111 0.00 0.00 40.11 3.85
1395 1495 3.835955 ATGCTGAGCTCGCTCGCT 61.836 61.111 24.04 14.22 45.48 4.93
1584 1717 1.002624 CACGTGCCACCCTGGTAAT 60.003 57.895 0.82 0.00 40.46 1.89
1590 1723 4.954118 TCCTCCACGTGCCACCCT 62.954 66.667 10.91 0.00 0.00 4.34
1652 1788 1.811679 GAAGAGAAGCCGGCGGAAG 60.812 63.158 33.44 3.04 0.00 3.46
1653 1789 2.264794 GAAGAGAAGCCGGCGGAA 59.735 61.111 33.44 0.00 0.00 4.30
1752 1889 2.494059 TGCAGCGTTTCTAGCTTTCTT 58.506 42.857 0.00 0.00 44.06 2.52
1769 1906 1.225376 GACGTGACCGGAACATTGCA 61.225 55.000 9.46 0.00 38.78 4.08
1826 1964 1.643310 AACCACAAACCATCCCCATG 58.357 50.000 0.00 0.00 0.00 3.66
1944 2085 6.202570 TCCAAAGATGTAAATTTTGCTTGTGC 59.797 34.615 0.00 0.00 40.20 4.57
1965 2106 6.096987 GTGACTGGTTCTAGTAGATGATCCAA 59.903 42.308 0.00 0.00 33.34 3.53
1975 2116 5.047519 GCCAAGTTAGTGACTGGTTCTAGTA 60.048 44.000 0.00 0.00 39.00 1.82
1977 2118 4.021016 AGCCAAGTTAGTGACTGGTTCTAG 60.021 45.833 0.00 0.00 39.00 2.43
1978 2119 3.901844 AGCCAAGTTAGTGACTGGTTCTA 59.098 43.478 0.00 0.00 39.00 2.10
1985 2126 2.104281 ACCGAAAGCCAAGTTAGTGACT 59.896 45.455 0.00 0.00 41.47 3.41
1988 2129 2.489971 TCACCGAAAGCCAAGTTAGTG 58.510 47.619 0.00 0.00 0.00 2.74
2015 2156 1.903183 AGTTCCTACTCCCTGCTCAAC 59.097 52.381 0.00 0.00 0.00 3.18
2149 2290 0.888736 TTCACCAGTGTGGATTGGCG 60.889 55.000 0.00 0.00 40.96 5.69
2204 2345 3.681897 CAGCATATTAACTCCGATCCAGC 59.318 47.826 0.00 0.00 0.00 4.85
2248 2389 1.869767 GCCCGAAACAGCATCATCTAG 59.130 52.381 0.00 0.00 0.00 2.43
2249 2390 1.486310 AGCCCGAAACAGCATCATCTA 59.514 47.619 0.00 0.00 0.00 1.98
2250 2391 0.254178 AGCCCGAAACAGCATCATCT 59.746 50.000 0.00 0.00 0.00 2.90
2258 2399 3.377172 CCCAGTAATTAAGCCCGAAACAG 59.623 47.826 0.00 0.00 0.00 3.16
2275 2416 2.597510 GGGAGCGCAAAACCCAGT 60.598 61.111 21.08 0.00 42.81 4.00
2315 2456 3.353836 CACGAGCACCCCCAAACG 61.354 66.667 0.00 0.00 0.00 3.60
2323 2464 0.040067 CCTCAAAAAGCACGAGCACC 60.040 55.000 7.77 0.00 45.49 5.01
2325 2466 0.819259 AGCCTCAAAAAGCACGAGCA 60.819 50.000 7.77 0.00 45.49 4.26
2362 2503 5.825151 ACTCAGGAGAAAAGCATATAAAGGC 59.175 40.000 2.79 0.00 0.00 4.35
2383 2524 3.004944 TCACGTATTTGGGGCAAAAACTC 59.995 43.478 0.00 0.00 36.90 3.01
2396 2549 5.334724 ACGACTCCCTTATTCACGTATTT 57.665 39.130 0.00 0.00 0.00 1.40
2476 2629 3.053896 GGTACCCAAGCACACGCC 61.054 66.667 0.00 0.00 39.83 5.68
2503 2656 5.047590 TCTCTCTACGCCATTTACACTCAAA 60.048 40.000 0.00 0.00 0.00 2.69
2508 2661 4.933330 TGATCTCTCTACGCCATTTACAC 58.067 43.478 0.00 0.00 0.00 2.90
2521 2674 8.303780 TCACATATCTTCAGTTTGATCTCTCT 57.696 34.615 0.00 0.00 0.00 3.10
2539 2692 3.650281 TCATTGCACACCCTCACATAT 57.350 42.857 0.00 0.00 0.00 1.78
2599 2752 1.136690 TGTGACACAAGATTCGTCGC 58.863 50.000 5.62 0.00 39.92 5.19
2644 2797 0.482446 ACAATGAGGGAGGTTTGCCA 59.518 50.000 0.00 0.00 37.25 4.92
2683 2836 4.514781 TTAGTGCTTCACATCGTGTACT 57.485 40.909 0.00 0.00 36.74 2.73
2704 2857 3.221771 TGATACAGCTTGTTGCCTGTTT 58.778 40.909 0.00 0.00 44.23 2.83
2721 2874 3.518634 TCGTATGCTGCAACACTGATA 57.481 42.857 6.36 0.00 0.00 2.15
2752 2905 5.544948 TGTACTAGTCTTTGGTGGGTATTGT 59.455 40.000 0.00 0.00 0.00 2.71
2786 4362 7.021196 GCAATGACGTTTGCTTTCTATCTTAA 58.979 34.615 15.94 0.00 46.66 1.85
2824 4400 1.167851 AAGTCATGGGTGATGCGTTG 58.832 50.000 0.00 0.00 36.60 4.10
2842 4418 6.522625 TCGCAATTCCATCCATAAAGAAAA 57.477 33.333 0.00 0.00 0.00 2.29
2892 6460 4.314740 TGAATTTTACACCACACCTTGC 57.685 40.909 0.00 0.00 0.00 4.01
2923 6491 1.597663 CGGTCCAAGTCATAATTCGGC 59.402 52.381 0.00 0.00 0.00 5.54
2936 6504 2.369203 TGTTTCACTCCATACGGTCCAA 59.631 45.455 0.00 0.00 0.00 3.53
2949 6534 1.237285 GGCATGCGAGGTGTTTCACT 61.237 55.000 12.44 0.00 34.40 3.41
2979 6564 2.076863 GCAGCCTACATGACGAAAACT 58.923 47.619 0.00 0.00 0.00 2.66
3005 6590 3.704231 AATGGCGCGAGGGATGCTT 62.704 57.895 12.10 0.00 0.00 3.91
3015 6600 1.297893 GCTTGCTCTAAATGGCGCG 60.298 57.895 0.00 0.00 0.00 6.86
3022 6607 9.565090 ACATCATCTTATTATGCTTGCTCTAAA 57.435 29.630 0.00 0.00 0.00 1.85
3033 6618 6.936279 ACCCCGTCTACATCATCTTATTATG 58.064 40.000 0.00 0.00 0.00 1.90
3072 6657 6.926826 ACACAATATTCGACACAACTCTAACA 59.073 34.615 0.00 0.00 0.00 2.41
3073 6658 7.347508 ACACAATATTCGACACAACTCTAAC 57.652 36.000 0.00 0.00 0.00 2.34
3074 6659 8.083462 TGTACACAATATTCGACACAACTCTAA 58.917 33.333 0.00 0.00 0.00 2.10
3075 6660 7.595604 TGTACACAATATTCGACACAACTCTA 58.404 34.615 0.00 0.00 0.00 2.43
3076 6661 6.452242 TGTACACAATATTCGACACAACTCT 58.548 36.000 0.00 0.00 0.00 3.24
3077 6662 6.699895 TGTACACAATATTCGACACAACTC 57.300 37.500 0.00 0.00 0.00 3.01
3078 6663 6.147164 CCTTGTACACAATATTCGACACAACT 59.853 38.462 0.00 0.00 35.02 3.16
3079 6664 6.073440 ACCTTGTACACAATATTCGACACAAC 60.073 38.462 0.00 0.00 35.02 3.32
3080 6665 5.992829 ACCTTGTACACAATATTCGACACAA 59.007 36.000 0.00 0.00 35.02 3.33
3081 6666 5.543714 ACCTTGTACACAATATTCGACACA 58.456 37.500 0.00 0.00 35.02 3.72
3082 6667 6.255020 CCTACCTTGTACACAATATTCGACAC 59.745 42.308 0.00 0.00 35.02 3.67
3083 6668 6.071221 ACCTACCTTGTACACAATATTCGACA 60.071 38.462 0.00 0.00 35.02 4.35
3084 6669 6.335777 ACCTACCTTGTACACAATATTCGAC 58.664 40.000 0.00 0.00 35.02 4.20
3085 6670 6.534475 ACCTACCTTGTACACAATATTCGA 57.466 37.500 0.00 0.00 35.02 3.71
3086 6671 7.760794 TGTAACCTACCTTGTACACAATATTCG 59.239 37.037 0.00 0.00 35.02 3.34
3087 6672 9.439500 TTGTAACCTACCTTGTACACAATATTC 57.561 33.333 0.00 0.00 35.02 1.75
3088 6673 9.969001 ATTGTAACCTACCTTGTACACAATATT 57.031 29.630 0.00 0.00 33.36 1.28
3089 6674 9.969001 AATTGTAACCTACCTTGTACACAATAT 57.031 29.630 0.00 0.00 33.70 1.28
3090 6675 9.221933 CAATTGTAACCTACCTTGTACACAATA 57.778 33.333 0.00 0.00 33.70 1.90
3091 6676 7.175990 CCAATTGTAACCTACCTTGTACACAAT 59.824 37.037 4.43 0.00 35.07 2.71
3092 6677 6.487331 CCAATTGTAACCTACCTTGTACACAA 59.513 38.462 4.43 0.00 0.00 3.33
3093 6678 5.998981 CCAATTGTAACCTACCTTGTACACA 59.001 40.000 4.43 0.00 0.00 3.72
3094 6679 6.148315 GTCCAATTGTAACCTACCTTGTACAC 59.852 42.308 4.43 0.00 0.00 2.90
3095 6680 6.043474 AGTCCAATTGTAACCTACCTTGTACA 59.957 38.462 4.43 0.00 0.00 2.90
3096 6681 6.470278 AGTCCAATTGTAACCTACCTTGTAC 58.530 40.000 4.43 0.00 0.00 2.90
3097 6682 6.691255 AGTCCAATTGTAACCTACCTTGTA 57.309 37.500 4.43 0.00 0.00 2.41
3098 6683 5.578157 AGTCCAATTGTAACCTACCTTGT 57.422 39.130 4.43 0.00 0.00 3.16
3099 6684 6.488683 TCAAAGTCCAATTGTAACCTACCTTG 59.511 38.462 4.43 0.46 0.00 3.61
3100 6685 6.607019 TCAAAGTCCAATTGTAACCTACCTT 58.393 36.000 4.43 0.00 0.00 3.50
3101 6686 6.183361 ACTCAAAGTCCAATTGTAACCTACCT 60.183 38.462 4.43 0.00 0.00 3.08
3102 6687 6.002082 ACTCAAAGTCCAATTGTAACCTACC 58.998 40.000 4.43 0.00 0.00 3.18
3103 6688 7.876582 ACTACTCAAAGTCCAATTGTAACCTAC 59.123 37.037 4.43 0.00 0.00 3.18
3104 6689 7.970102 ACTACTCAAAGTCCAATTGTAACCTA 58.030 34.615 4.43 0.00 0.00 3.08
3105 6690 6.838382 ACTACTCAAAGTCCAATTGTAACCT 58.162 36.000 4.43 0.00 0.00 3.50
3106 6691 8.788325 ATACTACTCAAAGTCCAATTGTAACC 57.212 34.615 4.43 0.00 0.00 2.85
3108 6693 9.787435 ACAATACTACTCAAAGTCCAATTGTAA 57.213 29.630 4.43 0.00 34.65 2.41
3109 6694 9.214957 CACAATACTACTCAAAGTCCAATTGTA 57.785 33.333 4.43 0.00 34.65 2.41
3110 6695 7.719633 ACACAATACTACTCAAAGTCCAATTGT 59.280 33.333 4.43 0.00 35.72 2.71
3111 6696 8.099364 ACACAATACTACTCAAAGTCCAATTG 57.901 34.615 0.00 0.00 31.93 2.32
3112 6697 8.691661 AACACAATACTACTCAAAGTCCAATT 57.308 30.769 0.00 0.00 0.00 2.32
3113 6698 8.691661 AAACACAATACTACTCAAAGTCCAAT 57.308 30.769 0.00 0.00 0.00 3.16
3114 6699 9.048446 GTAAACACAATACTACTCAAAGTCCAA 57.952 33.333 0.00 0.00 0.00 3.53
3115 6700 8.205512 TGTAAACACAATACTACTCAAAGTCCA 58.794 33.333 0.00 0.00 0.00 4.02
3116 6701 8.597662 TGTAAACACAATACTACTCAAAGTCC 57.402 34.615 0.00 0.00 0.00 3.85
3128 6713 9.998106 ACTCCATATCCTATGTAAACACAATAC 57.002 33.333 0.00 0.00 0.00 1.89
3130 6715 7.872993 CGACTCCATATCCTATGTAAACACAAT 59.127 37.037 0.00 0.00 0.00 2.71
3131 6716 7.147794 ACGACTCCATATCCTATGTAAACACAA 60.148 37.037 0.00 0.00 0.00 3.33
3132 6717 6.322969 ACGACTCCATATCCTATGTAAACACA 59.677 38.462 0.00 0.00 0.00 3.72
3133 6718 6.641314 CACGACTCCATATCCTATGTAAACAC 59.359 42.308 0.00 0.00 0.00 3.32
3134 6719 6.322969 ACACGACTCCATATCCTATGTAAACA 59.677 38.462 0.00 0.00 0.00 2.83
3135 6720 6.746120 ACACGACTCCATATCCTATGTAAAC 58.254 40.000 0.00 0.00 0.00 2.01
3136 6721 6.015688 GGACACGACTCCATATCCTATGTAAA 60.016 42.308 0.00 0.00 0.00 2.01
3137 6722 5.475909 GGACACGACTCCATATCCTATGTAA 59.524 44.000 0.00 0.00 0.00 2.41
3138 6723 5.008331 GGACACGACTCCATATCCTATGTA 58.992 45.833 0.00 0.00 0.00 2.29
3139 6724 3.827302 GGACACGACTCCATATCCTATGT 59.173 47.826 0.00 0.00 0.00 2.29
3140 6725 4.082845 AGGACACGACTCCATATCCTATG 58.917 47.826 6.01 0.00 34.77 2.23
3141 6726 4.390129 AGGACACGACTCCATATCCTAT 57.610 45.455 6.01 0.00 34.77 2.57
3142 6727 3.878237 AGGACACGACTCCATATCCTA 57.122 47.619 6.01 0.00 34.77 2.94
3143 6728 2.757894 AGGACACGACTCCATATCCT 57.242 50.000 6.01 0.00 31.94 3.24
3144 6729 6.197364 CTATTAGGACACGACTCCATATCC 57.803 45.833 6.01 0.00 31.94 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.