Multiple sequence alignment - TraesCS6D01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G221400 chr6D 100.000 6494 0 0 1 6494 312140895 312134402 0.000000e+00 11993.0
1 TraesCS6D01G221400 chr6D 89.744 156 13 2 4478 4633 456337120 456337272 5.140000e-46 196.0
2 TraesCS6D01G221400 chr6B 94.883 4514 167 27 6 4473 514672109 514676604 0.000000e+00 6998.0
3 TraesCS6D01G221400 chr6B 95.881 874 31 4 4637 5510 514676602 514677470 0.000000e+00 1410.0
4 TraesCS6D01G221400 chr6B 91.158 803 51 9 5474 6265 514677468 514678261 0.000000e+00 1072.0
5 TraesCS6D01G221400 chr6B 90.141 142 9 2 6210 6346 514685955 514686096 5.170000e-41 180.0
6 TraesCS6D01G221400 chr6B 94.595 111 5 1 6009 6119 514678269 514678378 3.110000e-38 171.0
7 TraesCS6D01G221400 chr6B 88.571 140 16 0 6352 6491 514686341 514686480 3.110000e-38 171.0
8 TraesCS6D01G221400 chr6A 96.949 3999 92 12 364 4343 448664760 448660773 0.000000e+00 6682.0
9 TraesCS6D01G221400 chr6A 93.297 1671 91 12 4676 6345 448660623 448658973 0.000000e+00 2446.0
10 TraesCS6D01G221400 chr6A 95.210 334 6 7 6 329 448665427 448665094 2.680000e-143 520.0
11 TraesCS6D01G221400 chr6A 93.182 44 3 0 6113 6156 533260191 533260148 1.510000e-06 65.8
12 TraesCS6D01G221400 chr6A 100.000 28 0 0 6127 6154 162998047 162998020 1.200000e-02 52.8
13 TraesCS6D01G221400 chr2D 72.587 1689 349 89 1603 3245 489642252 489640632 3.570000e-122 449.0
14 TraesCS6D01G221400 chr2D 93.798 129 8 0 4460 4588 644141990 644141862 1.850000e-45 195.0
15 TraesCS6D01G221400 chr2D 94.898 98 3 1 4546 4641 189527974 189528071 1.130000e-32 152.0
16 TraesCS6D01G221400 chr2D 94.595 37 1 1 6129 6164 305505649 305505613 1.000000e-03 56.5
17 TraesCS6D01G221400 chr2B 72.529 1700 327 108 1603 3245 573202990 573201374 2.160000e-114 424.0
18 TraesCS6D01G221400 chr1A 95.930 172 3 1 4472 4639 276575091 276575262 6.410000e-70 276.0
19 TraesCS6D01G221400 chr1A 90.173 173 15 1 4470 4640 95827560 95827388 2.360000e-54 224.0
20 TraesCS6D01G221400 chr1A 94.444 36 1 1 6121 6155 385898313 385898348 3.000000e-03 54.7
21 TraesCS6D01G221400 chr7D 92.442 172 8 2 4472 4639 553211006 553211176 2.340000e-59 241.0
22 TraesCS6D01G221400 chr3B 89.941 169 15 1 4472 4640 93718373 93718539 3.940000e-52 217.0
23 TraesCS6D01G221400 chr3B 94.400 125 7 0 4463 4587 749090884 749091008 6.640000e-45 193.0
24 TraesCS6D01G221400 chr3B 94.400 125 7 0 4463 4587 755041664 755041788 6.640000e-45 193.0
25 TraesCS6D01G221400 chr3B 89.116 147 11 3 4443 4587 271190785 271190928 1.860000e-40 178.0
26 TraesCS6D01G221400 chr3B 90.909 44 4 0 6116 6159 207304840 207304883 7.030000e-05 60.2
27 TraesCS6D01G221400 chr4D 89.412 170 16 1 4471 4640 10405945 10405778 5.100000e-51 213.0
28 TraesCS6D01G221400 chr4D 92.254 142 8 1 4446 4587 492804260 492804398 1.430000e-46 198.0
29 TraesCS6D01G221400 chr4D 93.750 128 8 0 4460 4587 108872383 108872510 6.640000e-45 193.0
30 TraesCS6D01G221400 chr1B 96.748 123 4 0 4465 4587 623732118 623731996 8.540000e-49 206.0
31 TraesCS6D01G221400 chr1B 89.011 91 9 1 4586 4676 41091079 41090990 1.910000e-20 111.0
32 TraesCS6D01G221400 chr1B 88.043 92 11 0 4586 4677 314566559 314566468 6.880000e-20 110.0
33 TraesCS6D01G221400 chr3D 91.304 138 9 1 4450 4587 254888560 254888426 1.110000e-42 185.0
34 TraesCS6D01G221400 chr3D 89.130 92 8 2 4586 4676 382747939 382747849 5.320000e-21 113.0
35 TraesCS6D01G221400 chr3D 93.182 44 3 0 6116 6159 143960767 143960810 1.510000e-06 65.8
36 TraesCS6D01G221400 chr5B 89.116 147 11 3 4443 4587 266982305 266982162 1.860000e-40 178.0
37 TraesCS6D01G221400 chr5B 92.135 89 6 1 4588 4676 216649339 216649426 2.460000e-24 124.0
38 TraesCS6D01G221400 chr5B 90.110 91 9 0 4586 4676 327750291 327750201 1.140000e-22 119.0
39 TraesCS6D01G221400 chr5B 100.000 34 0 0 6123 6156 680926690 680926723 5.440000e-06 63.9
40 TraesCS6D01G221400 chr4A 85.057 174 11 4 4472 4645 278325887 278325729 5.210000e-36 163.0
41 TraesCS6D01G221400 chr4A 92.308 91 5 2 4586 4676 1910445 1910533 1.900000e-25 128.0
42 TraesCS6D01G221400 chr4A 90.217 92 9 0 4586 4677 503630498 503630589 3.180000e-23 121.0
43 TraesCS6D01G221400 chr4A 93.182 44 3 0 6114 6157 604032227 604032184 1.510000e-06 65.8
44 TraesCS6D01G221400 chr4A 94.872 39 2 0 6116 6154 101753400 101753438 1.960000e-05 62.1
45 TraesCS6D01G221400 chr1D 92.157 102 6 1 4543 4644 494045086 494045185 6.790000e-30 143.0
46 TraesCS6D01G221400 chr4B 91.209 91 7 1 4586 4676 634413205 634413116 8.840000e-24 122.0
47 TraesCS6D01G221400 chr4B 86.667 60 6 2 6098 6156 277407888 277407946 1.510000e-06 65.8
48 TraesCS6D01G221400 chr7B 89.011 91 9 1 4586 4676 612297740 612297829 1.910000e-20 111.0
49 TraesCS6D01G221400 chrUn 97.368 38 1 0 6122 6159 73917621 73917584 1.510000e-06 65.8
50 TraesCS6D01G221400 chr7A 90.476 42 4 0 6116 6157 192669410 192669451 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G221400 chr6D 312134402 312140895 6493 True 11993.00 11993 100.00000 1 6494 1 chr6D.!!$R1 6493
1 TraesCS6D01G221400 chr6B 514672109 514678378 6269 False 2412.75 6998 94.12925 6 6265 4 chr6B.!!$F1 6259
2 TraesCS6D01G221400 chr6A 448658973 448665427 6454 True 3216.00 6682 95.15200 6 6345 3 chr6A.!!$R3 6339
3 TraesCS6D01G221400 chr2D 489640632 489642252 1620 True 449.00 449 72.58700 1603 3245 1 chr2D.!!$R2 1642
4 TraesCS6D01G221400 chr2B 573201374 573202990 1616 True 424.00 424 72.52900 1603 3245 1 chr2B.!!$R1 1642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 1126 1.224069 GCAGCAAGCTCGTCAACAGA 61.224 55.000 0.0 0.0 41.15 3.41 F
1252 1575 1.202177 CCGCATACACATTTGGTCAGC 60.202 52.381 0.0 0.0 0.00 4.26 F
1918 2278 1.565759 AGCCAACCATAGCTTCCATGA 59.434 47.619 0.0 0.0 35.22 3.07 F
2929 3336 2.715749 TCAGCATGGGGAGTAATGTG 57.284 50.000 0.0 0.0 36.16 3.21 F
3763 4170 0.953960 GGTGAAAGTACCAGCCCACG 60.954 60.000 0.0 0.0 40.54 4.94 F
4486 4921 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.0 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 2029 2.009681 TGCCACCAACTACAGAGAGA 57.990 50.000 0.00 0.0 0.00 3.10 R
2928 3335 4.830600 TGGAATCTCTATATGGTACGTGCA 59.169 41.667 5.86 0.0 0.00 4.57 R
3735 4142 2.371841 TGGTACTTTCACCAGCTGACAT 59.628 45.455 17.39 0.0 43.76 3.06 R
4473 4908 0.107654 GAATGTTGGGACGGAGGGAG 60.108 60.000 0.00 0.0 0.00 4.30 R
4621 5056 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
6384 6863 0.179215 CTTGATCGTTTCAGGCGCAC 60.179 55.000 10.83 0.0 35.27 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 201 1.548269 CACACTCCTGACCCTTCTCTC 59.452 57.143 0.00 0.00 0.00 3.20
361 375 4.736896 AACGTCGCTTCCTCGCCC 62.737 66.667 0.00 0.00 0.00 6.13
477 793 2.123033 GGGGAGGAGAGGAGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
537 859 1.380302 CCTGCTGGGGCTACTGTTT 59.620 57.895 0.71 0.00 39.59 2.83
670 992 2.142356 TTATCGGTGGTTCTCCGGTA 57.858 50.000 0.00 3.40 46.82 4.02
708 1030 3.009473 ACATGCTAACCACTGTCCTGAAT 59.991 43.478 0.00 0.00 0.00 2.57
719 1041 3.779183 ACTGTCCTGAATCCTGATGATGT 59.221 43.478 0.00 0.00 32.68 3.06
804 1126 1.224069 GCAGCAAGCTCGTCAACAGA 61.224 55.000 0.00 0.00 41.15 3.41
890 1212 7.440523 TTCTTGTCTGCTTCTTCTTTATTCC 57.559 36.000 0.00 0.00 0.00 3.01
999 1322 2.687566 AGGTAAGTGGGAGGGCGG 60.688 66.667 0.00 0.00 0.00 6.13
1026 1349 1.810532 GATTGGAGGCGACGAGTCT 59.189 57.895 0.00 0.00 37.62 3.24
1104 1427 3.941629 AGGAAGCCTGGATAGGATACAA 58.058 45.455 0.00 0.00 43.30 2.41
1146 1469 2.354259 CTGAGTGACAAGGAGATTGCC 58.646 52.381 0.00 0.00 43.15 4.52
1252 1575 1.202177 CCGCATACACATTTGGTCAGC 60.202 52.381 0.00 0.00 0.00 4.26
1344 1683 8.254508 TGTAGTACTGTTTTTGGAAGCATTTTT 58.745 29.630 5.39 0.00 0.00 1.94
1345 1684 7.538303 AGTACTGTTTTTGGAAGCATTTTTG 57.462 32.000 0.00 0.00 0.00 2.44
1375 1719 5.011090 TGATGTACTACAATGGCTCTCAC 57.989 43.478 0.00 0.00 0.00 3.51
1504 1862 4.572985 ATGTGCGCAATTGCTATGTAAT 57.427 36.364 26.86 10.81 39.32 1.89
1521 1879 7.275341 GCTATGTAATGATCTCACATGAGTAGC 59.725 40.741 8.70 7.47 42.60 3.58
1570 1930 4.752661 TGGTTACATTTTCCTAACGTGC 57.247 40.909 0.00 0.00 0.00 5.34
1669 2029 2.225041 GGAAGGGGTTAAGGAAGTTGCT 60.225 50.000 0.00 0.00 0.00 3.91
1740 2100 9.545105 AAGCATATGAGTCAAAAATTGTGAAAA 57.455 25.926 6.97 0.00 0.00 2.29
1918 2278 1.565759 AGCCAACCATAGCTTCCATGA 59.434 47.619 0.00 0.00 35.22 3.07
2113 2478 3.288809 AGGCGTTCTTTTTCAGCATTC 57.711 42.857 0.00 0.00 0.00 2.67
2151 2517 4.764308 TGTTATGCTCATGTTTGCTAACCA 59.236 37.500 8.56 0.00 33.15 3.67
2269 2635 2.823196 TGCGAAGGTTCAATATTGCG 57.177 45.000 10.76 8.34 0.00 4.85
2319 2685 9.476202 TCGATCTTATGGTTATTGTATGTTCTG 57.524 33.333 0.00 0.00 0.00 3.02
2507 2897 4.143347 GCATGTTTGCTCACCGTTTAATTG 60.143 41.667 0.00 0.00 45.77 2.32
2928 3335 3.959495 ATTCAGCATGGGGAGTAATGT 57.041 42.857 0.00 0.00 36.16 2.71
2929 3336 2.715749 TCAGCATGGGGAGTAATGTG 57.284 50.000 0.00 0.00 36.16 3.21
3384 3791 7.002276 TCCATTCATGATATTGCATGTCTTCT 58.998 34.615 0.00 0.00 44.59 2.85
3735 4142 4.921515 CGAGAGGAAATGAACGTTTGTCTA 59.078 41.667 0.46 0.00 0.00 2.59
3763 4170 0.953960 GGTGAAAGTACCAGCCCACG 60.954 60.000 0.00 0.00 40.54 4.94
3827 4234 3.439476 CAGCTTCAGTGAATTCAAGGAGG 59.561 47.826 10.35 11.80 0.00 4.30
4044 4451 4.302559 AGTTTGGTAATCTTCCCAGGAC 57.697 45.455 0.00 0.00 31.04 3.85
4374 4798 7.135467 GCTGCAGTTTATTTTCTAAGATAGGC 58.865 38.462 16.64 0.00 0.00 3.93
4377 4801 7.011109 TGCAGTTTATTTTCTAAGATAGGCGAC 59.989 37.037 0.00 0.00 0.00 5.19
4425 4856 5.914898 TCGTTTGATGACTCCTTGAGATA 57.085 39.130 0.00 0.00 33.32 1.98
4442 4873 6.798427 TGAGATATATCATTAGCAGGTCCC 57.202 41.667 15.08 0.00 0.00 4.46
4473 4908 4.939439 ACTACATCCGTCCCAAAATTGTAC 59.061 41.667 0.00 0.00 0.00 2.90
4474 4909 4.028993 ACATCCGTCCCAAAATTGTACT 57.971 40.909 0.00 0.00 0.00 2.73
4475 4910 4.007659 ACATCCGTCCCAAAATTGTACTC 58.992 43.478 0.00 0.00 0.00 2.59
4476 4911 3.062122 TCCGTCCCAAAATTGTACTCC 57.938 47.619 0.00 0.00 0.00 3.85
4477 4912 2.089201 CCGTCCCAAAATTGTACTCCC 58.911 52.381 0.00 0.00 0.00 4.30
4478 4913 2.290705 CCGTCCCAAAATTGTACTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
4479 4914 3.007635 CGTCCCAAAATTGTACTCCCTC 58.992 50.000 0.00 0.00 0.00 4.30
4480 4915 3.353557 GTCCCAAAATTGTACTCCCTCC 58.646 50.000 0.00 0.00 0.00 4.30
4481 4916 2.026636 TCCCAAAATTGTACTCCCTCCG 60.027 50.000 0.00 0.00 0.00 4.63
4482 4917 2.290705 CCCAAAATTGTACTCCCTCCGT 60.291 50.000 0.00 0.00 0.00 4.69
4483 4918 3.007635 CCAAAATTGTACTCCCTCCGTC 58.992 50.000 0.00 0.00 0.00 4.79
4484 4919 3.007635 CAAAATTGTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
4485 4920 1.201424 AATTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
4486 4921 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
4487 4922 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
4488 4923 0.901580 TGTACTCCCTCCGTCCCAAC 60.902 60.000 0.00 0.00 0.00 3.77
4489 4924 0.901580 GTACTCCCTCCGTCCCAACA 60.902 60.000 0.00 0.00 0.00 3.33
4490 4925 0.042131 TACTCCCTCCGTCCCAACAT 59.958 55.000 0.00 0.00 0.00 2.71
4491 4926 0.840722 ACTCCCTCCGTCCCAACATT 60.841 55.000 0.00 0.00 0.00 2.71
4492 4927 0.107654 CTCCCTCCGTCCCAACATTC 60.108 60.000 0.00 0.00 0.00 2.67
4493 4928 0.546747 TCCCTCCGTCCCAACATTCT 60.547 55.000 0.00 0.00 0.00 2.40
4494 4929 0.328258 CCCTCCGTCCCAACATTCTT 59.672 55.000 0.00 0.00 0.00 2.52
4495 4930 1.453155 CCTCCGTCCCAACATTCTTG 58.547 55.000 0.00 0.00 0.00 3.02
4496 4931 1.271379 CCTCCGTCCCAACATTCTTGT 60.271 52.381 0.00 0.00 37.82 3.16
4497 4932 2.076863 CTCCGTCCCAACATTCTTGTC 58.923 52.381 0.00 0.00 34.06 3.18
4498 4933 1.697432 TCCGTCCCAACATTCTTGTCT 59.303 47.619 0.00 0.00 34.06 3.41
4499 4934 2.105821 TCCGTCCCAACATTCTTGTCTT 59.894 45.455 0.00 0.00 34.06 3.01
4500 4935 3.325425 TCCGTCCCAACATTCTTGTCTTA 59.675 43.478 0.00 0.00 34.06 2.10
4501 4936 3.684788 CCGTCCCAACATTCTTGTCTTAG 59.315 47.826 0.00 0.00 34.06 2.18
4502 4937 4.562757 CCGTCCCAACATTCTTGTCTTAGA 60.563 45.833 0.00 0.00 34.06 2.10
4503 4938 5.178797 CGTCCCAACATTCTTGTCTTAGAT 58.821 41.667 0.00 0.00 34.06 1.98
4504 4939 5.643777 CGTCCCAACATTCTTGTCTTAGATT 59.356 40.000 0.00 0.00 34.06 2.40
4505 4940 6.149474 CGTCCCAACATTCTTGTCTTAGATTT 59.851 38.462 0.00 0.00 34.06 2.17
4506 4941 7.308435 GTCCCAACATTCTTGTCTTAGATTTG 58.692 38.462 0.00 0.00 34.06 2.32
4507 4942 7.004086 TCCCAACATTCTTGTCTTAGATTTGT 58.996 34.615 0.00 0.00 34.06 2.83
4508 4943 7.174946 TCCCAACATTCTTGTCTTAGATTTGTC 59.825 37.037 0.00 0.00 34.06 3.18
4509 4944 7.308435 CCAACATTCTTGTCTTAGATTTGTCC 58.692 38.462 0.00 0.00 34.06 4.02
4510 4945 7.040478 CCAACATTCTTGTCTTAGATTTGTCCA 60.040 37.037 0.00 0.00 34.06 4.02
4511 4946 8.352201 CAACATTCTTGTCTTAGATTTGTCCAA 58.648 33.333 0.00 0.00 34.06 3.53
4512 4947 8.463930 ACATTCTTGTCTTAGATTTGTCCAAA 57.536 30.769 0.00 0.00 34.46 3.28
4513 4948 9.082313 ACATTCTTGTCTTAGATTTGTCCAAAT 57.918 29.630 4.98 4.98 43.14 2.32
4516 4951 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
4517 4952 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
4518 4953 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
4519 4954 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
4520 4955 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
4521 4956 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
4522 4957 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
4523 4958 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
4524 4959 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
4525 4960 7.279615 AGATTTGTCCAAATACGGATGTATCA 58.720 34.615 5.29 0.00 40.42 2.15
4526 4961 7.773224 AGATTTGTCCAAATACGGATGTATCAA 59.227 33.333 5.29 0.00 40.42 2.57
4527 4962 6.918892 TTGTCCAAATACGGATGTATCAAG 57.081 37.500 0.00 0.00 40.42 3.02
4528 4963 5.984725 TGTCCAAATACGGATGTATCAAGT 58.015 37.500 0.00 0.00 40.42 3.16
4529 4964 6.046593 TGTCCAAATACGGATGTATCAAGTC 58.953 40.000 0.00 0.00 40.42 3.01
4530 4965 6.046593 GTCCAAATACGGATGTATCAAGTCA 58.953 40.000 0.00 0.00 40.42 3.41
4531 4966 6.018994 GTCCAAATACGGATGTATCAAGTCAC 60.019 42.308 0.00 0.00 40.42 3.67
4532 4967 5.051039 CCAAATACGGATGTATCAAGTCACG 60.051 44.000 0.00 0.00 40.42 4.35
4533 4968 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
4534 4969 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
4535 4970 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
4536 4971 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
4537 4972 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
4538 4973 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
4539 4974 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
4540 4975 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
4541 4976 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
4542 4977 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4552 4987 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
4553 4988 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
4554 4989 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
4555 4990 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
4573 5008 9.439500 ACATCCGTATCTAGACTAATCTAAGAC 57.561 37.037 0.00 0.00 36.98 3.01
4574 5009 9.438228 CATCCGTATCTAGACTAATCTAAGACA 57.562 37.037 0.00 0.00 36.98 3.41
4576 5011 9.491675 TCCGTATCTAGACTAATCTAAGACAAG 57.508 37.037 0.00 0.00 36.98 3.16
4577 5012 9.491675 CCGTATCTAGACTAATCTAAGACAAGA 57.508 37.037 0.00 0.00 36.98 3.02
4585 5020 9.454859 AGACTAATCTAAGACAAGAATTTTGGG 57.545 33.333 5.68 0.00 31.46 4.12
4586 5021 9.449719 GACTAATCTAAGACAAGAATTTTGGGA 57.550 33.333 5.68 0.00 0.00 4.37
4587 5022 9.981460 ACTAATCTAAGACAAGAATTTTGGGAT 57.019 29.630 5.68 0.00 0.00 3.85
4590 5025 9.753674 AATCTAAGACAAGAATTTTGGGATACA 57.246 29.630 5.68 0.00 39.74 2.29
4591 5026 9.927081 ATCTAAGACAAGAATTTTGGGATACAT 57.073 29.630 5.68 0.00 39.74 2.29
4592 5027 9.396022 TCTAAGACAAGAATTTTGGGATACATC 57.604 33.333 5.68 0.00 39.74 3.06
4593 5028 7.410120 AAGACAAGAATTTTGGGATACATCC 57.590 36.000 0.00 0.00 46.41 3.51
4607 5042 6.877611 GGATACATCCGTATTTGGACAAAT 57.122 37.500 14.02 14.02 41.85 2.32
4608 5043 6.899114 GGATACATCCGTATTTGGACAAATC 58.101 40.000 13.07 5.63 41.85 2.17
4609 5044 6.710744 GGATACATCCGTATTTGGACAAATCT 59.289 38.462 13.07 0.00 41.85 2.40
4610 5045 7.876068 GGATACATCCGTATTTGGACAAATCTA 59.124 37.037 13.07 0.00 41.85 1.98
4611 5046 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
4612 5047 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
4613 5048 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
4614 5049 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
4615 5050 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
4616 5051 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
4617 5052 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
4618 5053 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
4619 5054 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
4624 5059 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
4625 5060 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
4626 5061 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
4627 5062 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4628 5063 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4629 5064 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4630 5065 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
4631 5066 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4632 5067 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4633 5068 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4634 5069 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4635 5070 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4636 5071 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4637 5072 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4638 5073 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4639 5074 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4651 5086 3.574826 GGAGGGAGTACTAAATCAGCGAT 59.425 47.826 0.00 0.00 0.00 4.58
4669 5104 3.493503 GCGATACTTATTTTGGGACGGAG 59.506 47.826 0.00 0.00 0.00 4.63
4701 5136 4.858692 TCTGCTGAAATGCTTTATTTTCGC 59.141 37.500 0.00 0.00 39.06 4.70
4809 5244 2.494870 GGATGCTTTGCAATCACCTTCT 59.505 45.455 0.00 0.00 43.62 2.85
4851 5286 4.768583 AGAAGAAACAGCAGGAGATCATC 58.231 43.478 0.00 0.00 0.00 2.92
4953 5388 3.310774 CGATTTACATGGAAGTGGAGCTG 59.689 47.826 0.00 0.00 0.00 4.24
5090 5525 8.034215 TGCACCAATTATCTGTATTCCTTTTTG 58.966 33.333 0.00 0.00 0.00 2.44
5178 5613 0.677731 TATGCAGCGCCAAGAAGCTT 60.678 50.000 2.29 0.00 42.52 3.74
5282 5717 0.389166 GTGTCGCTGGACTCCAAGAG 60.389 60.000 0.00 0.00 43.79 2.85
5487 5922 0.602060 GATACGGGATCCCCTCGTTC 59.398 60.000 25.73 14.40 42.67 3.95
5500 5935 1.328680 CCTCGTTCGGCTGATTGATTG 59.671 52.381 0.00 0.00 0.00 2.67
5514 5982 2.346766 TGATTGATGATTGGGGGTCG 57.653 50.000 0.00 0.00 0.00 4.79
5515 5983 1.133823 TGATTGATGATTGGGGGTCGG 60.134 52.381 0.00 0.00 0.00 4.79
5534 6002 2.038837 TGACGACACGAGGCGAGAT 61.039 57.895 16.96 0.00 0.00 2.75
5671 6145 1.901833 GGGGTTTGATCTTGGTGCATT 59.098 47.619 0.00 0.00 0.00 3.56
5776 6250 2.202557 CGTATCCAGACGCACGCA 60.203 61.111 0.00 0.00 35.79 5.24
5808 6285 0.678366 TGTTGTTGCAGTTCCCACGT 60.678 50.000 0.00 0.00 0.00 4.49
5870 6347 6.653320 TGTGTATCGAAGGCTTGTAGAAAATT 59.347 34.615 3.46 0.00 0.00 1.82
5871 6348 7.148474 TGTGTATCGAAGGCTTGTAGAAAATTC 60.148 37.037 3.46 0.00 0.00 2.17
5884 6361 5.747675 TGTAGAAAATTCAACACGTGTCGTA 59.252 36.000 23.61 4.72 38.32 3.43
5901 6378 1.153147 TACGTTGCAGCCACCACAA 60.153 52.632 0.00 0.00 0.00 3.33
5942 6419 1.401931 GCGTGCTGTTTGATCTGCAAT 60.402 47.619 0.00 0.00 42.11 3.56
6025 6502 7.681939 TCAAGTGTACTGTTTTCTGTTCTTT 57.318 32.000 0.00 0.00 34.05 2.52
6030 6507 8.021396 AGTGTACTGTTTTCTGTTCTTTTCAAC 58.979 33.333 0.00 0.00 34.05 3.18
6324 6803 4.990553 GCGCTCCTAATCCGGGCC 62.991 72.222 0.00 0.00 0.00 5.80
6331 6810 4.555709 TAATCCGGGCCGCGCATT 62.556 61.111 23.20 19.18 0.00 3.56
6366 6845 6.984474 TGAAGATCAGTTTGGTTCGATATACC 59.016 38.462 0.00 0.00 36.17 2.73
6367 6846 6.732896 AGATCAGTTTGGTTCGATATACCT 57.267 37.500 6.34 0.00 36.60 3.08
6368 6847 6.516718 AGATCAGTTTGGTTCGATATACCTG 58.483 40.000 6.34 0.24 36.60 4.00
6369 6848 5.018539 TCAGTTTGGTTCGATATACCTGG 57.981 43.478 6.34 0.00 36.60 4.45
6371 6850 2.876550 GTTTGGTTCGATATACCTGGCC 59.123 50.000 6.34 0.00 36.60 5.36
6372 6851 2.097110 TGGTTCGATATACCTGGCCT 57.903 50.000 3.32 0.00 36.60 5.19
6374 6853 2.367567 TGGTTCGATATACCTGGCCTTC 59.632 50.000 3.32 0.00 36.60 3.46
6375 6854 2.633481 GGTTCGATATACCTGGCCTTCT 59.367 50.000 3.32 0.00 32.75 2.85
6376 6855 3.071167 GGTTCGATATACCTGGCCTTCTT 59.929 47.826 3.32 0.00 32.75 2.52
6377 6856 4.058817 GTTCGATATACCTGGCCTTCTTG 58.941 47.826 3.32 0.00 0.00 3.02
6378 6857 2.037251 TCGATATACCTGGCCTTCTTGC 59.963 50.000 3.32 0.00 0.00 4.01
6399 6878 3.788766 GCGTGCGCCTGAAACGAT 61.789 61.111 19.72 0.00 39.64 3.73
6400 6879 2.395690 CGTGCGCCTGAAACGATC 59.604 61.111 11.33 0.00 39.64 3.69
6401 6880 2.379634 CGTGCGCCTGAAACGATCA 61.380 57.895 11.33 0.00 39.64 2.92
6402 6881 1.866237 GTGCGCCTGAAACGATCAA 59.134 52.632 4.18 0.00 37.67 2.57
6403 6882 0.179215 GTGCGCCTGAAACGATCAAG 60.179 55.000 4.18 0.00 37.67 3.02
6404 6883 1.298157 TGCGCCTGAAACGATCAAGG 61.298 55.000 4.18 0.00 37.67 3.61
6405 6884 1.019278 GCGCCTGAAACGATCAAGGA 61.019 55.000 0.00 0.00 37.67 3.36
6406 6885 1.438651 CGCCTGAAACGATCAAGGAA 58.561 50.000 0.00 0.00 37.67 3.36
6407 6886 2.009774 CGCCTGAAACGATCAAGGAAT 58.990 47.619 0.00 0.00 37.67 3.01
6408 6887 2.030946 CGCCTGAAACGATCAAGGAATC 59.969 50.000 0.00 0.00 37.67 2.52
6409 6888 3.009723 GCCTGAAACGATCAAGGAATCA 58.990 45.455 0.00 0.00 37.67 2.57
6410 6889 3.629398 GCCTGAAACGATCAAGGAATCAT 59.371 43.478 0.00 0.00 37.67 2.45
6411 6890 4.497006 GCCTGAAACGATCAAGGAATCATG 60.497 45.833 0.00 0.00 37.67 3.07
6412 6891 4.497006 CCTGAAACGATCAAGGAATCATGC 60.497 45.833 0.00 0.00 37.67 4.06
6413 6892 3.378112 TGAAACGATCAAGGAATCATGCC 59.622 43.478 0.00 0.00 34.30 4.40
6414 6893 3.287867 AACGATCAAGGAATCATGCCT 57.712 42.857 0.00 0.00 37.35 4.75
6415 6894 2.569059 ACGATCAAGGAATCATGCCTG 58.431 47.619 0.00 0.00 35.50 4.85
6416 6895 1.878088 CGATCAAGGAATCATGCCTGG 59.122 52.381 0.00 0.00 35.50 4.45
6417 6896 2.747467 CGATCAAGGAATCATGCCTGGT 60.747 50.000 0.00 0.00 35.50 4.00
6418 6897 2.133281 TCAAGGAATCATGCCTGGTG 57.867 50.000 0.00 0.00 35.50 4.17
6419 6898 1.634973 TCAAGGAATCATGCCTGGTGA 59.365 47.619 0.00 0.00 35.50 4.02
6420 6899 2.022195 CAAGGAATCATGCCTGGTGAG 58.978 52.381 0.00 0.00 35.50 3.51
6421 6900 0.549950 AGGAATCATGCCTGGTGAGG 59.450 55.000 0.00 0.00 43.19 3.86
6436 6915 2.689034 AGGCTAGCCTGGGGTGAC 60.689 66.667 35.59 4.45 46.22 3.67
6437 6916 2.689034 GGCTAGCCTGGGGTGACT 60.689 66.667 27.17 0.00 0.00 3.41
6438 6917 2.301738 GGCTAGCCTGGGGTGACTT 61.302 63.158 27.17 0.00 0.00 3.01
6439 6918 1.685820 GCTAGCCTGGGGTGACTTT 59.314 57.895 2.29 0.00 0.00 2.66
6440 6919 0.678048 GCTAGCCTGGGGTGACTTTG 60.678 60.000 2.29 0.00 0.00 2.77
6441 6920 0.693049 CTAGCCTGGGGTGACTTTGT 59.307 55.000 1.17 0.00 0.00 2.83
6442 6921 1.073923 CTAGCCTGGGGTGACTTTGTT 59.926 52.381 1.17 0.00 0.00 2.83
6443 6922 0.261696 AGCCTGGGGTGACTTTGTTT 59.738 50.000 0.00 0.00 0.00 2.83
6444 6923 1.119684 GCCTGGGGTGACTTTGTTTT 58.880 50.000 0.00 0.00 0.00 2.43
6445 6924 1.202521 GCCTGGGGTGACTTTGTTTTG 60.203 52.381 0.00 0.00 0.00 2.44
6446 6925 2.107366 CCTGGGGTGACTTTGTTTTGT 58.893 47.619 0.00 0.00 0.00 2.83
6447 6926 3.292460 CCTGGGGTGACTTTGTTTTGTA 58.708 45.455 0.00 0.00 0.00 2.41
6448 6927 3.895041 CCTGGGGTGACTTTGTTTTGTAT 59.105 43.478 0.00 0.00 0.00 2.29
6449 6928 4.261994 CCTGGGGTGACTTTGTTTTGTATG 60.262 45.833 0.00 0.00 0.00 2.39
6450 6929 3.068873 TGGGGTGACTTTGTTTTGTATGC 59.931 43.478 0.00 0.00 0.00 3.14
6451 6930 3.305110 GGGTGACTTTGTTTTGTATGCG 58.695 45.455 0.00 0.00 0.00 4.73
6452 6931 3.243267 GGGTGACTTTGTTTTGTATGCGT 60.243 43.478 0.00 0.00 0.00 5.24
6453 6932 4.356289 GGTGACTTTGTTTTGTATGCGTT 58.644 39.130 0.00 0.00 0.00 4.84
6454 6933 4.439776 GGTGACTTTGTTTTGTATGCGTTC 59.560 41.667 0.00 0.00 0.00 3.95
6455 6934 5.270853 GTGACTTTGTTTTGTATGCGTTCT 58.729 37.500 0.00 0.00 0.00 3.01
6456 6935 5.171337 GTGACTTTGTTTTGTATGCGTTCTG 59.829 40.000 0.00 0.00 0.00 3.02
6457 6936 4.606961 ACTTTGTTTTGTATGCGTTCTGG 58.393 39.130 0.00 0.00 0.00 3.86
6458 6937 2.697431 TGTTTTGTATGCGTTCTGGC 57.303 45.000 0.00 0.00 0.00 4.85
6459 6938 2.226330 TGTTTTGTATGCGTTCTGGCT 58.774 42.857 0.00 0.00 0.00 4.75
6460 6939 2.621055 TGTTTTGTATGCGTTCTGGCTT 59.379 40.909 0.00 0.00 0.00 4.35
6461 6940 2.979813 GTTTTGTATGCGTTCTGGCTTG 59.020 45.455 0.00 0.00 0.00 4.01
6462 6941 1.164411 TTGTATGCGTTCTGGCTTGG 58.836 50.000 0.00 0.00 0.00 3.61
6463 6942 1.305219 TGTATGCGTTCTGGCTTGGC 61.305 55.000 0.00 0.00 0.00 4.52
6464 6943 1.026718 GTATGCGTTCTGGCTTGGCT 61.027 55.000 0.00 0.00 0.00 4.75
6465 6944 0.322456 TATGCGTTCTGGCTTGGCTT 60.322 50.000 0.00 0.00 0.00 4.35
6466 6945 1.870055 ATGCGTTCTGGCTTGGCTTG 61.870 55.000 0.00 0.00 0.00 4.01
6467 6946 2.256461 CGTTCTGGCTTGGCTTGC 59.744 61.111 0.00 0.00 0.00 4.01
6468 6947 2.263741 CGTTCTGGCTTGGCTTGCT 61.264 57.895 2.77 0.00 0.00 3.91
6469 6948 0.955428 CGTTCTGGCTTGGCTTGCTA 60.955 55.000 2.77 0.00 0.00 3.49
6470 6949 1.467920 GTTCTGGCTTGGCTTGCTAT 58.532 50.000 2.77 0.00 0.00 2.97
6471 6950 1.821136 GTTCTGGCTTGGCTTGCTATT 59.179 47.619 2.77 0.00 0.00 1.73
6472 6951 3.016736 GTTCTGGCTTGGCTTGCTATTA 58.983 45.455 2.77 0.00 0.00 0.98
6473 6952 3.582998 TCTGGCTTGGCTTGCTATTAT 57.417 42.857 2.77 0.00 0.00 1.28
6474 6953 4.705110 TCTGGCTTGGCTTGCTATTATA 57.295 40.909 2.77 0.00 0.00 0.98
6475 6954 5.047566 TCTGGCTTGGCTTGCTATTATAA 57.952 39.130 0.00 0.00 0.00 0.98
6476 6955 5.065914 TCTGGCTTGGCTTGCTATTATAAG 58.934 41.667 0.00 0.00 0.00 1.73
6477 6956 3.569701 TGGCTTGGCTTGCTATTATAAGC 59.430 43.478 0.00 0.00 46.45 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.777580 CAGGCCCTTTATGTTCTATATTGGTT 59.222 38.462 0.00 0.00 0.00 3.67
1 2 6.306987 CAGGCCCTTTATGTTCTATATTGGT 58.693 40.000 0.00 0.00 0.00 3.67
2 3 5.183904 GCAGGCCCTTTATGTTCTATATTGG 59.816 44.000 0.00 0.00 0.00 3.16
3 4 5.106555 CGCAGGCCCTTTATGTTCTATATTG 60.107 44.000 0.00 0.00 0.00 1.90
4 5 5.003804 CGCAGGCCCTTTATGTTCTATATT 58.996 41.667 0.00 0.00 0.00 1.28
10 11 1.433471 GCGCAGGCCCTTTATGTTC 59.567 57.895 0.30 0.00 0.00 3.18
81 87 1.466167 CGTTGCTTGGATTCCTCTGTG 59.534 52.381 3.95 0.00 0.00 3.66
537 859 1.053424 AAGCACTCCCTAACAACCGA 58.947 50.000 0.00 0.00 0.00 4.69
708 1030 5.049828 CAGTAATTACGCACATCATCAGGA 58.950 41.667 9.91 0.00 0.00 3.86
719 1041 3.527533 CTTGGCTACCAGTAATTACGCA 58.472 45.455 9.91 0.00 33.81 5.24
804 1126 1.228552 ATTTGAGTGCCGGGCAAGT 60.229 52.632 25.70 14.54 41.47 3.16
890 1212 4.150627 GCAAGGCACATATGATACGTACAG 59.849 45.833 10.38 0.00 0.00 2.74
999 1322 2.113986 CCTCCAATCGCCCCCATC 59.886 66.667 0.00 0.00 0.00 3.51
1026 1349 0.764271 TCATCTTGTCCCACTGCACA 59.236 50.000 0.00 0.00 0.00 4.57
1104 1427 0.977395 GCCTCACCCTCACTAACACT 59.023 55.000 0.00 0.00 0.00 3.55
1252 1575 4.871993 AAGATGTAGCATCAAAAGAGCG 57.128 40.909 11.12 0.00 0.00 5.03
1344 1683 6.403049 CCATTGTAGTACATCAGGTGTTACA 58.597 40.000 3.28 0.00 42.29 2.41
1345 1684 5.293569 GCCATTGTAGTACATCAGGTGTTAC 59.706 44.000 3.28 0.00 42.29 2.50
1375 1719 7.062605 GGAAATATGATGTTTGAGTGTTGCTTG 59.937 37.037 0.00 0.00 0.00 4.01
1504 1862 2.359214 GACCGCTACTCATGTGAGATCA 59.641 50.000 16.41 1.25 44.74 2.92
1521 1879 8.411683 ACTATAAGTCTTACCAACTAATGACCG 58.588 37.037 0.00 0.00 0.00 4.79
1595 1955 5.290493 TGAAATACCCTGTCTGCGAATAT 57.710 39.130 0.00 0.00 0.00 1.28
1600 1960 2.614057 GGAATGAAATACCCTGTCTGCG 59.386 50.000 0.00 0.00 0.00 5.18
1669 2029 2.009681 TGCCACCAACTACAGAGAGA 57.990 50.000 0.00 0.00 0.00 3.10
2113 2478 6.531594 TGAGCATAACATCACTCGAAGTTAAG 59.468 38.462 0.00 0.00 38.43 1.85
2269 2635 6.555315 ACAAAATGCAAGCTGCTATTAGTAC 58.445 36.000 0.90 0.00 45.31 2.73
2319 2685 9.210426 CTATTACAATCACGTAAAGCACAAATC 57.790 33.333 0.00 0.00 35.12 2.17
2495 2885 6.489127 TTGGTAGATGACAATTAAACGGTG 57.511 37.500 0.00 0.00 0.00 4.94
2507 2897 6.166279 TCAACAGTCTGAATTGGTAGATGAC 58.834 40.000 6.91 0.00 0.00 3.06
2928 3335 4.830600 TGGAATCTCTATATGGTACGTGCA 59.169 41.667 5.86 0.00 0.00 4.57
2929 3336 5.386958 TGGAATCTCTATATGGTACGTGC 57.613 43.478 0.00 0.00 0.00 5.34
3384 3791 8.299570 GTTCTTTTATTTCTTTCTCCATCTGCA 58.700 33.333 0.00 0.00 0.00 4.41
3735 4142 2.371841 TGGTACTTTCACCAGCTGACAT 59.628 45.455 17.39 0.00 43.76 3.06
3763 4170 7.583230 CATGCTAGAATTCCTATTTGAAGCTC 58.417 38.462 0.65 0.00 30.58 4.09
3827 4234 4.844884 AGGTAATAGGAGTTTCACCAAGC 58.155 43.478 0.00 0.00 0.00 4.01
4044 4451 2.712709 TCTCTGGTACTCTTCAGGTCG 58.287 52.381 0.00 0.00 0.00 4.79
4404 4828 8.084684 TGATATATCTCAAGGAGTCATCAAACG 58.915 37.037 13.79 0.00 0.00 3.60
4425 4856 9.148879 GTATGTATAGGGACCTGCTAATGATAT 57.851 37.037 0.00 0.00 0.00 1.63
4442 4873 6.829229 TTGGGACGGATGTAGTATGTATAG 57.171 41.667 0.00 0.00 0.00 1.31
4473 4908 0.107654 GAATGTTGGGACGGAGGGAG 60.108 60.000 0.00 0.00 0.00 4.30
4474 4909 0.546747 AGAATGTTGGGACGGAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
4475 4910 0.328258 AAGAATGTTGGGACGGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
4476 4911 1.271379 ACAAGAATGTTGGGACGGAGG 60.271 52.381 0.00 0.00 35.91 4.30
4477 4912 2.076863 GACAAGAATGTTGGGACGGAG 58.923 52.381 0.00 0.00 40.74 4.63
4478 4913 1.697432 AGACAAGAATGTTGGGACGGA 59.303 47.619 0.00 0.00 40.74 4.69
4479 4914 2.185004 AGACAAGAATGTTGGGACGG 57.815 50.000 0.00 0.00 40.74 4.79
4480 4915 4.566004 TCTAAGACAAGAATGTTGGGACG 58.434 43.478 0.00 0.00 40.74 4.79
4481 4916 7.040409 ACAAATCTAAGACAAGAATGTTGGGAC 60.040 37.037 0.00 0.00 40.74 4.46
4482 4917 7.004086 ACAAATCTAAGACAAGAATGTTGGGA 58.996 34.615 0.00 0.00 40.74 4.37
4483 4918 7.219484 ACAAATCTAAGACAAGAATGTTGGG 57.781 36.000 0.00 0.00 40.74 4.12
4484 4919 7.040478 TGGACAAATCTAAGACAAGAATGTTGG 60.040 37.037 0.00 0.00 40.74 3.77
4485 4920 7.874940 TGGACAAATCTAAGACAAGAATGTTG 58.125 34.615 0.00 0.00 40.74 3.33
4486 4921 8.463930 TTGGACAAATCTAAGACAAGAATGTT 57.536 30.769 0.00 0.00 40.74 2.71
4487 4922 8.463930 TTTGGACAAATCTAAGACAAGAATGT 57.536 30.769 0.00 0.00 44.25 2.71
4490 4925 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
4491 4926 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
4492 4927 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
4493 4928 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
4494 4929 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
4495 4930 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
4496 4931 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
4497 4932 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
4498 4933 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
4499 4934 8.425703 TGATACATCCGTATTTGGACAAATCTA 58.574 33.333 13.07 0.00 41.85 1.98
4500 4935 7.279615 TGATACATCCGTATTTGGACAAATCT 58.720 34.615 13.07 0.00 41.85 2.40
4501 4936 7.490962 TGATACATCCGTATTTGGACAAATC 57.509 36.000 13.07 5.63 41.85 2.17
4502 4937 7.556275 ACTTGATACATCCGTATTTGGACAAAT 59.444 33.333 14.02 14.02 41.85 2.32
4503 4938 6.882140 ACTTGATACATCCGTATTTGGACAAA 59.118 34.615 0.00 0.00 41.85 2.83
4504 4939 6.411376 ACTTGATACATCCGTATTTGGACAA 58.589 36.000 0.00 0.00 41.85 3.18
4505 4940 5.984725 ACTTGATACATCCGTATTTGGACA 58.015 37.500 0.00 0.00 41.85 4.02
4506 4941 6.018994 GTGACTTGATACATCCGTATTTGGAC 60.019 42.308 0.00 0.00 41.85 4.02
4507 4942 6.046593 GTGACTTGATACATCCGTATTTGGA 58.953 40.000 0.00 0.00 43.58 3.53
4508 4943 5.051039 CGTGACTTGATACATCCGTATTTGG 60.051 44.000 0.00 0.00 38.48 3.28
4509 4944 5.518847 ACGTGACTTGATACATCCGTATTTG 59.481 40.000 0.00 0.00 38.48 2.32
4510 4945 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
4511 4946 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
4512 4947 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
4513 4948 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
4514 4949 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
4515 4950 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
4516 4951 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4526 4961 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
4527 4962 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
4528 4963 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
4529 4964 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
4547 4982 9.439500 GTCTTAGATTAGTCTAGATACGGATGT 57.561 37.037 0.00 0.00 38.17 3.06
4548 4983 9.438228 TGTCTTAGATTAGTCTAGATACGGATG 57.562 37.037 0.00 0.00 38.17 3.51
4550 4985 9.491675 CTTGTCTTAGATTAGTCTAGATACGGA 57.508 37.037 0.00 0.00 38.17 4.69
4551 4986 9.491675 TCTTGTCTTAGATTAGTCTAGATACGG 57.508 37.037 0.00 0.00 38.17 4.02
4559 4994 9.454859 CCCAAAATTCTTGTCTTAGATTAGTCT 57.545 33.333 0.00 0.00 38.52 3.24
4560 4995 9.449719 TCCCAAAATTCTTGTCTTAGATTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
4561 4996 9.981460 ATCCCAAAATTCTTGTCTTAGATTAGT 57.019 29.630 0.00 0.00 0.00 2.24
4564 4999 9.753674 TGTATCCCAAAATTCTTGTCTTAGATT 57.246 29.630 0.00 0.00 0.00 2.40
4565 5000 9.927081 ATGTATCCCAAAATTCTTGTCTTAGAT 57.073 29.630 0.00 0.00 0.00 1.98
4566 5001 9.396022 GATGTATCCCAAAATTCTTGTCTTAGA 57.604 33.333 0.00 0.00 0.00 2.10
4567 5002 8.624776 GGATGTATCCCAAAATTCTTGTCTTAG 58.375 37.037 0.00 0.00 41.20 2.18
4568 5003 7.282224 CGGATGTATCCCAAAATTCTTGTCTTA 59.718 37.037 5.36 0.00 44.24 2.10
4569 5004 6.095440 CGGATGTATCCCAAAATTCTTGTCTT 59.905 38.462 5.36 0.00 44.24 3.01
4570 5005 5.590259 CGGATGTATCCCAAAATTCTTGTCT 59.410 40.000 5.36 0.00 44.24 3.41
4571 5006 5.357032 ACGGATGTATCCCAAAATTCTTGTC 59.643 40.000 5.36 0.00 44.24 3.18
4572 5007 5.261216 ACGGATGTATCCCAAAATTCTTGT 58.739 37.500 5.36 0.00 44.24 3.16
4573 5008 5.835113 ACGGATGTATCCCAAAATTCTTG 57.165 39.130 5.36 0.00 44.24 3.02
4574 5009 8.413229 CAAATACGGATGTATCCCAAAATTCTT 58.587 33.333 5.36 0.00 44.24 2.52
4575 5010 7.014230 CCAAATACGGATGTATCCCAAAATTCT 59.986 37.037 5.36 0.00 44.24 2.40
4576 5011 7.013846 TCCAAATACGGATGTATCCCAAAATTC 59.986 37.037 5.36 0.00 44.24 2.17
4577 5012 6.836527 TCCAAATACGGATGTATCCCAAAATT 59.163 34.615 5.36 0.00 44.24 1.82
4578 5013 6.264518 GTCCAAATACGGATGTATCCCAAAAT 59.735 38.462 5.36 0.00 44.24 1.82
4579 5014 5.591067 GTCCAAATACGGATGTATCCCAAAA 59.409 40.000 5.36 0.00 44.24 2.44
4580 5015 5.127491 GTCCAAATACGGATGTATCCCAAA 58.873 41.667 5.36 0.00 44.24 3.28
4581 5016 4.164413 TGTCCAAATACGGATGTATCCCAA 59.836 41.667 5.36 0.00 44.24 4.12
4582 5017 3.712218 TGTCCAAATACGGATGTATCCCA 59.288 43.478 5.36 0.00 44.24 4.37
4583 5018 4.345859 TGTCCAAATACGGATGTATCCC 57.654 45.455 5.36 0.00 44.24 3.85
4584 5019 6.710744 AGATTTGTCCAAATACGGATGTATCC 59.289 38.462 5.29 0.63 40.42 2.59
4585 5020 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
4586 5021 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
4587 5022 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
4588 5023 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
4589 5024 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
4590 5025 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
4591 5026 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
4592 5027 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
4593 5028 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
4598 5033 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
4599 5034 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
4600 5035 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
4601 5036 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4602 5037 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4603 5038 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4604 5039 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4605 5040 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4606 5041 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4607 5042 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4608 5043 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4609 5044 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4610 5045 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4611 5046 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4612 5047 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4613 5048 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4614 5049 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4615 5050 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4616 5051 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4617 5052 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4618 5053 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4619 5054 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4620 5055 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4621 5056 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4622 5057 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4623 5058 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4624 5059 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
4625 5060 3.294214 TGATTTAGTACTCCCTCCGTCC 58.706 50.000 0.00 0.00 0.00 4.79
4626 5061 3.243468 GCTGATTTAGTACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
4627 5062 2.694109 GCTGATTTAGTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
4628 5063 2.287668 CGCTGATTTAGTACTCCCTCCG 60.288 54.545 0.00 0.00 0.00 4.63
4629 5064 2.957006 TCGCTGATTTAGTACTCCCTCC 59.043 50.000 0.00 0.00 0.00 4.30
4630 5065 4.857509 ATCGCTGATTTAGTACTCCCTC 57.142 45.455 0.00 0.00 0.00 4.30
4631 5066 5.386924 AGTATCGCTGATTTAGTACTCCCT 58.613 41.667 0.00 0.00 0.00 4.20
4632 5067 5.708877 AGTATCGCTGATTTAGTACTCCC 57.291 43.478 0.00 0.00 0.00 4.30
4633 5068 9.694137 AAATAAGTATCGCTGATTTAGTACTCC 57.306 33.333 0.00 0.00 36.68 3.85
4637 5072 9.268268 CCCAAAATAAGTATCGCTGATTTAGTA 57.732 33.333 0.00 0.00 37.29 1.82
4638 5073 7.990886 TCCCAAAATAAGTATCGCTGATTTAGT 59.009 33.333 0.00 0.00 37.29 2.24
4639 5074 8.283291 GTCCCAAAATAAGTATCGCTGATTTAG 58.717 37.037 0.00 0.00 37.29 1.85
4651 5086 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
4669 5104 3.137533 GCATTTCAGCAGATCTACTCCC 58.862 50.000 0.00 0.00 0.00 4.30
4742 5177 4.349636 TCTTTCCATTCCCACTCTACAACA 59.650 41.667 0.00 0.00 0.00 3.33
4793 5228 3.181503 CCATCGAGAAGGTGATTGCAAAG 60.182 47.826 1.71 0.00 30.86 2.77
4809 5244 1.134250 TCGAATTCCAATGGCCATCGA 60.134 47.619 21.08 19.68 0.00 3.59
4866 5301 0.387239 GGACCAACGAAATGCTGCAC 60.387 55.000 3.57 0.00 0.00 4.57
4953 5388 2.048127 AGGAACGACAGCCTTCGC 60.048 61.111 4.53 0.00 43.06 4.70
5097 5532 8.383175 CCTTTCTCTCATCTATCTAGTCTAGGT 58.617 40.741 7.05 2.23 0.00 3.08
5099 5534 9.436957 GTCCTTTCTCTCATCTATCTAGTCTAG 57.563 40.741 0.00 0.00 0.00 2.43
5100 5535 8.092068 CGTCCTTTCTCTCATCTATCTAGTCTA 58.908 40.741 0.00 0.00 0.00 2.59
5101 5536 6.934645 CGTCCTTTCTCTCATCTATCTAGTCT 59.065 42.308 0.00 0.00 0.00 3.24
5102 5537 6.932400 TCGTCCTTTCTCTCATCTATCTAGTC 59.068 42.308 0.00 0.00 0.00 2.59
5103 5538 6.833041 TCGTCCTTTCTCTCATCTATCTAGT 58.167 40.000 0.00 0.00 0.00 2.57
5104 5539 7.227711 TGTTCGTCCTTTCTCTCATCTATCTAG 59.772 40.741 0.00 0.00 0.00 2.43
5178 5613 2.124109 ATCTCCCTCTCGCGCTGA 60.124 61.111 5.56 3.55 0.00 4.26
5282 5717 2.045536 CCACCTGCAGCTTCCTCC 60.046 66.667 8.66 0.00 0.00 4.30
5487 5922 3.305131 CCCAATCATCAATCAATCAGCCG 60.305 47.826 0.00 0.00 0.00 5.52
5500 5935 0.463833 GTCACCGACCCCCAATCATC 60.464 60.000 0.00 0.00 0.00 2.92
5514 5982 3.948086 CTCGCCTCGTGTCGTCACC 62.948 68.421 7.21 0.00 41.09 4.02
5515 5983 2.254703 ATCTCGCCTCGTGTCGTCAC 62.255 60.000 2.47 2.47 40.79 3.67
5530 5998 2.085320 GCATCATCCTGCCATCATCTC 58.915 52.381 0.00 0.00 36.10 2.75
5534 6002 1.228033 CCGCATCATCCTGCCATCA 60.228 57.895 0.00 0.00 39.00 3.07
5572 6040 7.060421 AGATACAAAACCACCAGAGAGAAAAA 58.940 34.615 0.00 0.00 0.00 1.94
5573 6041 6.601332 AGATACAAAACCACCAGAGAGAAAA 58.399 36.000 0.00 0.00 0.00 2.29
5574 6042 6.187727 AGATACAAAACCACCAGAGAGAAA 57.812 37.500 0.00 0.00 0.00 2.52
5575 6043 5.825593 AGATACAAAACCACCAGAGAGAA 57.174 39.130 0.00 0.00 0.00 2.87
5671 6145 1.290955 CGTCCTACACGCAAAGGGA 59.709 57.895 0.00 0.00 42.87 4.20
5776 6250 3.058155 TGCAACAACACGTTAACACAAGT 60.058 39.130 6.39 0.00 35.52 3.16
5808 6285 2.880268 CTGACAGATGAGTGGTGCAAAA 59.120 45.455 0.00 0.00 0.00 2.44
5856 6333 4.675114 CACGTGTTGAATTTTCTACAAGCC 59.325 41.667 7.58 3.60 42.71 4.35
5884 6361 2.439338 TTGTGGTGGCTGCAACGT 60.439 55.556 0.50 0.00 0.00 3.99
5901 6378 1.071471 CCAACAAGGGTCAGCTCGT 59.929 57.895 0.00 0.00 0.00 4.18
5942 6419 5.008613 GTCAGAGAAACCATACAAAGCACAA 59.991 40.000 0.00 0.00 0.00 3.33
5960 6437 4.389374 ACACATACAAAACCCTGTCAGAG 58.611 43.478 0.00 0.00 0.00 3.35
6025 6502 0.834612 AAGACCACTGTCCGGTTGAA 59.165 50.000 0.00 0.00 42.81 2.69
6030 6507 0.393077 AGAACAAGACCACTGTCCGG 59.607 55.000 0.00 0.00 42.81 5.14
6168 6645 2.039084 CTGGGCTGGACTTTGAGTACTT 59.961 50.000 0.00 0.00 27.92 2.24
6194 6672 9.631452 ACTGAATGTATATGAACTATCACGATG 57.369 33.333 0.00 0.00 38.69 3.84
6195 6673 9.631452 CACTGAATGTATATGAACTATCACGAT 57.369 33.333 0.00 0.00 38.69 3.73
6313 6792 4.988598 ATGCGCGGCCCGGATTAG 62.989 66.667 8.83 0.00 46.30 1.73
6331 6810 0.907486 CTGATCTTCAGTCCCTGGCA 59.093 55.000 0.00 0.00 39.58 4.92
6342 6821 7.169982 CAGGTATATCGAACCAAACTGATCTTC 59.830 40.741 7.49 0.00 39.64 2.87
6345 6824 5.696724 CCAGGTATATCGAACCAAACTGATC 59.303 44.000 7.49 0.00 39.64 2.92
6346 6825 5.611374 CCAGGTATATCGAACCAAACTGAT 58.389 41.667 7.49 0.00 39.64 2.90
6351 6830 2.775384 AGGCCAGGTATATCGAACCAAA 59.225 45.455 5.01 0.00 39.64 3.28
6352 6831 2.404559 AGGCCAGGTATATCGAACCAA 58.595 47.619 5.01 0.00 39.64 3.67
6353 6832 2.097110 AGGCCAGGTATATCGAACCA 57.903 50.000 5.01 0.00 39.64 3.67
6354 6833 2.633481 AGAAGGCCAGGTATATCGAACC 59.367 50.000 5.01 0.00 37.27 3.62
6355 6834 4.058817 CAAGAAGGCCAGGTATATCGAAC 58.941 47.826 5.01 0.00 0.00 3.95
6356 6835 3.494398 GCAAGAAGGCCAGGTATATCGAA 60.494 47.826 5.01 0.00 0.00 3.71
6357 6836 2.037251 GCAAGAAGGCCAGGTATATCGA 59.963 50.000 5.01 0.00 0.00 3.59
6382 6861 3.702334 GATCGTTTCAGGCGCACGC 62.702 63.158 10.83 6.46 41.06 5.34
6383 6862 1.896339 TTGATCGTTTCAGGCGCACG 61.896 55.000 10.83 10.70 35.27 5.34
6384 6863 0.179215 CTTGATCGTTTCAGGCGCAC 60.179 55.000 10.83 0.00 35.27 5.34
6385 6864 1.298157 CCTTGATCGTTTCAGGCGCA 61.298 55.000 10.83 0.00 35.27 6.09
6386 6865 1.019278 TCCTTGATCGTTTCAGGCGC 61.019 55.000 0.00 0.00 35.27 6.53
6387 6866 1.438651 TTCCTTGATCGTTTCAGGCG 58.561 50.000 0.00 0.00 35.27 5.52
6388 6867 3.009723 TGATTCCTTGATCGTTTCAGGC 58.990 45.455 0.00 0.00 35.27 4.85
6389 6868 4.497006 GCATGATTCCTTGATCGTTTCAGG 60.497 45.833 0.00 0.00 35.27 3.86
6390 6869 4.497006 GGCATGATTCCTTGATCGTTTCAG 60.497 45.833 0.00 0.00 35.27 3.02
6391 6870 3.378112 GGCATGATTCCTTGATCGTTTCA 59.622 43.478 0.00 0.00 0.00 2.69
6392 6871 3.629398 AGGCATGATTCCTTGATCGTTTC 59.371 43.478 0.00 0.00 0.00 2.78
6393 6872 3.379372 CAGGCATGATTCCTTGATCGTTT 59.621 43.478 0.00 0.00 0.00 3.60
6394 6873 2.947652 CAGGCATGATTCCTTGATCGTT 59.052 45.455 0.00 0.00 0.00 3.85
6395 6874 2.569059 CAGGCATGATTCCTTGATCGT 58.431 47.619 0.00 0.00 0.00 3.73
6396 6875 1.878088 CCAGGCATGATTCCTTGATCG 59.122 52.381 0.00 0.00 0.00 3.69
6397 6876 2.621998 CACCAGGCATGATTCCTTGATC 59.378 50.000 0.00 0.00 0.00 2.92
6398 6877 2.242965 TCACCAGGCATGATTCCTTGAT 59.757 45.455 0.00 0.00 0.00 2.57
6399 6878 1.634973 TCACCAGGCATGATTCCTTGA 59.365 47.619 0.00 0.00 0.00 3.02
6400 6879 2.022195 CTCACCAGGCATGATTCCTTG 58.978 52.381 0.00 0.00 0.00 3.61
6401 6880 1.064166 CCTCACCAGGCATGATTCCTT 60.064 52.381 0.00 0.00 30.98 3.36
6402 6881 0.549950 CCTCACCAGGCATGATTCCT 59.450 55.000 0.00 0.00 30.98 3.36
6403 6882 3.106738 CCTCACCAGGCATGATTCC 57.893 57.895 0.00 0.00 30.98 3.01
6412 6891 2.739996 CCAGGCTAGCCTCACCAGG 61.740 68.421 33.94 25.94 46.28 4.45
6413 6892 2.739996 CCCAGGCTAGCCTCACCAG 61.740 68.421 33.94 21.13 46.28 4.00
6414 6893 2.688666 CCCAGGCTAGCCTCACCA 60.689 66.667 33.94 0.00 46.28 4.17
6415 6894 3.483869 CCCCAGGCTAGCCTCACC 61.484 72.222 33.94 6.55 46.28 4.02
6416 6895 2.689034 ACCCCAGGCTAGCCTCAC 60.689 66.667 33.94 6.98 46.28 3.51
6417 6896 2.688666 CACCCCAGGCTAGCCTCA 60.689 66.667 33.94 0.00 46.28 3.86
6418 6897 2.365635 TCACCCCAGGCTAGCCTC 60.366 66.667 33.94 8.24 46.28 4.70
6420 6899 1.853250 AAAGTCACCCCAGGCTAGCC 61.853 60.000 27.19 27.19 0.00 3.93
6421 6900 0.678048 CAAAGTCACCCCAGGCTAGC 60.678 60.000 6.04 6.04 0.00 3.42
6422 6901 0.693049 ACAAAGTCACCCCAGGCTAG 59.307 55.000 0.00 0.00 0.00 3.42
6423 6902 1.145571 AACAAAGTCACCCCAGGCTA 58.854 50.000 0.00 0.00 0.00 3.93
6424 6903 0.261696 AAACAAAGTCACCCCAGGCT 59.738 50.000 0.00 0.00 0.00 4.58
6425 6904 1.119684 AAAACAAAGTCACCCCAGGC 58.880 50.000 0.00 0.00 0.00 4.85
6426 6905 2.107366 ACAAAACAAAGTCACCCCAGG 58.893 47.619 0.00 0.00 0.00 4.45
6427 6906 4.795962 GCATACAAAACAAAGTCACCCCAG 60.796 45.833 0.00 0.00 0.00 4.45
6428 6907 3.068873 GCATACAAAACAAAGTCACCCCA 59.931 43.478 0.00 0.00 0.00 4.96
6429 6908 3.649073 GCATACAAAACAAAGTCACCCC 58.351 45.455 0.00 0.00 0.00 4.95
6430 6909 3.243267 ACGCATACAAAACAAAGTCACCC 60.243 43.478 0.00 0.00 0.00 4.61
6431 6910 3.959943 ACGCATACAAAACAAAGTCACC 58.040 40.909 0.00 0.00 0.00 4.02
6432 6911 5.171337 CAGAACGCATACAAAACAAAGTCAC 59.829 40.000 0.00 0.00 0.00 3.67
6433 6912 5.270083 CAGAACGCATACAAAACAAAGTCA 58.730 37.500 0.00 0.00 0.00 3.41
6434 6913 4.675114 CCAGAACGCATACAAAACAAAGTC 59.325 41.667 0.00 0.00 0.00 3.01
6435 6914 4.606961 CCAGAACGCATACAAAACAAAGT 58.393 39.130 0.00 0.00 0.00 2.66
6436 6915 3.425193 GCCAGAACGCATACAAAACAAAG 59.575 43.478 0.00 0.00 0.00 2.77
6437 6916 3.067461 AGCCAGAACGCATACAAAACAAA 59.933 39.130 0.00 0.00 0.00 2.83
6438 6917 2.621055 AGCCAGAACGCATACAAAACAA 59.379 40.909 0.00 0.00 0.00 2.83
6439 6918 2.226330 AGCCAGAACGCATACAAAACA 58.774 42.857 0.00 0.00 0.00 2.83
6440 6919 2.979813 CAAGCCAGAACGCATACAAAAC 59.020 45.455 0.00 0.00 0.00 2.43
6441 6920 2.030363 CCAAGCCAGAACGCATACAAAA 60.030 45.455 0.00 0.00 0.00 2.44
6442 6921 1.539388 CCAAGCCAGAACGCATACAAA 59.461 47.619 0.00 0.00 0.00 2.83
6443 6922 1.164411 CCAAGCCAGAACGCATACAA 58.836 50.000 0.00 0.00 0.00 2.41
6444 6923 1.305219 GCCAAGCCAGAACGCATACA 61.305 55.000 0.00 0.00 0.00 2.29
6445 6924 1.026718 AGCCAAGCCAGAACGCATAC 61.027 55.000 0.00 0.00 0.00 2.39
6446 6925 0.322456 AAGCCAAGCCAGAACGCATA 60.322 50.000 0.00 0.00 0.00 3.14
6447 6926 1.604593 AAGCCAAGCCAGAACGCAT 60.605 52.632 0.00 0.00 0.00 4.73
6448 6927 2.203337 AAGCCAAGCCAGAACGCA 60.203 55.556 0.00 0.00 0.00 5.24
6449 6928 2.256461 CAAGCCAAGCCAGAACGC 59.744 61.111 0.00 0.00 0.00 4.84
6450 6929 0.955428 TAGCAAGCCAAGCCAGAACG 60.955 55.000 0.00 0.00 0.00 3.95
6451 6930 1.467920 ATAGCAAGCCAAGCCAGAAC 58.532 50.000 0.00 0.00 0.00 3.01
6452 6931 2.220653 AATAGCAAGCCAAGCCAGAA 57.779 45.000 0.00 0.00 0.00 3.02
6453 6932 3.582998 ATAATAGCAAGCCAAGCCAGA 57.417 42.857 0.00 0.00 0.00 3.86
6454 6933 4.320788 GCTTATAATAGCAAGCCAAGCCAG 60.321 45.833 0.00 0.00 41.04 4.85
6455 6934 3.569701 GCTTATAATAGCAAGCCAAGCCA 59.430 43.478 0.00 0.00 41.04 4.75
6456 6935 4.166187 GCTTATAATAGCAAGCCAAGCC 57.834 45.455 0.00 0.00 41.04 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.