Multiple sequence alignment - TraesCS6D01G220900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G220900 chr6D 100.000 6415 0 0 1 6415 311550776 311544362 0.000000e+00 11847
1 TraesCS6D01G220900 chr6D 91.515 165 12 2 2409 2571 145462460 145462624 6.470000e-55 226
2 TraesCS6D01G220900 chr6B 94.813 2911 95 23 2743 5625 515066569 515069451 0.000000e+00 4488
3 TraesCS6D01G220900 chr6B 90.996 1466 71 27 1 1441 515063381 515064810 0.000000e+00 1919
4 TraesCS6D01G220900 chr6B 94.290 753 39 3 1993 2744 515065660 515066409 0.000000e+00 1149
5 TraesCS6D01G220900 chr6B 94.748 476 25 0 3607 4082 42338711 42338236 0.000000e+00 741
6 TraesCS6D01G220900 chr6B 91.789 475 10 17 1524 1995 515064996 515065444 9.070000e-178 634
7 TraesCS6D01G220900 chr6B 88.252 349 25 9 3227 3575 42339043 42338711 2.790000e-108 403
8 TraesCS6D01G220900 chr6B 86.161 224 23 3 6041 6257 515069853 515070075 1.080000e-57 235
9 TraesCS6D01G220900 chr6B 95.098 102 5 0 6314 6415 515070165 515070266 1.850000e-35 161
10 TraesCS6D01G220900 chr6A 91.571 2622 88 43 1 2559 448225446 448222895 0.000000e+00 3494
11 TraesCS6D01G220900 chr6A 96.658 778 25 1 3156 3933 448221684 448220908 0.000000e+00 1291
12 TraesCS6D01G220900 chr6A 96.774 651 20 1 3931 4580 448220795 448220145 0.000000e+00 1085
13 TraesCS6D01G220900 chr6A 88.966 870 67 14 4756 5614 448220145 448219294 0.000000e+00 1048
14 TraesCS6D01G220900 chr6A 95.482 332 11 2 2622 2953 448222895 448222568 1.580000e-145 527
15 TraesCS6D01G220900 chr6A 90.871 241 18 4 2952 3190 448221921 448221683 2.890000e-83 320
16 TraesCS6D01G220900 chr6A 85.022 227 25 4 6041 6258 448218949 448218723 8.370000e-54 222
17 TraesCS6D01G220900 chr6A 90.385 104 6 3 6314 6415 448218643 448218542 4.040000e-27 134
18 TraesCS6D01G220900 chr3A 93.575 856 37 1 3227 4082 679361081 679361918 0.000000e+00 1260
19 TraesCS6D01G220900 chr7B 96.429 476 17 0 3607 4082 442055867 442055392 0.000000e+00 785
20 TraesCS6D01G220900 chr7B 87.393 349 22 2 3227 3575 442056193 442055867 1.310000e-101 381
21 TraesCS6D01G220900 chr7B 89.205 176 15 4 2411 2584 304113177 304113350 3.890000e-52 217
22 TraesCS6D01G220900 chr2B 96.218 476 18 0 3607 4082 616506060 616506535 0.000000e+00 780
23 TraesCS6D01G220900 chr2B 87.679 349 21 2 3227 3575 616505734 616506060 2.810000e-103 387
24 TraesCS6D01G220900 chr2B 91.018 167 13 2 2413 2577 258157725 258157891 2.330000e-54 224
25 TraesCS6D01G220900 chr4A 94.130 477 28 0 3607 4083 695307940 695308416 0.000000e+00 726
26 TraesCS6D01G220900 chr4A 93.908 476 29 0 3607 4082 695255549 695256024 0.000000e+00 719
27 TraesCS6D01G220900 chr4A 86.533 349 31 10 3227 3575 695255217 695255549 2.830000e-98 370
28 TraesCS6D01G220900 chr4A 87.987 308 21 9 3227 3534 695307624 695307915 3.680000e-92 350
29 TraesCS6D01G220900 chr4A 91.667 168 11 3 2408 2573 150653477 150653311 5.000000e-56 230
30 TraesCS6D01G220900 chr2A 87.009 331 39 4 54 382 632604922 632604594 2.830000e-98 370
31 TraesCS6D01G220900 chr5D 90.476 168 14 2 2411 2576 461072764 461072597 3.010000e-53 220
32 TraesCS6D01G220900 chr7A 90.419 167 14 2 2407 2571 494786824 494786990 1.080000e-52 219
33 TraesCS6D01G220900 chr3D 89.595 173 15 3 2401 2571 87926171 87926000 3.890000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G220900 chr6D 311544362 311550776 6414 True 11847.000 11847 100.000000 1 6415 1 chr6D.!!$R1 6414
1 TraesCS6D01G220900 chr6B 515063381 515070266 6885 False 1431.000 4488 92.191167 1 6415 6 chr6B.!!$F1 6414
2 TraesCS6D01G220900 chr6B 42338236 42339043 807 True 572.000 741 91.500000 3227 4082 2 chr6B.!!$R1 855
3 TraesCS6D01G220900 chr6A 448218542 448225446 6904 True 1015.125 3494 91.966125 1 6415 8 chr6A.!!$R1 6414
4 TraesCS6D01G220900 chr3A 679361081 679361918 837 False 1260.000 1260 93.575000 3227 4082 1 chr3A.!!$F1 855
5 TraesCS6D01G220900 chr7B 442055392 442056193 801 True 583.000 785 91.911000 3227 4082 2 chr7B.!!$R1 855
6 TraesCS6D01G220900 chr2B 616505734 616506535 801 False 583.500 780 91.948500 3227 4082 2 chr2B.!!$F2 855
7 TraesCS6D01G220900 chr4A 695255217 695256024 807 False 544.500 719 90.220500 3227 4082 2 chr4A.!!$F1 855
8 TraesCS6D01G220900 chr4A 695307624 695308416 792 False 538.000 726 91.058500 3227 4083 2 chr4A.!!$F2 856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 728 0.321653 GGTCCATCACACGAAAGCCT 60.322 55.000 0.0 0.0 0.0 4.58 F
1453 1533 0.252761 CAATTTTGGGGGTCATGGGC 59.747 55.000 0.0 0.0 0.0 5.36 F
1962 2147 0.403271 ACTGGAATTGTGGAGCAGCT 59.597 50.000 0.0 0.0 0.0 4.24 F
3467 4720 0.630673 TGCCCAACCTGCCATATCTT 59.369 50.000 0.0 0.0 0.0 2.40 F
5185 6566 1.070134 ACCTGCGTAGTTTCAGCTCAA 59.930 47.619 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2137 1.155042 CACTTTCAGAGCTGCTCCAC 58.845 55.000 25.09 2.11 0.0 4.02 R
3094 4310 3.384146 TGAAGCTCAAAAAGAACATGCCA 59.616 39.130 0.00 0.00 0.0 4.92 R
3518 4771 4.443315 GGCAGCCTTACCATTTTTGCATAT 60.443 41.667 3.29 0.00 0.0 1.78 R
5255 6636 0.733150 CGTACTGAGTGAGCGATCCA 59.267 55.000 0.00 0.00 0.0 3.41 R
6187 7675 0.315251 GTGCTGGCCTTCTTTTGGAC 59.685 55.000 3.32 0.00 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
477 478 2.196595 CTGGGTGGAGGAGGACAAATA 58.803 52.381 0.00 0.00 0.00 1.40
529 533 4.754114 CAGCAGCAGAGTTTTCTAAAGACT 59.246 41.667 0.00 0.00 30.73 3.24
538 542 0.545787 TTCTAAAGACTGGGGCCGGA 60.546 55.000 5.05 0.00 0.00 5.14
644 652 3.066203 CACTCCCTGTTTACGTTTTGCTT 59.934 43.478 0.00 0.00 0.00 3.91
695 719 1.482182 CCTTCTCATCGGTCCATCACA 59.518 52.381 0.00 0.00 0.00 3.58
696 720 2.544685 CTTCTCATCGGTCCATCACAC 58.455 52.381 0.00 0.00 0.00 3.82
697 721 0.455815 TCTCATCGGTCCATCACACG 59.544 55.000 0.00 0.00 0.00 4.49
698 722 0.455815 CTCATCGGTCCATCACACGA 59.544 55.000 0.00 0.00 39.85 4.35
699 723 0.892063 TCATCGGTCCATCACACGAA 59.108 50.000 0.00 0.00 38.94 3.85
700 724 1.273886 TCATCGGTCCATCACACGAAA 59.726 47.619 0.00 0.00 38.94 3.46
701 725 1.660607 CATCGGTCCATCACACGAAAG 59.339 52.381 0.00 0.00 38.94 2.62
702 726 0.669318 TCGGTCCATCACACGAAAGC 60.669 55.000 0.00 0.00 31.79 3.51
703 727 1.635663 CGGTCCATCACACGAAAGCC 61.636 60.000 0.00 0.00 0.00 4.35
704 728 0.321653 GGTCCATCACACGAAAGCCT 60.322 55.000 0.00 0.00 0.00 4.58
775 808 3.961414 GGGCTTGTTGACCGGGGA 61.961 66.667 6.32 0.00 31.76 4.81
780 813 2.185310 CTTGTTGACCGGGGAGAGGG 62.185 65.000 6.32 0.00 0.00 4.30
781 814 3.400054 GTTGACCGGGGAGAGGGG 61.400 72.222 6.32 0.00 0.00 4.79
903 949 1.153628 CGCTGGCGCCTACTTTACT 60.154 57.895 29.70 0.00 0.00 2.24
936 982 2.278013 CTCTTCTCGCCCGTACGC 60.278 66.667 10.49 0.00 0.00 4.42
937 983 3.753070 CTCTTCTCGCCCGTACGCC 62.753 68.421 10.49 1.65 0.00 5.68
938 984 3.823330 CTTCTCGCCCGTACGCCT 61.823 66.667 10.49 0.00 0.00 5.52
1246 1310 3.102985 CGCAGTCGGAGATCGTCT 58.897 61.111 0.00 0.00 40.67 4.18
1315 1389 2.058798 GAAACGAGATGAGCGTGACAA 58.941 47.619 0.00 0.00 41.75 3.18
1333 1407 1.200020 CAACTGAAGGATTGGCGGTTC 59.800 52.381 0.00 0.00 0.00 3.62
1403 1477 7.355017 CCGATATTATTGGTGTTGAGATGTTG 58.645 38.462 2.11 0.00 0.00 3.33
1430 1504 5.298276 AGTTCGCAGATTTGGAGTTTTACAA 59.702 36.000 0.00 0.00 35.04 2.41
1453 1533 0.252761 CAATTTTGGGGGTCATGGGC 59.747 55.000 0.00 0.00 0.00 5.36
1467 1547 1.056125 ATGGGCTGATCGGTGATCCA 61.056 55.000 2.89 6.92 38.20 3.41
1468 1548 1.271127 TGGGCTGATCGGTGATCCAA 61.271 55.000 2.89 0.00 38.20 3.53
1922 2107 6.925610 TCATTATGTGGATACTTGCACTTC 57.074 37.500 0.00 0.00 43.95 3.01
1952 2137 3.402110 TCACTAGTGCACACTGGAATTG 58.598 45.455 21.04 8.62 41.75 2.32
1962 2147 0.403271 ACTGGAATTGTGGAGCAGCT 59.597 50.000 0.00 0.00 0.00 4.24
2190 2593 6.370718 AGGAGAACATCGTGGTTTTTATGTAC 59.629 38.462 0.00 0.00 32.44 2.90
2339 2742 4.780021 AGGATCACTAGTCATCAACCAACT 59.220 41.667 9.13 0.00 0.00 3.16
2433 2839 7.800300 AGTACTCCCTCCATTCCTAAATATC 57.200 40.000 0.00 0.00 0.00 1.63
2454 2860 6.765915 ATCAGCCCTTTTAGAGATTTCAAC 57.234 37.500 0.00 0.00 0.00 3.18
2515 2922 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2563 2970 4.635699 AAAGGCTTATATTAGGACCGGG 57.364 45.455 6.32 0.00 0.00 5.73
2588 2995 7.310858 GGGGGAGTAGTTAACAGAAGAACAATA 60.311 40.741 8.61 0.00 0.00 1.90
2707 3114 4.320023 TGTTGTGTGCGTCCATATAACTT 58.680 39.130 0.00 0.00 35.95 2.66
3082 4298 5.230726 CACTGCATCAAGACACAAAAGAAAC 59.769 40.000 0.00 0.00 0.00 2.78
3124 4340 5.571784 TCTTTTTGAGCTTCATATGGCTG 57.428 39.130 10.73 0.00 39.05 4.85
3154 4370 9.784680 AATTGTGTATAGTAGAAGTACAGAACG 57.215 33.333 0.00 0.00 35.38 3.95
3158 4374 9.861138 GTGTATAGTAGAAGTACAGAACGTATG 57.139 37.037 0.00 0.00 31.20 2.39
3190 4406 7.495279 CCCTTCTCTCAAGTTTGATGAAGATAG 59.505 40.741 23.86 14.82 42.99 2.08
3191 4407 7.011295 CCTTCTCTCAAGTTTGATGAAGATAGC 59.989 40.741 23.86 0.00 42.99 2.97
3192 4408 6.939622 TCTCTCAAGTTTGATGAAGATAGCA 58.060 36.000 0.00 0.00 36.46 3.49
3467 4720 0.630673 TGCCCAACCTGCCATATCTT 59.369 50.000 0.00 0.00 0.00 2.40
3518 4771 6.757237 ACAAGAAAAACATGCATCCAATACA 58.243 32.000 0.00 0.00 0.00 2.29
3801 5054 8.324191 TCTACAGTATTTCTTGGATGGAAGAT 57.676 34.615 0.00 0.00 31.98 2.40
4045 5414 3.501445 AGTCTGCTGAAGAATCTGTTTGC 59.499 43.478 0.00 0.00 36.40 3.68
4187 5556 7.439655 TGCCTTTTTACCATTGTCATTTGTAAC 59.560 33.333 0.00 0.00 0.00 2.50
4533 5902 7.052873 CAGAAGGATGATTTACCTGAACTGAT 58.947 38.462 0.00 0.00 36.22 2.90
4614 5984 5.695851 AACTAGCATGAAAAGTTGAGGTG 57.304 39.130 0.00 0.00 32.38 4.00
4619 5989 5.513233 AGCATGAAAAGTTGAGGTGGATAT 58.487 37.500 0.00 0.00 0.00 1.63
4697 6075 4.079558 AGCATTCTTATGTCAGGGGATGTT 60.080 41.667 0.00 0.00 34.12 2.71
4698 6076 4.037208 GCATTCTTATGTCAGGGGATGTTG 59.963 45.833 0.00 0.00 34.12 3.33
4699 6077 4.927267 TTCTTATGTCAGGGGATGTTGT 57.073 40.909 0.00 0.00 0.00 3.32
4754 6132 7.025365 CCATTGATGATTTGTTGTCTACACTG 58.975 38.462 0.00 0.00 36.21 3.66
4821 6199 8.726870 TTTTAGTTGTACTTGCTAGTGAGTTT 57.273 30.769 11.27 0.00 35.78 2.66
4835 6213 2.808543 GTGAGTTTCTTGCATCGGAACT 59.191 45.455 9.31 9.31 0.00 3.01
4893 6273 6.092259 GTGTTTAGTATTGGTCTGTGCCTTAG 59.908 42.308 0.00 0.00 0.00 2.18
4946 6327 3.740631 TCAGTATGAGCTGCTACATGG 57.259 47.619 18.52 11.31 42.56 3.66
4976 6357 3.196613 AGAAGGCGAACGTTCTGAC 57.803 52.632 24.80 19.68 46.46 3.51
5185 6566 1.070134 ACCTGCGTAGTTTCAGCTCAA 59.930 47.619 0.00 0.00 0.00 3.02
5255 6636 3.265791 GCGGATCTTTGAGTCTCATTGT 58.734 45.455 2.68 0.00 0.00 2.71
5330 6711 0.667993 ACAATGGTGTTTCTGGCACG 59.332 50.000 0.00 0.00 37.70 5.34
5352 6733 2.011947 CGATGAAGGAAGCAAGCATCA 58.988 47.619 0.00 0.00 36.13 3.07
5353 6734 2.421073 CGATGAAGGAAGCAAGCATCAA 59.579 45.455 0.00 0.00 36.13 2.57
5355 6736 4.274214 CGATGAAGGAAGCAAGCATCAATA 59.726 41.667 0.00 0.00 36.13 1.90
5357 6738 3.696051 TGAAGGAAGCAAGCATCAATACC 59.304 43.478 0.00 0.00 0.00 2.73
5365 6746 2.896801 GCATCAATACCTGCGGCGG 61.897 63.158 9.78 0.65 0.00 6.13
5369 6750 2.125269 AATACCTGCGGCGGTCAC 60.125 61.111 17.39 0.00 38.49 3.67
5378 6759 4.980805 GGCGGTCACAACTCGGCA 62.981 66.667 0.00 0.00 41.18 5.69
5383 6764 1.523758 GGTCACAACTCGGCAAGATT 58.476 50.000 0.00 0.00 0.00 2.40
5417 6798 0.460284 AAGGGTACAGCGCTTGATCG 60.460 55.000 7.50 0.00 46.69 3.69
5419 6800 0.249489 GGGTACAGCGCTTGATCGAT 60.249 55.000 7.50 0.00 0.00 3.59
5422 6803 1.783711 GTACAGCGCTTGATCGATCAG 59.216 52.381 25.95 20.32 38.19 2.90
5423 6804 0.174389 ACAGCGCTTGATCGATCAGT 59.826 50.000 25.95 17.17 38.19 3.41
5459 6843 7.348080 CATACTAGTATGTTCCTTGTCCTCA 57.652 40.000 27.86 0.00 38.42 3.86
5464 6848 4.777896 AGTATGTTCCTTGTCCTCAGCTTA 59.222 41.667 0.00 0.00 0.00 3.09
5465 6849 3.402628 TGTTCCTTGTCCTCAGCTTAC 57.597 47.619 0.00 0.00 0.00 2.34
5466 6850 2.288825 TGTTCCTTGTCCTCAGCTTACG 60.289 50.000 0.00 0.00 0.00 3.18
5467 6851 0.246635 TCCTTGTCCTCAGCTTACGC 59.753 55.000 0.00 0.00 0.00 4.42
5468 6852 1.078759 CCTTGTCCTCAGCTTACGCG 61.079 60.000 3.53 3.53 42.32 6.01
5469 6853 0.109272 CTTGTCCTCAGCTTACGCGA 60.109 55.000 15.93 0.00 42.32 5.87
5516 6904 9.817809 ATTGTATTGTACTGTTAGTGTATCCTG 57.182 33.333 0.00 0.00 0.00 3.86
5529 6917 8.674607 GTTAGTGTATCCTGAAAATAACCTTGG 58.325 37.037 0.00 0.00 0.00 3.61
5535 6923 0.821517 GAAAATAACCTTGGGGCCGG 59.178 55.000 0.00 0.00 35.63 6.13
5551 6939 2.678336 GGCCGGCTATATAAGAATGTGC 59.322 50.000 28.56 0.00 0.00 4.57
5553 6941 3.619979 GCCGGCTATATAAGAATGTGCCT 60.620 47.826 22.15 0.00 37.01 4.75
5559 6947 8.144478 CGGCTATATAAGAATGTGCCTATGTAT 58.856 37.037 0.00 0.00 37.01 2.29
5578 6966 4.452114 TGTATGTTGCTTTAGCTGTGTGAG 59.548 41.667 0.00 0.00 42.66 3.51
5579 6967 2.917933 TGTTGCTTTAGCTGTGTGAGT 58.082 42.857 0.00 0.00 42.66 3.41
5580 6968 4.066646 TGTTGCTTTAGCTGTGTGAGTA 57.933 40.909 0.00 0.00 42.66 2.59
5581 6969 4.641396 TGTTGCTTTAGCTGTGTGAGTAT 58.359 39.130 0.00 0.00 42.66 2.12
5582 6970 5.789521 TGTTGCTTTAGCTGTGTGAGTATA 58.210 37.500 0.00 0.00 42.66 1.47
5583 6971 6.406370 TGTTGCTTTAGCTGTGTGAGTATAT 58.594 36.000 0.00 0.00 42.66 0.86
5588 6976 7.148423 TGCTTTAGCTGTGTGAGTATATTTGTG 60.148 37.037 0.00 0.00 42.66 3.33
5589 6977 7.148407 GCTTTAGCTGTGTGAGTATATTTGTGT 60.148 37.037 0.00 0.00 38.21 3.72
5625 7020 1.225855 TGTGCGGTTAGCTCAACAAG 58.774 50.000 0.00 0.00 45.10 3.16
5626 7021 2.145037 TGTGCGGTTAGCTCAACAAGG 61.145 52.381 0.00 0.00 45.10 3.61
5627 7022 2.928416 GCGGTTAGCTCAACAAGGT 58.072 52.632 0.00 0.00 44.04 3.50
5628 7023 1.235724 GCGGTTAGCTCAACAAGGTT 58.764 50.000 0.00 0.00 44.04 3.50
5629 7024 1.607148 GCGGTTAGCTCAACAAGGTTT 59.393 47.619 0.00 0.00 44.04 3.27
5630 7025 2.604614 GCGGTTAGCTCAACAAGGTTTG 60.605 50.000 0.00 0.00 44.04 2.93
5631 7026 5.093296 GCGGTTAGCTCAACAAGGTTTGT 62.093 47.826 0.00 0.00 44.31 2.83
5640 7035 1.099689 ACAAGGTTTGTTGGGACACG 58.900 50.000 0.00 0.00 42.22 4.49
5641 7036 0.383949 CAAGGTTTGTTGGGACACGG 59.616 55.000 0.00 0.00 39.29 4.94
5642 7037 0.033894 AAGGTTTGTTGGGACACGGT 60.034 50.000 0.00 0.00 39.29 4.83
5643 7038 0.033894 AGGTTTGTTGGGACACGGTT 60.034 50.000 0.00 0.00 39.29 4.44
5644 7039 0.382873 GGTTTGTTGGGACACGGTTC 59.617 55.000 0.00 0.00 39.29 3.62
5645 7040 1.096416 GTTTGTTGGGACACGGTTCA 58.904 50.000 0.00 0.00 39.29 3.18
5646 7041 1.064952 GTTTGTTGGGACACGGTTCAG 59.935 52.381 0.00 0.00 39.29 3.02
5647 7042 0.464735 TTGTTGGGACACGGTTCAGG 60.465 55.000 0.00 0.00 39.29 3.86
5648 7043 1.338890 TGTTGGGACACGGTTCAGGA 61.339 55.000 0.00 0.00 39.29 3.86
5649 7044 0.179040 GTTGGGACACGGTTCAGGAA 60.179 55.000 0.00 0.00 39.29 3.36
5650 7045 0.768622 TTGGGACACGGTTCAGGAAT 59.231 50.000 0.00 0.00 39.29 3.01
5651 7046 0.036164 TGGGACACGGTTCAGGAATG 59.964 55.000 0.00 0.00 0.00 2.67
5652 7047 0.036306 GGGACACGGTTCAGGAATGT 59.964 55.000 0.00 0.00 0.00 2.71
5653 7048 1.439679 GGACACGGTTCAGGAATGTC 58.560 55.000 5.94 5.94 39.16 3.06
5654 7049 1.439679 GACACGGTTCAGGAATGTCC 58.560 55.000 3.87 0.00 34.83 4.02
5656 7051 1.420138 ACACGGTTCAGGAATGTCCTT 59.580 47.619 0.00 0.00 46.91 3.36
5657 7052 1.806542 CACGGTTCAGGAATGTCCTTG 59.193 52.381 0.00 0.00 46.91 3.61
5658 7053 0.804989 CGGTTCAGGAATGTCCTTGC 59.195 55.000 0.00 0.00 46.91 4.01
5659 7054 1.881925 CGGTTCAGGAATGTCCTTGCA 60.882 52.381 0.00 0.00 46.91 4.08
5660 7055 2.238521 GGTTCAGGAATGTCCTTGCAA 58.761 47.619 0.00 0.00 46.91 4.08
5661 7056 2.229784 GGTTCAGGAATGTCCTTGCAAG 59.770 50.000 19.93 19.93 46.91 4.01
5662 7057 2.887152 GTTCAGGAATGTCCTTGCAAGT 59.113 45.455 24.35 5.94 46.91 3.16
5663 7058 3.228188 TCAGGAATGTCCTTGCAAGTT 57.772 42.857 24.35 12.38 46.91 2.66
5664 7059 2.886523 TCAGGAATGTCCTTGCAAGTTG 59.113 45.455 24.35 10.80 46.91 3.16
5665 7060 1.615392 AGGAATGTCCTTGCAAGTTGC 59.385 47.619 24.35 21.17 46.91 4.17
5666 7061 3.016064 AGGAATGTCCTTGCAAGTTGCA 61.016 45.455 26.36 26.36 46.91 4.08
5684 7079 3.936902 GCAATGCTATGCAACCAAATG 57.063 42.857 0.00 0.00 43.62 2.32
5689 7084 2.761767 TGCTATGCAACCAAATGATGCT 59.238 40.909 0.00 2.59 40.66 3.79
5694 7089 9.675079 TGCTATGCAACCAAATGATGCTTTCAT 62.675 37.037 0.00 0.00 40.44 2.57
5695 7090 3.997681 TGCAACCAAATGATGCTTTCATG 59.002 39.130 10.87 0.00 44.51 3.07
5714 7109 6.114187 TCATGAGCAGACCTTTCTTTCTTA 57.886 37.500 0.00 0.00 0.00 2.10
5719 7114 7.227156 TGAGCAGACCTTTCTTTCTTATCTTT 58.773 34.615 0.00 0.00 0.00 2.52
5720 7115 7.721399 TGAGCAGACCTTTCTTTCTTATCTTTT 59.279 33.333 0.00 0.00 0.00 2.27
5721 7116 9.220767 GAGCAGACCTTTCTTTCTTATCTTTTA 57.779 33.333 0.00 0.00 0.00 1.52
5722 7117 9.004717 AGCAGACCTTTCTTTCTTATCTTTTAC 57.995 33.333 0.00 0.00 0.00 2.01
5723 7118 9.004717 GCAGACCTTTCTTTCTTATCTTTTACT 57.995 33.333 0.00 0.00 0.00 2.24
5746 7141 8.614469 ACTATTATTATTCAGAGCAGCCTTTC 57.386 34.615 0.00 0.00 0.00 2.62
5747 7142 6.890979 ATTATTATTCAGAGCAGCCTTTCC 57.109 37.500 0.00 0.00 0.00 3.13
5748 7143 4.516652 ATTATTCAGAGCAGCCTTTCCT 57.483 40.909 0.00 0.00 0.00 3.36
5749 7144 2.416680 ATTCAGAGCAGCCTTTCCTC 57.583 50.000 0.00 0.00 0.00 3.71
5751 7146 3.156157 CAGAGCAGCCTTTCCTCTG 57.844 57.895 2.89 2.89 44.40 3.35
5753 7148 0.903942 AGAGCAGCCTTTCCTCTGAG 59.096 55.000 0.00 0.00 34.82 3.35
5755 7150 1.277557 GAGCAGCCTTTCCTCTGAGAA 59.722 52.381 6.17 0.00 32.26 2.87
5756 7151 1.914798 AGCAGCCTTTCCTCTGAGAAT 59.085 47.619 6.17 0.00 32.26 2.40
5757 7152 3.110705 AGCAGCCTTTCCTCTGAGAATA 58.889 45.455 6.17 0.00 32.26 1.75
5758 7153 3.521126 AGCAGCCTTTCCTCTGAGAATAA 59.479 43.478 6.17 0.00 32.26 1.40
5759 7154 4.165758 AGCAGCCTTTCCTCTGAGAATAAT 59.834 41.667 6.17 0.00 32.26 1.28
5760 7155 5.367937 AGCAGCCTTTCCTCTGAGAATAATA 59.632 40.000 6.17 0.00 32.26 0.98
5761 7156 5.468409 GCAGCCTTTCCTCTGAGAATAATAC 59.532 44.000 6.17 0.00 32.26 1.89
5762 7157 6.687647 GCAGCCTTTCCTCTGAGAATAATACT 60.688 42.308 6.17 0.00 32.26 2.12
5763 7158 7.472100 GCAGCCTTTCCTCTGAGAATAATACTA 60.472 40.741 6.17 0.00 32.26 1.82
5764 7159 7.870445 CAGCCTTTCCTCTGAGAATAATACTAC 59.130 40.741 6.17 0.00 32.26 2.73
5765 7160 7.787424 AGCCTTTCCTCTGAGAATAATACTACT 59.213 37.037 6.17 0.00 0.00 2.57
5766 7161 8.085909 GCCTTTCCTCTGAGAATAATACTACTC 58.914 40.741 6.17 0.00 0.00 2.59
5767 7162 8.581578 CCTTTCCTCTGAGAATAATACTACTCC 58.418 40.741 6.17 0.00 0.00 3.85
5768 7163 7.747155 TTCCTCTGAGAATAATACTACTCCG 57.253 40.000 6.17 0.00 0.00 4.63
5769 7164 6.839454 TCCTCTGAGAATAATACTACTCCGT 58.161 40.000 6.17 0.00 0.00 4.69
5770 7165 7.971201 TCCTCTGAGAATAATACTACTCCGTA 58.029 38.462 6.17 0.00 0.00 4.02
5796 7191 3.923017 AAAAACTGAGGCACTGCATAC 57.077 42.857 2.82 0.00 41.55 2.39
5810 7205 1.554617 TGCATACAGGCAGTGCTTCTA 59.445 47.619 16.11 0.00 39.25 2.10
5816 7211 2.072298 CAGGCAGTGCTTCTAAGACAC 58.928 52.381 16.11 8.36 35.05 3.67
5829 7224 5.078411 TCTAAGACACCTTGAAGATCAGC 57.922 43.478 0.00 0.00 33.94 4.26
5831 7226 1.895798 AGACACCTTGAAGATCAGCGA 59.104 47.619 0.00 0.00 0.00 4.93
5833 7228 2.670414 GACACCTTGAAGATCAGCGAAG 59.330 50.000 0.00 0.00 0.00 3.79
5834 7229 2.037772 ACACCTTGAAGATCAGCGAAGT 59.962 45.455 0.00 0.00 0.00 3.01
5835 7230 2.670414 CACCTTGAAGATCAGCGAAGTC 59.330 50.000 0.00 0.00 0.00 3.01
5843 7238 0.731417 ATCAGCGAAGTCATGCAAGC 59.269 50.000 0.00 0.00 0.00 4.01
5848 7243 1.225854 GAAGTCATGCAAGCGCGAC 60.226 57.895 12.10 1.67 42.97 5.19
5851 7246 3.792047 TCATGCAAGCGCGACTGC 61.792 61.111 21.70 21.70 42.97 4.40
5852 7247 4.092652 CATGCAAGCGCGACTGCA 62.093 61.111 29.59 29.59 42.97 4.41
5853 7248 3.796443 ATGCAAGCGCGACTGCAG 61.796 61.111 30.36 13.48 42.97 4.41
5861 7256 2.806856 CGCGACTGCAGCCAGAATC 61.807 63.158 15.27 1.15 41.77 2.52
5862 7257 1.742880 GCGACTGCAGCCAGAATCA 60.743 57.895 15.27 0.00 41.77 2.57
5863 7258 1.975363 GCGACTGCAGCCAGAATCAC 61.975 60.000 15.27 0.00 41.77 3.06
5864 7259 1.690283 CGACTGCAGCCAGAATCACG 61.690 60.000 15.27 2.40 41.77 4.35
5865 7260 0.671781 GACTGCAGCCAGAATCACGT 60.672 55.000 15.27 0.00 41.77 4.49
5866 7261 0.671781 ACTGCAGCCAGAATCACGTC 60.672 55.000 15.27 0.00 41.77 4.34
5868 7263 1.078848 GCAGCCAGAATCACGTCCT 60.079 57.895 0.00 0.00 0.00 3.85
5871 7266 1.734465 CAGCCAGAATCACGTCCTTTC 59.266 52.381 0.00 0.00 0.00 2.62
5872 7267 0.721718 GCCAGAATCACGTCCTTTCG 59.278 55.000 0.00 0.00 0.00 3.46
5873 7268 0.721718 CCAGAATCACGTCCTTTCGC 59.278 55.000 0.00 0.00 0.00 4.70
5874 7269 1.673033 CCAGAATCACGTCCTTTCGCT 60.673 52.381 0.00 0.00 0.00 4.93
5878 7273 0.034896 ATCACGTCCTTTCGCTTGGT 59.965 50.000 0.00 0.00 0.00 3.67
5901 7296 2.704190 TTCCTTGGACCTCTGTCTCT 57.296 50.000 0.00 0.00 41.47 3.10
5903 7298 3.827817 TCCTTGGACCTCTGTCTCTAA 57.172 47.619 0.00 0.00 41.47 2.10
5904 7299 4.338795 TCCTTGGACCTCTGTCTCTAAT 57.661 45.455 0.00 0.00 41.47 1.73
5905 7300 4.026744 TCCTTGGACCTCTGTCTCTAATG 58.973 47.826 0.00 0.00 41.47 1.90
5908 7303 1.537135 GGACCTCTGTCTCTAATGCGC 60.537 57.143 0.00 0.00 41.47 6.09
5911 7306 1.211818 CTCTGTCTCTAATGCGCCGC 61.212 60.000 4.18 0.00 0.00 6.53
5914 7334 0.248907 TGTCTCTAATGCGCCGCTAC 60.249 55.000 11.67 0.00 0.00 3.58
5919 7339 3.454587 TAATGCGCCGCTACCTGGG 62.455 63.158 11.67 0.00 0.00 4.45
5935 7355 1.229400 GGGGATATCCTGGGCCGTA 60.229 63.158 21.18 0.00 35.95 4.02
5950 7370 1.379527 CCGTATGGGCAGAAACTTCC 58.620 55.000 0.00 0.00 0.00 3.46
5951 7371 1.339631 CCGTATGGGCAGAAACTTCCA 60.340 52.381 0.00 0.00 0.00 3.53
5952 7372 2.643551 CGTATGGGCAGAAACTTCCAT 58.356 47.619 0.00 0.00 42.12 3.41
5976 7396 0.248289 AGCCTGCATTGCATTGGAAC 59.752 50.000 18.37 4.32 38.13 3.62
5978 7398 1.406341 GCCTGCATTGCATTGGAACAT 60.406 47.619 18.37 0.00 38.13 2.71
5986 7406 5.354792 GCATTGCATTGGAACATTGGTTAAT 59.645 36.000 10.41 0.00 39.76 1.40
6011 7466 5.104982 TGTTTTTCTCATTTCTTGGCTTGGT 60.105 36.000 0.00 0.00 0.00 3.67
6015 7470 3.822735 TCTCATTTCTTGGCTTGGTTGAG 59.177 43.478 0.00 0.00 0.00 3.02
6030 7485 3.777522 TGGTTGAGAAAACCCCAACAATT 59.222 39.130 4.86 0.00 41.22 2.32
6031 7486 4.126437 GGTTGAGAAAACCCCAACAATTG 58.874 43.478 3.24 3.24 41.22 2.32
6034 7489 3.390639 TGAGAAAACCCCAACAATTGCAT 59.609 39.130 5.05 0.00 0.00 3.96
6035 7490 4.141528 TGAGAAAACCCCAACAATTGCATT 60.142 37.500 5.05 0.00 0.00 3.56
6036 7491 4.388485 AGAAAACCCCAACAATTGCATTC 58.612 39.130 5.05 0.00 0.00 2.67
6037 7492 2.857186 AACCCCAACAATTGCATTCC 57.143 45.000 5.05 0.00 0.00 3.01
6038 7493 2.028561 ACCCCAACAATTGCATTCCT 57.971 45.000 5.05 0.00 0.00 3.36
6039 7494 1.901833 ACCCCAACAATTGCATTCCTC 59.098 47.619 5.05 0.00 0.00 3.71
6053 7541 7.857734 TTGCATTCCTCGACATAATTTAGAA 57.142 32.000 0.00 0.00 0.00 2.10
6070 7558 5.880054 TTAGAAGACTTACATGCTTTGGC 57.120 39.130 0.00 0.00 39.26 4.52
6116 7604 1.764454 TGCTAGCCCGGCCAAGATA 60.764 57.895 13.29 0.00 0.00 1.98
6119 7607 1.074775 TAGCCCGGCCAAGATACCT 60.075 57.895 5.55 0.00 0.00 3.08
6139 7627 4.159135 ACCTATTATTATAGCCACGGTCCG 59.841 45.833 10.48 10.48 33.73 4.79
6140 7628 4.159135 CCTATTATTATAGCCACGGTCCGT 59.841 45.833 12.23 12.23 35.35 4.69
6152 7640 0.668096 CGGTCCGTCCAAATTCGTCA 60.668 55.000 2.08 0.00 35.57 4.35
6155 7643 0.393448 TCCGTCCAAATTCGTCACCA 59.607 50.000 0.00 0.00 0.00 4.17
6161 7649 4.390603 CGTCCAAATTCGTCACCAGAATAA 59.609 41.667 0.00 0.00 37.34 1.40
6178 7666 6.726230 CAGAATAATCTGTCAGCAATCCAAG 58.274 40.000 0.00 0.00 46.60 3.61
6179 7667 5.298777 AGAATAATCTGTCAGCAATCCAAGC 59.701 40.000 0.00 0.00 33.59 4.01
6180 7668 2.502142 ATCTGTCAGCAATCCAAGCA 57.498 45.000 0.00 0.00 0.00 3.91
6182 7670 2.585330 TCTGTCAGCAATCCAAGCAAA 58.415 42.857 0.00 0.00 0.00 3.68
6183 7671 3.159472 TCTGTCAGCAATCCAAGCAAAT 58.841 40.909 0.00 0.00 0.00 2.32
6185 7673 4.766373 TCTGTCAGCAATCCAAGCAAATTA 59.234 37.500 0.00 0.00 0.00 1.40
6187 7675 5.472148 TGTCAGCAATCCAAGCAAATTAAG 58.528 37.500 0.00 0.00 0.00 1.85
6189 7685 5.574443 GTCAGCAATCCAAGCAAATTAAGTC 59.426 40.000 0.00 0.00 0.00 3.01
6191 7687 4.527816 AGCAATCCAAGCAAATTAAGTCCA 59.472 37.500 0.00 0.00 0.00 4.02
6195 7691 7.571798 GCAATCCAAGCAAATTAAGTCCAAAAG 60.572 37.037 0.00 0.00 0.00 2.27
6199 7695 6.424812 CCAAGCAAATTAAGTCCAAAAGAAGG 59.575 38.462 0.00 0.00 0.00 3.46
6200 7696 5.541845 AGCAAATTAAGTCCAAAAGAAGGC 58.458 37.500 0.00 0.00 0.00 4.35
6238 7735 2.224621 TGCTTCCTTTCTTCACAGGGAG 60.225 50.000 0.00 0.00 38.72 4.30
6257 7754 5.939296 AGGGAGTATAATCAGTACGAGTAGC 59.061 44.000 2.18 0.00 0.00 3.58
6259 7756 5.636965 GGAGTATAATCAGTACGAGTAGCGA 59.363 44.000 2.18 0.00 44.57 4.93
6260 7757 6.400940 GGAGTATAATCAGTACGAGTAGCGAC 60.401 46.154 2.18 0.00 44.57 5.19
6261 7758 6.222389 AGTATAATCAGTACGAGTAGCGACT 58.778 40.000 0.00 0.00 44.57 4.18
6262 7759 3.677190 AATCAGTACGAGTAGCGACTG 57.323 47.619 3.45 0.00 44.57 3.51
6263 7760 1.366679 TCAGTACGAGTAGCGACTGG 58.633 55.000 3.45 5.73 42.75 4.00
6264 7761 1.066645 TCAGTACGAGTAGCGACTGGA 60.067 52.381 15.48 0.00 42.75 3.86
6265 7762 1.941294 CAGTACGAGTAGCGACTGGAT 59.059 52.381 15.48 3.24 44.57 3.41
6266 7763 1.941294 AGTACGAGTAGCGACTGGATG 59.059 52.381 15.48 0.43 44.57 3.51
6270 7767 1.469940 CGAGTAGCGACTGGATGCTTT 60.470 52.381 3.45 0.00 44.57 3.51
6272 7769 2.349886 GAGTAGCGACTGGATGCTTTTG 59.650 50.000 3.45 0.00 42.48 2.44
6275 7772 0.169009 GCGACTGGATGCTTTTGTCC 59.831 55.000 0.00 0.00 35.02 4.02
6282 7779 5.513233 ACTGGATGCTTTTGTCCTATGATT 58.487 37.500 0.00 0.00 35.49 2.57
6297 7794 9.429109 TGTCCTATGATTAGTAAATCTGTACCA 57.571 33.333 0.00 0.00 41.83 3.25
6298 7795 9.694137 GTCCTATGATTAGTAAATCTGTACCAC 57.306 37.037 0.00 0.00 41.83 4.16
6303 7800 9.959721 ATGATTAGTAAATCTGTACCACAACTT 57.040 29.630 0.00 0.00 41.83 2.66
6307 7804 7.974482 AGTAAATCTGTACCACAACTTTACC 57.026 36.000 13.97 4.21 36.60 2.85
6308 7805 7.511268 AGTAAATCTGTACCACAACTTTACCA 58.489 34.615 13.97 0.00 36.60 3.25
6309 7806 8.161425 AGTAAATCTGTACCACAACTTTACCAT 58.839 33.333 13.97 2.47 36.60 3.55
6311 7808 7.448748 AATCTGTACCACAACTTTACCATTC 57.551 36.000 0.00 0.00 0.00 2.67
6312 7809 5.310451 TCTGTACCACAACTTTACCATTCC 58.690 41.667 0.00 0.00 0.00 3.01
6324 7857 5.182380 ACTTTACCATTCCACCATGTTTACG 59.818 40.000 0.00 0.00 0.00 3.18
6333 7866 5.416083 TCCACCATGTTTACGAGTAATCAG 58.584 41.667 11.04 3.65 30.93 2.90
6335 7868 5.291128 CCACCATGTTTACGAGTAATCAGAC 59.709 44.000 11.04 2.18 30.93 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
428 429 0.804156 CTTCTCGAAGCTTCCTCGCC 60.804 60.000 20.62 0.00 0.00 5.54
429 430 0.804156 CCTTCTCGAAGCTTCCTCGC 60.804 60.000 20.62 0.00 37.11 5.03
430 431 0.528470 ACCTTCTCGAAGCTTCCTCG 59.472 55.000 20.62 10.45 37.11 4.63
431 432 2.739379 CAAACCTTCTCGAAGCTTCCTC 59.261 50.000 20.62 0.00 37.11 3.71
432 433 2.551071 CCAAACCTTCTCGAAGCTTCCT 60.551 50.000 20.62 0.00 37.11 3.36
477 478 2.303660 AATCCCCATCTAACCCCAGT 57.696 50.000 0.00 0.00 0.00 4.00
644 652 7.114388 CGTTACATGCTATACGCTTTCTCAATA 59.886 37.037 0.00 0.00 40.11 1.90
724 753 3.054655 TGGACCAGAGCCCAACTTAATAC 60.055 47.826 0.00 0.00 0.00 1.89
952 998 2.231478 GCACTACTGTCTAAGAGCACCA 59.769 50.000 0.00 0.00 0.00 4.17
1054 1118 4.821589 CCCCTTCGAGGCGTCAGC 62.822 72.222 7.26 0.00 44.18 4.26
1055 1119 2.564553 CTTCCCCTTCGAGGCGTCAG 62.565 65.000 7.26 0.00 32.73 3.51
1056 1120 2.602267 TTCCCCTTCGAGGCGTCA 60.602 61.111 7.26 0.00 32.73 4.35
1126 1190 2.685380 CCCCTCCTCGGAGCTGTT 60.685 66.667 7.46 0.00 40.69 3.16
1128 1192 4.465446 TCCCCCTCCTCGGAGCTG 62.465 72.222 7.46 1.18 40.69 4.24
1315 1389 0.673644 CGAACCGCCAATCCTTCAGT 60.674 55.000 0.00 0.00 0.00 3.41
1333 1407 1.901650 GCCGCAAGAGAACTTCCACG 61.902 60.000 0.00 0.00 43.02 4.94
1403 1477 1.339151 ACTCCAAATCTGCGAACTCCC 60.339 52.381 0.00 0.00 0.00 4.30
1430 1504 2.905736 CCATGACCCCCAAAATTGAACT 59.094 45.455 0.00 0.00 0.00 3.01
1453 1533 2.611292 GAGCTTTTGGATCACCGATCAG 59.389 50.000 6.33 0.00 40.50 2.90
1495 1575 0.183971 TTTCAGAACTTGCGGGGGAA 59.816 50.000 0.00 0.00 0.00 3.97
1496 1576 0.404040 ATTTCAGAACTTGCGGGGGA 59.596 50.000 0.00 0.00 0.00 4.81
1497 1577 0.811281 GATTTCAGAACTTGCGGGGG 59.189 55.000 0.00 0.00 0.00 5.40
1498 1578 1.533625 TGATTTCAGAACTTGCGGGG 58.466 50.000 0.00 0.00 0.00 5.73
1499 1579 2.293122 TGTTGATTTCAGAACTTGCGGG 59.707 45.455 0.00 0.00 0.00 6.13
1502 1582 4.925068 ACTGTGTTGATTTCAGAACTTGC 58.075 39.130 0.00 0.00 33.93 4.01
1588 1771 8.964772 CCTATTTGGAGATTCTTGTGATTCTTT 58.035 33.333 0.00 0.00 38.35 2.52
1725 1910 6.008331 TCTCCTGAAAACAGCTACAGTAGTA 58.992 40.000 9.42 0.00 0.00 1.82
1726 1911 4.833380 TCTCCTGAAAACAGCTACAGTAGT 59.167 41.667 9.42 0.00 0.00 2.73
1727 1912 5.184096 TCTCTCCTGAAAACAGCTACAGTAG 59.816 44.000 2.85 2.85 0.00 2.57
1728 1913 5.077564 TCTCTCCTGAAAACAGCTACAGTA 58.922 41.667 0.00 0.00 0.00 2.74
1729 1914 3.898123 TCTCTCCTGAAAACAGCTACAGT 59.102 43.478 0.00 0.00 0.00 3.55
1730 1915 4.527509 TCTCTCCTGAAAACAGCTACAG 57.472 45.455 0.00 0.00 0.00 2.74
1731 1916 5.012046 TGAATCTCTCCTGAAAACAGCTACA 59.988 40.000 0.00 0.00 0.00 2.74
1732 1917 5.482908 TGAATCTCTCCTGAAAACAGCTAC 58.517 41.667 0.00 0.00 0.00 3.58
1845 2030 4.508551 TTCTGTCCAGCATCACCATTAT 57.491 40.909 0.00 0.00 0.00 1.28
1922 2107 4.111198 GTGTGCACTAGTGATCTGATCAG 58.889 47.826 27.08 17.07 40.53 2.90
1952 2137 1.155042 CACTTTCAGAGCTGCTCCAC 58.845 55.000 25.09 2.11 0.00 4.02
1962 2147 7.010367 GCAAAATGTTTCAATCACACTTTCAGA 59.990 33.333 0.00 0.00 0.00 3.27
2058 2461 3.383185 TCAACAAATGGTCCAGGAAACAC 59.617 43.478 0.00 0.00 0.00 3.32
2190 2593 1.402720 GGGTTGTTGGCAATGTCATCG 60.403 52.381 1.92 0.00 36.92 3.84
2253 2656 3.751479 ACGCCAGCATATACATCTTCA 57.249 42.857 0.00 0.00 0.00 3.02
2339 2742 7.337938 TCATACAAACTAGCTCATGGAAATGA 58.662 34.615 0.00 0.00 0.00 2.57
2402 2808 6.663734 AGGAATGGAGGGAGTACTTAATTTG 58.336 40.000 0.00 0.00 0.00 2.32
2421 2827 8.949421 TCTCTAAAAGGGCTGATATTTAGGAAT 58.051 33.333 0.00 0.00 36.48 3.01
2433 2839 5.617751 CGTGTTGAAATCTCTAAAAGGGCTG 60.618 44.000 0.00 0.00 0.00 4.85
2563 2970 5.479124 TGTTCTTCTGTTAACTACTCCCC 57.521 43.478 7.22 0.00 0.00 4.81
2707 3114 5.483685 AGTTACTCACAATGTTGAGGCTA 57.516 39.130 14.14 0.93 46.38 3.93
3082 4298 9.643693 AAAAAGAACATGCCAATATTGAACTAG 57.356 29.630 17.23 5.37 0.00 2.57
3094 4310 3.384146 TGAAGCTCAAAAAGAACATGCCA 59.616 39.130 0.00 0.00 0.00 4.92
3154 4370 5.675538 ACTTGAGAGAAGGGCAATACATAC 58.324 41.667 0.00 0.00 0.00 2.39
3158 4374 5.003804 TCAAACTTGAGAGAAGGGCAATAC 58.996 41.667 0.00 0.00 32.50 1.89
3190 4406 7.805071 GTGTAGTCCTGAAATTATAATGCATGC 59.195 37.037 11.82 11.82 0.00 4.06
3191 4407 8.292448 GGTGTAGTCCTGAAATTATAATGCATG 58.708 37.037 0.00 0.00 0.00 4.06
3192 4408 7.173218 CGGTGTAGTCCTGAAATTATAATGCAT 59.827 37.037 0.00 0.00 0.00 3.96
3467 4720 6.830324 AGACCTTGATAAAATCAGCAGCATAA 59.170 34.615 0.00 0.00 40.94 1.90
3518 4771 4.443315 GGCAGCCTTACCATTTTTGCATAT 60.443 41.667 3.29 0.00 0.00 1.78
4045 5414 8.058328 CACGTCATTAAGTGAATGCTTAGTATG 58.942 37.037 0.00 0.00 44.11 2.39
4187 5556 4.884668 TTCAGTACCAGGACCTTTACAG 57.115 45.455 11.19 4.98 0.00 2.74
4290 5659 2.909006 AGCTTCTCATCCTTGAAGGTCA 59.091 45.455 11.60 0.00 44.47 4.02
4619 5989 9.575868 TCCAAACAAGAACCAGTATAAATAACA 57.424 29.630 0.00 0.00 0.00 2.41
4639 6016 8.197439 CCCAAGATATTTTAGATGGTTCCAAAC 58.803 37.037 0.00 0.00 0.00 2.93
4697 6075 9.725019 AGAAACACAAAATAGTGAGATATGACA 57.275 29.630 0.57 0.00 42.05 3.58
4821 6199 4.119862 GTGCTATAAGTTCCGATGCAAGA 58.880 43.478 0.00 0.00 0.00 3.02
4893 6273 3.118223 AGAACCTTCAGCTAACATAGGCC 60.118 47.826 0.00 0.00 0.00 5.19
4946 6327 4.090210 CGTTCGCCTTCTCTTTAGACTTTC 59.910 45.833 0.00 0.00 0.00 2.62
4976 6357 1.063321 CGACTGTCTCACTGATCTCCG 59.937 57.143 6.21 0.00 0.00 4.63
5171 6552 9.846248 ACATTAAAATGATTGAGCTGAAACTAC 57.154 29.630 9.60 0.00 39.67 2.73
5255 6636 0.733150 CGTACTGAGTGAGCGATCCA 59.267 55.000 0.00 0.00 0.00 3.41
5330 6711 1.442769 TGCTTGCTTCCTTCATCGTC 58.557 50.000 0.00 0.00 0.00 4.20
5357 6738 3.414700 GAGTTGTGACCGCCGCAG 61.415 66.667 0.00 0.00 36.53 5.18
5365 6746 2.143122 TCAATCTTGCCGAGTTGTGAC 58.857 47.619 0.00 0.00 0.00 3.67
5369 6750 1.135859 GTGCTCAATCTTGCCGAGTTG 60.136 52.381 0.00 0.00 0.00 3.16
5375 6756 1.538047 TCAAGGTGCTCAATCTTGCC 58.462 50.000 0.00 0.00 38.13 4.52
5378 6759 3.726557 TGGATCAAGGTGCTCAATCTT 57.273 42.857 0.00 0.00 0.00 2.40
5422 6803 6.904498 CATACTAGTATGTACCTCAGCAGAC 58.096 44.000 27.86 0.00 38.42 3.51
5438 6819 4.160626 GCTGAGGACAAGGAACATACTAGT 59.839 45.833 0.00 0.00 0.00 2.57
5464 6848 6.700081 ACAATACTACATATTCACATTCGCGT 59.300 34.615 5.77 0.00 30.54 6.01
5465 6849 7.105494 ACAATACTACATATTCACATTCGCG 57.895 36.000 0.00 0.00 30.54 5.87
5492 6876 8.584063 TCAGGATACACTAACAGTACAATACA 57.416 34.615 0.00 0.00 41.41 2.29
5495 6879 9.959721 ATTTTCAGGATACACTAACAGTACAAT 57.040 29.630 0.00 0.00 41.41 2.71
5500 6884 8.603304 AGGTTATTTTCAGGATACACTAACAGT 58.397 33.333 0.00 0.00 41.41 3.55
5501 6885 9.449719 AAGGTTATTTTCAGGATACACTAACAG 57.550 33.333 0.00 0.00 41.41 3.16
5503 6887 8.674607 CCAAGGTTATTTTCAGGATACACTAAC 58.325 37.037 0.00 0.00 41.41 2.34
5504 6888 7.832187 CCCAAGGTTATTTTCAGGATACACTAA 59.168 37.037 0.00 0.00 41.41 2.24
5514 6902 1.476488 CGGCCCCAAGGTTATTTTCAG 59.524 52.381 0.00 0.00 34.57 3.02
5516 6904 0.821517 CCGGCCCCAAGGTTATTTTC 59.178 55.000 0.00 0.00 34.57 2.29
5529 6917 3.270877 CACATTCTTATATAGCCGGCCC 58.729 50.000 26.15 0.00 0.00 5.80
5535 6923 9.823647 ACATACATAGGCACATTCTTATATAGC 57.176 33.333 0.00 0.00 0.00 2.97
5551 6939 5.586243 ACACAGCTAAAGCAACATACATAGG 59.414 40.000 4.54 0.00 45.16 2.57
5553 6941 6.169800 TCACACAGCTAAAGCAACATACATA 58.830 36.000 4.54 0.00 45.16 2.29
5559 6947 2.917933 ACTCACACAGCTAAAGCAACA 58.082 42.857 4.54 0.00 45.16 3.33
5581 6969 9.747293 CACCATGCATGATTTATAACACAAATA 57.253 29.630 28.31 0.00 0.00 1.40
5582 6970 8.259411 ACACCATGCATGATTTATAACACAAAT 58.741 29.630 28.31 0.00 0.00 2.32
5583 6971 7.544915 CACACCATGCATGATTTATAACACAAA 59.455 33.333 28.31 0.00 0.00 2.83
5610 7005 2.616842 ACAAACCTTGTTGAGCTAACCG 59.383 45.455 0.00 0.00 42.22 4.44
5625 7020 0.382873 GAACCGTGTCCCAACAAACC 59.617 55.000 0.00 0.00 37.08 3.27
5626 7021 1.064952 CTGAACCGTGTCCCAACAAAC 59.935 52.381 0.00 0.00 37.08 2.93
5627 7022 1.384525 CTGAACCGTGTCCCAACAAA 58.615 50.000 0.00 0.00 37.08 2.83
5628 7023 0.464735 CCTGAACCGTGTCCCAACAA 60.465 55.000 0.00 0.00 37.08 2.83
5629 7024 1.147376 CCTGAACCGTGTCCCAACA 59.853 57.895 0.00 0.00 0.00 3.33
5630 7025 0.179040 TTCCTGAACCGTGTCCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
5631 7026 0.768622 ATTCCTGAACCGTGTCCCAA 59.231 50.000 0.00 0.00 0.00 4.12
5632 7027 0.036164 CATTCCTGAACCGTGTCCCA 59.964 55.000 0.00 0.00 0.00 4.37
5633 7028 0.036306 ACATTCCTGAACCGTGTCCC 59.964 55.000 0.00 0.00 0.00 4.46
5634 7029 1.439679 GACATTCCTGAACCGTGTCC 58.560 55.000 2.20 0.00 34.58 4.02
5635 7030 1.439679 GGACATTCCTGAACCGTGTC 58.560 55.000 4.33 4.33 38.69 3.67
5636 7031 3.625745 GGACATTCCTGAACCGTGT 57.374 52.632 0.00 0.00 32.53 4.49
5642 7037 6.292610 GCAACTTGCAAGGACATTCCTGAA 62.293 45.833 29.18 0.00 44.14 3.02
5643 7038 4.863083 GCAACTTGCAAGGACATTCCTGA 61.863 47.826 29.18 0.00 44.14 3.86
5644 7039 2.608752 GCAACTTGCAAGGACATTCCTG 60.609 50.000 29.18 13.48 44.14 3.86
5645 7040 1.615392 GCAACTTGCAAGGACATTCCT 59.385 47.619 29.18 3.69 44.26 3.36
5646 7041 2.070262 GCAACTTGCAAGGACATTCC 57.930 50.000 29.18 2.00 44.26 3.01
5664 7059 3.523547 TCATTTGGTTGCATAGCATTGC 58.476 40.909 0.00 0.00 38.76 3.56
5665 7060 4.025229 GCATCATTTGGTTGCATAGCATTG 60.025 41.667 0.00 0.00 38.76 2.82
5666 7061 4.124238 GCATCATTTGGTTGCATAGCATT 58.876 39.130 0.00 0.00 38.76 3.56
5667 7062 3.386726 AGCATCATTTGGTTGCATAGCAT 59.613 39.130 0.00 0.00 38.76 3.79
5668 7063 2.761767 AGCATCATTTGGTTGCATAGCA 59.238 40.909 0.00 0.00 38.84 3.49
5669 7064 3.447918 AGCATCATTTGGTTGCATAGC 57.552 42.857 0.00 0.00 38.84 2.97
5670 7065 5.412640 TGAAAGCATCATTTGGTTGCATAG 58.587 37.500 0.00 0.00 44.63 2.23
5671 7066 5.402997 TGAAAGCATCATTTGGTTGCATA 57.597 34.783 0.00 0.00 44.63 3.14
5672 7067 4.274602 TGAAAGCATCATTTGGTTGCAT 57.725 36.364 0.00 0.00 44.63 3.96
5673 7068 3.747854 TGAAAGCATCATTTGGTTGCA 57.252 38.095 8.43 0.00 46.76 4.08
5674 7069 4.247258 TCATGAAAGCATCATTTGGTTGC 58.753 39.130 0.00 0.00 46.85 4.17
5675 7070 4.328983 GCTCATGAAAGCATCATTTGGTTG 59.671 41.667 0.00 0.00 46.85 3.77
5676 7071 4.020928 TGCTCATGAAAGCATCATTTGGTT 60.021 37.500 5.58 0.00 46.85 3.67
5677 7072 3.512329 TGCTCATGAAAGCATCATTTGGT 59.488 39.130 5.58 0.00 46.85 3.67
5689 7084 5.380043 AGAAAGAAAGGTCTGCTCATGAAA 58.620 37.500 0.00 0.00 33.05 2.69
5694 7089 6.365970 AGATAAGAAAGAAAGGTCTGCTCA 57.634 37.500 0.00 0.00 33.05 4.26
5695 7090 7.680442 AAAGATAAGAAAGAAAGGTCTGCTC 57.320 36.000 0.00 0.00 33.05 4.26
5720 7115 9.712305 GAAAGGCTGCTCTGAATAATAATAGTA 57.288 33.333 0.00 0.00 0.00 1.82
5721 7116 7.663493 GGAAAGGCTGCTCTGAATAATAATAGT 59.337 37.037 0.00 0.00 0.00 2.12
5722 7117 7.882271 AGGAAAGGCTGCTCTGAATAATAATAG 59.118 37.037 0.00 0.00 0.00 1.73
5723 7118 7.749666 AGGAAAGGCTGCTCTGAATAATAATA 58.250 34.615 0.00 0.00 0.00 0.98
5724 7119 6.608922 AGGAAAGGCTGCTCTGAATAATAAT 58.391 36.000 0.00 0.00 0.00 1.28
5726 7121 5.615289 GAGGAAAGGCTGCTCTGAATAATA 58.385 41.667 0.00 0.00 39.36 0.98
5728 7123 3.878778 GAGGAAAGGCTGCTCTGAATAA 58.121 45.455 0.00 0.00 39.36 1.40
5729 7124 3.550437 GAGGAAAGGCTGCTCTGAATA 57.450 47.619 0.00 0.00 39.36 1.75
5731 7126 3.944476 GAGGAAAGGCTGCTCTGAA 57.056 52.632 0.00 0.00 39.36 3.02
5735 7130 0.901124 TCTCAGAGGAAAGGCTGCTC 59.099 55.000 0.00 0.00 42.69 4.26
5736 7131 1.356124 TTCTCAGAGGAAAGGCTGCT 58.644 50.000 0.00 0.00 32.27 4.24
5737 7132 2.416680 ATTCTCAGAGGAAAGGCTGC 57.583 50.000 0.00 0.00 32.27 5.25
5739 7134 7.787424 AGTAGTATTATTCTCAGAGGAAAGGCT 59.213 37.037 0.00 0.00 0.00 4.58
5740 7135 7.958088 AGTAGTATTATTCTCAGAGGAAAGGC 58.042 38.462 0.00 0.00 0.00 4.35
5743 7138 7.778853 ACGGAGTAGTATTATTCTCAGAGGAAA 59.221 37.037 0.00 0.00 41.94 3.13
5745 7140 6.839454 ACGGAGTAGTATTATTCTCAGAGGA 58.161 40.000 0.00 0.00 41.94 3.71
5776 7171 3.221771 TGTATGCAGTGCCTCAGTTTTT 58.778 40.909 13.72 0.00 0.00 1.94
5777 7172 2.816087 CTGTATGCAGTGCCTCAGTTTT 59.184 45.455 13.72 0.00 37.92 2.43
5778 7173 2.430465 CTGTATGCAGTGCCTCAGTTT 58.570 47.619 13.72 0.00 37.92 2.66
5779 7174 1.339438 CCTGTATGCAGTGCCTCAGTT 60.339 52.381 13.72 0.00 41.02 3.16
5780 7175 0.251354 CCTGTATGCAGTGCCTCAGT 59.749 55.000 13.72 0.00 41.02 3.41
5781 7176 1.094073 GCCTGTATGCAGTGCCTCAG 61.094 60.000 13.72 16.59 41.02 3.35
5782 7177 1.078214 GCCTGTATGCAGTGCCTCA 60.078 57.895 13.72 8.12 41.02 3.86
5783 7178 1.078214 TGCCTGTATGCAGTGCCTC 60.078 57.895 13.72 3.51 41.02 4.70
5784 7179 3.080641 TGCCTGTATGCAGTGCCT 58.919 55.556 13.72 5.20 41.02 4.75
5790 7185 0.325933 AGAAGCACTGCCTGTATGCA 59.674 50.000 0.00 0.00 41.97 3.96
5791 7186 2.315925 TAGAAGCACTGCCTGTATGC 57.684 50.000 0.00 0.00 39.74 3.14
5792 7187 3.868077 GTCTTAGAAGCACTGCCTGTATG 59.132 47.826 0.00 0.00 0.00 2.39
5793 7188 3.515502 TGTCTTAGAAGCACTGCCTGTAT 59.484 43.478 0.00 0.00 0.00 2.29
5794 7189 2.897326 TGTCTTAGAAGCACTGCCTGTA 59.103 45.455 0.00 0.00 0.00 2.74
5795 7190 1.694150 TGTCTTAGAAGCACTGCCTGT 59.306 47.619 0.00 0.00 0.00 4.00
5796 7191 2.072298 GTGTCTTAGAAGCACTGCCTG 58.928 52.381 0.00 0.00 33.37 4.85
5802 7197 4.632153 TCTTCAAGGTGTCTTAGAAGCAC 58.368 43.478 0.00 7.76 37.66 4.40
5804 7199 5.482908 TGATCTTCAAGGTGTCTTAGAAGC 58.517 41.667 0.00 0.00 37.66 3.86
5810 7205 2.300152 TCGCTGATCTTCAAGGTGTCTT 59.700 45.455 0.00 0.00 0.00 3.01
5816 7211 2.964740 TGACTTCGCTGATCTTCAAGG 58.035 47.619 0.00 0.00 0.00 3.61
5829 7224 2.276244 CGCGCTTGCATGACTTCG 60.276 61.111 5.56 0.00 39.07 3.79
5831 7226 1.669115 AGTCGCGCTTGCATGACTT 60.669 52.632 5.56 0.00 36.34 3.01
5833 7228 2.097160 CAGTCGCGCTTGCATGAC 59.903 61.111 5.56 4.06 39.07 3.06
5834 7229 3.792047 GCAGTCGCGCTTGCATGA 61.792 61.111 23.63 0.20 39.07 3.07
5835 7230 3.994946 CTGCAGTCGCGCTTGCATG 62.995 63.158 28.66 20.78 42.97 4.06
5843 7238 2.806856 GATTCTGGCTGCAGTCGCG 61.807 63.158 14.71 7.49 42.97 5.87
5848 7243 1.364626 GGACGTGATTCTGGCTGCAG 61.365 60.000 10.11 10.11 0.00 4.41
5851 7246 1.734465 GAAAGGACGTGATTCTGGCTG 59.266 52.381 0.00 0.00 0.00 4.85
5852 7247 1.673033 CGAAAGGACGTGATTCTGGCT 60.673 52.381 0.00 0.00 0.00 4.75
5853 7248 0.721718 CGAAAGGACGTGATTCTGGC 59.278 55.000 0.00 0.00 0.00 4.85
5854 7249 0.721718 GCGAAAGGACGTGATTCTGG 59.278 55.000 0.00 0.00 35.59 3.86
5855 7250 1.714794 AGCGAAAGGACGTGATTCTG 58.285 50.000 0.00 0.00 35.59 3.02
5856 7251 2.069273 CAAGCGAAAGGACGTGATTCT 58.931 47.619 0.00 0.00 35.59 2.40
5857 7252 1.128692 CCAAGCGAAAGGACGTGATTC 59.871 52.381 0.00 0.00 35.59 2.52
5859 7254 0.034896 ACCAAGCGAAAGGACGTGAT 59.965 50.000 0.00 0.00 35.59 3.06
5861 7256 0.661020 AAACCAAGCGAAAGGACGTG 59.339 50.000 0.00 0.00 35.59 4.49
5862 7257 1.385528 AAAACCAAGCGAAAGGACGT 58.614 45.000 0.00 0.00 35.59 4.34
5863 7258 2.485266 AAAAACCAAGCGAAAGGACG 57.515 45.000 0.00 0.00 0.00 4.79
5892 7287 1.211818 GCGGCGCATTAGAGACAGAG 61.212 60.000 29.21 0.00 0.00 3.35
5897 7292 1.107538 AGGTAGCGGCGCATTAGAGA 61.108 55.000 35.02 6.68 0.00 3.10
5898 7293 0.941463 CAGGTAGCGGCGCATTAGAG 60.941 60.000 35.02 14.91 0.00 2.43
5899 7294 1.067416 CAGGTAGCGGCGCATTAGA 59.933 57.895 35.02 10.54 0.00 2.10
5901 7296 2.108157 CCAGGTAGCGGCGCATTA 59.892 61.111 35.02 16.16 0.00 1.90
5908 7303 0.252284 AGGATATCCCCAGGTAGCGG 60.252 60.000 18.56 0.00 36.42 5.52
5911 7306 1.958288 CCCAGGATATCCCCAGGTAG 58.042 60.000 18.56 3.25 36.42 3.18
5914 7334 2.234296 GGCCCAGGATATCCCCAGG 61.234 68.421 18.56 16.56 36.42 4.45
5919 7339 0.541863 CCATACGGCCCAGGATATCC 59.458 60.000 14.41 14.41 0.00 2.59
5921 7341 2.696864 CCCATACGGCCCAGGATAT 58.303 57.895 0.00 0.00 0.00 1.63
5935 7355 3.782992 AGAAATGGAAGTTTCTGCCCAT 58.217 40.909 1.44 0.00 44.46 4.00
5941 7361 4.013050 GCAGGCTAGAAATGGAAGTTTCT 58.987 43.478 7.03 7.03 46.88 2.52
5942 7362 3.758554 TGCAGGCTAGAAATGGAAGTTTC 59.241 43.478 0.00 0.00 38.16 2.78
5943 7363 3.766545 TGCAGGCTAGAAATGGAAGTTT 58.233 40.909 0.00 0.00 0.00 2.66
5944 7364 3.439857 TGCAGGCTAGAAATGGAAGTT 57.560 42.857 0.00 0.00 0.00 2.66
5945 7365 3.659183 ATGCAGGCTAGAAATGGAAGT 57.341 42.857 0.00 0.00 0.00 3.01
5946 7366 3.490419 GCAATGCAGGCTAGAAATGGAAG 60.490 47.826 0.00 0.00 0.00 3.46
5947 7367 2.428171 GCAATGCAGGCTAGAAATGGAA 59.572 45.455 0.00 0.00 0.00 3.53
5948 7368 2.026641 GCAATGCAGGCTAGAAATGGA 58.973 47.619 0.00 0.00 0.00 3.41
5949 7369 1.752498 TGCAATGCAGGCTAGAAATGG 59.248 47.619 2.72 0.00 33.32 3.16
5950 7370 3.728076 ATGCAATGCAGGCTAGAAATG 57.272 42.857 14.98 0.00 43.65 2.32
5951 7371 3.181469 CCAATGCAATGCAGGCTAGAAAT 60.181 43.478 14.98 0.00 43.65 2.17
5952 7372 2.166870 CCAATGCAATGCAGGCTAGAAA 59.833 45.455 14.98 0.00 43.65 2.52
5986 7406 5.816777 CCAAGCCAAGAAATGAGAAAAACAA 59.183 36.000 0.00 0.00 0.00 2.83
6003 7458 1.408969 GGGTTTTCTCAACCAAGCCA 58.591 50.000 6.11 0.00 42.03 4.75
6011 7466 3.198635 TGCAATTGTTGGGGTTTTCTCAA 59.801 39.130 7.40 0.00 0.00 3.02
6015 7470 3.501828 GGAATGCAATTGTTGGGGTTTTC 59.498 43.478 7.40 0.11 36.07 2.29
6030 7485 7.224753 GTCTTCTAAATTATGTCGAGGAATGCA 59.775 37.037 0.00 0.00 0.00 3.96
6031 7486 7.439655 AGTCTTCTAAATTATGTCGAGGAATGC 59.560 37.037 0.00 0.00 0.00 3.56
6034 7489 9.798994 GTAAGTCTTCTAAATTATGTCGAGGAA 57.201 33.333 0.00 0.00 0.00 3.36
6035 7490 8.963725 TGTAAGTCTTCTAAATTATGTCGAGGA 58.036 33.333 0.00 0.00 0.00 3.71
6036 7491 9.751542 ATGTAAGTCTTCTAAATTATGTCGAGG 57.248 33.333 0.00 0.00 0.00 4.63
6038 7493 9.031360 GCATGTAAGTCTTCTAAATTATGTCGA 57.969 33.333 0.00 0.00 0.00 4.20
6039 7494 9.035607 AGCATGTAAGTCTTCTAAATTATGTCG 57.964 33.333 0.00 0.00 0.00 4.35
6053 7541 2.350522 CTCGCCAAAGCATGTAAGTCT 58.649 47.619 0.00 0.00 39.83 3.24
6070 7558 2.996621 GTGGTGTTCATCTCTTTCCTCG 59.003 50.000 0.00 0.00 0.00 4.63
6116 7604 4.159135 CGGACCGTGGCTATAATAATAGGT 59.841 45.833 5.48 0.00 36.37 3.08
6119 7607 4.158394 GGACGGACCGTGGCTATAATAATA 59.842 45.833 27.26 0.00 41.37 0.98
6139 7627 5.873179 TTATTCTGGTGACGAATTTGGAC 57.127 39.130 0.00 0.00 35.92 4.02
6140 7628 6.316140 CAGATTATTCTGGTGACGAATTTGGA 59.684 38.462 6.72 0.00 44.78 3.53
6155 7643 5.298777 GCTTGGATTGCTGACAGATTATTCT 59.701 40.000 6.65 0.00 0.00 2.40
6161 7649 2.502142 TGCTTGGATTGCTGACAGAT 57.498 45.000 6.65 0.00 0.00 2.90
6169 7657 4.819769 TGGACTTAATTTGCTTGGATTGC 58.180 39.130 0.00 0.00 0.00 3.56
6173 7661 6.723298 TCTTTTGGACTTAATTTGCTTGGA 57.277 33.333 0.00 0.00 0.00 3.53
6174 7662 6.424812 CCTTCTTTTGGACTTAATTTGCTTGG 59.575 38.462 0.00 0.00 0.00 3.61
6176 7664 5.991606 GCCTTCTTTTGGACTTAATTTGCTT 59.008 36.000 0.00 0.00 0.00 3.91
6178 7666 4.690748 GGCCTTCTTTTGGACTTAATTTGC 59.309 41.667 0.00 0.00 0.00 3.68
6179 7667 5.852827 TGGCCTTCTTTTGGACTTAATTTG 58.147 37.500 3.32 0.00 32.71 2.32
6180 7668 5.511373 GCTGGCCTTCTTTTGGACTTAATTT 60.511 40.000 3.32 0.00 32.71 1.82
6182 7670 3.511540 GCTGGCCTTCTTTTGGACTTAAT 59.488 43.478 3.32 0.00 32.71 1.40
6183 7671 2.890945 GCTGGCCTTCTTTTGGACTTAA 59.109 45.455 3.32 0.00 32.71 1.85
6185 7673 1.332195 GCTGGCCTTCTTTTGGACTT 58.668 50.000 3.32 0.00 32.71 3.01
6187 7675 0.315251 GTGCTGGCCTTCTTTTGGAC 59.685 55.000 3.32 0.00 0.00 4.02
6189 7685 0.600057 GAGTGCTGGCCTTCTTTTGG 59.400 55.000 3.32 0.00 0.00 3.28
6191 7687 1.322442 GTGAGTGCTGGCCTTCTTTT 58.678 50.000 3.32 0.00 0.00 2.27
6195 7691 0.819259 TTGTGTGAGTGCTGGCCTTC 60.819 55.000 3.32 0.00 0.00 3.46
6199 7695 2.408333 ACTTTGTGTGAGTGCTGGC 58.592 52.632 0.00 0.00 0.00 4.85
6219 7716 3.778954 ACTCCCTGTGAAGAAAGGAAG 57.221 47.619 0.00 0.00 35.40 3.46
6220 7717 6.945636 TTATACTCCCTGTGAAGAAAGGAA 57.054 37.500 0.00 0.00 35.40 3.36
6227 7724 6.262496 TCGTACTGATTATACTCCCTGTGAAG 59.738 42.308 0.00 0.00 0.00 3.02
6238 7735 6.298103 CAGTCGCTACTCGTACTGATTATAC 58.702 44.000 0.00 0.00 42.95 1.47
6257 7754 1.813513 AGGACAAAAGCATCCAGTCG 58.186 50.000 0.00 0.00 37.47 4.18
6259 7756 4.574674 TCATAGGACAAAAGCATCCAGT 57.425 40.909 0.00 0.00 37.47 4.00
6260 7757 6.769822 ACTAATCATAGGACAAAAGCATCCAG 59.230 38.462 0.00 0.00 37.47 3.86
6261 7758 6.662755 ACTAATCATAGGACAAAAGCATCCA 58.337 36.000 0.00 0.00 37.47 3.41
6262 7759 8.677148 TTACTAATCATAGGACAAAAGCATCC 57.323 34.615 0.00 0.00 33.15 3.51
6265 7762 9.905713 AGATTTACTAATCATAGGACAAAAGCA 57.094 29.630 0.00 0.00 42.18 3.91
6272 7769 9.694137 GTGGTACAGATTTACTAATCATAGGAC 57.306 37.037 0.00 0.00 41.80 3.85
6282 7779 8.649591 TGGTAAAGTTGTGGTACAGATTTACTA 58.350 33.333 19.23 15.00 41.80 1.82
6290 7787 5.048991 GTGGAATGGTAAAGTTGTGGTACAG 60.049 44.000 0.00 0.00 41.80 2.74
6296 7793 4.280677 ACATGGTGGAATGGTAAAGTTGTG 59.719 41.667 0.00 0.00 31.46 3.33
6297 7794 4.479158 ACATGGTGGAATGGTAAAGTTGT 58.521 39.130 0.00 0.00 31.46 3.32
6298 7795 5.467035 AACATGGTGGAATGGTAAAGTTG 57.533 39.130 0.00 0.00 31.46 3.16
6300 7797 5.182380 CGTAAACATGGTGGAATGGTAAAGT 59.818 40.000 0.00 0.00 31.46 2.66
6301 7798 5.413213 TCGTAAACATGGTGGAATGGTAAAG 59.587 40.000 0.00 0.00 31.46 1.85
6302 7799 5.314529 TCGTAAACATGGTGGAATGGTAAA 58.685 37.500 0.00 0.00 31.46 2.01
6303 7800 4.907809 TCGTAAACATGGTGGAATGGTAA 58.092 39.130 0.00 0.00 31.46 2.85
6305 7802 3.244770 ACTCGTAAACATGGTGGAATGGT 60.245 43.478 0.00 0.00 31.46 3.55
6306 7803 3.343617 ACTCGTAAACATGGTGGAATGG 58.656 45.455 0.00 0.00 31.46 3.16
6307 7804 6.315144 TGATTACTCGTAAACATGGTGGAATG 59.685 38.462 0.00 0.00 0.00 2.67
6308 7805 6.411376 TGATTACTCGTAAACATGGTGGAAT 58.589 36.000 0.00 0.00 0.00 3.01
6309 7806 5.795972 TGATTACTCGTAAACATGGTGGAA 58.204 37.500 0.00 0.00 0.00 3.53
6311 7808 5.291128 GTCTGATTACTCGTAAACATGGTGG 59.709 44.000 0.00 0.00 29.52 4.61
6312 7809 5.291128 GGTCTGATTACTCGTAAACATGGTG 59.709 44.000 0.00 0.00 29.52 4.17
6324 7857 6.019479 CGCAACAAGATTAGGTCTGATTACTC 60.019 42.308 0.00 0.00 37.23 2.59
6333 7866 2.418976 GGGTTCGCAACAAGATTAGGTC 59.581 50.000 2.28 0.00 0.00 3.85
6335 7868 1.743394 GGGGTTCGCAACAAGATTAGG 59.257 52.381 2.28 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.