Multiple sequence alignment - TraesCS6D01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G220800 chr6D 100.000 3753 0 0 1 3753 311542124 311545876 0.000000e+00 6931
1 TraesCS6D01G220800 chr6D 81.618 272 37 11 245 506 375690252 375689984 2.940000e-51 213
2 TraesCS6D01G220800 chr6B 93.413 1928 82 28 1 1917 515072474 515070581 0.000000e+00 2815
3 TraesCS6D01G220800 chr6B 90.270 740 48 12 3029 3753 515069451 515068721 0.000000e+00 946
4 TraesCS6D01G220800 chr6B 89.961 259 19 2 2087 2340 515070421 515070165 1.010000e-85 327
5 TraesCS6D01G220800 chr6B 86.161 224 23 3 2397 2613 515070075 515069853 6.270000e-58 235
6 TraesCS6D01G220800 chr6A 89.086 1182 58 22 843 2009 448217208 448218333 0.000000e+00 1402
7 TraesCS6D01G220800 chr6A 88.138 725 57 14 3040 3753 448219294 448220000 0.000000e+00 835
8 TraesCS6D01G220800 chr6A 87.833 263 19 6 2087 2340 448218385 448218643 2.830000e-76 296
9 TraesCS6D01G220800 chr6A 85.022 227 25 4 2396 2613 448218723 448218949 4.880000e-54 222
10 TraesCS6D01G220800 chr2B 80.524 534 75 16 1 514 141720320 141719796 2.110000e-102 383
11 TraesCS6D01G220800 chr2B 79.630 270 45 7 247 512 777997576 777997313 6.400000e-43 185
12 TraesCS6D01G220800 chr3D 76.364 550 72 23 1 514 580344663 580344136 3.750000e-60 243
13 TraesCS6D01G220800 chr5A 83.271 269 35 7 245 511 322134363 322134623 4.840000e-59 239
14 TraesCS6D01G220800 chr5A 86.385 213 23 6 304 513 707468593 707468802 1.050000e-55 228
15 TraesCS6D01G220800 chr5A 77.481 262 42 14 1 256 616543245 616543495 1.410000e-29 141
16 TraesCS6D01G220800 chr3B 81.455 275 42 6 247 513 670370700 670370427 2.270000e-52 217
17 TraesCS6D01G220800 chr3B 79.636 275 43 8 245 515 60406057 60405792 6.400000e-43 185
18 TraesCS6D01G220800 chr4D 82.022 267 32 8 1 260 307806598 307806855 2.940000e-51 213
19 TraesCS6D01G220800 chr2D 81.298 262 34 12 3 257 609634170 609634423 8.220000e-47 198
20 TraesCS6D01G220800 chr2D 81.858 226 35 6 11 232 555225516 555225293 6.400000e-43 185
21 TraesCS6D01G220800 chr1D 80.545 257 43 7 260 514 46391620 46391871 1.380000e-44 191
22 TraesCS6D01G220800 chr7A 83.249 197 25 4 37 232 716249806 716249617 1.390000e-39 174
23 TraesCS6D01G220800 chr1B 81.604 212 31 7 1 212 242745045 242744842 6.450000e-38 169
24 TraesCS6D01G220800 chr3A 90.385 104 7 2 164 265 213602627 213602525 2.350000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G220800 chr6D 311542124 311545876 3752 False 6931.00 6931 100.00000 1 3753 1 chr6D.!!$F1 3752
1 TraesCS6D01G220800 chr6B 515068721 515072474 3753 True 1080.75 2815 89.95125 1 3753 4 chr6B.!!$R1 3752
2 TraesCS6D01G220800 chr6A 448217208 448220000 2792 False 688.75 1402 87.51975 843 3753 4 chr6A.!!$F1 2910
3 TraesCS6D01G220800 chr2B 141719796 141720320 524 True 383.00 383 80.52400 1 514 1 chr2B.!!$R1 513
4 TraesCS6D01G220800 chr3D 580344136 580344663 527 True 243.00 243 76.36400 1 514 1 chr3D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 136 0.456142 CGTGTCTCTCGCGGAATGAA 60.456 55.0 6.13 0.0 44.94 2.57 F
1695 1759 0.539901 ACGTCTACCTGGAGCAGTGT 60.540 55.0 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 1780 0.320374 AAGAGCGGAAATCGTGTCCA 59.680 50.0 3.38 0.0 41.72 4.02 R
3009 3268 0.033894 AGGTTTGTTGGGACACGGTT 60.034 50.0 0.00 0.0 39.29 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.402851 GCACAACCATGCCTCTCA 57.597 55.556 0.00 0.00 39.86 3.27
28 29 2.813754 CCATGCCTCTCACGAAAGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
29 30 3.253188 CCATGCCTCTCACGAAAGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
30 31 4.082571 CCATGCCTCTCACGAAAGAAAAAT 60.083 41.667 0.00 0.00 0.00 1.82
31 32 5.123820 CCATGCCTCTCACGAAAGAAAAATA 59.876 40.000 0.00 0.00 0.00 1.40
32 33 6.349280 CCATGCCTCTCACGAAAGAAAAATAA 60.349 38.462 0.00 0.00 0.00 1.40
33 34 6.627395 TGCCTCTCACGAAAGAAAAATAAA 57.373 33.333 0.00 0.00 0.00 1.40
34 35 7.033530 TGCCTCTCACGAAAGAAAAATAAAA 57.966 32.000 0.00 0.00 0.00 1.52
35 36 7.657336 TGCCTCTCACGAAAGAAAAATAAAAT 58.343 30.769 0.00 0.00 0.00 1.82
91 111 1.006102 CCGTGCCTCTCGTGAAAGT 60.006 57.895 0.00 0.00 0.00 2.66
116 136 0.456142 CGTGTCTCTCGCGGAATGAA 60.456 55.000 6.13 0.00 44.94 2.57
174 198 2.282251 ACGGTCGTGCCTCTCTCA 60.282 61.111 0.00 0.00 34.25 3.27
487 551 3.009363 TGATCATTGTGAGCCTCCTGAAA 59.991 43.478 0.00 0.00 30.48 2.69
501 565 2.222445 TCCTGAAAAAGCGCTCGTTAAC 59.778 45.455 12.06 7.11 0.00 2.01
545 609 0.603569 TGAGAGGTTCTCGAGTTGGC 59.396 55.000 13.13 1.30 46.25 4.52
617 681 1.889829 CAACCGGCCCAAGTTTCATAA 59.110 47.619 0.00 0.00 0.00 1.90
627 691 5.694458 GCCCAAGTTTCATAATTTTTGTCGT 59.306 36.000 0.00 0.00 0.00 4.34
768 832 1.936547 GCCCTCTTGTTTATGAGCTCG 59.063 52.381 9.64 0.00 0.00 5.03
956 1020 2.099638 CTAGCTCGTGCGCGTGTA 59.900 61.111 20.50 10.83 45.42 2.90
1154 1218 1.975327 CCTTCCAGAGCAACCTCGA 59.025 57.895 0.00 0.00 43.05 4.04
1695 1759 0.539901 ACGTCTACCTGGAGCAGTGT 60.540 55.000 0.00 0.00 0.00 3.55
1716 1780 4.817464 TGTTACGTCAAGTACTGGCAAAAT 59.183 37.500 0.00 0.00 34.56 1.82
1725 1789 1.909700 ACTGGCAAAATGGACACGAT 58.090 45.000 0.00 0.00 0.00 3.73
1756 1823 5.929992 TCTTCACAGGGTACGTATTTTCTTG 59.070 40.000 0.00 0.00 0.00 3.02
1790 1861 3.006940 CGTGGTACAGTACAATGCCAAT 58.993 45.455 12.89 0.00 41.80 3.16
1807 1878 4.819088 TGCCAATTATGTTAAGCATCGCTA 59.181 37.500 0.00 0.00 38.25 4.26
1834 1905 7.750655 AGGAGTAAAACCATCTTCTTCTTCTT 58.249 34.615 0.00 0.00 0.00 2.52
1835 1906 8.221251 AGGAGTAAAACCATCTTCTTCTTCTTT 58.779 33.333 0.00 0.00 0.00 2.52
1836 1907 8.851145 GGAGTAAAACCATCTTCTTCTTCTTTT 58.149 33.333 0.00 0.00 0.00 2.27
1837 1908 9.885934 GAGTAAAACCATCTTCTTCTTCTTTTC 57.114 33.333 0.00 0.00 0.00 2.29
1838 1909 9.634021 AGTAAAACCATCTTCTTCTTCTTTTCT 57.366 29.630 0.00 0.00 0.00 2.52
1843 1914 9.809096 AACCATCTTCTTCTTCTTTTCTTTTTC 57.191 29.630 0.00 0.00 0.00 2.29
1853 1924 7.093992 TCTTCTTTTCTTTTTCCTTTTTGCGA 58.906 30.769 0.00 0.00 0.00 5.10
1880 1953 6.348868 GGAAGTAAAACCATCTTCAGCTTCAG 60.349 42.308 0.00 0.00 39.19 3.02
1891 1964 3.130280 TCAGCTTCAGCAGATCACAAA 57.870 42.857 0.75 0.00 45.16 2.83
1895 1968 3.633525 AGCTTCAGCAGATCACAAACAAA 59.366 39.130 0.75 0.00 45.16 2.83
1901 1974 4.921515 CAGCAGATCACAAACAAATCCTTG 59.078 41.667 0.00 0.00 38.61 3.61
1906 1979 6.480981 CAGATCACAAACAAATCCTTGCTTTT 59.519 34.615 0.00 0.00 35.84 2.27
1910 1983 6.534793 TCACAAACAAATCCTTGCTTTTCTTC 59.465 34.615 0.00 0.00 35.84 2.87
1911 1984 5.519927 ACAAACAAATCCTTGCTTTTCTTCG 59.480 36.000 0.00 0.00 35.84 3.79
1918 1991 2.774439 TTGCTTTTCTTCGCAAGTCC 57.226 45.000 0.00 0.00 40.84 3.85
1919 1992 0.586319 TGCTTTTCTTCGCAAGTCCG 59.414 50.000 0.00 0.00 39.48 4.79
1922 1995 2.222445 GCTTTTCTTCGCAAGTCCGTTA 59.778 45.455 0.00 0.00 39.48 3.18
1925 1998 5.427036 TTTTCTTCGCAAGTCCGTTATTT 57.573 34.783 0.00 0.00 39.48 1.40
1926 1999 5.427036 TTTCTTCGCAAGTCCGTTATTTT 57.573 34.783 0.00 0.00 39.48 1.82
1927 2000 5.427036 TTCTTCGCAAGTCCGTTATTTTT 57.573 34.783 0.00 0.00 39.48 1.94
1942 2034 7.745594 TCCGTTATTTTTAACCGATTTTCTTCG 59.254 33.333 0.00 0.00 38.83 3.79
1970 2063 7.894376 TGTTAACGTTTAACATTCCCTAGAG 57.106 36.000 5.91 0.00 33.05 2.43
1971 2064 7.444299 TGTTAACGTTTAACATTCCCTAGAGT 58.556 34.615 5.91 0.00 33.05 3.24
1988 2081 6.259638 CCTAGAGTAATGAAGTTCGAGACAC 58.740 44.000 0.00 0.00 0.00 3.67
1991 2084 4.227538 AGTAATGAAGTTCGAGACACACG 58.772 43.478 0.00 0.00 0.00 4.49
1997 2090 0.435008 GTTCGAGACACACGCATGAC 59.565 55.000 0.00 0.00 0.00 3.06
2005 2098 4.314961 AGACACACGCATGACTTCAAATA 58.685 39.130 0.00 0.00 0.00 1.40
2009 2102 5.023920 CACACGCATGACTTCAAATATGTC 58.976 41.667 0.00 0.00 33.81 3.06
2019 2117 6.917477 TGACTTCAAATATGTCAAACAACAGC 59.083 34.615 0.00 0.00 38.82 4.40
2020 2118 6.804677 ACTTCAAATATGTCAAACAACAGCA 58.195 32.000 0.00 0.00 31.50 4.41
2021 2119 6.919662 ACTTCAAATATGTCAAACAACAGCAG 59.080 34.615 0.00 0.00 31.50 4.24
2028 2126 6.833342 ATGTCAAACAACAGCAGAAAATTC 57.167 33.333 0.00 0.00 31.50 2.17
2031 2129 7.487484 TGTCAAACAACAGCAGAAAATTCATA 58.513 30.769 0.00 0.00 0.00 2.15
2032 2130 8.143193 TGTCAAACAACAGCAGAAAATTCATAT 58.857 29.630 0.00 0.00 0.00 1.78
2033 2131 8.981647 GTCAAACAACAGCAGAAAATTCATATT 58.018 29.630 0.00 0.00 0.00 1.28
2041 2139 9.888878 ACAGCAGAAAATTCATATTAATCATCG 57.111 29.630 0.00 0.00 0.00 3.84
2042 2140 8.847567 CAGCAGAAAATTCATATTAATCATCGC 58.152 33.333 0.00 0.00 0.00 4.58
2043 2141 8.570488 AGCAGAAAATTCATATTAATCATCGCA 58.430 29.630 0.00 0.00 0.00 5.10
2044 2142 8.847567 GCAGAAAATTCATATTAATCATCGCAG 58.152 33.333 0.00 0.00 0.00 5.18
2045 2143 8.847567 CAGAAAATTCATATTAATCATCGCAGC 58.152 33.333 0.00 0.00 0.00 5.25
2046 2144 8.790718 AGAAAATTCATATTAATCATCGCAGCT 58.209 29.630 0.00 0.00 0.00 4.24
2047 2145 9.403110 GAAAATTCATATTAATCATCGCAGCTT 57.597 29.630 0.00 0.00 0.00 3.74
2048 2146 9.754382 AAAATTCATATTAATCATCGCAGCTTT 57.246 25.926 0.00 0.00 0.00 3.51
2051 2149 8.607441 TTCATATTAATCATCGCAGCTTTAGT 57.393 30.769 0.00 0.00 0.00 2.24
2052 2150 9.705290 TTCATATTAATCATCGCAGCTTTAGTA 57.295 29.630 0.00 0.00 0.00 1.82
2053 2151 9.358872 TCATATTAATCATCGCAGCTTTAGTAG 57.641 33.333 0.00 0.00 0.00 2.57
2054 2152 9.144747 CATATTAATCATCGCAGCTTTAGTAGT 57.855 33.333 0.00 0.00 0.00 2.73
2056 2154 7.925703 TTAATCATCGCAGCTTTAGTAGTAC 57.074 36.000 0.00 0.00 0.00 2.73
2057 2155 5.776173 ATCATCGCAGCTTTAGTAGTACT 57.224 39.130 8.14 8.14 0.00 2.73
2058 2156 5.578005 TCATCGCAGCTTTAGTAGTACTT 57.422 39.130 8.40 0.00 0.00 2.24
2059 2157 6.688637 TCATCGCAGCTTTAGTAGTACTTA 57.311 37.500 8.40 0.00 0.00 2.24
2060 2158 6.493116 TCATCGCAGCTTTAGTAGTACTTAC 58.507 40.000 8.40 0.00 0.00 2.34
2061 2159 5.885230 TCGCAGCTTTAGTAGTACTTACA 57.115 39.130 8.40 0.00 34.56 2.41
2062 2160 6.258230 TCGCAGCTTTAGTAGTACTTACAA 57.742 37.500 8.40 0.00 34.56 2.41
2063 2161 6.088824 TCGCAGCTTTAGTAGTACTTACAAC 58.911 40.000 8.40 0.00 34.56 3.32
2064 2162 6.072286 TCGCAGCTTTAGTAGTACTTACAACT 60.072 38.462 8.40 0.31 34.56 3.16
2065 2163 6.585322 CGCAGCTTTAGTAGTACTTACAACTT 59.415 38.462 8.40 0.00 34.56 2.66
2066 2164 7.115947 CGCAGCTTTAGTAGTACTTACAACTTT 59.884 37.037 8.40 0.00 34.56 2.66
2067 2165 9.415544 GCAGCTTTAGTAGTACTTACAACTTTA 57.584 33.333 8.40 0.00 34.56 1.85
2081 2179 8.188799 ACTTACAACTTTAAAAGAGAACTTGCC 58.811 33.333 0.00 0.00 36.39 4.52
2082 2180 5.902681 ACAACTTTAAAAGAGAACTTGCCC 58.097 37.500 0.00 0.00 36.39 5.36
2083 2181 5.656859 ACAACTTTAAAAGAGAACTTGCCCT 59.343 36.000 0.00 0.00 36.39 5.19
2084 2182 6.831868 ACAACTTTAAAAGAGAACTTGCCCTA 59.168 34.615 0.00 0.00 36.39 3.53
2085 2183 7.505923 ACAACTTTAAAAGAGAACTTGCCCTAT 59.494 33.333 0.00 0.00 36.39 2.57
2089 2195 5.780958 AAAAGAGAACTTGCCCTATACCT 57.219 39.130 0.00 0.00 36.39 3.08
2094 2200 4.040755 AGAACTTGCCCTATACCTGATGT 58.959 43.478 0.00 0.00 0.00 3.06
2095 2201 5.216622 AGAACTTGCCCTATACCTGATGTA 58.783 41.667 0.00 0.00 0.00 2.29
2099 2205 3.774734 TGCCCTATACCTGATGTACGAT 58.225 45.455 0.00 0.00 30.62 3.73
2123 2229 2.946762 GTCGGTTGCAACTCTGGC 59.053 61.111 27.64 16.10 0.00 4.85
2132 2240 0.737715 GCAACTCTGGCGACCACTAG 60.738 60.000 0.00 0.00 0.00 2.57
2134 2242 0.889306 AACTCTGGCGACCACTAGAC 59.111 55.000 0.00 0.00 0.00 2.59
2179 2287 2.689983 CAAAAGGTGATATGGAGGGCAC 59.310 50.000 0.00 0.00 0.00 5.01
2248 2361 4.287067 AGTTGATAAAGAGGAGGACAAGCA 59.713 41.667 0.00 0.00 0.00 3.91
2317 2430 1.743394 GGGGTTCGCAACAAGATTAGG 59.257 52.381 2.28 0.00 0.00 2.69
2319 2432 2.418976 GGGTTCGCAACAAGATTAGGTC 59.581 50.000 2.28 0.00 0.00 3.85
2328 2441 6.019479 CGCAACAAGATTAGGTCTGATTACTC 60.019 42.308 0.00 0.00 37.23 2.59
2340 2455 5.291128 GGTCTGATTACTCGTAAACATGGTG 59.709 44.000 0.00 0.00 29.52 4.17
2342 2457 5.186215 TCTGATTACTCGTAAACATGGTGGA 59.814 40.000 0.00 0.00 29.52 4.02
2343 2458 5.795972 TGATTACTCGTAAACATGGTGGAA 58.204 37.500 0.00 0.00 0.00 3.53
2344 2459 6.411376 TGATTACTCGTAAACATGGTGGAAT 58.589 36.000 0.00 0.00 0.00 3.01
2347 2462 3.244770 ACTCGTAAACATGGTGGAATGGT 60.245 43.478 0.00 0.00 31.46 3.55
2348 2463 4.020039 ACTCGTAAACATGGTGGAATGGTA 60.020 41.667 0.00 0.00 31.46 3.25
2349 2464 4.907809 TCGTAAACATGGTGGAATGGTAA 58.092 39.130 0.00 0.00 31.46 2.85
2350 2465 5.314529 TCGTAAACATGGTGGAATGGTAAA 58.685 37.500 0.00 0.00 31.46 2.01
2352 2467 5.182380 CGTAAACATGGTGGAATGGTAAAGT 59.818 40.000 0.00 0.00 31.46 2.66
2354 2469 5.467035 AACATGGTGGAATGGTAAAGTTG 57.533 39.130 0.00 0.00 31.46 3.16
2356 2471 4.280677 ACATGGTGGAATGGTAAAGTTGTG 59.719 41.667 0.00 0.00 31.46 3.33
2362 2511 5.048991 GTGGAATGGTAAAGTTGTGGTACAG 60.049 44.000 0.00 0.00 41.80 2.74
2370 2519 8.649591 TGGTAAAGTTGTGGTACAGATTTACTA 58.350 33.333 19.23 15.00 41.80 1.82
2380 2529 9.694137 GTGGTACAGATTTACTAATCATAGGAC 57.306 37.037 0.00 0.00 41.80 3.85
2391 2540 6.662755 ACTAATCATAGGACAAAAGCATCCA 58.337 36.000 0.00 0.00 37.47 3.41
2392 2541 6.769822 ACTAATCATAGGACAAAAGCATCCAG 59.230 38.462 0.00 0.00 37.47 3.86
2393 2542 4.574674 TCATAGGACAAAAGCATCCAGT 57.425 40.909 0.00 0.00 37.47 4.00
2395 2544 1.813513 AGGACAAAAGCATCCAGTCG 58.186 50.000 0.00 0.00 37.47 4.18
2414 2563 6.298103 CAGTCGCTACTCGTACTGATTATAC 58.702 44.000 0.00 0.00 42.95 1.47
2425 2574 6.262496 TCGTACTGATTATACTCCCTGTGAAG 59.738 42.308 0.00 0.00 0.00 3.02
2432 2581 6.945636 TTATACTCCCTGTGAAGAAAGGAA 57.054 37.500 0.00 0.00 35.40 3.36
2433 2582 3.778954 ACTCCCTGTGAAGAAAGGAAG 57.221 47.619 0.00 0.00 35.40 3.46
2453 2603 2.408333 ACTTTGTGTGAGTGCTGGC 58.592 52.632 0.00 0.00 0.00 4.85
2457 2607 0.819259 TTGTGTGAGTGCTGGCCTTC 60.819 55.000 3.32 0.00 0.00 3.46
2461 2611 1.322442 GTGAGTGCTGGCCTTCTTTT 58.678 50.000 3.32 0.00 0.00 2.27
2463 2613 0.600057 GAGTGCTGGCCTTCTTTTGG 59.400 55.000 3.32 0.00 0.00 3.28
2465 2615 0.315251 GTGCTGGCCTTCTTTTGGAC 59.685 55.000 3.32 0.00 0.00 4.02
2471 2628 4.021104 GCTGGCCTTCTTTTGGACTTAATT 60.021 41.667 3.32 0.00 32.71 1.40
2479 2636 6.723298 TCTTTTGGACTTAATTTGCTTGGA 57.277 33.333 0.00 0.00 0.00 3.53
2491 2649 2.502142 TGCTTGGATTGCTGACAGAT 57.498 45.000 6.65 0.00 0.00 2.90
2497 2655 5.298777 GCTTGGATTGCTGACAGATTATTCT 59.701 40.000 6.65 0.00 0.00 2.40
2512 2670 6.316140 CAGATTATTCTGGTGACGAATTTGGA 59.684 38.462 6.72 0.00 44.78 3.53
2513 2671 5.873179 TTATTCTGGTGACGAATTTGGAC 57.127 39.130 0.00 0.00 35.92 4.02
2533 2691 4.158394 GGACGGACCGTGGCTATAATAATA 59.842 45.833 27.26 0.00 41.37 0.98
2536 2694 4.159135 CGGACCGTGGCTATAATAATAGGT 59.841 45.833 5.48 0.00 36.37 3.08
2582 2740 2.996621 GTGGTGTTCATCTCTTTCCTCG 59.003 50.000 0.00 0.00 0.00 4.63
2599 2757 2.350522 CTCGCCAAAGCATGTAAGTCT 58.649 47.619 0.00 0.00 39.83 3.24
2613 2771 9.035607 AGCATGTAAGTCTTCTAAATTATGTCG 57.964 33.333 0.00 0.00 0.00 4.35
2614 2772 9.031360 GCATGTAAGTCTTCTAAATTATGTCGA 57.969 33.333 0.00 0.00 0.00 4.20
2616 2774 9.751542 ATGTAAGTCTTCTAAATTATGTCGAGG 57.248 33.333 0.00 0.00 0.00 4.63
2617 2775 8.963725 TGTAAGTCTTCTAAATTATGTCGAGGA 58.036 33.333 0.00 0.00 0.00 3.71
2620 2778 8.879342 AGTCTTCTAAATTATGTCGAGGAATG 57.121 34.615 0.00 0.00 0.00 2.67
2622 2780 7.224753 GTCTTCTAAATTATGTCGAGGAATGCA 59.775 37.037 0.00 0.00 0.00 3.96
2637 2833 3.501828 GGAATGCAATTGTTGGGGTTTTC 59.498 43.478 7.40 0.11 36.07 2.29
2641 2837 3.198635 TGCAATTGTTGGGGTTTTCTCAA 59.801 39.130 7.40 0.00 0.00 3.02
2649 2845 1.408969 GGGTTTTCTCAACCAAGCCA 58.591 50.000 6.11 0.00 42.03 4.75
2666 2897 5.816777 CCAAGCCAAGAAATGAGAAAAACAA 59.183 36.000 0.00 0.00 0.00 2.83
2700 2931 2.166870 CCAATGCAATGCAGGCTAGAAA 59.833 45.455 14.98 0.00 43.65 2.52
2701 2932 3.181469 CCAATGCAATGCAGGCTAGAAAT 60.181 43.478 14.98 0.00 43.65 2.17
2702 2933 3.728076 ATGCAATGCAGGCTAGAAATG 57.272 42.857 14.98 0.00 43.65 2.32
2703 2934 1.752498 TGCAATGCAGGCTAGAAATGG 59.248 47.619 2.72 0.00 33.32 3.16
2704 2935 2.026641 GCAATGCAGGCTAGAAATGGA 58.973 47.619 0.00 0.00 0.00 3.41
2705 2936 2.428171 GCAATGCAGGCTAGAAATGGAA 59.572 45.455 0.00 0.00 0.00 3.53
2706 2937 3.490419 GCAATGCAGGCTAGAAATGGAAG 60.490 47.826 0.00 0.00 0.00 3.46
2707 2938 3.659183 ATGCAGGCTAGAAATGGAAGT 57.341 42.857 0.00 0.00 0.00 3.01
2708 2939 3.439857 TGCAGGCTAGAAATGGAAGTT 57.560 42.857 0.00 0.00 0.00 2.66
2709 2940 3.766545 TGCAGGCTAGAAATGGAAGTTT 58.233 40.909 0.00 0.00 0.00 2.66
2710 2941 3.758554 TGCAGGCTAGAAATGGAAGTTTC 59.241 43.478 0.00 0.00 38.16 2.78
2711 2942 4.013050 GCAGGCTAGAAATGGAAGTTTCT 58.987 43.478 7.03 7.03 46.88 2.52
2717 2948 3.782992 AGAAATGGAAGTTTCTGCCCAT 58.217 40.909 1.44 0.00 44.46 4.00
2731 2962 2.696864 CCCATACGGCCCAGGATAT 58.303 57.895 0.00 0.00 0.00 1.63
2733 2964 0.541863 CCATACGGCCCAGGATATCC 59.458 60.000 14.41 14.41 0.00 2.59
2738 2969 2.234296 GGCCCAGGATATCCCCAGG 61.234 68.421 18.56 16.56 36.42 4.45
2741 2972 1.958288 CCCAGGATATCCCCAGGTAG 58.042 60.000 18.56 3.25 36.42 3.18
2742 2973 1.280457 CCAGGATATCCCCAGGTAGC 58.720 60.000 18.56 0.00 36.42 3.58
2743 2974 0.898320 CAGGATATCCCCAGGTAGCG 59.102 60.000 18.56 0.00 36.42 4.26
2744 2975 0.252284 AGGATATCCCCAGGTAGCGG 60.252 60.000 18.56 0.00 36.42 5.52
2745 2976 1.597461 GATATCCCCAGGTAGCGGC 59.403 63.158 0.00 0.00 0.00 6.53
2760 3019 1.211818 GCGGCGCATTAGAGACAGAG 61.212 60.000 29.21 0.00 0.00 3.35
2789 3048 2.485266 AAAAACCAAGCGAAAGGACG 57.515 45.000 0.00 0.00 0.00 4.79
2790 3049 1.385528 AAAACCAAGCGAAAGGACGT 58.614 45.000 0.00 0.00 35.59 4.34
2791 3050 0.661020 AAACCAAGCGAAAGGACGTG 59.339 50.000 0.00 0.00 35.59 4.49
2793 3052 0.034896 ACCAAGCGAAAGGACGTGAT 59.965 50.000 0.00 0.00 35.59 3.06
2795 3054 1.128692 CCAAGCGAAAGGACGTGATTC 59.871 52.381 0.00 0.00 35.59 2.52
2796 3055 2.069273 CAAGCGAAAGGACGTGATTCT 58.931 47.619 0.00 0.00 35.59 2.40
2797 3056 1.714794 AGCGAAAGGACGTGATTCTG 58.285 50.000 0.00 0.00 35.59 3.02
2798 3057 0.721718 GCGAAAGGACGTGATTCTGG 59.278 55.000 0.00 0.00 35.59 3.86
2799 3058 0.721718 CGAAAGGACGTGATTCTGGC 59.278 55.000 0.00 0.00 0.00 4.85
2800 3059 1.673033 CGAAAGGACGTGATTCTGGCT 60.673 52.381 0.00 0.00 0.00 4.75
2801 3060 1.734465 GAAAGGACGTGATTCTGGCTG 59.266 52.381 0.00 0.00 0.00 4.85
2804 3063 1.364626 GGACGTGATTCTGGCTGCAG 61.365 60.000 10.11 10.11 0.00 4.41
2809 3068 2.806856 GATTCTGGCTGCAGTCGCG 61.807 63.158 14.71 7.49 42.97 5.87
2817 3076 3.994946 CTGCAGTCGCGCTTGCATG 62.995 63.158 28.66 20.78 42.97 4.06
2818 3077 3.792047 GCAGTCGCGCTTGCATGA 61.792 61.111 23.63 0.20 39.07 3.07
2819 3078 2.097160 CAGTCGCGCTTGCATGAC 59.903 61.111 5.56 4.06 39.07 3.06
2821 3080 1.669115 AGTCGCGCTTGCATGACTT 60.669 52.632 5.56 0.00 36.34 3.01
2823 3082 2.276244 CGCGCTTGCATGACTTCG 60.276 61.111 5.56 0.00 39.07 3.79
2836 3095 2.964740 TGACTTCGCTGATCTTCAAGG 58.035 47.619 0.00 0.00 0.00 3.61
2842 3101 2.300152 TCGCTGATCTTCAAGGTGTCTT 59.700 45.455 0.00 0.00 0.00 3.01
2848 3107 5.482908 TGATCTTCAAGGTGTCTTAGAAGC 58.517 41.667 0.00 0.00 37.66 3.86
2850 3109 4.632153 TCTTCAAGGTGTCTTAGAAGCAC 58.368 43.478 0.00 7.76 37.66 4.40
2856 3115 2.072298 GTGTCTTAGAAGCACTGCCTG 58.928 52.381 0.00 0.00 33.37 4.85
2857 3116 1.694150 TGTCTTAGAAGCACTGCCTGT 59.306 47.619 0.00 0.00 0.00 4.00
2858 3117 2.897326 TGTCTTAGAAGCACTGCCTGTA 59.103 45.455 0.00 0.00 0.00 2.74
2860 3119 3.868077 GTCTTAGAAGCACTGCCTGTATG 59.132 47.826 0.00 0.00 0.00 2.39
2861 3120 2.315925 TAGAAGCACTGCCTGTATGC 57.684 50.000 0.00 0.00 39.74 3.14
2862 3121 0.325933 AGAAGCACTGCCTGTATGCA 59.674 50.000 0.00 0.00 41.97 3.96
2868 3127 3.080641 TGCCTGTATGCAGTGCCT 58.919 55.556 13.72 5.20 41.02 4.75
2869 3128 1.078214 TGCCTGTATGCAGTGCCTC 60.078 57.895 13.72 3.51 41.02 4.70
2870 3129 1.078214 GCCTGTATGCAGTGCCTCA 60.078 57.895 13.72 8.12 41.02 3.86
2871 3130 1.094073 GCCTGTATGCAGTGCCTCAG 61.094 60.000 13.72 16.59 41.02 3.35
2872 3131 0.251354 CCTGTATGCAGTGCCTCAGT 59.749 55.000 13.72 0.00 41.02 3.41
2873 3132 1.339438 CCTGTATGCAGTGCCTCAGTT 60.339 52.381 13.72 0.00 41.02 3.16
2874 3133 2.430465 CTGTATGCAGTGCCTCAGTTT 58.570 47.619 13.72 0.00 37.92 2.66
2875 3134 2.816087 CTGTATGCAGTGCCTCAGTTTT 59.184 45.455 13.72 0.00 37.92 2.43
2876 3135 3.221771 TGTATGCAGTGCCTCAGTTTTT 58.778 40.909 13.72 0.00 0.00 1.94
2907 3166 6.839454 ACGGAGTAGTATTATTCTCAGAGGA 58.161 40.000 0.00 0.00 41.94 3.71
2910 3169 8.293867 CGGAGTAGTATTATTCTCAGAGGAAAG 58.706 40.741 0.00 0.00 0.00 2.62
2911 3170 8.581578 GGAGTAGTATTATTCTCAGAGGAAAGG 58.418 40.741 0.00 0.00 0.00 3.11
2922 3181 2.416680 GAGGAAAGGCTGCTCTGAAT 57.583 50.000 0.00 0.00 39.36 2.57
2923 3182 3.550437 GAGGAAAGGCTGCTCTGAATA 57.450 47.619 0.00 0.00 39.36 1.75
2925 3184 4.459330 GAGGAAAGGCTGCTCTGAATAAT 58.541 43.478 0.00 0.00 39.36 1.28
2926 3185 5.615289 GAGGAAAGGCTGCTCTGAATAATA 58.385 41.667 0.00 0.00 39.36 0.98
2927 3186 6.006275 AGGAAAGGCTGCTCTGAATAATAA 57.994 37.500 0.00 0.00 0.00 1.40
2928 3187 6.608922 AGGAAAGGCTGCTCTGAATAATAAT 58.391 36.000 0.00 0.00 0.00 1.28
2929 3188 7.749666 AGGAAAGGCTGCTCTGAATAATAATA 58.250 34.615 0.00 0.00 0.00 0.98
2930 3189 7.882271 AGGAAAGGCTGCTCTGAATAATAATAG 59.118 37.037 0.00 0.00 0.00 1.73
2931 3190 7.663493 GGAAAGGCTGCTCTGAATAATAATAGT 59.337 37.037 0.00 0.00 0.00 2.12
2932 3191 9.712305 GAAAGGCTGCTCTGAATAATAATAGTA 57.288 33.333 0.00 0.00 0.00 1.82
2957 3216 7.680442 AAAGATAAGAAAGAAAGGTCTGCTC 57.320 36.000 0.00 0.00 33.05 4.26
2958 3217 6.365970 AGATAAGAAAGAAAGGTCTGCTCA 57.634 37.500 0.00 0.00 33.05 4.26
2963 3222 5.380043 AGAAAGAAAGGTCTGCTCATGAAA 58.620 37.500 0.00 0.00 33.05 2.69
2975 3234 3.512329 TGCTCATGAAAGCATCATTTGGT 59.488 39.130 5.58 0.00 46.85 3.67
2976 3235 4.020928 TGCTCATGAAAGCATCATTTGGTT 60.021 37.500 5.58 0.00 46.85 3.67
2977 3236 4.328983 GCTCATGAAAGCATCATTTGGTTG 59.671 41.667 0.00 0.00 46.85 3.77
2978 3237 4.247258 TCATGAAAGCATCATTTGGTTGC 58.753 39.130 0.00 0.00 46.85 4.17
2979 3238 3.747854 TGAAAGCATCATTTGGTTGCA 57.252 38.095 8.43 0.00 46.76 4.08
2980 3239 4.274602 TGAAAGCATCATTTGGTTGCAT 57.725 36.364 0.00 0.00 44.63 3.96
2981 3240 5.402997 TGAAAGCATCATTTGGTTGCATA 57.597 34.783 0.00 0.00 44.63 3.14
2982 3241 5.412640 TGAAAGCATCATTTGGTTGCATAG 58.587 37.500 0.00 0.00 44.63 2.23
2983 3242 3.447918 AGCATCATTTGGTTGCATAGC 57.552 42.857 0.00 0.00 38.84 2.97
2984 3243 2.761767 AGCATCATTTGGTTGCATAGCA 59.238 40.909 0.00 0.00 38.84 3.49
2985 3244 3.386726 AGCATCATTTGGTTGCATAGCAT 59.613 39.130 0.00 0.00 38.76 3.79
2986 3245 4.124238 GCATCATTTGGTTGCATAGCATT 58.876 39.130 0.00 0.00 38.76 3.56
2987 3246 4.025229 GCATCATTTGGTTGCATAGCATTG 60.025 41.667 0.00 0.00 38.76 2.82
2988 3247 3.523547 TCATTTGGTTGCATAGCATTGC 58.476 40.909 0.00 0.00 38.76 3.56
3006 3265 2.070262 GCAACTTGCAAGGACATTCC 57.930 50.000 29.18 2.00 44.26 3.01
3007 3266 1.615392 GCAACTTGCAAGGACATTCCT 59.385 47.619 29.18 3.69 44.26 3.36
3008 3267 2.608752 GCAACTTGCAAGGACATTCCTG 60.609 50.000 29.18 13.48 44.14 3.86
3009 3268 4.863083 GCAACTTGCAAGGACATTCCTGA 61.863 47.826 29.18 0.00 44.14 3.86
3010 3269 6.292610 GCAACTTGCAAGGACATTCCTGAA 62.293 45.833 29.18 0.00 44.14 3.02
3016 3275 3.625745 GGACATTCCTGAACCGTGT 57.374 52.632 0.00 0.00 32.53 4.49
3017 3276 1.439679 GGACATTCCTGAACCGTGTC 58.560 55.000 4.33 4.33 38.69 3.67
3018 3277 1.439679 GACATTCCTGAACCGTGTCC 58.560 55.000 2.20 0.00 34.58 4.02
3019 3278 0.036306 ACATTCCTGAACCGTGTCCC 59.964 55.000 0.00 0.00 0.00 4.46
3020 3279 0.036164 CATTCCTGAACCGTGTCCCA 59.964 55.000 0.00 0.00 0.00 4.37
3021 3280 0.768622 ATTCCTGAACCGTGTCCCAA 59.231 50.000 0.00 0.00 0.00 4.12
3022 3281 0.179040 TTCCTGAACCGTGTCCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
3023 3282 1.147376 CCTGAACCGTGTCCCAACA 59.853 57.895 0.00 0.00 0.00 3.33
3024 3283 0.464735 CCTGAACCGTGTCCCAACAA 60.465 55.000 0.00 0.00 37.08 2.83
3025 3284 1.384525 CTGAACCGTGTCCCAACAAA 58.615 50.000 0.00 0.00 37.08 2.83
3026 3285 1.064952 CTGAACCGTGTCCCAACAAAC 59.935 52.381 0.00 0.00 37.08 2.93
3027 3286 0.382873 GAACCGTGTCCCAACAAACC 59.617 55.000 0.00 0.00 37.08 3.27
3042 3301 2.616842 ACAAACCTTGTTGAGCTAACCG 59.383 45.455 0.00 0.00 42.22 4.44
3067 3326 6.562518 CACACCATGCATGATTTATAACACA 58.437 36.000 28.31 0.00 0.00 3.72
3069 3328 7.544915 CACACCATGCATGATTTATAACACAAA 59.455 33.333 28.31 0.00 0.00 2.83
3070 3329 8.259411 ACACCATGCATGATTTATAACACAAAT 58.741 29.630 28.31 0.00 0.00 2.32
3071 3330 9.747293 CACCATGCATGATTTATAACACAAATA 57.253 29.630 28.31 0.00 0.00 1.40
3093 3359 2.917933 ACTCACACAGCTAAAGCAACA 58.082 42.857 4.54 0.00 45.16 3.33
3099 3365 6.169800 TCACACAGCTAAAGCAACATACATA 58.830 36.000 4.54 0.00 45.16 2.29
3101 3367 5.586243 ACACAGCTAAAGCAACATACATAGG 59.414 40.000 4.54 0.00 45.16 2.57
3117 3383 9.823647 ACATACATAGGCACATTCTTATATAGC 57.176 33.333 0.00 0.00 0.00 2.97
3123 3389 3.270877 CACATTCTTATATAGCCGGCCC 58.729 50.000 26.15 0.00 0.00 5.80
3136 3402 0.821517 CCGGCCCCAAGGTTATTTTC 59.178 55.000 0.00 0.00 34.57 2.29
3138 3404 1.476488 CGGCCCCAAGGTTATTTTCAG 59.524 52.381 0.00 0.00 34.57 3.02
3148 3417 7.832187 CCCAAGGTTATTTTCAGGATACACTAA 59.168 37.037 0.00 0.00 41.41 2.24
3149 3418 8.674607 CCAAGGTTATTTTCAGGATACACTAAC 58.325 37.037 0.00 0.00 41.41 2.34
3151 3420 9.449719 AAGGTTATTTTCAGGATACACTAACAG 57.550 33.333 0.00 0.00 41.41 3.16
3157 3426 9.959721 ATTTTCAGGATACACTAACAGTACAAT 57.040 29.630 0.00 0.00 41.41 2.71
3160 3429 8.584063 TCAGGATACACTAACAGTACAATACA 57.416 34.615 0.00 0.00 41.41 2.29
3187 3457 7.105494 ACAATACTACATATTCACATTCGCG 57.895 36.000 0.00 0.00 30.54 5.87
3188 3458 6.700081 ACAATACTACATATTCACATTCGCGT 59.300 34.615 5.77 0.00 30.54 6.01
3214 3487 4.160626 GCTGAGGACAAGGAACATACTAGT 59.839 45.833 0.00 0.00 0.00 2.57
3230 3503 6.904498 CATACTAGTATGTACCTCAGCAGAC 58.096 44.000 27.86 0.00 38.42 3.51
3274 3547 3.726557 TGGATCAAGGTGCTCAATCTT 57.273 42.857 0.00 0.00 0.00 2.40
3277 3550 1.538047 TCAAGGTGCTCAATCTTGCC 58.462 50.000 0.00 0.00 38.13 4.52
3283 3556 1.135859 GTGCTCAATCTTGCCGAGTTG 60.136 52.381 0.00 0.00 0.00 3.16
3287 3560 2.143122 TCAATCTTGCCGAGTTGTGAC 58.857 47.619 0.00 0.00 0.00 3.67
3295 3568 3.414700 GAGTTGTGACCGCCGCAG 61.415 66.667 0.00 0.00 36.53 5.18
3322 3595 1.442769 TGCTTGCTTCCTTCATCGTC 58.557 50.000 0.00 0.00 0.00 4.20
3397 3670 0.733150 CGTACTGAGTGAGCGATCCA 59.267 55.000 0.00 0.00 0.00 3.41
3481 3754 9.846248 ACATTAAAATGATTGAGCTGAAACTAC 57.154 29.630 9.60 0.00 39.67 2.73
3676 3949 1.063321 CGACTGTCTCACTGATCTCCG 59.937 57.143 6.21 0.00 0.00 4.63
3706 3979 4.090210 CGTTCGCCTTCTCTTTAGACTTTC 59.910 45.833 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 74 1.745489 GGCCGTGCCTCTCGAAAAT 60.745 57.895 7.58 0.00 46.69 1.82
91 111 1.208358 CGCGAGAGACACGGTTGTA 59.792 57.895 0.00 0.00 35.47 2.41
174 198 2.350772 CGAGAGGCACGATTTTGCTTTT 60.351 45.455 0.00 0.00 42.56 2.27
305 362 3.501062 CGGTCTCCCTTAACTTTTGGAAC 59.499 47.826 0.00 0.00 0.00 3.62
363 422 6.137415 CACGTGTTTTCGGCTTTCTAAATAA 58.863 36.000 7.58 0.00 34.94 1.40
365 424 4.533222 CACGTGTTTTCGGCTTTCTAAAT 58.467 39.130 7.58 0.00 34.94 1.40
487 551 2.157085 GCAACTAGTTAACGAGCGCTTT 59.843 45.455 13.26 5.26 0.00 3.51
537 601 1.008538 GTTTGCACCTGCCAACTCG 60.009 57.895 6.92 0.00 41.68 4.18
545 609 1.657181 GCCGAAACGTTTGCACCTG 60.657 57.895 20.10 1.36 0.00 4.00
617 681 6.256975 GGGCTTTACTTCAAAACGACAAAAAT 59.743 34.615 0.00 0.00 0.00 1.82
627 691 5.340439 TTTTTCGGGGCTTTACTTCAAAA 57.660 34.783 0.00 0.00 0.00 2.44
689 753 8.319143 TCTTTTCTTAACATTTACTCCTTCCG 57.681 34.615 0.00 0.00 0.00 4.30
956 1020 1.544691 CTAGACAGTAACAGGGCACGT 59.455 52.381 0.00 0.00 0.00 4.49
958 1022 1.405661 GCCTAGACAGTAACAGGGCAC 60.406 57.143 0.00 0.00 38.16 5.01
1154 1218 2.937959 GATGGAGGCGAGGAGGGAGT 62.938 65.000 0.00 0.00 0.00 3.85
1578 1642 4.457496 ATGTCGCCGAGGCACTGG 62.457 66.667 15.03 0.00 41.55 4.00
1695 1759 4.214545 CCATTTTGCCAGTACTTGACGTAA 59.785 41.667 0.00 0.00 0.00 3.18
1716 1780 0.320374 AAGAGCGGAAATCGTGTCCA 59.680 50.000 3.38 0.00 41.72 4.02
1725 1789 1.001633 GTACCCTGTGAAGAGCGGAAA 59.998 52.381 0.00 0.00 0.00 3.13
1766 1833 1.801771 GCATTGTACTGTACCACGCAA 59.198 47.619 14.91 3.22 0.00 4.85
1773 1844 9.716507 CTTAACATAATTGGCATTGTACTGTAC 57.283 33.333 10.98 10.98 0.00 2.90
1774 1845 8.402472 GCTTAACATAATTGGCATTGTACTGTA 58.598 33.333 0.00 0.00 0.00 2.74
1775 1846 7.093988 TGCTTAACATAATTGGCATTGTACTGT 60.094 33.333 0.00 0.00 0.00 3.55
1776 1847 7.257003 TGCTTAACATAATTGGCATTGTACTG 58.743 34.615 0.00 0.00 0.00 2.74
1777 1848 7.403312 TGCTTAACATAATTGGCATTGTACT 57.597 32.000 0.00 0.00 0.00 2.73
1790 1861 7.228314 ACTCCTATAGCGATGCTTAACATAA 57.772 36.000 0.00 0.00 39.84 1.90
1807 1878 9.052365 AGAAGAAGAAGATGGTTTTACTCCTAT 57.948 33.333 0.00 0.00 0.00 2.57
1834 1905 4.160626 TCCCTCGCAAAAAGGAAAAAGAAA 59.839 37.500 0.00 0.00 35.83 2.52
1835 1906 3.702045 TCCCTCGCAAAAAGGAAAAAGAA 59.298 39.130 0.00 0.00 35.83 2.52
1836 1907 3.292460 TCCCTCGCAAAAAGGAAAAAGA 58.708 40.909 0.00 0.00 35.83 2.52
1837 1908 3.726291 TCCCTCGCAAAAAGGAAAAAG 57.274 42.857 0.00 0.00 35.83 2.27
1838 1909 3.449377 ACTTCCCTCGCAAAAAGGAAAAA 59.551 39.130 0.00 0.00 37.91 1.94
1839 1910 3.028130 ACTTCCCTCGCAAAAAGGAAAA 58.972 40.909 0.00 0.00 37.91 2.29
1843 1914 4.295870 GTTTTACTTCCCTCGCAAAAAGG 58.704 43.478 0.00 0.00 0.00 3.11
1853 1924 4.043435 AGCTGAAGATGGTTTTACTTCCCT 59.957 41.667 0.00 0.00 39.14 4.20
1880 1953 3.676646 GCAAGGATTTGTTTGTGATCTGC 59.323 43.478 0.00 0.00 36.65 4.26
1891 1964 3.068024 TGCGAAGAAAAGCAAGGATTTGT 59.932 39.130 0.00 0.00 40.78 2.83
1901 1974 0.586802 ACGGACTTGCGAAGAAAAGC 59.413 50.000 0.00 0.00 0.00 3.51
1906 1979 6.365050 GTTAAAAATAACGGACTTGCGAAGA 58.635 36.000 0.00 0.00 0.00 2.87
1910 1983 3.841872 CGGTTAAAAATAACGGACTTGCG 59.158 43.478 1.41 0.00 33.73 4.85
1911 1984 5.033326 TCGGTTAAAAATAACGGACTTGC 57.967 39.130 5.27 0.00 35.37 4.01
1917 1990 7.867591 CGAAGAAAATCGGTTAAAAATAACGG 58.132 34.615 0.00 0.00 39.12 4.44
1947 2040 7.895975 ACTCTAGGGAATGTTAAACGTTAAC 57.104 36.000 0.00 7.39 0.00 2.01
1963 2056 5.357314 TGTCTCGAACTTCATTACTCTAGGG 59.643 44.000 0.00 0.00 0.00 3.53
1964 2057 6.127980 TGTGTCTCGAACTTCATTACTCTAGG 60.128 42.308 0.00 0.00 0.00 3.02
1965 2058 6.743627 GTGTGTCTCGAACTTCATTACTCTAG 59.256 42.308 0.00 0.00 0.00 2.43
1967 2060 5.462405 GTGTGTCTCGAACTTCATTACTCT 58.538 41.667 0.00 0.00 0.00 3.24
1968 2061 4.321217 CGTGTGTCTCGAACTTCATTACTC 59.679 45.833 0.00 0.00 0.00 2.59
1969 2062 4.227538 CGTGTGTCTCGAACTTCATTACT 58.772 43.478 0.00 0.00 0.00 2.24
1970 2063 3.181543 GCGTGTGTCTCGAACTTCATTAC 60.182 47.826 0.00 0.00 0.00 1.89
1971 2064 2.984471 GCGTGTGTCTCGAACTTCATTA 59.016 45.455 0.00 0.00 0.00 1.90
1988 2081 5.220557 TGACATATTTGAAGTCATGCGTG 57.779 39.130 0.00 0.00 37.36 5.34
1991 2084 7.381948 TGTTGTTTGACATATTTGAAGTCATGC 59.618 33.333 0.00 0.00 41.42 4.06
1997 2090 7.140705 TCTGCTGTTGTTTGACATATTTGAAG 58.859 34.615 0.00 0.00 0.00 3.02
2005 2098 6.339730 TGAATTTTCTGCTGTTGTTTGACAT 58.660 32.000 0.00 0.00 0.00 3.06
2019 2117 8.847567 GCTGCGATGATTAATATGAATTTTCTG 58.152 33.333 0.00 0.00 0.00 3.02
2020 2118 8.790718 AGCTGCGATGATTAATATGAATTTTCT 58.209 29.630 0.00 0.00 0.00 2.52
2021 2119 8.961294 AGCTGCGATGATTAATATGAATTTTC 57.039 30.769 0.00 0.00 0.00 2.29
2028 2126 9.144747 ACTACTAAAGCTGCGATGATTAATATG 57.855 33.333 0.00 0.00 0.00 1.78
2031 2129 8.361139 AGTACTACTAAAGCTGCGATGATTAAT 58.639 33.333 0.00 0.00 0.00 1.40
2032 2130 7.713750 AGTACTACTAAAGCTGCGATGATTAA 58.286 34.615 0.00 0.00 0.00 1.40
2033 2131 7.273320 AGTACTACTAAAGCTGCGATGATTA 57.727 36.000 0.00 0.00 0.00 1.75
2034 2132 6.150396 AGTACTACTAAAGCTGCGATGATT 57.850 37.500 0.00 0.00 0.00 2.57
2035 2133 5.776173 AGTACTACTAAAGCTGCGATGAT 57.224 39.130 0.00 0.00 0.00 2.45
2036 2134 5.578005 AAGTACTACTAAAGCTGCGATGA 57.422 39.130 0.00 0.00 0.00 2.92
2037 2135 6.263344 TGTAAGTACTACTAAAGCTGCGATG 58.737 40.000 0.00 0.00 0.00 3.84
2038 2136 6.446781 TGTAAGTACTACTAAAGCTGCGAT 57.553 37.500 0.00 0.00 0.00 4.58
2039 2137 5.885230 TGTAAGTACTACTAAAGCTGCGA 57.115 39.130 0.00 0.00 0.00 5.10
2040 2138 6.091437 AGTTGTAAGTACTACTAAAGCTGCG 58.909 40.000 0.00 0.00 39.76 5.18
2041 2139 7.886405 AAGTTGTAAGTACTACTAAAGCTGC 57.114 36.000 0.00 0.00 40.44 5.25
2055 2153 8.188799 GGCAAGTTCTCTTTTAAAGTTGTAAGT 58.811 33.333 4.53 0.00 37.85 2.24
2056 2154 7.648112 GGGCAAGTTCTCTTTTAAAGTTGTAAG 59.352 37.037 4.53 0.00 37.85 2.34
2057 2155 7.340999 AGGGCAAGTTCTCTTTTAAAGTTGTAA 59.659 33.333 4.53 0.00 37.85 2.41
2058 2156 6.831868 AGGGCAAGTTCTCTTTTAAAGTTGTA 59.168 34.615 4.53 0.00 37.85 2.41
2059 2157 5.656859 AGGGCAAGTTCTCTTTTAAAGTTGT 59.343 36.000 4.53 0.00 37.85 3.32
2060 2158 6.149129 AGGGCAAGTTCTCTTTTAAAGTTG 57.851 37.500 4.53 3.10 38.34 3.16
2061 2159 9.011095 GTATAGGGCAAGTTCTCTTTTAAAGTT 57.989 33.333 4.53 0.00 0.00 2.66
2062 2160 7.610692 GGTATAGGGCAAGTTCTCTTTTAAAGT 59.389 37.037 4.53 0.00 0.00 2.66
2063 2161 7.829706 AGGTATAGGGCAAGTTCTCTTTTAAAG 59.170 37.037 0.00 0.00 0.00 1.85
2064 2162 7.610305 CAGGTATAGGGCAAGTTCTCTTTTAAA 59.390 37.037 0.00 0.00 0.00 1.52
2065 2163 7.037873 TCAGGTATAGGGCAAGTTCTCTTTTAA 60.038 37.037 0.00 0.00 0.00 1.52
2066 2164 6.442564 TCAGGTATAGGGCAAGTTCTCTTTTA 59.557 38.462 0.00 0.00 0.00 1.52
2067 2165 5.250774 TCAGGTATAGGGCAAGTTCTCTTTT 59.749 40.000 0.00 0.00 0.00 2.27
2068 2166 4.783227 TCAGGTATAGGGCAAGTTCTCTTT 59.217 41.667 0.00 0.00 0.00 2.52
2069 2167 4.362677 TCAGGTATAGGGCAAGTTCTCTT 58.637 43.478 0.00 0.00 0.00 2.85
2081 2179 7.242079 CGACTAAATCGTACATCAGGTATAGG 58.758 42.308 0.00 0.00 46.25 2.57
2099 2205 2.129607 GAGTTGCAACCGACGACTAAA 58.870 47.619 25.62 0.00 31.72 1.85
2109 2215 2.617274 GGTCGCCAGAGTTGCAACC 61.617 63.158 25.62 16.66 0.00 3.77
2123 2229 8.618677 TCACTAATAATAGTTGTCTAGTGGTCG 58.381 37.037 7.08 0.00 40.44 4.79
2187 2295 1.390123 CGGAATATATGCTCGTTGCCG 59.610 52.381 0.00 0.00 42.00 5.69
2317 2430 5.291128 CCACCATGTTTACGAGTAATCAGAC 59.709 44.000 11.04 2.18 30.93 3.51
2319 2432 5.416083 TCCACCATGTTTACGAGTAATCAG 58.584 41.667 11.04 3.65 30.93 2.90
2328 2441 5.182380 ACTTTACCATTCCACCATGTTTACG 59.818 40.000 0.00 0.00 0.00 3.18
2340 2455 5.310451 TCTGTACCACAACTTTACCATTCC 58.690 41.667 0.00 0.00 0.00 3.01
2342 2457 7.833285 AAATCTGTACCACAACTTTACCATT 57.167 32.000 0.00 0.00 0.00 3.16
2343 2458 8.161425 AGTAAATCTGTACCACAACTTTACCAT 58.839 33.333 13.97 2.47 36.60 3.55
2344 2459 7.511268 AGTAAATCTGTACCACAACTTTACCA 58.489 34.615 13.97 0.00 36.60 3.25
2348 2463 9.787435 TGATTAGTAAATCTGTACCACAACTTT 57.213 29.630 0.00 0.00 41.83 2.66
2349 2464 9.959721 ATGATTAGTAAATCTGTACCACAACTT 57.040 29.630 0.00 0.00 41.83 2.66
2354 2469 9.694137 GTCCTATGATTAGTAAATCTGTACCAC 57.306 37.037 0.00 0.00 41.83 4.16
2370 2519 5.513233 ACTGGATGCTTTTGTCCTATGATT 58.487 37.500 0.00 0.00 35.49 2.57
2377 2526 0.169009 GCGACTGGATGCTTTTGTCC 59.831 55.000 0.00 0.00 35.02 4.02
2380 2529 2.349886 GAGTAGCGACTGGATGCTTTTG 59.650 50.000 3.45 0.00 42.48 2.44
2382 2531 1.469940 CGAGTAGCGACTGGATGCTTT 60.470 52.381 3.45 0.00 44.57 3.51
2386 2535 1.941294 AGTACGAGTAGCGACTGGATG 59.059 52.381 15.48 0.43 44.57 3.51
2388 2537 1.066645 TCAGTACGAGTAGCGACTGGA 60.067 52.381 15.48 0.00 42.75 3.86
2389 2538 1.366679 TCAGTACGAGTAGCGACTGG 58.633 55.000 3.45 5.73 42.75 4.00
2391 2540 6.222389 AGTATAATCAGTACGAGTAGCGACT 58.778 40.000 0.00 0.00 44.57 4.18
2392 2541 6.400940 GGAGTATAATCAGTACGAGTAGCGAC 60.401 46.154 2.18 0.00 44.57 5.19
2393 2542 5.636965 GGAGTATAATCAGTACGAGTAGCGA 59.363 44.000 2.18 0.00 44.57 4.93
2395 2544 5.939296 AGGGAGTATAATCAGTACGAGTAGC 59.061 44.000 2.18 0.00 0.00 3.58
2414 2563 2.224621 TGCTTCCTTTCTTCACAGGGAG 60.225 50.000 0.00 0.00 38.72 4.30
2452 2602 5.541845 AGCAAATTAAGTCCAAAAGAAGGC 58.458 37.500 0.00 0.00 0.00 4.35
2453 2603 6.424812 CCAAGCAAATTAAGTCCAAAAGAAGG 59.575 38.462 0.00 0.00 0.00 3.46
2457 2607 7.571798 GCAATCCAAGCAAATTAAGTCCAAAAG 60.572 37.037 0.00 0.00 0.00 2.27
2461 2611 4.527816 AGCAATCCAAGCAAATTAAGTCCA 59.472 37.500 0.00 0.00 0.00 4.02
2463 2613 5.574443 GTCAGCAATCCAAGCAAATTAAGTC 59.426 40.000 0.00 0.00 0.00 3.01
2465 2615 5.472148 TGTCAGCAATCCAAGCAAATTAAG 58.528 37.500 0.00 0.00 0.00 1.85
2471 2628 2.275134 TCTGTCAGCAATCCAAGCAA 57.725 45.000 0.00 0.00 0.00 3.91
2491 2649 4.390603 CGTCCAAATTCGTCACCAGAATAA 59.609 41.667 0.00 0.00 37.34 1.40
2497 2655 0.393448 TCCGTCCAAATTCGTCACCA 59.607 50.000 0.00 0.00 0.00 4.17
2500 2658 0.668096 CGGTCCGTCCAAATTCGTCA 60.668 55.000 2.08 0.00 35.57 4.35
2512 2670 4.159135 CCTATTATTATAGCCACGGTCCGT 59.841 45.833 12.23 12.23 35.35 4.69
2513 2671 4.159135 ACCTATTATTATAGCCACGGTCCG 59.841 45.833 10.48 10.48 33.73 4.79
2533 2691 1.074775 TAGCCCGGCCAAGATACCT 60.075 57.895 5.55 0.00 0.00 3.08
2536 2694 1.764454 TGCTAGCCCGGCCAAGATA 60.764 57.895 13.29 0.00 0.00 1.98
2582 2740 5.880054 TTAGAAGACTTACATGCTTTGGC 57.120 39.130 0.00 0.00 39.26 4.52
2599 2757 7.857734 TTGCATTCCTCGACATAATTTAGAA 57.142 32.000 0.00 0.00 0.00 2.10
2613 2771 1.901833 ACCCCAACAATTGCATTCCTC 59.098 47.619 5.05 0.00 0.00 3.71
2614 2772 2.028561 ACCCCAACAATTGCATTCCT 57.971 45.000 5.05 0.00 0.00 3.36
2615 2773 2.857186 AACCCCAACAATTGCATTCC 57.143 45.000 5.05 0.00 0.00 3.01
2616 2774 4.388485 AGAAAACCCCAACAATTGCATTC 58.612 39.130 5.05 0.00 0.00 2.67
2617 2775 4.141528 TGAGAAAACCCCAACAATTGCATT 60.142 37.500 5.05 0.00 0.00 3.56
2619 2777 2.768527 TGAGAAAACCCCAACAATTGCA 59.231 40.909 5.05 0.00 0.00 4.08
2620 2778 3.467374 TGAGAAAACCCCAACAATTGC 57.533 42.857 5.05 0.00 0.00 3.56
2622 2780 3.777522 TGGTTGAGAAAACCCCAACAATT 59.222 39.130 4.86 0.00 41.22 2.32
2637 2833 3.822735 TCTCATTTCTTGGCTTGGTTGAG 59.177 43.478 0.00 0.00 0.00 3.02
2641 2837 5.104982 TGTTTTTCTCATTTCTTGGCTTGGT 60.105 36.000 0.00 0.00 0.00 3.67
2666 2897 5.354792 GCATTGCATTGGAACATTGGTTAAT 59.645 36.000 10.41 0.00 39.76 1.40
2674 2905 1.406341 GCCTGCATTGCATTGGAACAT 60.406 47.619 18.37 0.00 38.13 2.71
2676 2907 0.248289 AGCCTGCATTGCATTGGAAC 59.752 50.000 18.37 4.32 38.13 3.62
2700 2931 2.643551 CGTATGGGCAGAAACTTCCAT 58.356 47.619 0.00 0.00 42.12 3.41
2701 2932 1.339631 CCGTATGGGCAGAAACTTCCA 60.340 52.381 0.00 0.00 0.00 3.53
2702 2933 1.379527 CCGTATGGGCAGAAACTTCC 58.620 55.000 0.00 0.00 0.00 3.46
2717 2948 1.229400 GGGGATATCCTGGGCCGTA 60.229 63.158 21.18 0.00 35.95 4.02
2733 2964 3.454587 TAATGCGCCGCTACCTGGG 62.455 63.158 11.67 0.00 0.00 4.45
2738 2969 0.248907 TGTCTCTAATGCGCCGCTAC 60.249 55.000 11.67 0.00 0.00 3.58
2741 2972 1.211818 CTCTGTCTCTAATGCGCCGC 61.212 60.000 4.18 0.00 0.00 6.53
2742 2973 0.596083 CCTCTGTCTCTAATGCGCCG 60.596 60.000 4.18 0.00 0.00 6.46
2743 2974 0.461961 ACCTCTGTCTCTAATGCGCC 59.538 55.000 4.18 0.00 0.00 6.53
2744 2975 1.537135 GGACCTCTGTCTCTAATGCGC 60.537 57.143 0.00 0.00 41.47 6.09
2745 2976 1.751351 TGGACCTCTGTCTCTAATGCG 59.249 52.381 0.00 0.00 41.47 4.73
2774 3033 0.034896 ATCACGTCCTTTCGCTTGGT 59.965 50.000 0.00 0.00 0.00 3.67
2778 3037 1.673033 CCAGAATCACGTCCTTTCGCT 60.673 52.381 0.00 0.00 0.00 4.93
2779 3038 0.721718 CCAGAATCACGTCCTTTCGC 59.278 55.000 0.00 0.00 0.00 4.70
2780 3039 0.721718 GCCAGAATCACGTCCTTTCG 59.278 55.000 0.00 0.00 0.00 3.46
2781 3040 1.734465 CAGCCAGAATCACGTCCTTTC 59.266 52.381 0.00 0.00 0.00 2.62
2784 3043 1.078848 GCAGCCAGAATCACGTCCT 60.079 57.895 0.00 0.00 0.00 3.85
2786 3045 0.671781 ACTGCAGCCAGAATCACGTC 60.672 55.000 15.27 0.00 41.77 4.34
2787 3046 0.671781 GACTGCAGCCAGAATCACGT 60.672 55.000 15.27 0.00 41.77 4.49
2788 3047 1.690283 CGACTGCAGCCAGAATCACG 61.690 60.000 15.27 2.40 41.77 4.35
2789 3048 1.975363 GCGACTGCAGCCAGAATCAC 61.975 60.000 15.27 0.00 41.77 3.06
2790 3049 1.742880 GCGACTGCAGCCAGAATCA 60.743 57.895 15.27 0.00 41.77 2.57
2791 3050 2.806856 CGCGACTGCAGCCAGAATC 61.807 63.158 15.27 1.15 41.77 2.52
2799 3058 3.796443 ATGCAAGCGCGACTGCAG 61.796 61.111 30.36 13.48 42.97 4.41
2800 3059 4.092652 CATGCAAGCGCGACTGCA 62.093 61.111 29.59 29.59 42.97 4.41
2801 3060 3.792047 TCATGCAAGCGCGACTGC 61.792 61.111 21.70 21.70 42.97 4.40
2804 3063 1.225854 GAAGTCATGCAAGCGCGAC 60.226 57.895 12.10 1.67 42.97 5.19
2809 3068 0.731417 ATCAGCGAAGTCATGCAAGC 59.269 50.000 0.00 0.00 0.00 4.01
2817 3076 2.670414 CACCTTGAAGATCAGCGAAGTC 59.330 50.000 0.00 0.00 0.00 3.01
2818 3077 2.037772 ACACCTTGAAGATCAGCGAAGT 59.962 45.455 0.00 0.00 0.00 3.01
2819 3078 2.670414 GACACCTTGAAGATCAGCGAAG 59.330 50.000 0.00 0.00 0.00 3.79
2821 3080 1.895798 AGACACCTTGAAGATCAGCGA 59.104 47.619 0.00 0.00 0.00 4.93
2823 3082 5.078411 TCTAAGACACCTTGAAGATCAGC 57.922 43.478 0.00 0.00 33.94 4.26
2836 3095 2.072298 CAGGCAGTGCTTCTAAGACAC 58.928 52.381 16.11 8.36 35.05 3.67
2842 3101 1.554617 TGCATACAGGCAGTGCTTCTA 59.445 47.619 16.11 0.00 39.25 2.10
2856 3115 3.923017 AAAAACTGAGGCACTGCATAC 57.077 42.857 2.82 0.00 41.55 2.39
2881 3140 8.095792 TCCTCTGAGAATAATACTACTCCGTAG 58.904 40.741 6.17 0.00 41.43 3.51
2882 3141 7.971201 TCCTCTGAGAATAATACTACTCCGTA 58.029 38.462 6.17 0.00 0.00 4.02
2883 3142 6.839454 TCCTCTGAGAATAATACTACTCCGT 58.161 40.000 6.17 0.00 0.00 4.69
2884 3143 7.747155 TTCCTCTGAGAATAATACTACTCCG 57.253 40.000 6.17 0.00 0.00 4.63
2885 3144 8.581578 CCTTTCCTCTGAGAATAATACTACTCC 58.418 40.741 6.17 0.00 0.00 3.85
2886 3145 8.085909 GCCTTTCCTCTGAGAATAATACTACTC 58.914 40.741 6.17 0.00 0.00 2.59
2887 3146 7.787424 AGCCTTTCCTCTGAGAATAATACTACT 59.213 37.037 6.17 0.00 0.00 2.57
2888 3147 7.870445 CAGCCTTTCCTCTGAGAATAATACTAC 59.130 40.741 6.17 0.00 32.26 2.73
2889 3148 7.472100 GCAGCCTTTCCTCTGAGAATAATACTA 60.472 40.741 6.17 0.00 32.26 1.82
2890 3149 6.687647 GCAGCCTTTCCTCTGAGAATAATACT 60.688 42.308 6.17 0.00 32.26 2.12
2891 3150 5.468409 GCAGCCTTTCCTCTGAGAATAATAC 59.532 44.000 6.17 0.00 32.26 1.89
2893 3152 4.165758 AGCAGCCTTTCCTCTGAGAATAAT 59.834 41.667 6.17 0.00 32.26 1.28
2897 3156 1.277557 GAGCAGCCTTTCCTCTGAGAA 59.722 52.381 6.17 0.00 32.26 2.87
2899 3158 0.903942 AGAGCAGCCTTTCCTCTGAG 59.096 55.000 0.00 0.00 34.82 3.35
2901 3160 3.156157 CAGAGCAGCCTTTCCTCTG 57.844 57.895 2.89 2.89 44.40 3.35
2929 3188 9.004717 GCAGACCTTTCTTTCTTATCTTTTACT 57.995 33.333 0.00 0.00 0.00 2.24
2930 3189 9.004717 AGCAGACCTTTCTTTCTTATCTTTTAC 57.995 33.333 0.00 0.00 0.00 2.01
2931 3190 9.220767 GAGCAGACCTTTCTTTCTTATCTTTTA 57.779 33.333 0.00 0.00 0.00 1.52
2932 3191 7.721399 TGAGCAGACCTTTCTTTCTTATCTTTT 59.279 33.333 0.00 0.00 0.00 2.27
2933 3192 7.227156 TGAGCAGACCTTTCTTTCTTATCTTT 58.773 34.615 0.00 0.00 0.00 2.52
2938 3197 6.114187 TCATGAGCAGACCTTTCTTTCTTA 57.886 37.500 0.00 0.00 0.00 2.10
2957 3216 3.997681 TGCAACCAAATGATGCTTTCATG 59.002 39.130 10.87 0.00 44.51 3.07
2958 3217 9.675079 TGCTATGCAACCAAATGATGCTTTCAT 62.675 37.037 0.00 0.00 40.44 2.57
2963 3222 2.761767 TGCTATGCAACCAAATGATGCT 59.238 40.909 0.00 2.59 40.66 3.79
2968 3227 3.936902 GCAATGCTATGCAACCAAATG 57.063 42.857 0.00 0.00 43.62 2.32
2986 3245 3.016064 AGGAATGTCCTTGCAAGTTGCA 61.016 45.455 26.36 26.36 46.91 4.08
2987 3246 1.615392 AGGAATGTCCTTGCAAGTTGC 59.385 47.619 24.35 21.17 46.91 4.17
2988 3247 2.886523 TCAGGAATGTCCTTGCAAGTTG 59.113 45.455 24.35 10.80 46.91 3.16
2989 3248 3.228188 TCAGGAATGTCCTTGCAAGTT 57.772 42.857 24.35 12.38 46.91 2.66
2990 3249 2.887152 GTTCAGGAATGTCCTTGCAAGT 59.113 45.455 24.35 5.94 46.91 3.16
2991 3250 2.229784 GGTTCAGGAATGTCCTTGCAAG 59.770 50.000 19.93 19.93 46.91 4.01
2992 3251 2.238521 GGTTCAGGAATGTCCTTGCAA 58.761 47.619 0.00 0.00 46.91 4.08
2993 3252 1.881925 CGGTTCAGGAATGTCCTTGCA 60.882 52.381 0.00 0.00 46.91 4.08
2994 3253 0.804989 CGGTTCAGGAATGTCCTTGC 59.195 55.000 0.00 0.00 46.91 4.01
2995 3254 1.806542 CACGGTTCAGGAATGTCCTTG 59.193 52.381 0.00 0.00 46.91 3.61
2996 3255 1.420138 ACACGGTTCAGGAATGTCCTT 59.580 47.619 0.00 0.00 46.91 3.36
2998 3257 1.439679 GACACGGTTCAGGAATGTCC 58.560 55.000 3.87 0.00 34.83 4.02
2999 3258 1.439679 GGACACGGTTCAGGAATGTC 58.560 55.000 5.94 5.94 39.16 3.06
3000 3259 0.036306 GGGACACGGTTCAGGAATGT 59.964 55.000 0.00 0.00 0.00 2.71
3001 3260 0.036164 TGGGACACGGTTCAGGAATG 59.964 55.000 0.00 0.00 0.00 2.67
3002 3261 0.768622 TTGGGACACGGTTCAGGAAT 59.231 50.000 0.00 0.00 39.29 3.01
3003 3262 0.179040 GTTGGGACACGGTTCAGGAA 60.179 55.000 0.00 0.00 39.29 3.36
3004 3263 1.338890 TGTTGGGACACGGTTCAGGA 61.339 55.000 0.00 0.00 39.29 3.86
3005 3264 0.464735 TTGTTGGGACACGGTTCAGG 60.465 55.000 0.00 0.00 39.29 3.86
3006 3265 1.064952 GTTTGTTGGGACACGGTTCAG 59.935 52.381 0.00 0.00 39.29 3.02
3007 3266 1.096416 GTTTGTTGGGACACGGTTCA 58.904 50.000 0.00 0.00 39.29 3.18
3008 3267 0.382873 GGTTTGTTGGGACACGGTTC 59.617 55.000 0.00 0.00 39.29 3.62
3009 3268 0.033894 AGGTTTGTTGGGACACGGTT 60.034 50.000 0.00 0.00 39.29 4.44
3010 3269 0.033894 AAGGTTTGTTGGGACACGGT 60.034 50.000 0.00 0.00 39.29 4.83
3011 3270 0.383949 CAAGGTTTGTTGGGACACGG 59.616 55.000 0.00 0.00 39.29 4.94
3012 3271 1.099689 ACAAGGTTTGTTGGGACACG 58.900 50.000 0.00 0.00 42.22 4.49
3021 3280 5.093296 GCGGTTAGCTCAACAAGGTTTGT 62.093 47.826 0.00 0.00 44.31 2.83
3022 3281 2.604614 GCGGTTAGCTCAACAAGGTTTG 60.605 50.000 0.00 0.00 44.04 2.93
3023 3282 1.607148 GCGGTTAGCTCAACAAGGTTT 59.393 47.619 0.00 0.00 44.04 3.27
3024 3283 1.235724 GCGGTTAGCTCAACAAGGTT 58.764 50.000 0.00 0.00 44.04 3.50
3025 3284 2.928416 GCGGTTAGCTCAACAAGGT 58.072 52.632 0.00 0.00 44.04 3.50
3026 3285 2.145037 TGTGCGGTTAGCTCAACAAGG 61.145 52.381 0.00 0.00 45.10 3.61
3027 3286 1.225855 TGTGCGGTTAGCTCAACAAG 58.774 50.000 0.00 0.00 45.10 3.16
3063 3322 7.148407 GCTTTAGCTGTGTGAGTATATTTGTGT 60.148 37.037 0.00 0.00 38.21 3.72
3064 3323 7.148423 TGCTTTAGCTGTGTGAGTATATTTGTG 60.148 37.037 0.00 0.00 42.66 3.33
3067 3326 7.390440 TGTTGCTTTAGCTGTGTGAGTATATTT 59.610 33.333 0.00 0.00 42.66 1.40
3069 3328 6.406370 TGTTGCTTTAGCTGTGTGAGTATAT 58.594 36.000 0.00 0.00 42.66 0.86
3070 3329 5.789521 TGTTGCTTTAGCTGTGTGAGTATA 58.210 37.500 0.00 0.00 42.66 1.47
3071 3330 4.641396 TGTTGCTTTAGCTGTGTGAGTAT 58.359 39.130 0.00 0.00 42.66 2.12
3072 3331 4.066646 TGTTGCTTTAGCTGTGTGAGTA 57.933 40.909 0.00 0.00 42.66 2.59
3073 3332 2.917933 TGTTGCTTTAGCTGTGTGAGT 58.082 42.857 0.00 0.00 42.66 3.41
3074 3333 4.452114 TGTATGTTGCTTTAGCTGTGTGAG 59.548 41.667 0.00 0.00 42.66 3.51
3093 3359 8.144478 CGGCTATATAAGAATGTGCCTATGTAT 58.856 37.037 0.00 0.00 37.01 2.29
3099 3365 3.619979 GCCGGCTATATAAGAATGTGCCT 60.620 47.826 22.15 0.00 37.01 4.75
3101 3367 2.678336 GGCCGGCTATATAAGAATGTGC 59.322 50.000 28.56 0.00 0.00 4.57
3117 3383 0.821517 GAAAATAACCTTGGGGCCGG 59.178 55.000 0.00 0.00 35.63 6.13
3123 3389 8.674607 GTTAGTGTATCCTGAAAATAACCTTGG 58.325 37.037 0.00 0.00 0.00 3.61
3136 3402 9.817809 ATTGTATTGTACTGTTAGTGTATCCTG 57.182 33.333 0.00 0.00 0.00 3.86
3183 3453 0.109272 CTTGTCCTCAGCTTACGCGA 60.109 55.000 15.93 0.00 42.32 5.87
3184 3454 1.078759 CCTTGTCCTCAGCTTACGCG 61.079 60.000 3.53 3.53 42.32 6.01
3185 3455 0.246635 TCCTTGTCCTCAGCTTACGC 59.753 55.000 0.00 0.00 0.00 4.42
3186 3456 2.288825 TGTTCCTTGTCCTCAGCTTACG 60.289 50.000 0.00 0.00 0.00 3.18
3187 3457 3.402628 TGTTCCTTGTCCTCAGCTTAC 57.597 47.619 0.00 0.00 0.00 2.34
3188 3458 4.777896 AGTATGTTCCTTGTCCTCAGCTTA 59.222 41.667 0.00 0.00 0.00 3.09
3193 3463 7.348080 CATACTAGTATGTTCCTTGTCCTCA 57.652 40.000 27.86 0.00 38.42 3.86
3229 3502 0.174389 ACAGCGCTTGATCGATCAGT 59.826 50.000 25.95 17.17 38.19 3.41
3230 3503 1.783711 GTACAGCGCTTGATCGATCAG 59.216 52.381 25.95 20.32 38.19 2.90
3233 3506 0.249489 GGGTACAGCGCTTGATCGAT 60.249 55.000 7.50 0.00 0.00 3.59
3235 3508 0.460284 AAGGGTACAGCGCTTGATCG 60.460 55.000 7.50 0.00 46.69 3.69
3269 3542 1.523758 GGTCACAACTCGGCAAGATT 58.476 50.000 0.00 0.00 0.00 2.40
3274 3547 4.980805 GGCGGTCACAACTCGGCA 62.981 66.667 0.00 0.00 41.18 5.69
3283 3556 2.125269 AATACCTGCGGCGGTCAC 60.125 61.111 17.39 0.00 38.49 3.67
3287 3560 2.896801 GCATCAATACCTGCGGCGG 61.897 63.158 9.78 0.65 0.00 6.13
3295 3568 3.696051 TGAAGGAAGCAAGCATCAATACC 59.304 43.478 0.00 0.00 0.00 2.73
3297 3570 4.274214 CGATGAAGGAAGCAAGCATCAATA 59.726 41.667 0.00 0.00 36.13 1.90
3299 3572 2.421073 CGATGAAGGAAGCAAGCATCAA 59.579 45.455 0.00 0.00 36.13 2.57
3300 3573 2.011947 CGATGAAGGAAGCAAGCATCA 58.988 47.619 0.00 0.00 36.13 3.07
3322 3595 0.667993 ACAATGGTGTTTCTGGCACG 59.332 50.000 0.00 0.00 37.70 5.34
3397 3670 3.265791 GCGGATCTTTGAGTCTCATTGT 58.734 45.455 2.68 0.00 0.00 2.71
3467 3740 1.070134 ACCTGCGTAGTTTCAGCTCAA 59.930 47.619 0.00 0.00 0.00 3.02
3676 3949 3.196613 AGAAGGCGAACGTTCTGAC 57.803 52.632 24.80 19.68 46.46 3.51
3706 3979 3.740631 TCAGTATGAGCTGCTACATGG 57.259 47.619 18.52 11.31 42.56 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.