Multiple sequence alignment - TraesCS6D01G220300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G220300 chr6D 100.000 6476 0 0 1 6476 310406232 310399757 0.000000e+00 11923.0
1 TraesCS6D01G220300 chr6D 90.974 1263 93 17 1773 3015 129739469 129738208 0.000000e+00 1700.0
2 TraesCS6D01G220300 chr6D 94.962 933 44 3 2086 3017 472764800 472765730 0.000000e+00 1459.0
3 TraesCS6D01G220300 chr6D 94.456 938 48 4 2086 3021 224800730 224801665 0.000000e+00 1441.0
4 TraesCS6D01G220300 chr6D 93.846 65 4 0 4680 4744 468105475 468105539 1.490000e-16 99.0
5 TraesCS6D01G220300 chr6D 97.917 48 1 0 5441 5488 2956560 2956607 4.160000e-12 84.2
6 TraesCS6D01G220300 chr6D 97.917 48 1 0 5441 5488 20553665 20553712 4.160000e-12 84.2
7 TraesCS6D01G220300 chr6D 97.872 47 1 0 5442 5488 24933429 24933475 1.500000e-11 82.4
8 TraesCS6D01G220300 chr6D 100.000 44 0 0 5445 5488 114156706 114156749 1.500000e-11 82.4
9 TraesCS6D01G220300 chr6D 100.000 44 0 0 5445 5488 380136980 380137023 1.500000e-11 82.4
10 TraesCS6D01G220300 chr6D 97.917 48 0 1 5442 5488 427344943 427344896 1.500000e-11 82.4
11 TraesCS6D01G220300 chr6D 92.593 54 4 0 5442 5495 7865912 7865965 1.940000e-10 78.7
12 TraesCS6D01G220300 chr6D 93.023 43 1 2 6339 6380 342467246 342467205 1.950000e-05 62.1
13 TraesCS6D01G220300 chr6D 92.308 39 3 0 6339 6377 93450673 93450711 1.000000e-03 56.5
14 TraesCS6D01G220300 chr6B 96.957 1479 29 5 3443 4920 478479071 478477608 0.000000e+00 2468.0
15 TraesCS6D01G220300 chr6B 95.683 996 35 4 4906 5899 478475501 478474512 0.000000e+00 1594.0
16 TraesCS6D01G220300 chr6B 83.439 1099 73 40 713 1747 478480621 478479568 0.000000e+00 920.0
17 TraesCS6D01G220300 chr6B 95.592 431 19 0 3017 3447 478479580 478479150 0.000000e+00 691.0
18 TraesCS6D01G220300 chr6B 86.218 624 32 20 5895 6475 478470798 478470186 1.530000e-175 627.0
19 TraesCS6D01G220300 chr6B 91.429 280 21 3 1779 2055 7122284 7122005 1.320000e-101 381.0
20 TraesCS6D01G220300 chr6B 94.643 56 2 1 5444 5499 503543959 503544013 1.160000e-12 86.1
21 TraesCS6D01G220300 chr6A 93.863 1597 65 15 3017 4587 446786557 446784968 0.000000e+00 2375.0
22 TraesCS6D01G220300 chr6A 93.433 868 49 6 4585 5447 446784626 446783762 0.000000e+00 1280.0
23 TraesCS6D01G220300 chr6A 84.334 1066 66 37 713 1747 446787540 446786545 0.000000e+00 950.0
24 TraesCS6D01G220300 chr6A 93.395 651 13 3 1 622 149870893 149871542 0.000000e+00 937.0
25 TraesCS6D01G220300 chr6A 88.770 748 36 14 5775 6475 446783270 446782524 0.000000e+00 872.0
26 TraesCS6D01G220300 chr6A 85.786 401 48 9 1771 2164 493720712 493720314 9.970000e-118 435.0
27 TraesCS6D01G220300 chr6A 93.511 262 8 5 5523 5784 446783764 446783512 1.320000e-101 381.0
28 TraesCS6D01G220300 chr6A 92.157 102 7 1 620 720 593670548 593670649 6.770000e-30 143.0
29 TraesCS6D01G220300 chr6A 93.220 59 3 1 5444 5502 457387205 457387148 1.160000e-12 86.1
30 TraesCS6D01G220300 chr6A 93.333 45 2 1 6334 6377 140604164 140604120 1.510000e-06 65.8
31 TraesCS6D01G220300 chr6A 88.889 45 5 0 6336 6380 57041860 57041904 1.000000e-03 56.5
32 TraesCS6D01G220300 chr2D 97.783 1218 17 4 1807 3014 471991838 471990621 0.000000e+00 2109.0
33 TraesCS6D01G220300 chr2D 96.290 1132 32 4 1746 2867 11036130 11037261 0.000000e+00 1868.0
34 TraesCS6D01G220300 chr2D 99.010 101 1 0 620 720 220705089 220704989 1.430000e-41 182.0
35 TraesCS6D01G220300 chr2D 91.304 46 4 0 6340 6385 44481335 44481290 5.420000e-06 63.9
36 TraesCS6D01G220300 chr5D 91.469 1266 82 12 1773 3014 420375347 420376610 0.000000e+00 1735.0
37 TraesCS6D01G220300 chr5D 98.667 75 1 0 620 694 25458554 25458480 4.070000e-27 134.0
38 TraesCS6D01G220300 chr5D 91.525 59 3 2 5429 5486 220682191 220682248 5.380000e-11 80.5
39 TraesCS6D01G220300 chr5D 93.182 44 2 1 6339 6382 114214608 114214650 5.420000e-06 63.9
40 TraesCS6D01G220300 chr5D 100.000 29 0 0 6352 6380 421173839 421173811 3.000000e-03 54.7
41 TraesCS6D01G220300 chr3D 90.439 1276 88 18 1771 3017 552629142 552627872 0.000000e+00 1668.0
42 TraesCS6D01G220300 chr3D 90.110 1274 82 12 1773 3015 23171284 23170024 0.000000e+00 1633.0
43 TraesCS6D01G220300 chr3D 92.308 65 5 0 4680 4744 55115221 55115157 6.910000e-15 93.5
44 TraesCS6D01G220300 chr3D 98.077 52 1 0 5444 5495 574243207 574243258 2.490000e-14 91.6
45 TraesCS6D01G220300 chr3D 92.500 40 3 0 6343 6382 603420935 603420974 2.520000e-04 58.4
46 TraesCS6D01G220300 chr1D 90.829 1254 88 19 1779 3014 288088144 288086900 0.000000e+00 1664.0
47 TraesCS6D01G220300 chr1D 90.909 286 22 3 1773 2055 468047785 468047501 1.320000e-101 381.0
48 TraesCS6D01G220300 chr1D 98.667 75 1 0 620 694 11350689 11350763 4.070000e-27 134.0
49 TraesCS6D01G220300 chr1D 96.154 52 1 1 5438 5488 42391711 42391762 4.160000e-12 84.2
50 TraesCS6D01G220300 chr1D 100.000 44 0 0 5445 5488 380609615 380609572 1.500000e-11 82.4
51 TraesCS6D01G220300 chr4B 90.955 1183 89 13 1846 3017 655173619 655172444 0.000000e+00 1594.0
52 TraesCS6D01G220300 chr4B 93.443 61 2 2 5438 5497 42939394 42939335 8.940000e-14 89.8
53 TraesCS6D01G220300 chr4B 93.182 44 3 0 6339 6382 29662552 29662595 1.510000e-06 65.8
54 TraesCS6D01G220300 chr4D 88.854 1283 97 20 1780 3017 488738159 488736878 0.000000e+00 1554.0
55 TraesCS6D01G220300 chr4D 88.540 1274 108 19 1776 3017 52212396 52213663 0.000000e+00 1528.0
56 TraesCS6D01G220300 chr4D 94.754 934 47 2 2086 3017 413038121 413039054 0.000000e+00 1452.0
57 TraesCS6D01G220300 chr4D 94.444 54 3 0 5435 5488 23320543 23320490 4.160000e-12 84.2
58 TraesCS6D01G220300 chr4D 96.000 50 2 0 5444 5493 494787195 494787244 1.500000e-11 82.4
59 TraesCS6D01G220300 chr4D 91.304 46 4 0 6339 6384 303324395 303324350 5.420000e-06 63.9
60 TraesCS6D01G220300 chr4D 100.000 29 0 0 6352 6380 60134691 60134663 3.000000e-03 54.7
61 TraesCS6D01G220300 chr5B 94.105 933 50 3 2086 3016 174869870 174870799 0.000000e+00 1413.0
62 TraesCS6D01G220300 chr5B 90.667 75 7 0 620 694 15049932 15050006 4.130000e-17 100.0
63 TraesCS6D01G220300 chr5B 93.182 44 3 0 6339 6382 474608190 474608147 1.510000e-06 65.8
64 TraesCS6D01G220300 chr7A 97.753 534 12 0 1 534 677816900 677816367 0.000000e+00 920.0
65 TraesCS6D01G220300 chr7B 91.786 280 20 3 1779 2055 254065598 254065319 2.830000e-103 387.0
66 TraesCS6D01G220300 chr7B 94.737 57 2 1 5433 5488 145374779 145374835 3.220000e-13 87.9
67 TraesCS6D01G220300 chr7B 85.227 88 10 3 620 706 277646192 277646107 3.220000e-13 87.9
68 TraesCS6D01G220300 chr2A 82.289 463 53 18 3486 3929 577499194 577498742 2.200000e-99 374.0
69 TraesCS6D01G220300 chr2A 91.195 159 12 2 4588 4745 577497767 577497610 1.410000e-51 215.0
70 TraesCS6D01G220300 chr2A 79.323 266 26 14 267 529 547802699 547802460 6.720000e-35 159.0
71 TraesCS6D01G220300 chr3B 92.708 96 7 0 620 715 672532509 672532604 8.760000e-29 139.0
72 TraesCS6D01G220300 chr3B 92.537 67 5 0 4680 4746 71212773 71212839 5.340000e-16 97.1
73 TraesCS6D01G220300 chr3B 86.567 67 6 2 639 703 74883616 74883551 3.240000e-08 71.3
74 TraesCS6D01G220300 chr3A 91.089 101 9 0 620 720 34590269 34590169 3.150000e-28 137.0
75 TraesCS6D01G220300 chr3A 90.769 65 6 0 4680 4744 741233498 741233562 3.220000e-13 87.9
76 TraesCS6D01G220300 chr3A 95.122 41 2 0 6342 6382 150070751 150070711 1.510000e-06 65.8
77 TraesCS6D01G220300 chr7D 98.667 75 1 0 620 694 7872026 7871952 4.070000e-27 134.0
78 TraesCS6D01G220300 chr7D 97.368 38 1 0 6340 6377 590218604 590218641 1.510000e-06 65.8
79 TraesCS6D01G220300 chr4A 93.846 65 4 0 4680 4744 714211500 714211436 1.490000e-16 99.0
80 TraesCS6D01G220300 chr4A 94.444 54 3 0 5435 5488 938149 938202 4.160000e-12 84.2
81 TraesCS6D01G220300 chr4A 97.674 43 1 0 6339 6381 731473558 731473600 2.500000e-09 75.0
82 TraesCS6D01G220300 chr1A 92.308 65 5 0 4680 4744 519474803 519474739 6.910000e-15 93.5
83 TraesCS6D01G220300 chr1A 96.154 52 0 2 5436 5486 533694070 533694020 4.160000e-12 84.2
84 TraesCS6D01G220300 chr1A 94.118 51 1 2 5438 5487 157827345 157827296 6.960000e-10 76.8
85 TraesCS6D01G220300 chr1A 95.455 44 1 1 6334 6377 126545432 126545390 1.170000e-07 69.4
86 TraesCS6D01G220300 chrUn 98.077 52 1 0 5444 5495 41223909 41223858 2.490000e-14 91.6
87 TraesCS6D01G220300 chrUn 98.077 52 1 0 5444 5495 380168717 380168666 2.490000e-14 91.6
88 TraesCS6D01G220300 chrUn 98.077 52 1 0 5444 5495 442634267 442634216 2.490000e-14 91.6
89 TraesCS6D01G220300 chrUn 100.000 41 0 0 5445 5485 17053358 17053318 6.960000e-10 76.8
90 TraesCS6D01G220300 chrUn 97.778 45 0 1 5444 5487 23744112 23744068 6.960000e-10 76.8
91 TraesCS6D01G220300 chrUn 100.000 41 0 0 5445 5485 29813967 29814007 6.960000e-10 76.8
92 TraesCS6D01G220300 chrUn 100.000 41 0 0 5445 5485 346184017 346183977 6.960000e-10 76.8
93 TraesCS6D01G220300 chrUn 100.000 41 0 0 5445 5485 429713748 429713788 6.960000e-10 76.8
94 TraesCS6D01G220300 chrUn 93.878 49 3 0 5439 5487 29814057 29814009 2.500000e-09 75.0
95 TraesCS6D01G220300 chrUn 90.741 54 4 1 5436 5488 77893557 77893504 3.240000e-08 71.3
96 TraesCS6D01G220300 chrUn 92.157 51 3 1 5438 5487 284001406 284001356 3.240000e-08 71.3
97 TraesCS6D01G220300 chrUn 95.556 45 1 1 5441 5485 315281813 315281770 3.240000e-08 71.3
98 TraesCS6D01G220300 chrUn 93.750 48 2 1 5438 5485 327316927 327316973 3.240000e-08 71.3
99 TraesCS6D01G220300 chr1B 92.982 57 3 1 5431 5487 406341859 406341804 1.500000e-11 82.4
100 TraesCS6D01G220300 chr1B 85.333 75 10 1 6385 6458 478061520 478061446 6.960000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G220300 chr6D 310399757 310406232 6475 True 11923.0 11923 100.0000 1 6476 1 chr6D.!!$R2 6475
1 TraesCS6D01G220300 chr6D 129738208 129739469 1261 True 1700.0 1700 90.9740 1773 3015 1 chr6D.!!$R1 1242
2 TraesCS6D01G220300 chr6D 472764800 472765730 930 False 1459.0 1459 94.9620 2086 3017 1 chr6D.!!$F10 931
3 TraesCS6D01G220300 chr6D 224800730 224801665 935 False 1441.0 1441 94.4560 2086 3021 1 chr6D.!!$F7 935
4 TraesCS6D01G220300 chr6B 478470186 478480621 10435 True 1260.0 2468 91.5778 713 6475 5 chr6B.!!$R2 5762
5 TraesCS6D01G220300 chr6A 446782524 446787540 5016 True 1171.6 2375 90.7822 713 6475 5 chr6A.!!$R4 5762
6 TraesCS6D01G220300 chr6A 149870893 149871542 649 False 937.0 937 93.3950 1 622 1 chr6A.!!$F2 621
7 TraesCS6D01G220300 chr2D 471990621 471991838 1217 True 2109.0 2109 97.7830 1807 3014 1 chr2D.!!$R3 1207
8 TraesCS6D01G220300 chr2D 11036130 11037261 1131 False 1868.0 1868 96.2900 1746 2867 1 chr2D.!!$F1 1121
9 TraesCS6D01G220300 chr5D 420375347 420376610 1263 False 1735.0 1735 91.4690 1773 3014 1 chr5D.!!$F3 1241
10 TraesCS6D01G220300 chr3D 552627872 552629142 1270 True 1668.0 1668 90.4390 1771 3017 1 chr3D.!!$R3 1246
11 TraesCS6D01G220300 chr3D 23170024 23171284 1260 True 1633.0 1633 90.1100 1773 3015 1 chr3D.!!$R1 1242
12 TraesCS6D01G220300 chr1D 288086900 288088144 1244 True 1664.0 1664 90.8290 1779 3014 1 chr1D.!!$R1 1235
13 TraesCS6D01G220300 chr4B 655172444 655173619 1175 True 1594.0 1594 90.9550 1846 3017 1 chr4B.!!$R2 1171
14 TraesCS6D01G220300 chr4D 488736878 488738159 1281 True 1554.0 1554 88.8540 1780 3017 1 chr4D.!!$R4 1237
15 TraesCS6D01G220300 chr4D 52212396 52213663 1267 False 1528.0 1528 88.5400 1776 3017 1 chr4D.!!$F1 1241
16 TraesCS6D01G220300 chr4D 413038121 413039054 933 False 1452.0 1452 94.7540 2086 3017 1 chr4D.!!$F2 931
17 TraesCS6D01G220300 chr5B 174869870 174870799 929 False 1413.0 1413 94.1050 2086 3016 1 chr5B.!!$F2 930
18 TraesCS6D01G220300 chr7A 677816367 677816900 533 True 920.0 920 97.7530 1 534 1 chr7A.!!$R1 533
19 TraesCS6D01G220300 chr2A 577497610 577499194 1584 True 294.5 374 86.7420 3486 4745 2 chr2A.!!$R2 1259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 899 0.320421 CGCTCCGTTTCTTCCCTTCA 60.320 55.000 0.00 0.0 0.00 3.02 F
1044 1087 0.110486 GGCTCCTGTTTCCCTCACAA 59.890 55.000 0.00 0.0 0.00 3.33 F
1306 1381 0.526662 CCTGTACGTTCTCTCGCCTT 59.473 55.000 0.00 0.0 0.00 4.35 F
1397 1472 1.399089 CGATGGGTTTCCGCGTAAAAT 59.601 47.619 4.92 0.0 35.24 1.82 F
2919 3075 3.146066 GGCGGATTCAGGCATATTGTTA 58.854 45.455 5.51 0.0 0.00 2.41 F
3173 3330 1.775039 CGCCGCGATCCACATTTGAT 61.775 55.000 8.23 0.0 0.00 2.57 F
4017 4370 3.611970 GTGACTACTGCTAGAGAGGACA 58.388 50.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1846 3.964688 TCGGTACCATCTGACCATATTGT 59.035 43.478 13.54 0.00 35.26 2.71 R
3042 3199 6.354130 AGTCACTACCACAGTACATTTTTGT 58.646 36.000 0.00 0.00 34.98 2.83 R
3155 3312 0.317269 CATCAAATGTGGATCGCGGC 60.317 55.000 6.13 0.00 0.00 6.53 R
3173 3330 2.163010 GTCCATCGACTTACCGAGAACA 59.837 50.000 0.00 0.00 42.21 3.18 R
4331 4868 1.037493 GTGGGGTTGGAACTTGGAAC 58.963 55.000 0.00 0.00 0.00 3.62 R
4809 5719 1.864565 AAGCGCAAATCCAAAACCAC 58.135 45.000 11.47 0.00 0.00 4.16 R
5809 9096 0.179187 ACGCGACAGATGAAGTCTCG 60.179 55.000 15.93 4.44 46.26 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 230 2.029739 CACCGCGACCACCATATATACA 60.030 50.000 8.23 0.00 0.00 2.29
377 380 1.090052 GCCAACACCGAGCAGTATCC 61.090 60.000 0.00 0.00 0.00 2.59
426 429 0.733909 GACCTCCCGTTAACGTTCGG 60.734 60.000 25.15 21.62 45.42 4.30
541 571 6.349860 GGGAAAAGTAAAATTACATCGGTGCT 60.350 38.462 0.00 0.00 36.12 4.40
561 591 6.038356 GTGCTAGTAGAAATTTACAGCGGTA 58.962 40.000 0.00 0.00 33.90 4.02
622 652 1.068083 CGATCGACCAGGGTGATGG 59.932 63.158 10.26 0.00 46.47 3.51
623 653 1.391933 CGATCGACCAGGGTGATGGA 61.392 60.000 10.26 0.00 43.57 3.41
624 654 0.830648 GATCGACCAGGGTGATGGAA 59.169 55.000 0.00 0.00 43.57 3.53
625 655 1.209504 GATCGACCAGGGTGATGGAAA 59.790 52.381 0.00 0.00 43.57 3.13
626 656 1.060729 TCGACCAGGGTGATGGAAAA 58.939 50.000 0.00 0.00 43.57 2.29
627 657 1.165270 CGACCAGGGTGATGGAAAAC 58.835 55.000 0.00 0.00 43.57 2.43
628 658 1.271379 CGACCAGGGTGATGGAAAACT 60.271 52.381 0.00 0.00 43.57 2.66
629 659 2.027561 CGACCAGGGTGATGGAAAACTA 60.028 50.000 0.00 0.00 43.57 2.24
630 660 3.370527 CGACCAGGGTGATGGAAAACTAT 60.371 47.826 0.00 0.00 43.57 2.12
631 661 4.600062 GACCAGGGTGATGGAAAACTATT 58.400 43.478 0.00 0.00 43.57 1.73
632 662 5.628200 CGACCAGGGTGATGGAAAACTATTA 60.628 44.000 0.00 0.00 43.57 0.98
633 663 6.341408 ACCAGGGTGATGGAAAACTATTAT 57.659 37.500 0.00 0.00 43.57 1.28
634 664 6.741724 ACCAGGGTGATGGAAAACTATTATT 58.258 36.000 0.00 0.00 43.57 1.40
635 665 7.189087 ACCAGGGTGATGGAAAACTATTATTT 58.811 34.615 0.00 0.00 43.57 1.40
636 666 7.342026 ACCAGGGTGATGGAAAACTATTATTTC 59.658 37.037 0.00 0.00 43.57 2.17
637 667 7.341769 CCAGGGTGATGGAAAACTATTATTTCA 59.658 37.037 0.00 0.00 43.57 2.69
638 668 8.917088 CAGGGTGATGGAAAACTATTATTTCAT 58.083 33.333 0.00 0.00 38.29 2.57
639 669 8.917088 AGGGTGATGGAAAACTATTATTTCATG 58.083 33.333 0.00 0.00 38.29 3.07
640 670 8.912988 GGGTGATGGAAAACTATTATTTCATGA 58.087 33.333 0.00 0.00 38.29 3.07
654 684 8.915871 ATTATTTCATGAATTATACGCCATGC 57.084 30.769 9.40 0.00 37.06 4.06
655 685 5.764487 TTTCATGAATTATACGCCATGCA 57.236 34.783 9.40 0.00 37.06 3.96
656 686 4.747540 TCATGAATTATACGCCATGCAC 57.252 40.909 0.00 0.00 37.06 4.57
657 687 4.388485 TCATGAATTATACGCCATGCACT 58.612 39.130 0.00 0.00 37.06 4.40
658 688 5.546526 TCATGAATTATACGCCATGCACTA 58.453 37.500 0.00 0.00 37.06 2.74
659 689 5.994668 TCATGAATTATACGCCATGCACTAA 59.005 36.000 0.00 0.00 37.06 2.24
660 690 6.654582 TCATGAATTATACGCCATGCACTAAT 59.345 34.615 0.00 0.00 37.06 1.73
661 691 7.821846 TCATGAATTATACGCCATGCACTAATA 59.178 33.333 0.00 0.00 37.06 0.98
662 692 7.971183 TGAATTATACGCCATGCACTAATAA 57.029 32.000 0.00 0.00 0.00 1.40
663 693 8.384607 TGAATTATACGCCATGCACTAATAAA 57.615 30.769 0.00 0.00 0.00 1.40
664 694 8.841300 TGAATTATACGCCATGCACTAATAAAA 58.159 29.630 0.00 0.00 0.00 1.52
665 695 9.672086 GAATTATACGCCATGCACTAATAAAAA 57.328 29.630 0.00 0.00 0.00 1.94
667 697 9.840427 ATTATACGCCATGCACTAATAAAAATC 57.160 29.630 0.00 0.00 0.00 2.17
668 698 5.574891 ACGCCATGCACTAATAAAAATCA 57.425 34.783 0.00 0.00 0.00 2.57
669 699 5.339990 ACGCCATGCACTAATAAAAATCAC 58.660 37.500 0.00 0.00 0.00 3.06
670 700 4.739716 CGCCATGCACTAATAAAAATCACC 59.260 41.667 0.00 0.00 0.00 4.02
671 701 5.450412 CGCCATGCACTAATAAAAATCACCT 60.450 40.000 0.00 0.00 0.00 4.00
672 702 5.750067 GCCATGCACTAATAAAAATCACCTG 59.250 40.000 0.00 0.00 0.00 4.00
673 703 5.750067 CCATGCACTAATAAAAATCACCTGC 59.250 40.000 0.00 0.00 0.00 4.85
674 704 5.323371 TGCACTAATAAAAATCACCTGCC 57.677 39.130 0.00 0.00 0.00 4.85
675 705 4.769488 TGCACTAATAAAAATCACCTGCCA 59.231 37.500 0.00 0.00 0.00 4.92
676 706 5.421693 TGCACTAATAAAAATCACCTGCCAT 59.578 36.000 0.00 0.00 0.00 4.40
677 707 6.605194 TGCACTAATAAAAATCACCTGCCATA 59.395 34.615 0.00 0.00 0.00 2.74
678 708 7.123397 TGCACTAATAAAAATCACCTGCCATAA 59.877 33.333 0.00 0.00 0.00 1.90
679 709 8.143835 GCACTAATAAAAATCACCTGCCATAAT 58.856 33.333 0.00 0.00 0.00 1.28
680 710 9.467258 CACTAATAAAAATCACCTGCCATAATG 57.533 33.333 0.00 0.00 0.00 1.90
681 711 8.641541 ACTAATAAAAATCACCTGCCATAATGG 58.358 33.333 0.00 0.00 41.55 3.16
682 712 4.758773 AAAAATCACCTGCCATAATGGG 57.241 40.909 0.00 0.00 38.19 4.00
691 721 3.346426 CCATAATGGGCCTAGGTGC 57.654 57.895 11.31 0.00 32.67 5.01
698 728 2.362503 GGCCTAGGTGCCCCAAAC 60.363 66.667 11.31 0.00 46.11 2.93
699 729 2.438795 GCCTAGGTGCCCCAAACA 59.561 61.111 11.31 0.00 0.00 2.83
700 730 1.228737 GCCTAGGTGCCCCAAACAA 60.229 57.895 11.31 0.00 0.00 2.83
701 731 0.614697 GCCTAGGTGCCCCAAACAAT 60.615 55.000 11.31 0.00 0.00 2.71
702 732 1.937191 CCTAGGTGCCCCAAACAATT 58.063 50.000 0.00 0.00 0.00 2.32
703 733 2.256306 CCTAGGTGCCCCAAACAATTT 58.744 47.619 0.00 0.00 0.00 1.82
704 734 3.436243 CCTAGGTGCCCCAAACAATTTA 58.564 45.455 0.00 0.00 0.00 1.40
705 735 3.194755 CCTAGGTGCCCCAAACAATTTAC 59.805 47.826 0.00 0.00 0.00 2.01
706 736 1.974957 AGGTGCCCCAAACAATTTACC 59.025 47.619 0.00 0.00 0.00 2.85
707 737 1.974957 GGTGCCCCAAACAATTTACCT 59.025 47.619 0.00 0.00 0.00 3.08
708 738 3.166679 GGTGCCCCAAACAATTTACCTA 58.833 45.455 0.00 0.00 0.00 3.08
709 739 3.772572 GGTGCCCCAAACAATTTACCTAT 59.227 43.478 0.00 0.00 0.00 2.57
710 740 4.957327 GGTGCCCCAAACAATTTACCTATA 59.043 41.667 0.00 0.00 0.00 1.31
711 741 5.600898 GGTGCCCCAAACAATTTACCTATAT 59.399 40.000 0.00 0.00 0.00 0.86
743 773 7.966246 TGTTAATTTTCGCAAAGACCTAGTA 57.034 32.000 0.00 0.00 0.00 1.82
769 801 3.694734 ACTTCAACGCTTGTGACATTTG 58.305 40.909 0.00 0.00 0.00 2.32
787 824 2.401583 TGAATTGACTGATGGACCGG 57.598 50.000 0.00 0.00 0.00 5.28
861 899 0.320421 CGCTCCGTTTCTTCCCTTCA 60.320 55.000 0.00 0.00 0.00 3.02
866 904 1.235724 CGTTTCTTCCCTTCACACCC 58.764 55.000 0.00 0.00 0.00 4.61
867 905 1.235724 GTTTCTTCCCTTCACACCCG 58.764 55.000 0.00 0.00 0.00 5.28
868 906 0.841289 TTTCTTCCCTTCACACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
869 907 0.841289 TTCTTCCCTTCACACCCGTT 59.159 50.000 0.00 0.00 0.00 4.44
870 908 1.719529 TCTTCCCTTCACACCCGTTA 58.280 50.000 0.00 0.00 0.00 3.18
871 909 2.048601 TCTTCCCTTCACACCCGTTAA 58.951 47.619 0.00 0.00 0.00 2.01
872 910 2.640826 TCTTCCCTTCACACCCGTTAAT 59.359 45.455 0.00 0.00 0.00 1.40
873 911 3.073356 TCTTCCCTTCACACCCGTTAATT 59.927 43.478 0.00 0.00 0.00 1.40
874 912 3.062122 TCCCTTCACACCCGTTAATTC 57.938 47.619 0.00 0.00 0.00 2.17
875 913 2.640826 TCCCTTCACACCCGTTAATTCT 59.359 45.455 0.00 0.00 0.00 2.40
876 914 3.007635 CCCTTCACACCCGTTAATTCTC 58.992 50.000 0.00 0.00 0.00 2.87
877 915 3.007635 CCTTCACACCCGTTAATTCTCC 58.992 50.000 0.00 0.00 0.00 3.71
878 916 2.373540 TCACACCCGTTAATTCTCCG 57.626 50.000 0.00 0.00 0.00 4.63
879 917 0.725117 CACACCCGTTAATTCTCCGC 59.275 55.000 0.00 0.00 0.00 5.54
880 918 0.392060 ACACCCGTTAATTCTCCGCC 60.392 55.000 0.00 0.00 0.00 6.13
881 919 1.153509 ACCCGTTAATTCTCCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
882 920 1.885850 CCCGTTAATTCTCCGCCGG 60.886 63.158 0.00 0.00 35.32 6.13
895 933 2.031465 GCCGGGGAAAACGTGAGA 59.969 61.111 2.18 0.00 0.00 3.27
897 935 2.033194 CCGGGGAAAACGTGAGAGC 61.033 63.158 0.00 0.00 0.00 4.09
936 974 8.483758 TCTAAAAGTTGACAAGAAAGTACTCCT 58.516 33.333 0.00 0.00 0.00 3.69
937 975 9.760077 CTAAAAGTTGACAAGAAAGTACTCCTA 57.240 33.333 0.00 0.00 0.00 2.94
938 976 8.434733 AAAAGTTGACAAGAAAGTACTCCTAC 57.565 34.615 0.00 0.00 0.00 3.18
939 977 6.980416 AGTTGACAAGAAAGTACTCCTACT 57.020 37.500 0.00 0.00 34.38 2.57
940 978 7.362802 AGTTGACAAGAAAGTACTCCTACTT 57.637 36.000 0.00 0.00 43.87 2.24
941 979 8.474710 AGTTGACAAGAAAGTACTCCTACTTA 57.525 34.615 0.00 0.00 41.58 2.24
943 981 7.828508 TGACAAGAAAGTACTCCTACTTACA 57.171 36.000 0.00 2.26 41.58 2.41
953 991 8.480133 AGTACTCCTACTTACATATGAAAGGG 57.520 38.462 10.38 4.10 27.62 3.95
960 998 9.765795 CCTACTTACATATGAAAGGGTAGAAAG 57.234 37.037 10.38 0.53 0.00 2.62
981 1019 1.912110 CGACGTCCATTTCTCTCGAAC 59.088 52.381 10.58 0.00 0.00 3.95
1041 1084 1.761174 GTGGCTCCTGTTTCCCTCA 59.239 57.895 0.00 0.00 0.00 3.86
1042 1085 0.606673 GTGGCTCCTGTTTCCCTCAC 60.607 60.000 0.00 0.00 0.00 3.51
1043 1086 1.059584 TGGCTCCTGTTTCCCTCACA 61.060 55.000 0.00 0.00 0.00 3.58
1044 1087 0.110486 GGCTCCTGTTTCCCTCACAA 59.890 55.000 0.00 0.00 0.00 3.33
1045 1088 1.478654 GGCTCCTGTTTCCCTCACAAA 60.479 52.381 0.00 0.00 0.00 2.83
1046 1089 2.519013 GCTCCTGTTTCCCTCACAAAT 58.481 47.619 0.00 0.00 0.00 2.32
1048 1091 3.057245 GCTCCTGTTTCCCTCACAAATTC 60.057 47.826 0.00 0.00 0.00 2.17
1049 1092 3.146066 TCCTGTTTCCCTCACAAATTCG 58.854 45.455 0.00 0.00 0.00 3.34
1052 1095 1.067846 GTTTCCCTCACAAATTCGGCC 60.068 52.381 0.00 0.00 0.00 6.13
1071 1132 2.566724 GCCCAGAAATTCCATGTTTCCA 59.433 45.455 4.20 0.00 36.48 3.53
1114 1176 2.433604 CTGCTGCTCCAGGAATAGAAGA 59.566 50.000 0.00 0.00 30.12 2.87
1135 1197 2.829592 GAATAGCGGGGACAGGGG 59.170 66.667 0.00 0.00 0.00 4.79
1305 1380 1.935327 GCCTGTACGTTCTCTCGCCT 61.935 60.000 0.00 0.00 0.00 5.52
1306 1381 0.526662 CCTGTACGTTCTCTCGCCTT 59.473 55.000 0.00 0.00 0.00 4.35
1308 1383 2.251893 CTGTACGTTCTCTCGCCTTTC 58.748 52.381 0.00 0.00 0.00 2.62
1309 1384 1.884579 TGTACGTTCTCTCGCCTTTCT 59.115 47.619 0.00 0.00 0.00 2.52
1310 1385 2.295349 TGTACGTTCTCTCGCCTTTCTT 59.705 45.455 0.00 0.00 0.00 2.52
1311 1386 2.528041 ACGTTCTCTCGCCTTTCTTT 57.472 45.000 0.00 0.00 0.00 2.52
1312 1387 2.405172 ACGTTCTCTCGCCTTTCTTTC 58.595 47.619 0.00 0.00 0.00 2.62
1313 1388 2.036089 ACGTTCTCTCGCCTTTCTTTCT 59.964 45.455 0.00 0.00 0.00 2.52
1314 1389 3.060602 CGTTCTCTCGCCTTTCTTTCTT 58.939 45.455 0.00 0.00 0.00 2.52
1315 1390 3.495001 CGTTCTCTCGCCTTTCTTTCTTT 59.505 43.478 0.00 0.00 0.00 2.52
1316 1391 4.684703 CGTTCTCTCGCCTTTCTTTCTTTA 59.315 41.667 0.00 0.00 0.00 1.85
1317 1392 5.348997 CGTTCTCTCGCCTTTCTTTCTTTAT 59.651 40.000 0.00 0.00 0.00 1.40
1318 1393 6.128526 CGTTCTCTCGCCTTTCTTTCTTTATT 60.129 38.462 0.00 0.00 0.00 1.40
1319 1394 7.571428 CGTTCTCTCGCCTTTCTTTCTTTATTT 60.571 37.037 0.00 0.00 0.00 1.40
1320 1395 7.365840 TCTCTCGCCTTTCTTTCTTTATTTC 57.634 36.000 0.00 0.00 0.00 2.17
1321 1396 7.162082 TCTCTCGCCTTTCTTTCTTTATTTCT 58.838 34.615 0.00 0.00 0.00 2.52
1322 1397 7.661847 TCTCTCGCCTTTCTTTCTTTATTTCTT 59.338 33.333 0.00 0.00 0.00 2.52
1323 1398 8.166422 TCTCGCCTTTCTTTCTTTATTTCTTT 57.834 30.769 0.00 0.00 0.00 2.52
1324 1399 8.076178 TCTCGCCTTTCTTTCTTTATTTCTTTG 58.924 33.333 0.00 0.00 0.00 2.77
1325 1400 7.712797 TCGCCTTTCTTTCTTTATTTCTTTGT 58.287 30.769 0.00 0.00 0.00 2.83
1326 1401 8.194769 TCGCCTTTCTTTCTTTATTTCTTTGTT 58.805 29.630 0.00 0.00 0.00 2.83
1327 1402 8.817100 CGCCTTTCTTTCTTTATTTCTTTGTTT 58.183 29.630 0.00 0.00 0.00 2.83
1347 1422 5.126869 TGTTTCTTGTCCTGAATTGCTTCAA 59.873 36.000 0.00 0.00 40.78 2.69
1352 1427 7.950512 TCTTGTCCTGAATTGCTTCAATTTTA 58.049 30.769 6.28 0.05 43.05 1.52
1353 1428 7.867403 TCTTGTCCTGAATTGCTTCAATTTTAC 59.133 33.333 6.28 4.27 43.05 2.01
1354 1429 7.048629 TGTCCTGAATTGCTTCAATTTTACA 57.951 32.000 6.28 6.21 43.05 2.41
1355 1430 7.147312 TGTCCTGAATTGCTTCAATTTTACAG 58.853 34.615 6.28 8.59 43.05 2.74
1356 1431 7.147976 GTCCTGAATTGCTTCAATTTTACAGT 58.852 34.615 6.28 0.00 43.05 3.55
1397 1472 1.399089 CGATGGGTTTCCGCGTAAAAT 59.601 47.619 4.92 0.00 35.24 1.82
1399 1474 3.249080 CGATGGGTTTCCGCGTAAAATAT 59.751 43.478 4.92 0.00 35.24 1.28
1405 1481 4.497966 GGTTTCCGCGTAAAATATTTCTGC 59.502 41.667 4.92 5.33 0.00 4.26
1409 1485 4.034742 TCCGCGTAAAATATTTCTGCTTCC 59.965 41.667 4.92 0.00 0.00 3.46
1411 1487 5.328691 CGCGTAAAATATTTCTGCTTCCAA 58.671 37.500 0.10 0.00 0.00 3.53
1474 1571 6.263168 TGATGTTTCTCCTCTCTTGTTTTTCC 59.737 38.462 0.00 0.00 0.00 3.13
1542 1639 8.484799 GTTATTATGATCGTATTTGTTCGCTCA 58.515 33.333 0.00 0.00 36.82 4.26
1732 1835 7.369803 TCTGAGCAAATTTACAGTCATCTTC 57.630 36.000 14.42 0.00 0.00 2.87
1733 1836 6.372659 TCTGAGCAAATTTACAGTCATCTTCC 59.627 38.462 14.42 0.00 0.00 3.46
1734 1837 6.003326 TGAGCAAATTTACAGTCATCTTCCA 58.997 36.000 0.00 0.00 0.00 3.53
1735 1838 6.660521 TGAGCAAATTTACAGTCATCTTCCAT 59.339 34.615 0.00 0.00 0.00 3.41
1736 1839 7.093322 AGCAAATTTACAGTCATCTTCCATC 57.907 36.000 0.00 0.00 0.00 3.51
1737 1840 6.888632 AGCAAATTTACAGTCATCTTCCATCT 59.111 34.615 0.00 0.00 0.00 2.90
1738 1841 8.049117 AGCAAATTTACAGTCATCTTCCATCTA 58.951 33.333 0.00 0.00 0.00 1.98
1739 1842 8.677300 GCAAATTTACAGTCATCTTCCATCTAA 58.323 33.333 0.00 0.00 0.00 2.10
1744 1847 9.436957 TTTACAGTCATCTTCCATCTAAGAAAC 57.563 33.333 0.00 0.00 38.90 2.78
1745 1848 7.009179 ACAGTCATCTTCCATCTAAGAAACA 57.991 36.000 0.00 0.00 38.90 2.83
1746 1849 7.453393 ACAGTCATCTTCCATCTAAGAAACAA 58.547 34.615 0.00 0.00 38.90 2.83
1747 1850 8.105829 ACAGTCATCTTCCATCTAAGAAACAAT 58.894 33.333 0.00 0.00 38.90 2.71
1767 1870 5.104693 ACAATATGGTCAGATGGTACCGAAA 60.105 40.000 7.57 0.00 38.70 3.46
2919 3075 3.146066 GGCGGATTCAGGCATATTGTTA 58.854 45.455 5.51 0.00 0.00 2.41
3055 3212 9.864034 CTTACAGTTCTGTACAAAAATGTACTG 57.136 33.333 18.87 16.00 43.55 2.74
3063 3220 7.439955 TCTGTACAAAAATGTACTGTGGTAGTG 59.560 37.037 17.18 0.00 43.55 2.74
3170 3327 3.876198 GCGCCGCGATCCACATTT 61.876 61.111 18.91 0.00 0.00 2.32
3173 3330 1.775039 CGCCGCGATCCACATTTGAT 61.775 55.000 8.23 0.00 0.00 2.57
3187 3344 5.163854 CCACATTTGATGTTCTCGGTAAGTC 60.164 44.000 0.00 0.00 42.70 3.01
3227 3384 7.040201 AGTCAATCACTATGCATGTTGTTTTCT 60.040 33.333 10.16 5.87 31.37 2.52
3277 3434 4.753610 TCTTGTCTTGTGCTCTCTGAATTG 59.246 41.667 0.00 0.00 0.00 2.32
3470 3710 7.886338 ACCATCTATTGTCAGTTTTCCTTTTC 58.114 34.615 0.00 0.00 0.00 2.29
3682 3923 8.994170 GTAAAATCTTGATCTTATAGGTGCTCC 58.006 37.037 0.00 0.00 0.00 4.70
3742 3983 7.036996 TGCTGTCAAACTGTCAATTGAATTA 57.963 32.000 10.35 0.00 37.31 1.40
3744 3985 7.141363 GCTGTCAAACTGTCAATTGAATTACT 58.859 34.615 10.35 0.00 37.31 2.24
3930 4190 7.197071 AGCTATGTCTGAATCTTACTCTACG 57.803 40.000 0.00 0.00 0.00 3.51
4017 4370 3.611970 GTGACTACTGCTAGAGAGGACA 58.388 50.000 0.00 0.00 0.00 4.02
4331 4868 7.381948 TGAATTCAACCATGTTCTTTTCATTCG 59.618 33.333 5.45 0.00 0.00 3.34
4369 4906 7.995663 ACCCCACCTCATATGCTAAATTTATA 58.004 34.615 0.00 0.00 0.00 0.98
4809 5719 4.087930 CGTTGCTTTTACATTGCCTAAACG 59.912 41.667 0.00 0.00 31.31 3.60
4978 8009 4.000988 CCGGCATACAGTTTAGTTCAGTT 58.999 43.478 0.00 0.00 0.00 3.16
4979 8010 4.454504 CCGGCATACAGTTTAGTTCAGTTT 59.545 41.667 0.00 0.00 0.00 2.66
4996 8027 9.150348 AGTTCAGTTTTTGACAAAGTTTATTGG 57.850 29.630 0.10 0.00 34.94 3.16
5050 8084 1.537202 GAAATCAGCAGGCAGAACGTT 59.463 47.619 0.00 0.00 0.00 3.99
5185 8219 4.212716 ACCTGAATACCATACGTGCTCTA 58.787 43.478 0.00 0.00 0.00 2.43
5288 8323 7.118496 AGCTGCTATAGTCACTCAATAAGTT 57.882 36.000 0.00 0.00 35.45 2.66
5319 8354 2.093128 CCTAAGCTCCCGGTATTTGTGT 60.093 50.000 0.00 0.00 0.00 3.72
5453 8488 6.819146 GCTTTGCAGTAATATATACTCCCTCC 59.181 42.308 0.00 0.00 0.00 4.30
5641 8677 4.008074 ACTGAGACTGGTATGTGGTTTG 57.992 45.455 0.00 0.00 0.00 2.93
5642 8678 2.744202 CTGAGACTGGTATGTGGTTTGC 59.256 50.000 0.00 0.00 0.00 3.68
5643 8679 2.084546 GAGACTGGTATGTGGTTTGCC 58.915 52.381 0.00 0.00 0.00 4.52
5644 8680 1.173913 GACTGGTATGTGGTTTGCCC 58.826 55.000 0.00 0.00 0.00 5.36
5645 8681 0.480690 ACTGGTATGTGGTTTGCCCA 59.519 50.000 0.00 0.00 42.51 5.36
5809 9096 2.224079 TGAATTCTGCTGCTTCGTTGTC 59.776 45.455 7.05 0.00 0.00 3.18
5826 9113 1.135660 TGTCGAGACTTCATCTGTCGC 60.136 52.381 4.78 0.00 38.00 5.19
5832 9119 2.434185 TTCATCTGTCGCGTGGCC 60.434 61.111 5.77 0.00 0.00 5.36
5834 9121 2.723586 TTCATCTGTCGCGTGGCCAA 62.724 55.000 7.24 0.00 0.00 4.52
5867 9154 3.545481 GTGTCGATGCGCAGTCGG 61.545 66.667 28.82 15.04 39.45 4.79
5973 12981 7.426929 TCTAGAAGAAGAAAAATGCACTGTC 57.573 36.000 0.00 0.00 0.00 3.51
6071 13107 3.131709 TCCATGCTAATGCTAAGCTCC 57.868 47.619 6.98 0.00 40.73 4.70
6109 13146 6.054860 ACTAATGCTAAGCTCCTTGAGAAA 57.945 37.500 0.00 0.00 0.00 2.52
6137 13174 6.991485 AAATGCTCTAAATGTTCAAACACG 57.009 33.333 0.00 0.00 42.51 4.49
6214 13251 2.690786 ACGTAAATTGCGTGCCTTAGA 58.309 42.857 8.54 0.00 41.33 2.10
6380 13433 3.562108 ATGGGACGGAGGGAGTATATT 57.438 47.619 0.00 0.00 0.00 1.28
6412 13465 4.051237 TGAATCGGTTGCGAGATCTTATG 58.949 43.478 0.00 0.00 0.00 1.90
6436 13490 1.781786 TTCAGCTCTAGCCTACCCAG 58.218 55.000 0.00 0.00 43.38 4.45
6437 13491 0.631753 TCAGCTCTAGCCTACCCAGT 59.368 55.000 0.00 0.00 43.38 4.00
6472 13526 3.258123 AGAGGCTTTGTTGTTGTTGTTGT 59.742 39.130 0.00 0.00 0.00 3.32
6475 13529 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
297 300 1.153086 GGCTGCTCGTGGGATCAAT 60.153 57.895 0.00 0.00 0.00 2.57
377 380 1.016130 AATCTTCAGCGGTGCTCGTG 61.016 55.000 10.38 0.00 36.40 4.35
541 571 6.128035 TGTCGTACCGCTGTAAATTTCTACTA 60.128 38.462 0.00 0.00 0.00 1.82
561 591 0.249322 CCGAACCAAGACACTGTCGT 60.249 55.000 3.46 0.00 37.67 4.34
566 596 2.490991 GCTAAACCGAACCAAGACACT 58.509 47.619 0.00 0.00 0.00 3.55
608 638 1.165270 GTTTTCCATCACCCTGGTCG 58.835 55.000 0.00 0.00 37.57 4.79
629 659 8.522003 TGCATGGCGTATAATTCATGAAATAAT 58.478 29.630 13.09 8.74 39.27 1.28
630 660 7.807433 GTGCATGGCGTATAATTCATGAAATAA 59.193 33.333 13.09 1.13 39.27 1.40
631 661 7.174772 AGTGCATGGCGTATAATTCATGAAATA 59.825 33.333 13.09 9.10 39.27 1.40
632 662 6.016024 AGTGCATGGCGTATAATTCATGAAAT 60.016 34.615 13.09 6.75 39.27 2.17
633 663 5.299028 AGTGCATGGCGTATAATTCATGAAA 59.701 36.000 13.09 0.00 39.27 2.69
634 664 4.821260 AGTGCATGGCGTATAATTCATGAA 59.179 37.500 11.26 11.26 39.27 2.57
635 665 4.388485 AGTGCATGGCGTATAATTCATGA 58.612 39.130 12.04 0.00 39.27 3.07
636 666 4.754372 AGTGCATGGCGTATAATTCATG 57.246 40.909 0.00 0.00 39.74 3.07
637 667 8.560355 TTATTAGTGCATGGCGTATAATTCAT 57.440 30.769 0.00 0.00 0.00 2.57
638 668 7.971183 TTATTAGTGCATGGCGTATAATTCA 57.029 32.000 0.00 0.00 0.00 2.57
639 669 9.672086 TTTTTATTAGTGCATGGCGTATAATTC 57.328 29.630 0.00 0.00 0.00 2.17
641 671 9.840427 GATTTTTATTAGTGCATGGCGTATAAT 57.160 29.630 0.00 0.00 0.00 1.28
642 672 8.841300 TGATTTTTATTAGTGCATGGCGTATAA 58.159 29.630 0.00 0.00 0.00 0.98
643 673 8.286800 GTGATTTTTATTAGTGCATGGCGTATA 58.713 33.333 0.00 0.00 0.00 1.47
644 674 7.138736 GTGATTTTTATTAGTGCATGGCGTAT 58.861 34.615 0.00 0.00 0.00 3.06
645 675 6.459024 GGTGATTTTTATTAGTGCATGGCGTA 60.459 38.462 0.00 0.00 0.00 4.42
646 676 5.339990 GTGATTTTTATTAGTGCATGGCGT 58.660 37.500 0.00 0.00 0.00 5.68
647 677 4.739716 GGTGATTTTTATTAGTGCATGGCG 59.260 41.667 0.00 0.00 0.00 5.69
648 678 5.750067 CAGGTGATTTTTATTAGTGCATGGC 59.250 40.000 0.00 0.00 0.00 4.40
649 679 5.750067 GCAGGTGATTTTTATTAGTGCATGG 59.250 40.000 0.00 0.00 0.00 3.66
650 680 5.750067 GGCAGGTGATTTTTATTAGTGCATG 59.250 40.000 0.00 0.00 0.00 4.06
651 681 5.421693 TGGCAGGTGATTTTTATTAGTGCAT 59.578 36.000 0.00 0.00 0.00 3.96
652 682 4.769488 TGGCAGGTGATTTTTATTAGTGCA 59.231 37.500 0.00 0.00 0.00 4.57
653 683 5.323371 TGGCAGGTGATTTTTATTAGTGC 57.677 39.130 0.00 0.00 0.00 4.40
654 684 9.467258 CATTATGGCAGGTGATTTTTATTAGTG 57.533 33.333 0.00 0.00 0.00 2.74
655 685 8.641541 CCATTATGGCAGGTGATTTTTATTAGT 58.358 33.333 0.00 0.00 0.00 2.24
656 686 8.090214 CCCATTATGGCAGGTGATTTTTATTAG 58.910 37.037 5.57 0.00 35.79 1.73
657 687 7.961351 CCCATTATGGCAGGTGATTTTTATTA 58.039 34.615 5.57 0.00 35.79 0.98
658 688 6.829849 CCCATTATGGCAGGTGATTTTTATT 58.170 36.000 5.57 0.00 35.79 1.40
659 689 6.423776 CCCATTATGGCAGGTGATTTTTAT 57.576 37.500 5.57 0.00 35.79 1.40
660 690 5.867903 CCCATTATGGCAGGTGATTTTTA 57.132 39.130 5.57 0.00 35.79 1.52
661 691 4.758773 CCCATTATGGCAGGTGATTTTT 57.241 40.909 5.57 0.00 35.79 1.94
673 703 3.346426 GCACCTAGGCCCATTATGG 57.654 57.895 9.30 3.85 37.25 2.74
688 718 6.724893 ATATAGGTAAATTGTTTGGGGCAC 57.275 37.500 0.00 0.00 0.00 5.01
719 749 6.870971 ACTAGGTCTTTGCGAAAATTAACA 57.129 33.333 0.00 0.00 0.00 2.41
743 773 4.878439 TGTCACAAGCGTTGAAGTATACT 58.122 39.130 0.00 0.00 0.00 2.12
755 787 4.380678 CAGTCAATTCAAATGTCACAAGCG 59.619 41.667 0.00 0.00 0.00 4.68
769 801 2.009774 CACCGGTCCATCAGTCAATTC 58.990 52.381 2.59 0.00 0.00 2.17
787 824 2.975266 TCATGGCATTTGCATTTCCAC 58.025 42.857 0.00 0.00 44.36 4.02
848 886 1.235724 CGGGTGTGAAGGGAAGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
861 899 0.392060 GGCGGAGAATTAACGGGTGT 60.392 55.000 0.00 0.00 0.00 4.16
866 904 1.885850 CCCCGGCGGAGAATTAACG 60.886 63.158 30.79 6.80 0.00 3.18
867 905 0.107557 TTCCCCGGCGGAGAATTAAC 60.108 55.000 30.79 0.00 43.39 2.01
868 906 0.619505 TTTCCCCGGCGGAGAATTAA 59.380 50.000 30.79 8.43 43.39 1.40
869 907 0.619505 TTTTCCCCGGCGGAGAATTA 59.380 50.000 30.79 14.31 43.39 1.40
870 908 0.963856 GTTTTCCCCGGCGGAGAATT 60.964 55.000 30.79 0.00 43.39 2.17
871 909 1.378119 GTTTTCCCCGGCGGAGAAT 60.378 57.895 30.79 0.00 43.39 2.40
872 910 2.032987 GTTTTCCCCGGCGGAGAA 59.967 61.111 30.79 24.90 43.39 2.87
873 911 4.382320 CGTTTTCCCCGGCGGAGA 62.382 66.667 30.79 19.21 43.39 3.71
874 912 4.692475 ACGTTTTCCCCGGCGGAG 62.692 66.667 30.79 16.41 43.39 4.63
875 913 4.992511 CACGTTTTCCCCGGCGGA 62.993 66.667 30.79 5.01 39.68 5.54
876 914 4.992511 TCACGTTTTCCCCGGCGG 62.993 66.667 21.46 21.46 0.00 6.13
877 915 3.419759 CTCACGTTTTCCCCGGCG 61.420 66.667 0.00 0.00 0.00 6.46
878 916 2.031465 TCTCACGTTTTCCCCGGC 59.969 61.111 0.00 0.00 0.00 6.13
879 917 2.033194 GCTCTCACGTTTTCCCCGG 61.033 63.158 0.00 0.00 0.00 5.73
880 918 0.882927 TTGCTCTCACGTTTTCCCCG 60.883 55.000 0.00 0.00 0.00 5.73
881 919 0.875059 CTTGCTCTCACGTTTTCCCC 59.125 55.000 0.00 0.00 0.00 4.81
882 920 1.801178 CTCTTGCTCTCACGTTTTCCC 59.199 52.381 0.00 0.00 0.00 3.97
929 967 8.247666 ACCCTTTCATATGTAAGTAGGAGTAC 57.752 38.462 17.67 0.00 0.00 2.73
933 971 9.496710 TTTCTACCCTTTCATATGTAAGTAGGA 57.503 33.333 17.67 8.97 0.00 2.94
936 974 7.924412 CGCTTTCTACCCTTTCATATGTAAGTA 59.076 37.037 17.67 7.39 0.00 2.24
937 975 6.761714 CGCTTTCTACCCTTTCATATGTAAGT 59.238 38.462 17.67 6.73 0.00 2.24
938 976 6.984474 TCGCTTTCTACCCTTTCATATGTAAG 59.016 38.462 13.57 13.57 0.00 2.34
939 977 6.759827 GTCGCTTTCTACCCTTTCATATGTAA 59.240 38.462 1.90 0.00 0.00 2.41
940 978 6.278363 GTCGCTTTCTACCCTTTCATATGTA 58.722 40.000 1.90 0.00 0.00 2.29
941 979 5.116882 GTCGCTTTCTACCCTTTCATATGT 58.883 41.667 1.90 0.00 0.00 2.29
943 981 4.142004 ACGTCGCTTTCTACCCTTTCATAT 60.142 41.667 0.00 0.00 0.00 1.78
946 984 1.342174 ACGTCGCTTTCTACCCTTTCA 59.658 47.619 0.00 0.00 0.00 2.69
947 985 1.991264 GACGTCGCTTTCTACCCTTTC 59.009 52.381 0.00 0.00 0.00 2.62
948 986 1.337541 GGACGTCGCTTTCTACCCTTT 60.338 52.381 9.92 0.00 0.00 3.11
949 987 0.245813 GGACGTCGCTTTCTACCCTT 59.754 55.000 9.92 0.00 0.00 3.95
950 988 0.896940 TGGACGTCGCTTTCTACCCT 60.897 55.000 9.92 0.00 0.00 4.34
951 989 0.175073 ATGGACGTCGCTTTCTACCC 59.825 55.000 9.92 0.00 0.00 3.69
952 990 2.005971 AATGGACGTCGCTTTCTACC 57.994 50.000 9.92 0.00 0.00 3.18
953 991 3.251571 AGAAATGGACGTCGCTTTCTAC 58.748 45.455 28.37 12.98 36.46 2.59
960 998 0.179171 TCGAGAGAAATGGACGTCGC 60.179 55.000 9.92 3.20 37.03 5.19
981 1019 3.439129 TGCGTATATACCCACATCGAGAG 59.561 47.826 7.30 0.00 0.00 3.20
989 1027 1.523934 GCAACGTGCGTATATACCCAC 59.476 52.381 17.24 17.24 31.71 4.61
996 1034 0.248580 CGGTAGGCAACGTGCGTATA 60.249 55.000 12.93 1.84 46.21 1.47
1006 1049 4.451150 CCTGCTCGCGGTAGGCAA 62.451 66.667 16.08 3.70 40.74 4.52
1029 1072 2.228822 CCGAATTTGTGAGGGAAACAGG 59.771 50.000 0.00 0.00 0.00 4.00
1033 1076 1.253100 GGCCGAATTTGTGAGGGAAA 58.747 50.000 0.00 0.00 0.00 3.13
1034 1077 0.610785 GGGCCGAATTTGTGAGGGAA 60.611 55.000 0.00 0.00 0.00 3.97
1035 1078 1.001393 GGGCCGAATTTGTGAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
1036 1079 1.304052 TGGGCCGAATTTGTGAGGG 60.304 57.895 0.00 0.00 0.00 4.30
1041 1084 2.233676 GGAATTTCTGGGCCGAATTTGT 59.766 45.455 16.91 4.22 0.00 2.83
1042 1085 2.233431 TGGAATTTCTGGGCCGAATTTG 59.767 45.455 16.91 0.00 0.00 2.32
1043 1086 2.534990 TGGAATTTCTGGGCCGAATTT 58.465 42.857 10.74 12.51 0.00 1.82
1044 1087 2.230130 TGGAATTTCTGGGCCGAATT 57.770 45.000 10.74 10.78 0.00 2.17
1045 1088 2.034124 CATGGAATTTCTGGGCCGAAT 58.966 47.619 10.74 3.22 0.00 3.34
1046 1089 1.272425 ACATGGAATTTCTGGGCCGAA 60.272 47.619 0.00 2.59 0.00 4.30
1048 1091 1.185315 AACATGGAATTTCTGGGCCG 58.815 50.000 0.00 0.00 0.00 6.13
1049 1092 2.093500 GGAAACATGGAATTTCTGGGCC 60.093 50.000 0.00 0.00 36.49 5.80
1052 1095 4.870123 TGTGGAAACATGGAATTTCTGG 57.130 40.909 0.00 0.00 46.14 3.86
1071 1132 0.827368 GAGGAAGCGGAGGAAGATGT 59.173 55.000 0.00 0.00 0.00 3.06
1114 1176 2.762459 TGTCCCCGCTATTCGCCT 60.762 61.111 0.00 0.00 36.73 5.52
1139 1201 4.598894 CGATCCCCTCTGCCTGCG 62.599 72.222 0.00 0.00 0.00 5.18
1140 1202 3.157252 TCGATCCCCTCTGCCTGC 61.157 66.667 0.00 0.00 0.00 4.85
1141 1203 1.045350 TTCTCGATCCCCTCTGCCTG 61.045 60.000 0.00 0.00 0.00 4.85
1142 1204 0.105246 ATTCTCGATCCCCTCTGCCT 60.105 55.000 0.00 0.00 0.00 4.75
1143 1205 1.633774 TATTCTCGATCCCCTCTGCC 58.366 55.000 0.00 0.00 0.00 4.85
1310 1385 9.801873 CAGGACAAGAAACAAAGAAATAAAGAA 57.198 29.630 0.00 0.00 0.00 2.52
1311 1386 9.184523 TCAGGACAAGAAACAAAGAAATAAAGA 57.815 29.630 0.00 0.00 0.00 2.52
1312 1387 9.801873 TTCAGGACAAGAAACAAAGAAATAAAG 57.198 29.630 0.00 0.00 0.00 1.85
1315 1390 9.748708 CAATTCAGGACAAGAAACAAAGAAATA 57.251 29.630 0.00 0.00 0.00 1.40
1316 1391 7.225341 GCAATTCAGGACAAGAAACAAAGAAAT 59.775 33.333 0.00 0.00 0.00 2.17
1317 1392 6.534793 GCAATTCAGGACAAGAAACAAAGAAA 59.465 34.615 0.00 0.00 0.00 2.52
1318 1393 6.042143 GCAATTCAGGACAAGAAACAAAGAA 58.958 36.000 0.00 0.00 0.00 2.52
1319 1394 5.360714 AGCAATTCAGGACAAGAAACAAAGA 59.639 36.000 0.00 0.00 0.00 2.52
1320 1395 5.594926 AGCAATTCAGGACAAGAAACAAAG 58.405 37.500 0.00 0.00 0.00 2.77
1321 1396 5.596836 AGCAATTCAGGACAAGAAACAAA 57.403 34.783 0.00 0.00 0.00 2.83
1322 1397 5.126869 TGAAGCAATTCAGGACAAGAAACAA 59.873 36.000 0.00 0.00 0.00 2.83
1323 1398 4.644234 TGAAGCAATTCAGGACAAGAAACA 59.356 37.500 0.00 0.00 0.00 2.83
1324 1399 5.186996 TGAAGCAATTCAGGACAAGAAAC 57.813 39.130 0.00 0.00 0.00 2.78
1325 1400 5.850557 TTGAAGCAATTCAGGACAAGAAA 57.149 34.783 0.00 0.00 31.87 2.52
1326 1401 6.409524 AATTGAAGCAATTCAGGACAAGAA 57.590 33.333 0.00 0.00 39.50 2.52
1327 1402 6.409524 AAATTGAAGCAATTCAGGACAAGA 57.590 33.333 5.92 0.00 42.32 3.02
1328 1403 7.652909 TGTAAAATTGAAGCAATTCAGGACAAG 59.347 33.333 5.92 0.00 42.32 3.16
1334 1409 9.683069 AAGTACTGTAAAATTGAAGCAATTCAG 57.317 29.630 13.80 13.80 42.32 3.02
1347 1422 8.101654 TGCCGAAATAACAAGTACTGTAAAAT 57.898 30.769 0.00 0.00 37.23 1.82
1352 1427 4.638304 ACTGCCGAAATAACAAGTACTGT 58.362 39.130 0.00 0.00 41.27 3.55
1353 1428 5.607119 AACTGCCGAAATAACAAGTACTG 57.393 39.130 0.00 0.00 0.00 2.74
1354 1429 5.107220 CGAAACTGCCGAAATAACAAGTACT 60.107 40.000 0.00 0.00 0.00 2.73
1355 1430 5.077424 CGAAACTGCCGAAATAACAAGTAC 58.923 41.667 0.00 0.00 0.00 2.73
1356 1431 4.989797 TCGAAACTGCCGAAATAACAAGTA 59.010 37.500 0.00 0.00 32.64 2.24
1397 1472 4.451096 GTCACGAACTTGGAAGCAGAAATA 59.549 41.667 0.00 0.00 0.00 1.40
1399 1474 2.612212 GTCACGAACTTGGAAGCAGAAA 59.388 45.455 0.00 0.00 0.00 2.52
1405 1481 4.273480 ACTTTCATGTCACGAACTTGGAAG 59.727 41.667 18.84 18.84 46.73 3.46
1409 1485 5.409643 AAGACTTTCATGTCACGAACTTG 57.590 39.130 0.00 0.00 39.27 3.16
1411 1487 6.436843 AAAAAGACTTTCATGTCACGAACT 57.563 33.333 0.00 0.00 39.27 3.01
1435 1532 2.307496 ACATCAAAATCAGCCCCACA 57.693 45.000 0.00 0.00 0.00 4.17
1474 1571 4.384056 TGAAAAGAGAGCCTCAAAGTCAG 58.616 43.478 0.00 0.00 32.06 3.51
1514 1611 8.273557 AGCGAACAAATACGATCATAATAACAC 58.726 33.333 0.00 0.00 0.00 3.32
1542 1639 1.349067 ACGGGGAGAGTTAGCAAAGT 58.651 50.000 0.00 0.00 0.00 2.66
1598 1695 5.061560 GTGAACACGAGATCTGCTTCTTTAG 59.938 44.000 0.00 0.00 0.00 1.85
1732 1835 8.781196 CATCTGACCATATTGTTTCTTAGATGG 58.219 37.037 0.00 0.00 39.80 3.51
1733 1836 8.781196 CCATCTGACCATATTGTTTCTTAGATG 58.219 37.037 0.00 0.00 38.19 2.90
1734 1837 8.497745 ACCATCTGACCATATTGTTTCTTAGAT 58.502 33.333 0.00 0.00 0.00 1.98
1735 1838 7.861629 ACCATCTGACCATATTGTTTCTTAGA 58.138 34.615 0.00 0.00 0.00 2.10
1736 1839 9.046296 GTACCATCTGACCATATTGTTTCTTAG 57.954 37.037 0.00 0.00 0.00 2.18
1737 1840 7.990886 GGTACCATCTGACCATATTGTTTCTTA 59.009 37.037 7.15 0.00 35.65 2.10
1738 1841 6.828785 GGTACCATCTGACCATATTGTTTCTT 59.171 38.462 7.15 0.00 35.65 2.52
1739 1842 6.357367 GGTACCATCTGACCATATTGTTTCT 58.643 40.000 7.15 0.00 35.65 2.52
1740 1843 5.236478 CGGTACCATCTGACCATATTGTTTC 59.764 44.000 13.54 0.00 35.26 2.78
1741 1844 5.104693 TCGGTACCATCTGACCATATTGTTT 60.105 40.000 13.54 0.00 35.26 2.83
1742 1845 4.407621 TCGGTACCATCTGACCATATTGTT 59.592 41.667 13.54 0.00 35.26 2.83
1743 1846 3.964688 TCGGTACCATCTGACCATATTGT 59.035 43.478 13.54 0.00 35.26 2.71
1744 1847 4.600692 TCGGTACCATCTGACCATATTG 57.399 45.455 13.54 0.00 35.26 1.90
1745 1848 5.623956 TTTCGGTACCATCTGACCATATT 57.376 39.130 13.54 0.00 35.26 1.28
1746 1849 5.306937 TCATTTCGGTACCATCTGACCATAT 59.693 40.000 13.54 0.00 35.26 1.78
1747 1850 4.651962 TCATTTCGGTACCATCTGACCATA 59.348 41.667 13.54 0.00 35.26 2.74
3042 3199 6.354130 AGTCACTACCACAGTACATTTTTGT 58.646 36.000 0.00 0.00 34.98 2.83
3055 3212 8.189460 CACTAATTTAGTAGGAGTCACTACCAC 58.811 40.741 8.71 0.00 43.39 4.16
3063 3220 6.641474 AGGTTGCACTAATTTAGTAGGAGTC 58.359 40.000 8.71 0.00 37.23 3.36
3155 3312 0.317269 CATCAAATGTGGATCGCGGC 60.317 55.000 6.13 0.00 0.00 6.53
3170 3327 3.181490 CCATCGACTTACCGAGAACATCA 60.181 47.826 0.00 0.00 42.21 3.07
3173 3330 2.163010 GTCCATCGACTTACCGAGAACA 59.837 50.000 0.00 0.00 42.21 3.18
3241 3398 6.344500 CACAAGACAAGACCTTAGCATAGAT 58.656 40.000 0.00 0.00 0.00 1.98
3277 3434 4.209080 GCTTGCATGGTTACTGAAAACAAC 59.791 41.667 1.34 0.00 38.58 3.32
3376 3533 4.224147 TCTCCGTTGATATCCTTTGGTGAA 59.776 41.667 0.00 0.00 0.00 3.18
3377 3534 3.772572 TCTCCGTTGATATCCTTTGGTGA 59.227 43.478 0.00 1.36 0.00 4.02
3421 3578 8.422566 GGTACTATAAAACATAGAAGTCAGCCT 58.577 37.037 0.00 0.00 0.00 4.58
3450 3690 9.034544 CCAAAAGAAAAGGAAAACTGACAATAG 57.965 33.333 0.00 0.00 0.00 1.73
3470 3710 0.965439 TGACAATTCCCCGCCAAAAG 59.035 50.000 0.00 0.00 0.00 2.27
3601 3841 3.604875 TCAGAACCCTCATTTACGGAC 57.395 47.619 0.00 0.00 0.00 4.79
3682 3923 2.930040 CTGATGTTGTTACAGCCGTAGG 59.070 50.000 0.00 0.00 44.11 3.18
3742 3983 4.202223 CCGTGGGTTATTATCTGCTACAGT 60.202 45.833 0.00 0.00 32.61 3.55
3744 3985 3.707611 ACCGTGGGTTATTATCTGCTACA 59.292 43.478 0.00 0.00 27.29 2.74
3930 4190 4.253685 TGTGAGATTCAAAAGACCGATCC 58.746 43.478 0.00 0.00 0.00 3.36
4190 4727 7.148641 AGACATAAATAGGCTAAGACGATGTG 58.851 38.462 0.00 0.00 0.00 3.21
4331 4868 1.037493 GTGGGGTTGGAACTTGGAAC 58.963 55.000 0.00 0.00 0.00 3.62
4369 4906 7.660112 TCACAAAACATGATCAAATAGCAACT 58.340 30.769 0.00 0.00 0.00 3.16
4653 5563 9.312904 TCCTCCTTCATCAACTTCAAAATTAAT 57.687 29.630 0.00 0.00 0.00 1.40
4809 5719 1.864565 AAGCGCAAATCCAAAACCAC 58.135 45.000 11.47 0.00 0.00 4.16
4978 8009 9.658799 TCAATGAACCAATAAACTTTGTCAAAA 57.341 25.926 0.00 0.00 0.00 2.44
4979 8010 9.829507 ATCAATGAACCAATAAACTTTGTCAAA 57.170 25.926 0.00 0.00 0.00 2.69
4996 8027 5.335127 AGACGCTGCATTTAATCAATGAAC 58.665 37.500 0.00 0.00 44.78 3.18
5007 8038 2.622436 GTCTTAGGAGACGCTGCATTT 58.378 47.619 0.00 0.00 42.60 2.32
5050 8084 2.798283 CACGAAAAGTAGCGAGAAACCA 59.202 45.455 0.00 0.00 0.00 3.67
5093 8127 6.418057 CTTCATGAAGAAGCCTAGTAGGAT 57.582 41.667 28.13 11.40 46.54 3.24
5143 8177 4.162320 AGGTCTTGACAGAGAACTGAAACA 59.838 41.667 0.00 0.00 42.01 2.83
5185 8219 5.950544 TGTACATATGGCTAACAAGACCT 57.049 39.130 7.80 0.00 0.00 3.85
5319 8354 1.278127 GTAGGGCCACTAACAAGCTGA 59.722 52.381 6.18 0.00 32.37 4.26
5641 8677 2.272471 GAACCTACTGGGCTGGGC 59.728 66.667 0.00 0.00 39.10 5.36
5642 8678 1.208165 AAGGAACCTACTGGGCTGGG 61.208 60.000 0.00 0.00 39.10 4.45
5643 8679 0.698818 AAAGGAACCTACTGGGCTGG 59.301 55.000 0.00 0.00 39.10 4.85
5644 8680 2.586648 AAAAGGAACCTACTGGGCTG 57.413 50.000 0.00 0.00 39.10 4.85
5645 8681 3.624959 GCATAAAAGGAACCTACTGGGCT 60.625 47.826 0.00 0.00 39.10 5.19
5809 9096 0.179187 ACGCGACAGATGAAGTCTCG 60.179 55.000 15.93 4.44 46.26 4.04
5832 9119 4.035278 ACACACATTAACCAAACCGTTG 57.965 40.909 0.00 0.00 34.25 4.10
5834 9121 2.288458 CGACACACATTAACCAAACCGT 59.712 45.455 0.00 0.00 0.00 4.83
5867 9154 5.605534 AGTCAGCATATATCAACAGGACAC 58.394 41.667 0.00 0.00 0.00 3.67
6079 13115 1.069358 AGCTTAGCATTAGTCCTCGCC 59.931 52.381 7.07 0.00 0.00 5.54
6137 13174 7.537306 ACGATACAATTACAGACAATTTTGCAC 59.463 33.333 0.00 0.00 0.00 4.57
6214 13251 8.854237 ATTTTACCCCTGCCTTCTATTTTAAT 57.146 30.769 0.00 0.00 0.00 1.40
6380 13433 2.710377 CAACCGATTCATGGTTCTGGA 58.290 47.619 0.00 0.00 46.61 3.86
6412 13465 2.420269 GGTAGGCTAGAGCTGAAAACCC 60.420 54.545 0.00 0.00 41.70 4.11
6436 13490 3.141767 AGCCTCTAGTCCCAAACAAAC 57.858 47.619 0.00 0.00 0.00 2.93
6437 13491 3.876309 AAGCCTCTAGTCCCAAACAAA 57.124 42.857 0.00 0.00 0.00 2.83
6451 13505 3.584834 ACAACAACAACAACAAAGCCTC 58.415 40.909 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.