Multiple sequence alignment - TraesCS6D01G220100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G220100 chr6D 100.000 9321 0 0 1 9321 310134734 310125414 0.000000e+00 17213.0
1 TraesCS6D01G220100 chr6B 97.586 4019 59 7 894 4890 477838076 477834074 0.000000e+00 6850.0
2 TraesCS6D01G220100 chr6B 96.056 3981 89 18 4888 8831 477833993 477830044 0.000000e+00 6420.0
3 TraesCS6D01G220100 chr6B 89.881 504 20 6 8827 9320 477828076 477827594 3.700000e-173 619.0
4 TraesCS6D01G220100 chr6B 81.111 360 44 16 1 358 477862635 477862298 5.550000e-67 267.0
5 TraesCS6D01G220100 chr6B 85.882 255 28 4 356 606 477856871 477856621 2.000000e-66 265.0
6 TraesCS6D01G220100 chr6B 84.305 223 26 4 645 867 56384846 56384633 9.480000e-50 209.0
7 TraesCS6D01G220100 chr6B 84.018 219 26 5 646 864 188094013 188094222 1.590000e-47 202.0
8 TraesCS6D01G220100 chr6B 83.186 226 28 6 641 866 521511872 521511657 2.050000e-46 198.0
9 TraesCS6D01G220100 chr6B 95.833 48 1 1 589 635 477838175 477838128 1.000000e-09 76.8
10 TraesCS6D01G220100 chr6A 94.688 3012 114 12 5476 8479 446759342 446756369 0.000000e+00 4634.0
11 TraesCS6D01G220100 chr6A 95.472 2650 92 6 1946 4591 446763264 446760639 0.000000e+00 4204.0
12 TraesCS6D01G220100 chr6A 95.382 996 22 3 894 1865 446764256 446763261 0.000000e+00 1563.0
13 TraesCS6D01G220100 chr6A 95.182 768 32 5 4713 5477 446760189 446759424 0.000000e+00 1208.0
14 TraesCS6D01G220100 chr6A 86.813 637 59 15 1 635 446764921 446764308 0.000000e+00 688.0
15 TraesCS6D01G220100 chr6A 85.437 412 23 12 8924 9320 446755992 446755603 2.440000e-105 394.0
16 TraesCS6D01G220100 chr6A 93.701 127 7 1 4573 4699 446760560 446760435 1.240000e-43 189.0
17 TraesCS6D01G220100 chr6A 82.474 194 6 8 8660 8825 446756240 446756047 2.710000e-30 145.0
18 TraesCS6D01G220100 chr6A 94.118 85 5 0 8572 8656 446756368 446756284 7.600000e-26 130.0
19 TraesCS6D01G220100 chr4B 90.176 2270 192 15 2460 4708 122214530 122216789 0.000000e+00 2928.0
20 TraesCS6D01G220100 chr4B 89.295 2214 216 13 5496 7694 122218328 122220535 0.000000e+00 2756.0
21 TraesCS6D01G220100 chr4B 83.913 1610 188 26 894 2461 122212857 122214437 0.000000e+00 1472.0
22 TraesCS6D01G220100 chr4B 84.393 865 93 22 7618 8466 122220549 122221387 0.000000e+00 811.0
23 TraesCS6D01G220100 chr4B 88.636 484 40 8 4954 5425 122217214 122217694 8.120000e-160 575.0
24 TraesCS6D01G220100 chr4B 81.111 360 44 16 8946 9292 122221880 122222228 5.550000e-67 267.0
25 TraesCS6D01G220100 chr4B 84.234 222 26 4 646 867 509138981 509139193 3.410000e-49 207.0
26 TraesCS6D01G220100 chr4B 82.883 222 28 5 646 867 215638414 215638203 3.440000e-44 191.0
27 TraesCS6D01G220100 chr4B 81.982 222 30 6 646 867 205024892 205025103 7.440000e-41 180.0
28 TraesCS6D01G220100 chr4B 86.842 152 19 1 4717 4867 122217025 122217176 1.610000e-37 169.0
29 TraesCS6D01G220100 chr4B 85.714 147 12 4 646 792 315246557 315246694 7.540000e-31 147.0
30 TraesCS6D01G220100 chr4B 97.297 37 0 1 4805 4841 122217180 122217215 2.810000e-05 62.1
31 TraesCS6D01G220100 chr4A 89.771 2268 206 10 2460 4708 498694915 498697175 0.000000e+00 2880.0
32 TraesCS6D01G220100 chr4A 88.884 2213 226 11 5496 7694 498698798 498701004 0.000000e+00 2706.0
33 TraesCS6D01G220100 chr4A 86.239 1170 127 9 958 2101 498693110 498694271 0.000000e+00 1238.0
34 TraesCS6D01G220100 chr4A 84.705 863 85 25 7618 8466 498701108 498701937 0.000000e+00 819.0
35 TraesCS6D01G220100 chr4A 89.852 473 41 6 4954 5424 498697684 498698151 1.340000e-167 601.0
36 TraesCS6D01G220100 chr4A 78.772 391 45 24 8946 9321 498702440 498702807 2.620000e-55 228.0
37 TraesCS6D01G220100 chr4A 100.000 30 0 0 4812 4841 498697656 498697685 1.000000e-03 56.5
38 TraesCS6D01G220100 chr4D 89.696 2271 205 15 2460 4708 85003581 85005844 0.000000e+00 2870.0
39 TraesCS6D01G220100 chr4D 89.693 2212 209 10 5496 7694 85007816 85010021 0.000000e+00 2804.0
40 TraesCS6D01G220100 chr4D 83.901 1615 186 33 894 2461 85001912 85003499 0.000000e+00 1474.0
41 TraesCS6D01G220100 chr4D 82.168 858 101 23 7618 8466 85010125 85010939 0.000000e+00 689.0
42 TraesCS6D01G220100 chr4D 87.815 476 44 10 4954 5418 85006249 85006721 6.360000e-151 545.0
43 TraesCS6D01G220100 chr4D 77.949 390 40 26 8946 9319 85011440 85011799 1.590000e-47 202.0
44 TraesCS6D01G220100 chr4D 86.842 114 13 2 4756 4867 85006098 85006211 9.830000e-25 126.0
45 TraesCS6D01G220100 chr7A 85.268 224 22 6 645 867 350545543 350545756 4.380000e-53 220.0
46 TraesCS6D01G220100 chr3D 84.753 223 24 5 645 867 32214133 32213921 2.040000e-51 215.0
47 TraesCS6D01G220100 chr2D 84.753 223 25 4 645 867 404877096 404877309 2.040000e-51 215.0
48 TraesCS6D01G220100 chr2B 84.685 222 25 5 646 867 694214950 694214738 7.330000e-51 213.0
49 TraesCS6D01G220100 chr2B 91.803 61 4 1 9219 9279 456024111 456024170 6.000000e-12 84.2
50 TraesCS6D01G220100 chr5B 84.615 221 25 4 646 866 315707420 315707209 2.640000e-50 211.0
51 TraesCS6D01G220100 chr5B 84.305 223 24 6 646 867 327954158 327954370 3.410000e-49 207.0
52 TraesCS6D01G220100 chr5B 96.875 32 1 0 525 556 705630531 705630562 5.000000e-03 54.7
53 TraesCS6D01G220100 chr3B 84.375 224 26 4 644 867 687480894 687480680 2.640000e-50 211.0
54 TraesCS6D01G220100 chr2A 84.375 224 24 6 645 867 432431212 432430999 9.480000e-50 209.0
55 TraesCS6D01G220100 chr2A 83.556 225 23 9 645 867 432725352 432725140 2.050000e-46 198.0
56 TraesCS6D01G220100 chr2A 87.342 79 6 3 9219 9295 520308222 520308298 4.640000e-13 87.9
57 TraesCS6D01G220100 chr7B 84.018 219 26 4 646 864 656849870 656850079 1.590000e-47 202.0
58 TraesCS6D01G220100 chr7B 97.143 35 1 0 518 552 649012787 649012753 1.010000e-04 60.2
59 TraesCS6D01G220100 chr5A 83.258 221 23 9 647 865 675524243 675524451 3.440000e-44 191.0
60 TraesCS6D01G220100 chr1B 88.462 78 7 2 476 551 593917203 593917280 9.970000e-15 93.5
61 TraesCS6D01G220100 chr1D 85.000 80 9 3 475 551 438314443 438314522 2.790000e-10 78.7
62 TraesCS6D01G220100 chr7D 100.000 30 0 0 523 552 581451574 581451545 1.000000e-03 56.5
63 TraesCS6D01G220100 chr7D 100.000 28 0 0 8466 8493 540712605 540712578 1.700000e-02 52.8
64 TraesCS6D01G220100 chr3A 100.000 28 0 0 524 551 57218033 57218060 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G220100 chr6D 310125414 310134734 9320 True 17213.000000 17213 100.000000 1 9321 1 chr6D.!!$R1 9320
1 TraesCS6D01G220100 chr6B 477827594 477838175 10581 True 3491.450000 6850 94.839000 589 9320 4 chr6B.!!$R5 8731
2 TraesCS6D01G220100 chr6A 446755603 446764921 9318 True 1461.666667 4634 91.474111 1 9320 9 chr6A.!!$R1 9319
3 TraesCS6D01G220100 chr4B 122212857 122222228 9371 False 1130.012500 2928 87.707875 894 9292 8 chr4B.!!$F4 8398
4 TraesCS6D01G220100 chr4A 498693110 498702807 9697 False 1218.357143 2880 88.317571 958 9321 7 chr4A.!!$F1 8363
5 TraesCS6D01G220100 chr4D 85001912 85011799 9887 False 1244.285714 2870 85.437714 894 9319 7 chr4D.!!$F1 8425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 539 0.238289 ACGCGTTTTTGCAGGATCTG 59.762 50.000 5.58 0.0 34.15 2.90 F
1423 1459 0.237235 TTCGTGCGGCATTTCTGAAC 59.763 50.000 5.72 0.0 0.00 3.18 F
2419 2805 0.606604 GTCGGTCTGCTTCCCTTGTA 59.393 55.000 0.00 0.0 0.00 2.41 F
2421 2807 1.207089 TCGGTCTGCTTCCCTTGTATG 59.793 52.381 0.00 0.0 0.00 2.39 F
2423 2809 1.559682 GGTCTGCTTCCCTTGTATGGA 59.440 52.381 0.00 0.0 0.00 3.41 F
3312 3832 3.707316 ACCACATTCTCTCTCTACAGCT 58.293 45.455 0.00 0.0 0.00 4.24 F
3786 4306 7.746475 CCTACTTTAAATGAAGAAGCAGTTTCG 59.254 37.037 0.00 0.0 40.86 3.46 F
5251 6309 2.667348 AGGACAACCCTACAGACCG 58.333 57.895 0.00 0.0 45.48 4.79 F
7154 9259 1.595382 GTGATCGCTTCCATCCCGG 60.595 63.158 0.00 0.0 0.00 5.73 F
7458 9575 0.250338 ACGACTTCTCTTGGCAACCC 60.250 55.000 0.00 0.0 0.00 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1695 1.383248 ATCCGTCTCCCTCCCCTTG 60.383 63.158 0.00 0.00 0.00 3.61 R
2592 3112 4.070716 GGTCCTCCTCATCATTATGCTTG 58.929 47.826 0.00 0.00 32.76 4.01 R
3786 4306 1.138859 ACTTTTGGCCTGCTTGGAAAC 59.861 47.619 3.32 0.00 38.35 2.78 R
4581 5106 4.870123 TTTTGGTAGTGCTTGCATGAAT 57.130 36.364 3.33 0.00 0.00 2.57 R
4596 5222 6.667414 TGCTAAATGGGATAGAACATTTTGGT 59.333 34.615 7.78 0.00 42.78 3.67 R
5251 6309 1.273327 CCAATGTGGCTTTCAACTCCC 59.727 52.381 0.00 0.00 0.00 4.30 R
5430 6490 4.922206 TCATCTACCTTCCATTTTGCAGT 58.078 39.130 0.00 0.00 0.00 4.40 R
7244 9355 0.255318 CTCTGGGAGCTGAGGCATTT 59.745 55.000 0.00 0.00 41.70 2.32 R
8207 10526 1.132262 CTTCCCGTGCGTTGCAAATAT 59.868 47.619 0.00 0.00 41.47 1.28 R
9180 13856 1.745489 TCATCTGCTGCTGCTGCTG 60.745 57.895 27.67 26.32 40.48 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 120 2.032290 GGAGGTTTCGAGGTCGTTTTTG 60.032 50.000 0.00 0.00 40.80 2.44
122 124 1.873698 TTCGAGGTCGTTTTTGAGGG 58.126 50.000 0.00 0.00 40.80 4.30
144 146 1.571215 CCCGTAAACTGGTCAACGCC 61.571 60.000 0.00 0.00 34.13 5.68
147 149 0.600782 GTAAACTGGTCAACGCCGGA 60.601 55.000 5.05 0.00 38.27 5.14
211 213 2.982643 AATGGCCATCCGGAGTGCA 61.983 57.895 21.08 13.79 34.14 4.57
221 223 4.479993 GGAGTGCAGCCGGAGCAT 62.480 66.667 22.35 12.79 44.79 3.79
222 224 3.200593 GAGTGCAGCCGGAGCATG 61.201 66.667 22.35 8.43 44.79 4.06
324 326 1.322338 GCGATTACGTGCGTGTGTTAT 59.678 47.619 7.55 0.00 41.98 1.89
329 331 2.478746 GTGCGTGTGTTATGGCCG 59.521 61.111 0.00 0.00 0.00 6.13
376 378 2.506438 GGCCGGAGTTCGAGTTCG 60.506 66.667 5.05 0.00 42.43 3.95
382 384 1.325647 GGAGTTCGAGTTCGTTCGTC 58.674 55.000 1.07 0.00 41.22 4.20
388 390 2.704193 GAGTTCGTTCGTCCGTGCG 61.704 63.158 0.00 0.00 0.00 5.34
390 392 2.278726 TTCGTTCGTCCGTGCGTT 60.279 55.556 5.84 0.00 0.00 4.84
406 408 3.185797 GTGCGTTACGTGGAAGAAGAAAT 59.814 43.478 6.63 0.00 0.00 2.17
410 412 4.377022 CGTTACGTGGAAGAAGAAATGTGG 60.377 45.833 0.00 0.00 0.00 4.17
424 426 5.705400 AGAAATGTGGGGAGAAAAAGAAGA 58.295 37.500 0.00 0.00 0.00 2.87
479 481 4.805231 CGATGCCGCACGGTACCA 62.805 66.667 13.54 0.40 37.65 3.25
500 502 5.005094 CCACAAATTCGTTTTAGGGACCTA 58.995 41.667 0.00 0.00 0.00 3.08
537 539 0.238289 ACGCGTTTTTGCAGGATCTG 59.762 50.000 5.58 0.00 34.15 2.90
552 554 3.888930 AGGATCTGCTAGAGTTGCTCTAC 59.111 47.826 0.00 1.77 41.50 2.59
554 556 3.087370 TCTGCTAGAGTTGCTCTACCA 57.913 47.619 0.00 2.27 41.50 3.25
646 648 0.952010 TTTTTAGAGGCACCGACGGC 60.952 55.000 15.39 0.00 0.00 5.68
655 657 3.868985 ACCGACGGCCCTGTTTGT 61.869 61.111 15.39 0.00 0.00 2.83
656 658 2.593436 CCGACGGCCCTGTTTGTT 60.593 61.111 0.00 0.00 0.00 2.83
657 659 2.190841 CCGACGGCCCTGTTTGTTT 61.191 57.895 0.00 0.00 0.00 2.83
660 662 0.310854 GACGGCCCTGTTTGTTTCAG 59.689 55.000 0.00 0.00 0.00 3.02
662 664 1.455383 CGGCCCTGTTTGTTTCAGCT 61.455 55.000 0.00 0.00 0.00 4.24
666 668 1.600413 CCCTGTTTGTTTCAGCTTCGC 60.600 52.381 0.00 0.00 0.00 4.70
667 669 1.334869 CCTGTTTGTTTCAGCTTCGCT 59.665 47.619 0.00 0.00 40.77 4.93
668 670 2.223572 CCTGTTTGTTTCAGCTTCGCTT 60.224 45.455 0.00 0.00 36.40 4.68
670 672 2.119457 GTTTGTTTCAGCTTCGCTTGG 58.881 47.619 0.00 0.00 36.40 3.61
672 674 1.896220 TGTTTCAGCTTCGCTTGGAT 58.104 45.000 0.00 0.00 36.40 3.41
674 676 3.407698 TGTTTCAGCTTCGCTTGGATTA 58.592 40.909 0.00 0.00 36.40 1.75
678 680 5.643379 TTCAGCTTCGCTTGGATTAAAAT 57.357 34.783 0.00 0.00 36.40 1.82
680 682 4.699735 TCAGCTTCGCTTGGATTAAAATCA 59.300 37.500 5.15 0.00 36.40 2.57
681 683 4.795278 CAGCTTCGCTTGGATTAAAATCAC 59.205 41.667 5.15 0.00 36.40 3.06
682 684 4.105486 GCTTCGCTTGGATTAAAATCACC 58.895 43.478 5.15 0.00 37.15 4.02
683 685 4.142381 GCTTCGCTTGGATTAAAATCACCT 60.142 41.667 5.15 0.00 37.15 4.00
684 686 5.065988 GCTTCGCTTGGATTAAAATCACCTA 59.934 40.000 5.15 0.00 37.15 3.08
685 687 6.404293 GCTTCGCTTGGATTAAAATCACCTAA 60.404 38.462 5.15 0.00 37.15 2.69
686 688 6.677781 TCGCTTGGATTAAAATCACCTAAG 57.322 37.500 5.15 5.03 37.15 2.18
687 689 5.588648 TCGCTTGGATTAAAATCACCTAAGG 59.411 40.000 5.15 0.00 37.15 2.69
688 690 5.588648 CGCTTGGATTAAAATCACCTAAGGA 59.411 40.000 5.15 0.00 37.15 3.36
689 691 6.263168 CGCTTGGATTAAAATCACCTAAGGAT 59.737 38.462 5.15 0.00 37.15 3.24
690 692 7.201821 CGCTTGGATTAAAATCACCTAAGGATT 60.202 37.037 5.15 0.00 37.15 3.01
691 693 8.138074 GCTTGGATTAAAATCACCTAAGGATTC 58.862 37.037 5.15 0.00 37.15 2.52
692 694 9.189156 CTTGGATTAAAATCACCTAAGGATTCA 57.811 33.333 5.15 0.00 37.15 2.57
693 695 8.519799 TGGATTAAAATCACCTAAGGATTCAC 57.480 34.615 5.15 0.00 37.15 3.18
694 696 8.336235 TGGATTAAAATCACCTAAGGATTCACT 58.664 33.333 5.15 0.00 37.15 3.41
695 697 9.190317 GGATTAAAATCACCTAAGGATTCACTT 57.810 33.333 5.15 0.00 37.15 3.16
697 699 9.753674 ATTAAAATCACCTAAGGATTCACTTCA 57.246 29.630 0.00 0.00 34.02 3.02
698 700 7.693969 AAAATCACCTAAGGATTCACTTCAG 57.306 36.000 0.00 0.00 34.02 3.02
699 701 6.380079 AATCACCTAAGGATTCACTTCAGT 57.620 37.500 0.00 0.00 29.18 3.41
700 702 5.152623 TCACCTAAGGATTCACTTCAGTG 57.847 43.478 0.02 0.02 46.91 3.66
701 703 4.593206 TCACCTAAGGATTCACTTCAGTGT 59.407 41.667 6.84 0.00 45.76 3.55
702 704 4.932200 CACCTAAGGATTCACTTCAGTGTC 59.068 45.833 6.84 0.00 45.76 3.67
703 705 4.593206 ACCTAAGGATTCACTTCAGTGTCA 59.407 41.667 6.84 0.00 45.76 3.58
704 706 5.071788 ACCTAAGGATTCACTTCAGTGTCAA 59.928 40.000 6.84 0.00 45.76 3.18
705 707 5.997746 CCTAAGGATTCACTTCAGTGTCAAA 59.002 40.000 6.84 0.00 45.76 2.69
706 708 6.148480 CCTAAGGATTCACTTCAGTGTCAAAG 59.852 42.308 6.84 0.00 45.76 2.77
707 709 3.817647 AGGATTCACTTCAGTGTCAAAGC 59.182 43.478 6.84 0.00 45.76 3.51
708 710 3.817647 GGATTCACTTCAGTGTCAAAGCT 59.182 43.478 6.84 0.00 45.76 3.74
709 711 4.320057 GGATTCACTTCAGTGTCAAAGCTG 60.320 45.833 6.84 0.00 45.76 4.24
710 712 3.541996 TCACTTCAGTGTCAAAGCTGA 57.458 42.857 6.84 0.00 45.76 4.26
711 713 4.077300 TCACTTCAGTGTCAAAGCTGAT 57.923 40.909 6.84 0.00 45.76 2.90
712 714 4.454678 TCACTTCAGTGTCAAAGCTGATT 58.545 39.130 6.84 0.00 45.76 2.57
713 715 4.883585 TCACTTCAGTGTCAAAGCTGATTT 59.116 37.500 6.84 0.00 45.76 2.17
714 716 5.357878 TCACTTCAGTGTCAAAGCTGATTTT 59.642 36.000 6.84 0.00 45.76 1.82
715 717 5.457799 CACTTCAGTGTCAAAGCTGATTTTG 59.542 40.000 0.00 0.00 40.83 2.44
716 718 3.968649 TCAGTGTCAAAGCTGATTTTGC 58.031 40.909 0.00 0.00 37.83 3.68
717 719 2.722629 CAGTGTCAAAGCTGATTTTGCG 59.277 45.455 0.00 0.00 37.83 4.85
718 720 2.618241 AGTGTCAAAGCTGATTTTGCGA 59.382 40.909 0.00 0.00 37.83 5.10
719 721 3.066621 AGTGTCAAAGCTGATTTTGCGAA 59.933 39.130 0.00 0.00 37.83 4.70
720 722 3.983344 GTGTCAAAGCTGATTTTGCGAAT 59.017 39.130 0.00 0.00 37.83 3.34
721 723 4.089065 GTGTCAAAGCTGATTTTGCGAATC 59.911 41.667 5.85 5.85 37.83 2.52
722 724 4.229096 GTCAAAGCTGATTTTGCGAATCA 58.771 39.130 12.89 12.89 37.83 2.57
727 729 3.752412 CTGATTTTGCGAATCAGCTGA 57.248 42.857 20.79 20.79 44.67 4.26
728 730 4.087510 CTGATTTTGCGAATCAGCTGAA 57.912 40.909 22.50 0.00 44.67 3.02
729 731 4.669318 CTGATTTTGCGAATCAGCTGAAT 58.331 39.130 22.50 13.38 44.67 2.57
730 732 4.665212 TGATTTTGCGAATCAGCTGAATC 58.335 39.130 22.50 21.08 38.42 2.52
731 733 4.156373 TGATTTTGCGAATCAGCTGAATCA 59.844 37.500 27.07 21.30 41.67 2.57
732 734 3.752412 TTTGCGAATCAGCTGAATCAG 57.248 42.857 27.07 20.59 38.13 2.90
744 746 2.995283 CTGAATCAGCTTCACCATGGA 58.005 47.619 21.47 0.00 38.97 3.41
745 747 3.349927 CTGAATCAGCTTCACCATGGAA 58.650 45.455 21.47 1.53 38.97 3.53
746 748 3.349927 TGAATCAGCTTCACCATGGAAG 58.650 45.455 21.47 13.86 45.58 3.46
747 749 3.245016 TGAATCAGCTTCACCATGGAAGT 60.245 43.478 21.47 0.00 44.81 3.01
748 750 4.019411 TGAATCAGCTTCACCATGGAAGTA 60.019 41.667 21.47 3.39 44.81 2.24
749 751 3.334583 TCAGCTTCACCATGGAAGTAC 57.665 47.619 21.47 4.67 44.81 2.73
750 752 2.637382 TCAGCTTCACCATGGAAGTACA 59.363 45.455 21.47 0.00 44.81 2.90
751 753 2.744202 CAGCTTCACCATGGAAGTACAC 59.256 50.000 21.47 1.17 44.81 2.90
752 754 2.639839 AGCTTCACCATGGAAGTACACT 59.360 45.455 21.47 3.69 44.81 3.55
753 755 3.073062 AGCTTCACCATGGAAGTACACTT 59.927 43.478 21.47 0.00 44.81 3.16
754 756 3.821033 GCTTCACCATGGAAGTACACTTT 59.179 43.478 21.47 0.00 44.81 2.66
755 757 4.320494 GCTTCACCATGGAAGTACACTTTG 60.320 45.833 21.47 1.56 44.81 2.77
756 758 4.698201 TCACCATGGAAGTACACTTTGA 57.302 40.909 21.47 4.34 36.11 2.69
757 759 4.641396 TCACCATGGAAGTACACTTTGAG 58.359 43.478 21.47 0.00 36.11 3.02
758 760 3.753272 CACCATGGAAGTACACTTTGAGG 59.247 47.826 21.47 0.31 36.11 3.86
759 761 3.394606 ACCATGGAAGTACACTTTGAGGT 59.605 43.478 21.47 0.87 36.11 3.85
760 762 3.753272 CCATGGAAGTACACTTTGAGGTG 59.247 47.826 5.56 0.00 42.34 4.00
762 764 4.497291 TGGAAGTACACTTTGAGGTGTT 57.503 40.909 4.18 0.00 46.71 3.32
763 765 4.850680 TGGAAGTACACTTTGAGGTGTTT 58.149 39.130 4.18 0.00 46.71 2.83
764 766 4.879545 TGGAAGTACACTTTGAGGTGTTTC 59.120 41.667 4.18 3.81 46.71 2.78
765 767 4.879545 GGAAGTACACTTTGAGGTGTTTCA 59.120 41.667 4.18 0.00 46.71 2.69
766 768 5.007724 GGAAGTACACTTTGAGGTGTTTCAG 59.992 44.000 4.18 0.00 46.71 3.02
767 769 5.353394 AGTACACTTTGAGGTGTTTCAGA 57.647 39.130 4.18 0.00 46.71 3.27
768 770 5.741011 AGTACACTTTGAGGTGTTTCAGAA 58.259 37.500 4.18 0.00 46.71 3.02
769 771 6.177610 AGTACACTTTGAGGTGTTTCAGAAA 58.822 36.000 4.18 0.00 46.71 2.52
770 772 5.567138 ACACTTTGAGGTGTTTCAGAAAG 57.433 39.130 0.00 0.00 46.71 2.62
771 773 5.010282 ACACTTTGAGGTGTTTCAGAAAGT 58.990 37.500 0.00 0.00 46.71 2.66
772 774 5.476945 ACACTTTGAGGTGTTTCAGAAAGTT 59.523 36.000 0.00 0.00 46.71 2.66
773 775 5.801947 CACTTTGAGGTGTTTCAGAAAGTTG 59.198 40.000 0.00 0.00 29.90 3.16
774 776 4.370364 TTGAGGTGTTTCAGAAAGTTGC 57.630 40.909 0.00 0.00 0.00 4.17
775 777 3.351740 TGAGGTGTTTCAGAAAGTTGCA 58.648 40.909 0.00 0.00 0.00 4.08
776 778 3.128589 TGAGGTGTTTCAGAAAGTTGCAC 59.871 43.478 0.00 1.03 0.00 4.57
777 779 3.356290 AGGTGTTTCAGAAAGTTGCACT 58.644 40.909 11.95 0.00 0.00 4.40
778 780 4.523083 AGGTGTTTCAGAAAGTTGCACTA 58.477 39.130 11.95 0.00 0.00 2.74
779 781 4.947388 AGGTGTTTCAGAAAGTTGCACTAA 59.053 37.500 11.95 0.00 0.00 2.24
780 782 5.417580 AGGTGTTTCAGAAAGTTGCACTAAA 59.582 36.000 11.95 0.00 0.00 1.85
781 783 6.071616 AGGTGTTTCAGAAAGTTGCACTAAAA 60.072 34.615 11.95 0.00 0.00 1.52
782 784 6.588373 GGTGTTTCAGAAAGTTGCACTAAAAA 59.412 34.615 11.95 0.00 0.00 1.94
783 785 7.277760 GGTGTTTCAGAAAGTTGCACTAAAAAT 59.722 33.333 11.95 0.00 0.00 1.82
784 786 8.110002 GTGTTTCAGAAAGTTGCACTAAAAATG 58.890 33.333 0.00 0.00 0.00 2.32
785 787 7.277539 TGTTTCAGAAAGTTGCACTAAAAATGG 59.722 33.333 0.00 0.00 0.00 3.16
786 788 5.288804 TCAGAAAGTTGCACTAAAAATGGC 58.711 37.500 0.00 0.00 0.00 4.40
787 789 4.448732 CAGAAAGTTGCACTAAAAATGGCC 59.551 41.667 0.00 0.00 0.00 5.36
788 790 3.401033 AAGTTGCACTAAAAATGGCCC 57.599 42.857 0.00 0.00 0.00 5.80
789 791 2.324541 AGTTGCACTAAAAATGGCCCA 58.675 42.857 0.00 0.00 0.00 5.36
790 792 2.703007 AGTTGCACTAAAAATGGCCCAA 59.297 40.909 0.00 0.00 0.00 4.12
791 793 3.135530 AGTTGCACTAAAAATGGCCCAAA 59.864 39.130 0.00 0.00 0.00 3.28
792 794 3.399440 TGCACTAAAAATGGCCCAAAG 57.601 42.857 0.00 0.00 0.00 2.77
793 795 2.703007 TGCACTAAAAATGGCCCAAAGT 59.297 40.909 0.00 0.00 0.00 2.66
794 796 3.244044 TGCACTAAAAATGGCCCAAAGTC 60.244 43.478 0.00 0.00 0.00 3.01
795 797 3.244044 GCACTAAAAATGGCCCAAAGTCA 60.244 43.478 0.00 0.00 0.00 3.41
796 798 4.559153 CACTAAAAATGGCCCAAAGTCAG 58.441 43.478 0.00 0.00 0.00 3.51
797 799 4.280677 CACTAAAAATGGCCCAAAGTCAGA 59.719 41.667 0.00 0.00 0.00 3.27
798 800 5.047092 CACTAAAAATGGCCCAAAGTCAGAT 60.047 40.000 0.00 0.00 0.00 2.90
799 801 4.980339 AAAAATGGCCCAAAGTCAGATT 57.020 36.364 0.00 0.00 0.00 2.40
800 802 4.541973 AAAATGGCCCAAAGTCAGATTC 57.458 40.909 0.00 0.00 0.00 2.52
801 803 2.905415 ATGGCCCAAAGTCAGATTCA 57.095 45.000 0.00 0.00 0.00 2.57
802 804 2.205022 TGGCCCAAAGTCAGATTCAG 57.795 50.000 0.00 0.00 0.00 3.02
803 805 0.813821 GGCCCAAAGTCAGATTCAGC 59.186 55.000 0.00 0.00 0.00 4.26
804 806 1.615384 GGCCCAAAGTCAGATTCAGCT 60.615 52.381 0.00 0.00 0.00 4.24
805 807 2.165998 GCCCAAAGTCAGATTCAGCTT 58.834 47.619 0.00 0.00 0.00 3.74
806 808 2.163211 GCCCAAAGTCAGATTCAGCTTC 59.837 50.000 0.00 0.00 0.00 3.86
807 809 3.415212 CCCAAAGTCAGATTCAGCTTCA 58.585 45.455 0.00 0.00 0.00 3.02
808 810 3.190118 CCCAAAGTCAGATTCAGCTTCAC 59.810 47.826 0.00 0.00 0.00 3.18
809 811 4.070716 CCAAAGTCAGATTCAGCTTCACT 58.929 43.478 0.00 0.00 0.00 3.41
817 819 4.959446 CAGCTTCACTGGCAAAGC 57.041 55.556 13.23 13.23 46.52 3.51
819 821 4.959446 GCTTCACTGGCAAAGCTG 57.041 55.556 13.71 0.00 43.57 4.24
820 822 2.334307 GCTTCACTGGCAAAGCTGA 58.666 52.632 13.71 0.00 43.57 4.26
821 823 0.886563 GCTTCACTGGCAAAGCTGAT 59.113 50.000 13.71 0.00 43.57 2.90
822 824 1.271656 GCTTCACTGGCAAAGCTGATT 59.728 47.619 13.71 0.00 43.57 2.57
823 825 2.670509 GCTTCACTGGCAAAGCTGATTC 60.671 50.000 13.71 0.00 43.57 2.52
824 826 2.574006 TCACTGGCAAAGCTGATTCT 57.426 45.000 0.00 0.00 0.00 2.40
825 827 3.701205 TCACTGGCAAAGCTGATTCTA 57.299 42.857 0.00 0.00 0.00 2.10
826 828 4.019792 TCACTGGCAAAGCTGATTCTAA 57.980 40.909 0.00 0.00 0.00 2.10
827 829 4.397420 TCACTGGCAAAGCTGATTCTAAA 58.603 39.130 0.00 0.00 0.00 1.85
828 830 5.012239 TCACTGGCAAAGCTGATTCTAAAT 58.988 37.500 0.00 0.00 0.00 1.40
829 831 6.179756 TCACTGGCAAAGCTGATTCTAAATA 58.820 36.000 0.00 0.00 0.00 1.40
830 832 6.317140 TCACTGGCAAAGCTGATTCTAAATAG 59.683 38.462 0.00 0.00 0.00 1.73
831 833 5.067023 ACTGGCAAAGCTGATTCTAAATAGC 59.933 40.000 0.00 0.00 36.45 2.97
832 834 4.339247 TGGCAAAGCTGATTCTAAATAGCC 59.661 41.667 0.00 0.00 36.86 3.93
833 835 4.531332 GCAAAGCTGATTCTAAATAGCCG 58.469 43.478 0.00 0.00 36.86 5.52
834 836 4.035675 GCAAAGCTGATTCTAAATAGCCGT 59.964 41.667 0.00 0.00 36.86 5.68
835 837 5.449177 GCAAAGCTGATTCTAAATAGCCGTT 60.449 40.000 0.00 0.00 36.86 4.44
836 838 6.555315 CAAAGCTGATTCTAAATAGCCGTTT 58.445 36.000 0.00 0.00 36.86 3.60
837 839 7.678690 GCAAAGCTGATTCTAAATAGCCGTTTA 60.679 37.037 0.00 0.00 36.86 2.01
838 840 8.345565 CAAAGCTGATTCTAAATAGCCGTTTAT 58.654 33.333 0.00 0.00 36.86 1.40
839 841 8.451908 AAGCTGATTCTAAATAGCCGTTTATT 57.548 30.769 0.00 0.00 36.86 1.40
840 842 8.451908 AGCTGATTCTAAATAGCCGTTTATTT 57.548 30.769 0.00 6.62 37.14 1.40
841 843 8.560374 AGCTGATTCTAAATAGCCGTTTATTTC 58.440 33.333 5.08 0.00 35.47 2.17
842 844 8.342634 GCTGATTCTAAATAGCCGTTTATTTCA 58.657 33.333 5.08 0.00 35.47 2.69
851 853 9.921637 AAATAGCCGTTTATTTCAAATTTCAGA 57.078 25.926 0.00 0.00 29.49 3.27
854 856 8.466086 AGCCGTTTATTTCAAATTTCAGATTC 57.534 30.769 0.00 0.00 0.00 2.52
855 857 8.087750 AGCCGTTTATTTCAAATTTCAGATTCA 58.912 29.630 0.00 0.00 0.00 2.57
856 858 8.707839 GCCGTTTATTTCAAATTTCAGATTCAA 58.292 29.630 0.00 0.00 0.00 2.69
864 866 8.861033 TTCAAATTTCAGATTCAACTTCACTG 57.139 30.769 0.00 0.00 0.00 3.66
865 867 7.428020 TCAAATTTCAGATTCAACTTCACTGG 58.572 34.615 0.00 0.00 0.00 4.00
866 868 4.836125 TTTCAGATTCAACTTCACTGGC 57.164 40.909 0.00 0.00 0.00 4.85
867 869 3.777106 TCAGATTCAACTTCACTGGCT 57.223 42.857 0.00 0.00 0.00 4.75
868 870 3.405831 TCAGATTCAACTTCACTGGCTG 58.594 45.455 0.00 0.00 0.00 4.85
869 871 2.095364 CAGATTCAACTTCACTGGCTGC 60.095 50.000 0.00 0.00 0.00 5.25
870 872 2.157738 GATTCAACTTCACTGGCTGCT 58.842 47.619 0.00 0.00 0.00 4.24
871 873 1.597742 TTCAACTTCACTGGCTGCTC 58.402 50.000 0.00 0.00 0.00 4.26
872 874 0.250467 TCAACTTCACTGGCTGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
873 875 1.073897 AACTTCACTGGCTGCTCCC 59.926 57.895 0.00 0.00 0.00 4.30
874 876 1.422161 AACTTCACTGGCTGCTCCCT 61.422 55.000 0.00 0.00 0.00 4.20
875 877 1.376942 CTTCACTGGCTGCTCCCTG 60.377 63.158 0.00 0.00 0.00 4.45
876 878 1.834856 CTTCACTGGCTGCTCCCTGA 61.835 60.000 0.00 0.00 0.00 3.86
877 879 1.418097 TTCACTGGCTGCTCCCTGAA 61.418 55.000 0.00 0.00 31.55 3.02
878 880 1.376942 CACTGGCTGCTCCCTGAAG 60.377 63.158 0.00 0.00 0.00 3.02
879 881 2.438075 CTGGCTGCTCCCTGAAGC 60.438 66.667 0.00 0.00 46.76 3.86
880 882 2.932194 TGGCTGCTCCCTGAAGCT 60.932 61.111 0.00 0.00 46.67 3.74
881 883 2.438075 GGCTGCTCCCTGAAGCTG 60.438 66.667 0.00 0.00 46.67 4.24
882 884 2.667418 GCTGCTCCCTGAAGCTGA 59.333 61.111 6.91 0.00 44.07 4.26
883 885 1.002868 GCTGCTCCCTGAAGCTGAA 60.003 57.895 6.91 0.00 44.07 3.02
884 886 0.607489 GCTGCTCCCTGAAGCTGAAA 60.607 55.000 6.91 0.00 44.07 2.69
885 887 1.163554 CTGCTCCCTGAAGCTGAAAC 58.836 55.000 0.00 0.00 42.07 2.78
886 888 0.473755 TGCTCCCTGAAGCTGAAACA 59.526 50.000 0.00 0.00 42.94 2.83
887 889 1.133823 TGCTCCCTGAAGCTGAAACAA 60.134 47.619 0.00 0.00 42.94 2.83
888 890 1.956477 GCTCCCTGAAGCTGAAACAAA 59.044 47.619 0.00 0.00 39.27 2.83
889 891 2.287849 GCTCCCTGAAGCTGAAACAAAC 60.288 50.000 0.00 0.00 39.27 2.93
890 892 2.951642 CTCCCTGAAGCTGAAACAAACA 59.048 45.455 0.00 0.00 0.00 2.83
891 893 2.951642 TCCCTGAAGCTGAAACAAACAG 59.048 45.455 0.00 0.00 38.27 3.16
892 894 2.035066 CCCTGAAGCTGAAACAAACAGG 59.965 50.000 0.00 0.00 41.79 4.00
914 916 2.662596 CAGGCCAGAGCACGGTAA 59.337 61.111 5.01 0.00 42.56 2.85
1103 1136 1.812113 TTCCCTCCTCTTCCCGTCCT 61.812 60.000 0.00 0.00 0.00 3.85
1423 1459 0.237235 TTCGTGCGGCATTTCTGAAC 59.763 50.000 5.72 0.00 0.00 3.18
1601 1642 6.001449 CCCCCTCTTTTCATGTAACATCTA 57.999 41.667 0.00 0.00 0.00 1.98
1604 1645 6.488006 CCCCTCTTTTCATGTAACATCTATGG 59.512 42.308 0.00 0.00 0.00 2.74
1654 1695 1.272114 CGAGATTAGCCGCGAGAAGC 61.272 60.000 8.23 1.15 43.95 3.86
1765 1806 4.992688 TCAATTGTGTTGTGACTGTTTCC 58.007 39.130 5.13 0.00 0.00 3.13
2045 2185 9.005777 GTGAAAATCCACTTGGTACTTTACATA 57.994 33.333 0.00 0.00 36.34 2.29
2419 2805 0.606604 GTCGGTCTGCTTCCCTTGTA 59.393 55.000 0.00 0.00 0.00 2.41
2420 2806 1.207329 GTCGGTCTGCTTCCCTTGTAT 59.793 52.381 0.00 0.00 0.00 2.29
2421 2807 1.207089 TCGGTCTGCTTCCCTTGTATG 59.793 52.381 0.00 0.00 0.00 2.39
2422 2808 1.743772 CGGTCTGCTTCCCTTGTATGG 60.744 57.143 0.00 0.00 0.00 2.74
2423 2809 1.559682 GGTCTGCTTCCCTTGTATGGA 59.440 52.381 0.00 0.00 0.00 3.41
2437 2823 7.676893 TCCCTTGTATGGAGTAGTTCTCTTAAA 59.323 37.037 0.00 0.00 42.40 1.52
2532 3052 9.208022 GATTTCATTGATATTGACACCGAGATA 57.792 33.333 0.00 0.00 0.00 1.98
2942 3462 5.456330 AGATGGATCTTGTGAGGATCAATGG 60.456 44.000 0.00 0.00 40.07 3.16
3148 3668 6.861065 AAGACGACTTTTATCAAGCAAGAA 57.139 33.333 0.00 0.00 31.71 2.52
3307 3827 4.467795 CCCTGAAACCACATTCTCTCTCTA 59.532 45.833 0.00 0.00 0.00 2.43
3312 3832 3.707316 ACCACATTCTCTCTCTACAGCT 58.293 45.455 0.00 0.00 0.00 4.24
3786 4306 7.746475 CCTACTTTAAATGAAGAAGCAGTTTCG 59.254 37.037 0.00 0.00 40.86 3.46
4623 5249 7.869429 CCAAAATGTTCTATCCCATTTAGCATC 59.131 37.037 0.00 0.00 39.65 3.91
5251 6309 2.667348 AGGACAACCCTACAGACCG 58.333 57.895 0.00 0.00 45.48 4.79
5430 6490 6.105333 GCACATGTTAAATATGAAAGGCCAA 58.895 36.000 5.01 0.00 0.00 4.52
5525 7627 7.750458 TCTCACTTAAATTTGCAGAAATAAGCG 59.250 33.333 0.00 4.25 31.18 4.68
6525 8630 5.048013 GGTAATTGGTTTTGAACTCCTGAGG 60.048 44.000 0.00 0.00 0.00 3.86
7154 9259 1.595382 GTGATCGCTTCCATCCCGG 60.595 63.158 0.00 0.00 0.00 5.73
7182 9287 2.685850 ACCGATTGCCTGGTAACTAC 57.314 50.000 0.00 0.00 36.50 2.73
7194 9305 4.866486 CCTGGTAACTACGTGGAACATAAC 59.134 45.833 5.70 0.00 38.25 1.89
7195 9306 5.465532 TGGTAACTACGTGGAACATAACA 57.534 39.130 5.70 0.00 38.25 2.41
7196 9307 5.851720 TGGTAACTACGTGGAACATAACAA 58.148 37.500 5.70 0.00 38.25 2.83
7200 9311 5.856126 ACTACGTGGAACATAACAATGTG 57.144 39.130 5.70 0.00 44.52 3.21
7351 9462 5.574055 CACGATATTGATGCAATAATTGGCC 59.426 40.000 0.00 0.00 39.34 5.36
7458 9575 0.250338 ACGACTTCTCTTGGCAACCC 60.250 55.000 0.00 0.00 0.00 4.11
7500 9617 0.517316 CCAAAGACTCTTTTCCCGCG 59.483 55.000 0.00 0.00 0.00 6.46
7513 9630 2.753966 CCCGCGAGCAAACCATCAG 61.754 63.158 8.23 0.00 0.00 2.90
7518 9635 1.941209 GCGAGCAAACCATCAGTCAGA 60.941 52.381 0.00 0.00 0.00 3.27
7527 9644 6.150140 GCAAACCATCAGTCAGAAGAACTTAT 59.850 38.462 0.00 0.00 0.00 1.73
7535 9652 8.815565 TCAGTCAGAAGAACTTATAGTCATCT 57.184 34.615 0.00 0.00 0.00 2.90
7629 9935 0.537371 GGAAGGGTGGGGATATTGCG 60.537 60.000 0.00 0.00 0.00 4.85
7806 10112 4.653806 AATGAACGAGAAAAGAAGAGCG 57.346 40.909 0.00 0.00 0.00 5.03
7809 10115 1.057976 CGAGAAAAGAAGAGCGCGC 59.942 57.895 26.66 26.66 0.00 6.86
7883 10189 2.428530 GGGATGGTGCTTCAAAGATTCC 59.571 50.000 0.00 0.00 0.00 3.01
7902 10208 2.838202 TCCAAGTCCTCCACCTATTGAC 59.162 50.000 0.00 0.00 0.00 3.18
8120 10426 2.425312 ACAAGAGAGCGAGACAGGTATG 59.575 50.000 0.00 0.00 0.00 2.39
8124 10432 0.457851 GAGCGAGACAGGTATGTGCT 59.542 55.000 0.00 0.00 40.68 4.40
8125 10433 1.676529 GAGCGAGACAGGTATGTGCTA 59.323 52.381 0.00 0.00 40.68 3.49
8126 10434 2.099263 GAGCGAGACAGGTATGTGCTAA 59.901 50.000 0.00 0.00 40.68 3.09
8127 10435 2.159226 AGCGAGACAGGTATGTGCTAAC 60.159 50.000 0.00 0.00 40.68 2.34
8128 10436 2.416836 GCGAGACAGGTATGTGCTAACA 60.417 50.000 0.00 0.00 40.68 2.41
8129 10437 3.439293 CGAGACAGGTATGTGCTAACAG 58.561 50.000 0.00 0.00 40.68 3.16
8207 10526 5.129634 TGGATGAGTTTGTGCAGAAACTTA 58.870 37.500 34.33 31.26 44.46 2.24
8332 10651 6.316513 AGAAGGTATGTAGATTAGAGGTCCC 58.683 44.000 0.00 0.00 0.00 4.46
8489 10820 4.753186 ACTCCCTCCGATCCATAATAAGT 58.247 43.478 0.00 0.00 0.00 2.24
8498 10829 8.165239 TCCGATCCATAATAAGTTTTTGGATG 57.835 34.615 12.92 7.28 35.14 3.51
8514 10845 5.633473 TTGGATGGGAGGGAGTAGTATAT 57.367 43.478 0.00 0.00 0.00 0.86
8600 10937 3.554752 GGTGTCATTTGTCCACCATTTGG 60.555 47.826 13.56 0.00 46.33 3.28
8682 11268 5.248248 TGATTGTACTGAAAGATGTCTCCCA 59.752 40.000 0.00 0.00 37.43 4.37
8750 11350 6.532302 CACTATGTTGGCATTACGTACTGTTA 59.468 38.462 13.66 1.84 36.58 2.41
8751 11351 7.063662 CACTATGTTGGCATTACGTACTGTTAA 59.936 37.037 13.66 7.18 36.58 2.01
8752 11352 6.995511 ATGTTGGCATTACGTACTGTTAAT 57.004 33.333 13.66 0.00 29.54 1.40
8755 11355 5.804692 TGGCATTACGTACTGTTAATTGG 57.195 39.130 13.66 0.00 0.00 3.16
8756 11356 5.489249 TGGCATTACGTACTGTTAATTGGA 58.511 37.500 13.66 0.00 0.00 3.53
8847 13481 4.556104 CGTAAGACTCAACTTCTCGAACCA 60.556 45.833 0.00 0.00 43.02 3.67
8880 13514 1.403679 GAGTCGACTATCTGCACTGCT 59.596 52.381 20.09 0.00 0.00 4.24
8881 13515 1.403679 AGTCGACTATCTGCACTGCTC 59.596 52.381 18.46 0.00 0.00 4.26
8882 13516 0.378610 TCGACTATCTGCACTGCTCG 59.621 55.000 1.98 2.31 0.00 5.03
8883 13517 0.099613 CGACTATCTGCACTGCTCGT 59.900 55.000 1.98 0.00 0.00 4.18
8884 13518 1.833860 GACTATCTGCACTGCTCGTC 58.166 55.000 1.98 0.00 0.00 4.20
8885 13519 1.133216 GACTATCTGCACTGCTCGTCA 59.867 52.381 1.98 0.00 0.00 4.35
8911 13545 0.797249 GAATCCGACACCGACTCGTG 60.797 60.000 0.00 0.00 39.75 4.35
8917 13551 0.575390 GACACCGACTCGTGTTTGTG 59.425 55.000 14.84 14.84 46.85 3.33
9011 13663 1.849219 GTCGAGCTACATCGCTTCAAG 59.151 52.381 0.00 0.00 41.08 3.02
9203 13885 2.435410 CAGCAGCAGATGACGCCA 60.435 61.111 0.00 0.00 31.30 5.69
9206 13888 2.747822 GCAGCAGATGACGCCACAG 61.748 63.158 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 0.981943 ATATACGGGGGCCTGTAAGC 59.018 55.000 0.84 0.00 40.65 3.09
55 57 4.141779 GGATAATATACGGGGGCCTGTAAG 60.142 50.000 0.84 0.00 40.65 2.34
57 59 3.377573 GGATAATATACGGGGGCCTGTA 58.622 50.000 0.84 7.60 41.40 2.74
58 60 2.193993 GGATAATATACGGGGGCCTGT 58.806 52.381 0.84 5.23 39.18 4.00
59 61 1.489230 GGGATAATATACGGGGGCCTG 59.511 57.143 0.84 0.00 0.00 4.85
60 62 1.627195 GGGGATAATATACGGGGGCCT 60.627 57.143 0.84 0.00 0.00 5.19
62 64 1.889174 AGGGGATAATATACGGGGGC 58.111 55.000 0.00 0.00 0.00 5.80
63 65 3.998279 TGTAGGGGATAATATACGGGGG 58.002 50.000 0.00 0.00 0.00 5.40
64 66 5.541484 GGTATGTAGGGGATAATATACGGGG 59.459 48.000 0.00 0.00 0.00 5.73
118 120 0.689055 ACCAGTTTACGGGTTCCCTC 59.311 55.000 6.31 0.00 41.69 4.30
122 124 1.528161 CGTTGACCAGTTTACGGGTTC 59.472 52.381 6.16 1.57 44.40 3.62
230 232 4.819761 GCAGGTCGCATGCTCCGA 62.820 66.667 17.13 2.50 40.59 4.55
270 272 2.775032 TAGACCGCCACAAGTTCGGC 62.775 60.000 9.66 3.13 46.49 5.54
275 277 1.004918 GTGCTAGACCGCCACAAGT 60.005 57.895 0.00 0.00 0.00 3.16
300 302 4.789075 ACGCACGTAATCGCCGCT 62.789 61.111 0.00 0.00 41.18 5.52
303 305 1.893168 AACACACGCACGTAATCGCC 61.893 55.000 0.00 0.00 41.18 5.54
306 308 2.536130 GCCATAACACACGCACGTAATC 60.536 50.000 0.00 0.00 0.00 1.75
307 309 1.395608 GCCATAACACACGCACGTAAT 59.604 47.619 0.00 0.00 0.00 1.89
324 326 4.715523 GCAGTTACTGGCCGGCCA 62.716 66.667 44.03 44.03 45.02 5.36
329 331 1.006832 CACGTATGCAGTTACTGGCC 58.993 55.000 14.63 0.00 31.21 5.36
361 363 1.063951 CGAACGAACTCGAACTCCGG 61.064 60.000 6.05 0.00 41.44 5.14
388 390 4.083484 CCCACATTTCTTCTTCCACGTAAC 60.083 45.833 0.00 0.00 0.00 2.50
390 392 3.558321 CCCCACATTTCTTCTTCCACGTA 60.558 47.826 0.00 0.00 0.00 3.57
476 478 3.570975 GGTCCCTAAAACGAATTTGTGGT 59.429 43.478 0.00 0.00 32.27 4.16
479 481 9.551734 GTATATAGGTCCCTAAAACGAATTTGT 57.448 33.333 0.00 0.00 32.27 2.83
500 502 8.611654 AAACGCGTCCCATAAAAATAGTATAT 57.388 30.769 14.44 0.00 0.00 0.86
507 509 3.430556 GCAAAAACGCGTCCCATAAAAAT 59.569 39.130 14.44 0.00 0.00 1.82
512 514 0.519519 CTGCAAAAACGCGTCCCATA 59.480 50.000 14.44 0.00 33.35 2.74
513 515 1.285641 CTGCAAAAACGCGTCCCAT 59.714 52.632 14.44 0.00 33.35 4.00
514 516 2.718731 CTGCAAAAACGCGTCCCA 59.281 55.556 14.44 4.64 33.35 4.37
515 517 1.862602 ATCCTGCAAAAACGCGTCCC 61.863 55.000 14.44 0.00 33.35 4.46
538 540 8.779354 AATTAAAGTTGGTAGAGCAACTCTAG 57.221 34.615 23.24 0.00 42.78 2.43
539 541 8.999431 CAAATTAAAGTTGGTAGAGCAACTCTA 58.001 33.333 23.24 13.94 41.50 2.43
541 543 7.591426 CACAAATTAAAGTTGGTAGAGCAACTC 59.409 37.037 23.24 1.42 40.35 3.01
574 576 7.485913 GCAAATTCACTTTGATCGTTGTATCAT 59.514 33.333 2.05 0.00 45.96 2.45
576 578 6.801377 TGCAAATTCACTTTGATCGTTGTATC 59.199 34.615 2.05 0.00 45.96 2.24
580 582 4.143762 CGTGCAAATTCACTTTGATCGTTG 60.144 41.667 0.00 0.00 45.96 4.10
582 584 3.249799 TCGTGCAAATTCACTTTGATCGT 59.750 39.130 0.00 0.00 45.96 3.73
583 585 3.809234 TCGTGCAAATTCACTTTGATCG 58.191 40.909 0.00 5.57 45.96 3.69
637 639 3.353836 CAAACAGGGCCGTCGGTG 61.354 66.667 13.94 5.96 0.00 4.94
638 640 2.897172 AAACAAACAGGGCCGTCGGT 62.897 55.000 13.94 0.00 0.00 4.69
640 642 1.281656 GAAACAAACAGGGCCGTCG 59.718 57.895 0.00 0.00 0.00 5.12
641 643 0.310854 CTGAAACAAACAGGGCCGTC 59.689 55.000 0.00 0.00 0.00 4.79
642 644 1.734388 GCTGAAACAAACAGGGCCGT 61.734 55.000 0.00 0.00 36.09 5.68
644 646 0.752658 AAGCTGAAACAAACAGGGCC 59.247 50.000 0.00 0.00 36.09 5.80
646 648 2.405892 CGAAGCTGAAACAAACAGGG 57.594 50.000 0.00 0.00 36.09 4.45
660 662 4.105486 GGTGATTTTAATCCAAGCGAAGC 58.895 43.478 0.32 0.00 44.59 3.86
662 664 6.094881 CCTTAGGTGATTTTAATCCAAGCGAA 59.905 38.462 0.00 0.00 34.50 4.70
666 668 9.189156 TGAATCCTTAGGTGATTTTAATCCAAG 57.811 33.333 0.00 0.23 32.74 3.61
667 669 8.966868 GTGAATCCTTAGGTGATTTTAATCCAA 58.033 33.333 0.00 0.00 32.74 3.53
668 670 8.336235 AGTGAATCCTTAGGTGATTTTAATCCA 58.664 33.333 0.00 0.00 32.74 3.41
672 674 9.231297 CTGAAGTGAATCCTTAGGTGATTTTAA 57.769 33.333 0.00 0.00 32.74 1.52
674 676 7.234355 ACTGAAGTGAATCCTTAGGTGATTTT 58.766 34.615 0.00 0.00 32.74 1.82
690 692 9.949490 GCAAAATCAGCTTTGACACTGAAGTGA 62.949 40.741 17.11 0.00 45.49 3.41
691 693 7.918341 GCAAAATCAGCTTTGACACTGAAGTG 61.918 42.308 8.91 8.91 45.49 3.16
692 694 5.585390 CAAAATCAGCTTTGACACTGAAGT 58.415 37.500 0.00 0.00 45.49 3.01
693 695 4.443394 GCAAAATCAGCTTTGACACTGAAG 59.557 41.667 0.00 0.00 45.49 3.02
694 696 4.362279 GCAAAATCAGCTTTGACACTGAA 58.638 39.130 0.00 0.00 45.49 3.02
695 697 3.548616 CGCAAAATCAGCTTTGACACTGA 60.549 43.478 0.00 0.00 46.34 3.41
696 698 2.722629 CGCAAAATCAGCTTTGACACTG 59.277 45.455 0.00 0.00 38.35 3.66
697 699 2.618241 TCGCAAAATCAGCTTTGACACT 59.382 40.909 0.00 0.00 38.35 3.55
698 700 2.998772 TCGCAAAATCAGCTTTGACAC 58.001 42.857 0.00 0.00 38.35 3.67
699 701 3.706802 TTCGCAAAATCAGCTTTGACA 57.293 38.095 0.00 0.00 38.35 3.58
700 702 4.229096 TGATTCGCAAAATCAGCTTTGAC 58.771 39.130 7.28 0.00 38.35 3.18
701 703 4.478699 CTGATTCGCAAAATCAGCTTTGA 58.521 39.130 19.97 0.00 44.67 2.69
702 704 4.817987 CTGATTCGCAAAATCAGCTTTG 57.182 40.909 19.97 4.15 44.67 2.77
708 710 4.156373 TGATTCAGCTGATTCGCAAAATCA 59.844 37.500 25.63 20.93 39.04 2.57
709 711 4.665212 TGATTCAGCTGATTCGCAAAATC 58.335 39.130 25.63 19.06 35.46 2.17
710 712 4.669318 CTGATTCAGCTGATTCGCAAAAT 58.331 39.130 25.63 12.31 0.00 1.82
711 713 4.087510 CTGATTCAGCTGATTCGCAAAA 57.912 40.909 25.63 12.49 0.00 2.44
712 714 3.752412 CTGATTCAGCTGATTCGCAAA 57.248 42.857 25.63 12.77 0.00 3.68
725 727 3.245016 ACTTCCATGGTGAAGCTGATTCA 60.245 43.478 12.58 3.91 45.79 2.57
726 728 3.350833 ACTTCCATGGTGAAGCTGATTC 58.649 45.455 12.58 0.00 44.50 2.52
727 729 3.446442 ACTTCCATGGTGAAGCTGATT 57.554 42.857 12.58 0.00 44.50 2.57
728 730 3.264193 TGTACTTCCATGGTGAAGCTGAT 59.736 43.478 12.58 0.00 44.50 2.90
729 731 2.637382 TGTACTTCCATGGTGAAGCTGA 59.363 45.455 12.58 0.00 44.50 4.26
730 732 2.744202 GTGTACTTCCATGGTGAAGCTG 59.256 50.000 12.58 0.00 44.50 4.24
731 733 2.639839 AGTGTACTTCCATGGTGAAGCT 59.360 45.455 12.58 3.10 44.50 3.74
732 734 3.059352 AGTGTACTTCCATGGTGAAGC 57.941 47.619 12.58 1.66 44.50 3.86
733 735 5.063204 TCAAAGTGTACTTCCATGGTGAAG 58.937 41.667 12.58 11.57 45.79 3.02
734 736 5.042463 TCAAAGTGTACTTCCATGGTGAA 57.958 39.130 12.58 0.00 34.61 3.18
735 737 4.504864 CCTCAAAGTGTACTTCCATGGTGA 60.505 45.833 12.58 2.89 34.61 4.02
736 738 3.753272 CCTCAAAGTGTACTTCCATGGTG 59.247 47.826 12.58 8.75 34.61 4.17
737 739 3.394606 ACCTCAAAGTGTACTTCCATGGT 59.605 43.478 12.58 0.00 34.61 3.55
738 740 3.753272 CACCTCAAAGTGTACTTCCATGG 59.247 47.826 4.97 4.97 34.61 3.66
749 751 5.567138 ACTTTCTGAAACACCTCAAAGTG 57.433 39.130 0.00 0.00 43.65 3.16
750 752 5.622233 GCAACTTTCTGAAACACCTCAAAGT 60.622 40.000 0.00 0.00 30.95 2.66
751 753 4.800471 GCAACTTTCTGAAACACCTCAAAG 59.200 41.667 0.00 0.00 0.00 2.77
752 754 4.219507 TGCAACTTTCTGAAACACCTCAAA 59.780 37.500 0.00 0.00 0.00 2.69
753 755 3.761218 TGCAACTTTCTGAAACACCTCAA 59.239 39.130 0.00 0.00 0.00 3.02
754 756 3.128589 GTGCAACTTTCTGAAACACCTCA 59.871 43.478 9.30 0.00 0.00 3.86
755 757 3.695816 GTGCAACTTTCTGAAACACCTC 58.304 45.455 9.30 0.00 0.00 3.85
756 758 3.782889 GTGCAACTTTCTGAAACACCT 57.217 42.857 9.30 0.00 0.00 4.00
770 772 2.829741 TGGGCCATTTTTAGTGCAAC 57.170 45.000 0.00 0.00 0.00 4.17
771 773 3.135530 ACTTTGGGCCATTTTTAGTGCAA 59.864 39.130 7.26 0.00 0.00 4.08
772 774 2.703007 ACTTTGGGCCATTTTTAGTGCA 59.297 40.909 7.26 0.00 0.00 4.57
773 775 3.244044 TGACTTTGGGCCATTTTTAGTGC 60.244 43.478 7.26 2.37 0.00 4.40
774 776 4.280677 TCTGACTTTGGGCCATTTTTAGTG 59.719 41.667 7.26 0.00 0.00 2.74
775 777 4.479158 TCTGACTTTGGGCCATTTTTAGT 58.521 39.130 7.26 6.26 0.00 2.24
776 778 5.665916 ATCTGACTTTGGGCCATTTTTAG 57.334 39.130 7.26 4.08 0.00 1.85
777 779 5.541868 TGAATCTGACTTTGGGCCATTTTTA 59.458 36.000 7.26 0.00 0.00 1.52
778 780 4.347583 TGAATCTGACTTTGGGCCATTTTT 59.652 37.500 7.26 0.00 0.00 1.94
779 781 3.903090 TGAATCTGACTTTGGGCCATTTT 59.097 39.130 7.26 0.00 0.00 1.82
780 782 3.509442 TGAATCTGACTTTGGGCCATTT 58.491 40.909 7.26 0.00 0.00 2.32
781 783 3.094572 CTGAATCTGACTTTGGGCCATT 58.905 45.455 7.26 0.00 0.00 3.16
782 784 2.731572 CTGAATCTGACTTTGGGCCAT 58.268 47.619 7.26 0.00 0.00 4.40
783 785 1.887956 GCTGAATCTGACTTTGGGCCA 60.888 52.381 0.00 0.00 0.00 5.36
784 786 0.813821 GCTGAATCTGACTTTGGGCC 59.186 55.000 0.00 0.00 0.00 5.80
785 787 1.831580 AGCTGAATCTGACTTTGGGC 58.168 50.000 0.00 0.00 0.00 5.36
786 788 3.190118 GTGAAGCTGAATCTGACTTTGGG 59.810 47.826 0.00 0.00 0.00 4.12
787 789 4.070716 AGTGAAGCTGAATCTGACTTTGG 58.929 43.478 0.00 0.00 0.00 3.28
800 802 4.959446 GCTTTGCCAGTGAAGCTG 57.041 55.556 7.59 0.00 43.69 4.24
802 804 0.886563 ATCAGCTTTGCCAGTGAAGC 59.113 50.000 6.89 6.89 46.57 3.86
803 805 2.818432 AGAATCAGCTTTGCCAGTGAAG 59.182 45.455 0.00 0.00 0.00 3.02
804 806 2.867624 AGAATCAGCTTTGCCAGTGAA 58.132 42.857 0.00 0.00 0.00 3.18
805 807 2.574006 AGAATCAGCTTTGCCAGTGA 57.426 45.000 0.00 0.00 0.00 3.41
806 808 4.771590 TTTAGAATCAGCTTTGCCAGTG 57.228 40.909 0.00 0.00 0.00 3.66
807 809 5.067023 GCTATTTAGAATCAGCTTTGCCAGT 59.933 40.000 0.00 0.00 0.00 4.00
808 810 5.506982 GGCTATTTAGAATCAGCTTTGCCAG 60.507 44.000 0.00 0.00 35.94 4.85
809 811 4.339247 GGCTATTTAGAATCAGCTTTGCCA 59.661 41.667 0.00 0.00 35.94 4.92
810 812 4.555511 CGGCTATTTAGAATCAGCTTTGCC 60.556 45.833 0.00 0.00 34.41 4.52
811 813 4.035675 ACGGCTATTTAGAATCAGCTTTGC 59.964 41.667 0.00 0.00 34.41 3.68
812 814 5.741388 ACGGCTATTTAGAATCAGCTTTG 57.259 39.130 0.00 0.00 34.41 2.77
813 815 6.759497 AAACGGCTATTTAGAATCAGCTTT 57.241 33.333 0.00 0.00 34.41 3.51
814 816 8.451908 AATAAACGGCTATTTAGAATCAGCTT 57.548 30.769 0.00 0.00 34.41 3.74
815 817 8.451908 AAATAAACGGCTATTTAGAATCAGCT 57.548 30.769 3.04 0.00 31.21 4.24
816 818 8.342634 TGAAATAAACGGCTATTTAGAATCAGC 58.657 33.333 4.53 0.00 32.77 4.26
825 827 9.921637 TCTGAAATTTGAAATAAACGGCTATTT 57.078 25.926 0.00 4.26 34.81 1.40
828 830 9.567848 GAATCTGAAATTTGAAATAAACGGCTA 57.432 29.630 0.00 0.00 0.00 3.93
829 831 8.087750 TGAATCTGAAATTTGAAATAAACGGCT 58.912 29.630 0.00 0.00 0.00 5.52
830 832 8.238481 TGAATCTGAAATTTGAAATAAACGGC 57.762 30.769 0.00 0.00 0.00 5.68
838 840 9.304731 CAGTGAAGTTGAATCTGAAATTTGAAA 57.695 29.630 0.00 0.00 0.00 2.69
839 841 7.922278 CCAGTGAAGTTGAATCTGAAATTTGAA 59.078 33.333 0.00 0.00 0.00 2.69
840 842 7.428020 CCAGTGAAGTTGAATCTGAAATTTGA 58.572 34.615 0.00 0.00 0.00 2.69
841 843 6.145048 GCCAGTGAAGTTGAATCTGAAATTTG 59.855 38.462 0.00 0.00 0.00 2.32
842 844 6.041296 AGCCAGTGAAGTTGAATCTGAAATTT 59.959 34.615 0.00 0.00 0.00 1.82
843 845 5.537674 AGCCAGTGAAGTTGAATCTGAAATT 59.462 36.000 0.00 0.00 0.00 1.82
844 846 5.048224 CAGCCAGTGAAGTTGAATCTGAAAT 60.048 40.000 0.00 0.00 0.00 2.17
845 847 4.276678 CAGCCAGTGAAGTTGAATCTGAAA 59.723 41.667 0.00 0.00 0.00 2.69
846 848 3.817084 CAGCCAGTGAAGTTGAATCTGAA 59.183 43.478 0.00 0.00 0.00 3.02
847 849 3.405831 CAGCCAGTGAAGTTGAATCTGA 58.594 45.455 0.00 0.00 0.00 3.27
848 850 2.095364 GCAGCCAGTGAAGTTGAATCTG 60.095 50.000 0.00 0.00 0.00 2.90
849 851 2.157738 GCAGCCAGTGAAGTTGAATCT 58.842 47.619 0.00 0.00 0.00 2.40
850 852 2.157738 AGCAGCCAGTGAAGTTGAATC 58.842 47.619 0.00 0.00 0.00 2.52
851 853 2.157738 GAGCAGCCAGTGAAGTTGAAT 58.842 47.619 0.00 0.00 0.00 2.57
852 854 1.597742 GAGCAGCCAGTGAAGTTGAA 58.402 50.000 0.00 0.00 0.00 2.69
853 855 0.250467 GGAGCAGCCAGTGAAGTTGA 60.250 55.000 0.00 0.00 36.34 3.18
854 856 1.239968 GGGAGCAGCCAGTGAAGTTG 61.240 60.000 0.00 0.00 38.95 3.16
855 857 1.073897 GGGAGCAGCCAGTGAAGTT 59.926 57.895 0.00 0.00 38.95 2.66
856 858 1.845205 AGGGAGCAGCCAGTGAAGT 60.845 57.895 0.00 0.00 38.95 3.01
857 859 1.376942 CAGGGAGCAGCCAGTGAAG 60.377 63.158 0.00 0.00 38.95 3.02
858 860 1.418097 TTCAGGGAGCAGCCAGTGAA 61.418 55.000 0.00 7.94 38.27 3.18
859 861 1.834856 CTTCAGGGAGCAGCCAGTGA 61.835 60.000 0.00 0.00 38.95 3.41
860 862 1.376942 CTTCAGGGAGCAGCCAGTG 60.377 63.158 0.00 0.00 38.95 3.66
861 863 3.076092 CTTCAGGGAGCAGCCAGT 58.924 61.111 0.00 0.00 38.95 4.00
862 864 2.438075 GCTTCAGGGAGCAGCCAG 60.438 66.667 0.00 0.00 42.25 4.85
863 865 2.932194 AGCTTCAGGGAGCAGCCA 60.932 61.111 1.83 0.00 45.12 4.75
864 866 2.438075 CAGCTTCAGGGAGCAGCC 60.438 66.667 1.83 0.00 45.12 4.85
865 867 0.607489 TTTCAGCTTCAGGGAGCAGC 60.607 55.000 1.83 0.00 45.12 5.25
866 868 1.163554 GTTTCAGCTTCAGGGAGCAG 58.836 55.000 1.83 0.00 45.12 4.24
867 869 0.473755 TGTTTCAGCTTCAGGGAGCA 59.526 50.000 1.83 0.00 45.12 4.26
868 870 1.609208 TTGTTTCAGCTTCAGGGAGC 58.391 50.000 0.00 0.00 43.02 4.70
869 871 2.951642 TGTTTGTTTCAGCTTCAGGGAG 59.048 45.455 0.00 0.00 0.00 4.30
870 872 2.951642 CTGTTTGTTTCAGCTTCAGGGA 59.048 45.455 0.00 0.00 0.00 4.20
871 873 2.035066 CCTGTTTGTTTCAGCTTCAGGG 59.965 50.000 0.00 0.00 37.78 4.45
872 874 2.035066 CCCTGTTTGTTTCAGCTTCAGG 59.965 50.000 0.00 0.00 40.13 3.86
873 875 2.544486 GCCCTGTTTGTTTCAGCTTCAG 60.544 50.000 0.00 0.00 0.00 3.02
874 876 1.408702 GCCCTGTTTGTTTCAGCTTCA 59.591 47.619 0.00 0.00 0.00 3.02
875 877 1.269778 GGCCCTGTTTGTTTCAGCTTC 60.270 52.381 0.00 0.00 0.00 3.86
876 878 0.752658 GGCCCTGTTTGTTTCAGCTT 59.247 50.000 0.00 0.00 0.00 3.74
877 879 1.115326 GGGCCCTGTTTGTTTCAGCT 61.115 55.000 17.04 0.00 0.00 4.24
878 880 1.367471 GGGCCCTGTTTGTTTCAGC 59.633 57.895 17.04 0.00 0.00 4.26
879 881 0.758685 TGGGGCCCTGTTTGTTTCAG 60.759 55.000 25.93 0.00 0.00 3.02
880 882 0.758685 CTGGGGCCCTGTTTGTTTCA 60.759 55.000 25.93 6.57 0.00 2.69
881 883 1.471829 CCTGGGGCCCTGTTTGTTTC 61.472 60.000 25.93 1.06 0.00 2.78
882 884 1.459348 CCTGGGGCCCTGTTTGTTT 60.459 57.895 25.93 0.00 0.00 2.83
883 885 2.201210 CCTGGGGCCCTGTTTGTT 59.799 61.111 25.93 0.00 0.00 2.83
884 886 4.621087 GCCTGGGGCCCTGTTTGT 62.621 66.667 25.93 0.00 44.06 2.83
914 916 1.275471 CTGTGTCGTCGCGATGTTGT 61.275 55.000 26.40 0.00 38.42 3.32
1103 1136 2.363361 GGTCGGGAGGAAGGGAGA 59.637 66.667 0.00 0.00 0.00 3.71
1294 1327 1.452145 GAACCACCGCAGAAAAGCCA 61.452 55.000 0.00 0.00 0.00 4.75
1423 1459 3.818787 GCATCCAGGCCGTTGCAG 61.819 66.667 14.66 0.00 40.13 4.41
1601 1642 9.054922 CCTTCAATAAACACAAAAATTGTCCAT 57.945 29.630 0.00 0.00 43.23 3.41
1604 1645 8.655651 TCCCTTCAATAAACACAAAAATTGTC 57.344 30.769 0.00 0.00 43.23 3.18
1654 1695 1.383248 ATCCGTCTCCCTCCCCTTG 60.383 63.158 0.00 0.00 0.00 3.61
1765 1806 4.221703 AGAAATCACACACTGGTCTCCTAG 59.778 45.833 0.00 0.00 0.00 3.02
2045 2185 6.600882 ACTGCTGGAAATTTTGATGAGATT 57.399 33.333 0.00 0.00 0.00 2.40
2206 2361 1.858739 AACCCTGCTTCCCGCCATTA 61.859 55.000 0.00 0.00 38.05 1.90
2207 2362 3.224007 AACCCTGCTTCCCGCCATT 62.224 57.895 0.00 0.00 38.05 3.16
2532 3052 7.362401 GCAAGTTCAGTTGGATATCTCAATGTT 60.362 37.037 2.05 0.00 0.00 2.71
2592 3112 4.070716 GGTCCTCCTCATCATTATGCTTG 58.929 47.826 0.00 0.00 32.76 4.01
3148 3668 6.951971 AGCTAACCACTGATTCATAGAAACT 58.048 36.000 0.00 0.00 0.00 2.66
3307 3827 6.925165 CAGTCCAAATAAATTTTGTCAGCTGT 59.075 34.615 14.67 0.00 0.00 4.40
3312 3832 6.166984 TGCCAGTCCAAATAAATTTTGTCA 57.833 33.333 0.00 0.00 0.00 3.58
3575 4095 9.573133 CACTTTCTTGTTTGTATTTCTGAGTTT 57.427 29.630 0.00 0.00 0.00 2.66
3577 4097 8.506168 TCACTTTCTTGTTTGTATTTCTGAGT 57.494 30.769 0.00 0.00 0.00 3.41
3786 4306 1.138859 ACTTTTGGCCTGCTTGGAAAC 59.861 47.619 3.32 0.00 38.35 2.78
4581 5106 4.870123 TTTTGGTAGTGCTTGCATGAAT 57.130 36.364 3.33 0.00 0.00 2.57
4595 5221 7.836685 TGCTAAATGGGATAGAACATTTTGGTA 59.163 33.333 7.78 0.67 42.78 3.25
4596 5222 6.667414 TGCTAAATGGGATAGAACATTTTGGT 59.333 34.615 7.78 0.00 42.78 3.67
4597 5223 7.111247 TGCTAAATGGGATAGAACATTTTGG 57.889 36.000 7.78 4.08 42.78 3.28
4623 5249 6.543831 CCCTTAAGATGGTTTACTCATTCTGG 59.456 42.308 3.36 0.00 0.00 3.86
5064 6122 5.653769 TGAAAGGGAATGAATCTGGAATGTC 59.346 40.000 0.00 0.00 0.00 3.06
5251 6309 1.273327 CCAATGTGGCTTTCAACTCCC 59.727 52.381 0.00 0.00 0.00 4.30
5430 6490 4.922206 TCATCTACCTTCCATTTTGCAGT 58.078 39.130 0.00 0.00 0.00 4.40
5934 8039 6.421801 CCAAATTTTCTAGTTTGAGCAGTTGG 59.578 38.462 5.38 0.00 37.48 3.77
6525 8630 9.914131 ATAACTCTATCAGGAAAAAGCAAAAAC 57.086 29.630 0.00 0.00 0.00 2.43
7154 9259 2.280628 CAGGCAATCGGTTTAGAGGAC 58.719 52.381 0.00 0.00 0.00 3.85
7200 9311 0.596600 TGAACGTCGGCTGTGAGAAC 60.597 55.000 0.00 0.00 0.00 3.01
7244 9355 0.255318 CTCTGGGAGCTGAGGCATTT 59.745 55.000 0.00 0.00 41.70 2.32
7420 9537 2.470821 GTATGTGTCGACCATACTGCC 58.529 52.381 29.99 16.36 40.83 4.85
7481 9598 0.517316 CGCGGGAAAAGAGTCTTTGG 59.483 55.000 18.70 9.71 0.00 3.28
7486 9603 0.949105 TTGCTCGCGGGAAAAGAGTC 60.949 55.000 12.03 0.00 34.69 3.36
7500 9617 3.668447 TCTTCTGACTGATGGTTTGCTC 58.332 45.455 0.00 0.00 0.00 4.26
7527 9644 7.418337 TGCAGTTGGAAATACTAGATGACTA 57.582 36.000 0.00 0.00 0.00 2.59
7629 9935 6.183360 CCATATCATTTCTGAAAGGGGTTGAC 60.183 42.308 14.01 0.00 34.37 3.18
7806 10112 0.392336 ATCTTGATCTCTCCTGGCGC 59.608 55.000 0.00 0.00 0.00 6.53
7809 10115 7.151308 GTGTATTACATCTTGATCTCTCCTGG 58.849 42.308 0.00 0.00 0.00 4.45
7883 10189 3.118592 GGAGTCAATAGGTGGAGGACTTG 60.119 52.174 0.00 0.00 38.82 3.16
7902 10208 1.133450 TCCCCTCGGTATCTGAAGGAG 60.133 57.143 0.00 0.00 0.00 3.69
8120 10426 5.122512 TCAGAGTCTGTTACTGTTAGCAC 57.877 43.478 19.53 0.00 39.07 4.40
8124 10432 4.526650 TGGCATCAGAGTCTGTTACTGTTA 59.473 41.667 19.53 0.00 39.07 2.41
8125 10433 3.324846 TGGCATCAGAGTCTGTTACTGTT 59.675 43.478 19.53 0.00 39.07 3.16
8126 10434 2.899900 TGGCATCAGAGTCTGTTACTGT 59.100 45.455 19.53 0.00 39.07 3.55
8127 10435 3.599730 TGGCATCAGAGTCTGTTACTG 57.400 47.619 19.53 13.32 39.07 2.74
8128 10436 5.939764 TTATGGCATCAGAGTCTGTTACT 57.060 39.130 19.53 4.40 42.80 2.24
8129 10437 6.595716 AGTTTTATGGCATCAGAGTCTGTTAC 59.404 38.462 19.53 6.47 32.61 2.50
8207 10526 1.132262 CTTCCCGTGCGTTGCAAATAT 59.868 47.619 0.00 0.00 41.47 1.28
8332 10651 4.574828 CCACTAATTTACATCAAGGACCGG 59.425 45.833 0.00 0.00 0.00 5.28
8421 10752 7.174946 ACCTCCAACAAAGTTCATACATACTTG 59.825 37.037 0.00 0.00 34.95 3.16
8489 10820 3.265489 ACTACTCCCTCCCATCCAAAAA 58.735 45.455 0.00 0.00 0.00 1.94
8498 10829 8.203681 ACATAAACAATATACTACTCCCTCCC 57.796 38.462 0.00 0.00 0.00 4.30
8535 10872 6.757947 CCTCAATGTCTCAAAACAAATTGTGT 59.242 34.615 0.00 0.00 44.64 3.72
8600 10937 1.880941 ACATTCCCTGTCCCCTCTAC 58.119 55.000 0.00 0.00 29.94 2.59
8682 11268 2.998316 GCTAGGGTGAGCTTGAGAAT 57.002 50.000 0.00 0.00 39.50 2.40
8750 11350 8.502738 ACAAGGTAGACCAACATATATCCAATT 58.497 33.333 0.66 0.00 38.89 2.32
8751 11351 8.045720 ACAAGGTAGACCAACATATATCCAAT 57.954 34.615 0.66 0.00 38.89 3.16
8752 11352 7.419750 GGACAAGGTAGACCAACATATATCCAA 60.420 40.741 0.66 0.00 38.89 3.53
8755 11355 7.062749 TGGACAAGGTAGACCAACATATATC 57.937 40.000 0.66 0.00 38.89 1.63
8756 11356 6.464465 GCTGGACAAGGTAGACCAACATATAT 60.464 42.308 0.66 0.00 38.89 0.86
8847 13481 2.997897 GACTCCCAGCCGGTGACT 60.998 66.667 1.90 0.00 0.00 3.41
8880 13514 2.184322 GGATTCGCAGCCTGACGA 59.816 61.111 7.06 7.06 36.32 4.20
8881 13515 3.257561 CGGATTCGCAGCCTGACG 61.258 66.667 0.00 0.00 0.00 4.35
8882 13516 2.167861 GTCGGATTCGCAGCCTGAC 61.168 63.158 0.00 0.00 36.13 3.51
8883 13517 2.184322 GTCGGATTCGCAGCCTGA 59.816 61.111 0.00 0.00 36.13 3.86
8884 13518 2.125552 TGTCGGATTCGCAGCCTG 60.126 61.111 0.00 0.00 36.13 4.85
8885 13519 2.125512 GTGTCGGATTCGCAGCCT 60.126 61.111 0.00 0.00 36.13 4.58
8886 13520 3.195698 GGTGTCGGATTCGCAGCC 61.196 66.667 8.30 0.00 36.07 4.85
8887 13521 3.554692 CGGTGTCGGATTCGCAGC 61.555 66.667 9.17 9.17 37.46 5.25
8888 13522 2.158959 GTCGGTGTCGGATTCGCAG 61.159 63.158 0.00 0.00 36.95 5.18
8911 13545 4.477302 TTTAAAGGCTCGTAGCACAAAC 57.523 40.909 8.71 0.00 44.75 2.93
8917 13551 3.615496 TCGTGATTTTAAAGGCTCGTAGC 59.385 43.478 11.12 0.00 41.46 3.58
9180 13856 1.745489 TCATCTGCTGCTGCTGCTG 60.745 57.895 27.67 26.32 40.48 4.41
9181 13857 1.745864 GTCATCTGCTGCTGCTGCT 60.746 57.895 27.67 9.19 40.48 4.24
9203 13885 3.999285 ACCGCCTCCCTCCTCTGT 61.999 66.667 0.00 0.00 0.00 3.41
9252 13934 2.124151 GCCTATGGCCACCAGGTG 60.124 66.667 27.97 13.35 44.06 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.