Multiple sequence alignment - TraesCS6D01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G219800 chr6D 100.000 4357 0 0 1 4357 309958025 309953669 0.000000e+00 8046.0
1 TraesCS6D01G219800 chr6D 94.481 761 37 5 6 761 433720260 433719500 0.000000e+00 1168.0
2 TraesCS6D01G219800 chr6D 96.104 77 3 0 2727 2803 309955223 309955299 4.570000e-25 126.0
3 TraesCS6D01G219800 chr6A 94.110 1562 63 18 2802 4357 446730407 446728869 0.000000e+00 2348.0
4 TraesCS6D01G219800 chr6A 89.312 552 30 7 2196 2729 446730945 446730405 0.000000e+00 665.0
5 TraesCS6D01G219800 chr6A 88.717 452 31 12 1373 1812 446731482 446731039 6.410000e-148 534.0
6 TraesCS6D01G219800 chr6A 89.510 429 13 12 764 1160 446731988 446731560 8.360000e-142 514.0
7 TraesCS6D01G219800 chr6A 96.154 78 2 1 2727 2804 594463442 594463518 4.570000e-25 126.0
8 TraesCS6D01G219800 chr6A 95.349 43 1 1 1304 1346 446731531 446731490 2.810000e-07 67.6
9 TraesCS6D01G219800 chr4D 94.386 766 38 5 1 762 6260790 6260026 0.000000e+00 1171.0
10 TraesCS6D01G219800 chr4D 93.443 61 2 1 2103 2161 405770490 405770430 6.000000e-14 89.8
11 TraesCS6D01G219800 chr5D 94.010 768 40 6 1 762 319134019 319134786 0.000000e+00 1158.0
12 TraesCS6D01G219800 chr5D 93.126 771 46 6 1 765 443842784 443843553 0.000000e+00 1123.0
13 TraesCS6D01G219800 chr5D 93.976 83 2 1 2727 2806 496271808 496271890 5.920000e-24 122.0
14 TraesCS6D01G219800 chr7D 93.774 771 43 4 1 766 608419397 608420167 0.000000e+00 1153.0
15 TraesCS6D01G219800 chr7D 93.220 767 39 9 6 762 17127370 17128133 0.000000e+00 1116.0
16 TraesCS6D01G219800 chr7D 92.746 772 47 7 1 765 412233578 412232809 0.000000e+00 1107.0
17 TraesCS6D01G219800 chr3D 93.766 770 43 5 1 765 594974051 594973282 0.000000e+00 1151.0
18 TraesCS6D01G219800 chr1D 93.636 770 44 5 1 765 9042519 9041750 0.000000e+00 1146.0
19 TraesCS6D01G219800 chr1D 94.915 59 1 1 2108 2164 471827130 471827188 1.670000e-14 91.6
20 TraesCS6D01G219800 chr1D 94.643 56 1 1 2108 2161 471827185 471827130 7.760000e-13 86.1
21 TraesCS6D01G219800 chr6B 89.558 747 48 14 1371 2102 477793381 477792650 0.000000e+00 920.0
22 TraesCS6D01G219800 chr6B 84.575 765 73 23 2833 3587 477792051 477791322 0.000000e+00 717.0
23 TraesCS6D01G219800 chr6B 93.199 397 25 1 3961 4357 477790974 477790580 2.260000e-162 582.0
24 TraesCS6D01G219800 chr6B 94.426 305 14 3 2159 2462 477792642 477792340 2.370000e-127 466.0
25 TraesCS6D01G219800 chr6B 87.828 419 21 12 773 1162 477793872 477793455 8.530000e-127 464.0
26 TraesCS6D01G219800 chr6B 88.485 330 21 9 3640 3964 477791325 477791008 2.460000e-102 383.0
27 TraesCS6D01G219800 chr2B 96.296 81 2 1 2727 2807 159251533 159251612 9.830000e-27 132.0
28 TraesCS6D01G219800 chr2B 94.048 84 5 0 2723 2806 693753370 693753287 1.270000e-25 128.0
29 TraesCS6D01G219800 chr2B 90.385 52 2 2 1103 1154 550040222 550040270 1.010000e-06 65.8
30 TraesCS6D01G219800 chr1B 94.118 85 3 1 2722 2804 589766214 589766298 1.270000e-25 128.0
31 TraesCS6D01G219800 chr5A 96.104 77 3 0 2727 2803 673554634 673554710 4.570000e-25 126.0
32 TraesCS6D01G219800 chr7B 94.937 79 4 0 2727 2805 193316971 193316893 1.650000e-24 124.0
33 TraesCS6D01G219800 chr7B 100.000 28 0 0 2137 2164 553217876 553217903 8.000000e-03 52.8
34 TraesCS6D01G219800 chr2D 93.902 82 1 2 2723 2803 619666336 619666414 2.130000e-23 121.0
35 TraesCS6D01G219800 chr2D 92.424 66 2 2 2107 2169 582301487 582301422 1.670000e-14 91.6
36 TraesCS6D01G219800 chr2D 89.231 65 2 2 2101 2161 130821523 130821460 4.670000e-10 76.8
37 TraesCS6D01G219800 chr2D 90.385 52 2 2 1103 1154 470907367 470907415 1.010000e-06 65.8
38 TraesCS6D01G219800 chr5B 94.643 56 1 1 2108 2161 677155408 677155463 7.760000e-13 86.1
39 TraesCS6D01G219800 chr2A 94.643 56 1 1 2108 2161 726203048 726203103 7.760000e-13 86.1
40 TraesCS6D01G219800 chr2A 94.643 56 1 1 2108 2161 726214485 726214540 7.760000e-13 86.1
41 TraesCS6D01G219800 chr2A 90.385 52 2 2 1103 1154 612418960 612419008 1.010000e-06 65.8
42 TraesCS6D01G219800 chr3B 89.062 64 2 2 2101 2164 379357524 379357466 1.680000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G219800 chr6D 309953669 309958025 4356 True 8046.000000 8046 100.0000 1 4357 1 chr6D.!!$R1 4356
1 TraesCS6D01G219800 chr6D 433719500 433720260 760 True 1168.000000 1168 94.4810 6 761 1 chr6D.!!$R2 755
2 TraesCS6D01G219800 chr6A 446728869 446731988 3119 True 825.720000 2348 91.3996 764 4357 5 chr6A.!!$R1 3593
3 TraesCS6D01G219800 chr4D 6260026 6260790 764 True 1171.000000 1171 94.3860 1 762 1 chr4D.!!$R1 761
4 TraesCS6D01G219800 chr5D 319134019 319134786 767 False 1158.000000 1158 94.0100 1 762 1 chr5D.!!$F1 761
5 TraesCS6D01G219800 chr5D 443842784 443843553 769 False 1123.000000 1123 93.1260 1 765 1 chr5D.!!$F2 764
6 TraesCS6D01G219800 chr7D 608419397 608420167 770 False 1153.000000 1153 93.7740 1 766 1 chr7D.!!$F2 765
7 TraesCS6D01G219800 chr7D 17127370 17128133 763 False 1116.000000 1116 93.2200 6 762 1 chr7D.!!$F1 756
8 TraesCS6D01G219800 chr7D 412232809 412233578 769 True 1107.000000 1107 92.7460 1 765 1 chr7D.!!$R1 764
9 TraesCS6D01G219800 chr3D 594973282 594974051 769 True 1151.000000 1151 93.7660 1 765 1 chr3D.!!$R1 764
10 TraesCS6D01G219800 chr1D 9041750 9042519 769 True 1146.000000 1146 93.6360 1 765 1 chr1D.!!$R1 764
11 TraesCS6D01G219800 chr6B 477790580 477793872 3292 True 588.666667 920 89.6785 773 4357 6 chr6B.!!$R1 3584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 791 0.246086 GCTCTGAGCTCCCGGATATG 59.754 60.0 21.93 0.0 38.45 1.78 F
1749 1812 0.107508 AGCAGATCCATTGTCACCCG 60.108 55.0 0.00 0.0 0.00 5.28 F
2121 2216 0.186873 TATGGTACTCCCTCCGTCCC 59.813 60.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2242 0.106116 AGGACATACTCCCTCCGTCC 60.106 60.0 0.00 0.00 45.34 4.79 R
2871 3054 0.041238 TGGATCGGTCTTCCAGGACT 59.959 55.0 0.00 0.00 38.35 3.85 R
3374 3560 0.670546 AACAGATCACCTCCAACGCG 60.671 55.0 3.53 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 2.125552 CGCTGATTCTCCACGCCA 60.126 61.111 0.00 0.00 0.00 5.69
281 291 2.788589 GGAGGAAGGGGAGAGGGT 59.211 66.667 0.00 0.00 0.00 4.34
388 399 2.813474 GTCTACGCGTGGCATGCA 60.813 61.111 29.32 11.72 0.00 3.96
679 692 2.224499 GGCAAAAATTGAGCCCTTGGAA 60.224 45.455 5.06 0.00 42.58 3.53
728 742 2.358247 GCCGAAAAGTCGCCTGGA 60.358 61.111 0.00 0.00 46.28 3.86
776 791 0.246086 GCTCTGAGCTCCCGGATATG 59.754 60.000 21.93 0.00 38.45 1.78
842 864 1.201429 TTTCCTCCAGGCTCCTGTCC 61.201 60.000 14.27 0.00 42.15 4.02
906 949 5.818678 AACCCGTTCTATATATTGCTCCA 57.181 39.130 0.00 0.00 0.00 3.86
1017 1066 3.764160 GATGGCTGGGGAGGAAGCG 62.764 68.421 0.00 0.00 40.46 4.68
1162 1217 5.064962 GTCGACAGCAGTGAGTATACTACTT 59.935 44.000 11.55 0.00 39.59 2.24
1163 1218 5.064834 TCGACAGCAGTGAGTATACTACTTG 59.935 44.000 5.09 5.60 39.59 3.16
1164 1219 5.000012 ACAGCAGTGAGTATACTACTTGC 58.000 43.478 19.54 19.54 39.59 4.01
1165 1220 4.707448 ACAGCAGTGAGTATACTACTTGCT 59.293 41.667 22.20 22.20 45.97 3.91
1166 1221 5.163602 ACAGCAGTGAGTATACTACTTGCTC 60.164 44.000 23.86 7.96 43.26 4.26
1168 1223 5.654650 AGCAGTGAGTATACTACTTGCTCTT 59.345 40.000 22.20 9.17 43.26 2.85
1169 1224 5.974751 GCAGTGAGTATACTACTTGCTCTTC 59.025 44.000 19.73 2.42 39.59 2.87
1170 1225 6.404844 GCAGTGAGTATACTACTTGCTCTTCA 60.405 42.308 19.73 4.55 39.59 3.02
1171 1226 7.539436 CAGTGAGTATACTACTTGCTCTTCAA 58.461 38.462 5.09 0.00 39.59 2.69
1172 1227 8.029522 CAGTGAGTATACTACTTGCTCTTCAAA 58.970 37.037 5.09 0.00 39.59 2.69
1175 1230 7.178628 TGAGTATACTACTTGCTCTTCAAACCT 59.821 37.037 5.09 0.00 39.59 3.50
1176 1231 7.548967 AGTATACTACTTGCTCTTCAAACCTC 58.451 38.462 2.75 0.00 34.86 3.85
1177 1232 4.965200 ACTACTTGCTCTTCAAACCTCT 57.035 40.909 0.00 0.00 33.65 3.69
1178 1233 4.888917 ACTACTTGCTCTTCAAACCTCTC 58.111 43.478 0.00 0.00 33.65 3.20
1179 1234 3.133141 ACTTGCTCTTCAAACCTCTCC 57.867 47.619 0.00 0.00 33.65 3.71
1183 1238 2.564947 TGCTCTTCAAACCTCTCCTCTC 59.435 50.000 0.00 0.00 0.00 3.20
1185 1240 3.368323 GCTCTTCAAACCTCTCCTCTCTG 60.368 52.174 0.00 0.00 0.00 3.35
1186 1241 3.831911 CTCTTCAAACCTCTCCTCTCTGT 59.168 47.826 0.00 0.00 0.00 3.41
1187 1242 4.227197 TCTTCAAACCTCTCCTCTCTGTT 58.773 43.478 0.00 0.00 0.00 3.16
1188 1243 4.039730 TCTTCAAACCTCTCCTCTCTGTTG 59.960 45.833 0.00 0.00 0.00 3.33
1189 1244 2.037772 TCAAACCTCTCCTCTCTGTTGC 59.962 50.000 0.00 0.00 0.00 4.17
1190 1245 2.022718 AACCTCTCCTCTCTGTTGCT 57.977 50.000 0.00 0.00 0.00 3.91
1191 1246 1.265236 ACCTCTCCTCTCTGTTGCTG 58.735 55.000 0.00 0.00 0.00 4.41
1192 1247 0.536260 CCTCTCCTCTCTGTTGCTGG 59.464 60.000 0.00 0.00 0.00 4.85
1193 1248 1.265236 CTCTCCTCTCTGTTGCTGGT 58.735 55.000 0.00 0.00 0.00 4.00
1194 1249 2.451490 CTCTCCTCTCTGTTGCTGGTA 58.549 52.381 0.00 0.00 0.00 3.25
1195 1250 2.828520 CTCTCCTCTCTGTTGCTGGTAA 59.171 50.000 0.00 0.00 0.00 2.85
1196 1251 3.239449 TCTCCTCTCTGTTGCTGGTAAA 58.761 45.455 0.00 0.00 0.00 2.01
1197 1252 3.840666 TCTCCTCTCTGTTGCTGGTAAAT 59.159 43.478 0.00 0.00 0.00 1.40
1198 1253 4.287067 TCTCCTCTCTGTTGCTGGTAAATT 59.713 41.667 0.00 0.00 0.00 1.82
1199 1254 4.985538 TCCTCTCTGTTGCTGGTAAATTT 58.014 39.130 0.00 0.00 0.00 1.82
1200 1255 5.385198 TCCTCTCTGTTGCTGGTAAATTTT 58.615 37.500 0.00 0.00 0.00 1.82
1201 1256 5.473504 TCCTCTCTGTTGCTGGTAAATTTTC 59.526 40.000 0.00 0.00 0.00 2.29
1202 1257 5.241506 CCTCTCTGTTGCTGGTAAATTTTCA 59.758 40.000 0.00 0.00 0.00 2.69
1203 1258 6.071728 CCTCTCTGTTGCTGGTAAATTTTCAT 60.072 38.462 0.00 0.00 0.00 2.57
1204 1259 6.680810 TCTCTGTTGCTGGTAAATTTTCATG 58.319 36.000 0.00 0.00 0.00 3.07
1205 1260 5.229423 TCTGTTGCTGGTAAATTTTCATGC 58.771 37.500 0.00 0.41 0.00 4.06
1206 1261 4.314121 TGTTGCTGGTAAATTTTCATGCC 58.686 39.130 0.00 0.00 0.00 4.40
1207 1262 3.229276 TGCTGGTAAATTTTCATGCCG 57.771 42.857 0.00 0.00 0.00 5.69
1208 1263 2.822561 TGCTGGTAAATTTTCATGCCGA 59.177 40.909 0.00 0.00 0.00 5.54
1209 1264 3.446873 TGCTGGTAAATTTTCATGCCGAT 59.553 39.130 0.00 0.00 0.00 4.18
1210 1265 4.044426 GCTGGTAAATTTTCATGCCGATC 58.956 43.478 0.00 0.00 0.00 3.69
1211 1266 4.282068 CTGGTAAATTTTCATGCCGATCG 58.718 43.478 8.51 8.51 0.00 3.69
1212 1267 3.942115 TGGTAAATTTTCATGCCGATCGA 59.058 39.130 18.66 0.00 0.00 3.59
1213 1268 4.201871 TGGTAAATTTTCATGCCGATCGAC 60.202 41.667 18.66 5.29 0.00 4.20
1214 1269 3.420839 AAATTTTCATGCCGATCGACC 57.579 42.857 18.66 7.76 0.00 4.79
1215 1270 2.332063 ATTTTCATGCCGATCGACCT 57.668 45.000 18.66 0.00 0.00 3.85
1216 1271 1.651987 TTTTCATGCCGATCGACCTC 58.348 50.000 18.66 3.22 0.00 3.85
1217 1272 0.179084 TTTCATGCCGATCGACCTCC 60.179 55.000 18.66 0.00 0.00 4.30
1218 1273 1.326951 TTCATGCCGATCGACCTCCA 61.327 55.000 18.66 5.80 0.00 3.86
1219 1274 1.300465 CATGCCGATCGACCTCCAG 60.300 63.158 18.66 0.00 0.00 3.86
1220 1275 1.758514 ATGCCGATCGACCTCCAGT 60.759 57.895 18.66 0.00 0.00 4.00
1221 1276 2.021068 ATGCCGATCGACCTCCAGTG 62.021 60.000 18.66 0.00 0.00 3.66
1222 1277 2.105128 CCGATCGACCTCCAGTGC 59.895 66.667 18.66 0.00 0.00 4.40
1223 1278 2.105128 CGATCGACCTCCAGTGCC 59.895 66.667 10.26 0.00 0.00 5.01
1224 1279 2.105128 GATCGACCTCCAGTGCCG 59.895 66.667 0.00 0.00 0.00 5.69
1225 1280 4.148825 ATCGACCTCCAGTGCCGC 62.149 66.667 0.00 0.00 0.00 6.53
1228 1283 4.021925 GACCTCCAGTGCCGCCTT 62.022 66.667 0.00 0.00 0.00 4.35
1229 1284 3.959991 GACCTCCAGTGCCGCCTTC 62.960 68.421 0.00 0.00 0.00 3.46
1230 1285 3.710722 CCTCCAGTGCCGCCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
1231 1286 2.435586 CTCCAGTGCCGCCTTCTG 60.436 66.667 0.00 0.00 0.00 3.02
1232 1287 4.704833 TCCAGTGCCGCCTTCTGC 62.705 66.667 0.00 0.00 0.00 4.26
1243 1298 2.559785 CCTTCTGCGGCAAATGTCT 58.440 52.632 3.44 0.00 0.00 3.41
1244 1299 0.169672 CCTTCTGCGGCAAATGTCTG 59.830 55.000 3.44 0.00 0.00 3.51
1245 1300 1.159285 CTTCTGCGGCAAATGTCTGA 58.841 50.000 3.44 0.00 0.00 3.27
1246 1301 0.874390 TTCTGCGGCAAATGTCTGAC 59.126 50.000 3.44 0.00 0.00 3.51
1250 1305 1.416049 CGGCAAATGTCTGACGTCG 59.584 57.895 11.62 6.07 43.09 5.12
1251 1306 1.006825 CGGCAAATGTCTGACGTCGA 61.007 55.000 11.62 8.49 43.09 4.20
1252 1307 0.438830 GGCAAATGTCTGACGTCGAC 59.561 55.000 24.18 24.18 0.00 4.20
1253 1308 1.136690 GCAAATGTCTGACGTCGACA 58.863 50.000 30.69 30.69 44.59 4.35
1258 1313 2.624316 TGTCTGACGTCGACATAACC 57.376 50.000 27.48 10.83 36.54 2.85
1259 1314 1.135888 TGTCTGACGTCGACATAACCG 60.136 52.381 27.48 2.51 36.54 4.44
1260 1315 0.448990 TCTGACGTCGACATAACCGG 59.551 55.000 17.16 0.00 0.00 5.28
1261 1316 0.524816 CTGACGTCGACATAACCGGG 60.525 60.000 17.16 0.00 0.00 5.73
1262 1317 1.875364 GACGTCGACATAACCGGGC 60.875 63.158 17.16 0.00 0.00 6.13
1263 1318 2.182284 CGTCGACATAACCGGGCA 59.818 61.111 17.16 0.00 0.00 5.36
1264 1319 1.876714 CGTCGACATAACCGGGCAG 60.877 63.158 17.16 0.00 0.00 4.85
1266 1321 1.683025 TCGACATAACCGGGCAGGA 60.683 57.895 11.67 0.00 45.00 3.86
1267 1322 1.219664 CGACATAACCGGGCAGGAA 59.780 57.895 11.67 0.00 45.00 3.36
1268 1323 0.179056 CGACATAACCGGGCAGGAAT 60.179 55.000 11.67 0.23 45.00 3.01
1269 1324 1.069513 CGACATAACCGGGCAGGAATA 59.930 52.381 11.67 3.51 45.00 1.75
1270 1325 2.484065 CGACATAACCGGGCAGGAATAA 60.484 50.000 11.67 0.00 45.00 1.40
1271 1326 3.751518 GACATAACCGGGCAGGAATAAT 58.248 45.455 11.67 0.00 45.00 1.28
1272 1327 4.142038 GACATAACCGGGCAGGAATAATT 58.858 43.478 11.67 0.00 45.00 1.40
1273 1328 4.142038 ACATAACCGGGCAGGAATAATTC 58.858 43.478 11.67 0.00 45.00 2.17
1274 1329 4.141251 ACATAACCGGGCAGGAATAATTCT 60.141 41.667 11.67 0.00 45.00 2.40
1275 1330 3.382083 AACCGGGCAGGAATAATTCTT 57.618 42.857 11.67 0.00 45.00 2.52
1276 1331 2.654863 ACCGGGCAGGAATAATTCTTG 58.345 47.619 11.67 0.00 45.00 3.02
1282 1337 3.698029 CAGGAATAATTCTTGCCACGG 57.302 47.619 0.00 0.00 29.78 4.94
1283 1338 3.016736 CAGGAATAATTCTTGCCACGGT 58.983 45.455 0.00 0.00 29.78 4.83
1284 1339 4.196193 CAGGAATAATTCTTGCCACGGTA 58.804 43.478 0.00 0.00 29.78 4.02
1285 1340 4.638421 CAGGAATAATTCTTGCCACGGTAA 59.362 41.667 0.00 0.00 29.78 2.85
1286 1341 5.299279 CAGGAATAATTCTTGCCACGGTAAT 59.701 40.000 0.00 0.00 29.78 1.89
1287 1342 5.891551 AGGAATAATTCTTGCCACGGTAATT 59.108 36.000 0.00 0.00 0.00 1.40
1288 1343 6.039382 AGGAATAATTCTTGCCACGGTAATTC 59.961 38.462 0.00 0.00 0.00 2.17
1289 1344 6.039382 GGAATAATTCTTGCCACGGTAATTCT 59.961 38.462 0.00 0.00 0.00 2.40
1290 1345 7.227910 GGAATAATTCTTGCCACGGTAATTCTA 59.772 37.037 0.00 0.00 0.00 2.10
1291 1346 8.514330 AATAATTCTTGCCACGGTAATTCTAA 57.486 30.769 0.00 0.00 0.00 2.10
1292 1347 6.827586 AATTCTTGCCACGGTAATTCTAAA 57.172 33.333 0.00 0.00 0.00 1.85
1293 1348 5.873179 TTCTTGCCACGGTAATTCTAAAG 57.127 39.130 0.00 0.00 0.00 1.85
1294 1349 5.155278 TCTTGCCACGGTAATTCTAAAGA 57.845 39.130 0.00 0.00 0.00 2.52
1295 1350 5.175859 TCTTGCCACGGTAATTCTAAAGAG 58.824 41.667 0.00 0.00 0.00 2.85
1296 1351 4.811969 TGCCACGGTAATTCTAAAGAGA 57.188 40.909 0.00 0.00 0.00 3.10
1297 1352 5.155278 TGCCACGGTAATTCTAAAGAGAA 57.845 39.130 0.00 0.00 45.75 2.87
1298 1353 5.175859 TGCCACGGTAATTCTAAAGAGAAG 58.824 41.667 0.00 0.00 44.90 2.85
1299 1354 5.046878 TGCCACGGTAATTCTAAAGAGAAGA 60.047 40.000 0.00 0.00 44.90 2.87
1339 1394 5.513094 CCATTCTCAACTGTGAAGAGGGTTA 60.513 44.000 5.65 0.00 31.88 2.85
1341 1396 5.623956 TCTCAACTGTGAAGAGGGTTAAA 57.376 39.130 5.65 0.00 31.88 1.52
1342 1397 6.187727 TCTCAACTGTGAAGAGGGTTAAAT 57.812 37.500 5.65 0.00 31.88 1.40
1343 1398 7.311092 TCTCAACTGTGAAGAGGGTTAAATA 57.689 36.000 5.65 0.00 31.88 1.40
1344 1399 7.918076 TCTCAACTGTGAAGAGGGTTAAATAT 58.082 34.615 5.65 0.00 31.88 1.28
1345 1400 7.824289 TCTCAACTGTGAAGAGGGTTAAATATG 59.176 37.037 5.65 0.00 31.88 1.78
1346 1401 6.374333 TCAACTGTGAAGAGGGTTAAATATGC 59.626 38.462 0.00 0.00 0.00 3.14
1348 1403 3.625764 TGTGAAGAGGGTTAAATATGCGC 59.374 43.478 0.00 0.00 0.00 6.09
1350 1405 4.275936 GTGAAGAGGGTTAAATATGCGCAT 59.724 41.667 28.23 28.23 0.00 4.73
1351 1406 4.275689 TGAAGAGGGTTAAATATGCGCATG 59.724 41.667 32.48 0.00 0.00 4.06
1352 1407 4.085357 AGAGGGTTAAATATGCGCATGA 57.915 40.909 32.48 16.53 0.00 3.07
1353 1408 3.815401 AGAGGGTTAAATATGCGCATGAC 59.185 43.478 32.48 20.08 0.00 3.06
1354 1409 2.884639 AGGGTTAAATATGCGCATGACC 59.115 45.455 32.48 26.25 0.00 4.02
1355 1410 2.621055 GGGTTAAATATGCGCATGACCA 59.379 45.455 32.48 13.46 0.00 4.02
1356 1411 3.067461 GGGTTAAATATGCGCATGACCAA 59.933 43.478 32.48 17.44 0.00 3.67
1357 1412 4.041723 GGTTAAATATGCGCATGACCAAC 58.958 43.478 32.48 25.78 0.00 3.77
1358 1413 4.202010 GGTTAAATATGCGCATGACCAACT 60.202 41.667 32.48 7.17 0.00 3.16
1359 1414 3.425577 AAATATGCGCATGACCAACTG 57.574 42.857 32.48 0.00 0.00 3.16
1360 1415 1.311859 ATATGCGCATGACCAACTGG 58.688 50.000 32.48 0.00 42.17 4.00
1380 1435 2.352030 GGTTCATGTGTGCATCAACTGG 60.352 50.000 0.00 0.00 36.51 4.00
1407 1462 1.879380 TCCTGTTCGCCATGTTTTCTG 59.121 47.619 0.00 0.00 0.00 3.02
1408 1463 1.666888 CCTGTTCGCCATGTTTTCTGC 60.667 52.381 0.00 0.00 0.00 4.26
1410 1465 0.313672 GTTCGCCATGTTTTCTGCCA 59.686 50.000 0.00 0.00 0.00 4.92
1411 1466 1.067635 GTTCGCCATGTTTTCTGCCAT 60.068 47.619 0.00 0.00 0.00 4.40
1412 1467 2.121291 TCGCCATGTTTTCTGCCATA 57.879 45.000 0.00 0.00 0.00 2.74
1413 1468 1.742831 TCGCCATGTTTTCTGCCATAC 59.257 47.619 0.00 0.00 0.00 2.39
1414 1469 1.472082 CGCCATGTTTTCTGCCATACA 59.528 47.619 0.00 0.00 0.00 2.29
1415 1470 2.094803 CGCCATGTTTTCTGCCATACAA 60.095 45.455 0.00 0.00 0.00 2.41
1416 1471 3.514645 GCCATGTTTTCTGCCATACAAG 58.485 45.455 0.00 0.00 0.00 3.16
1417 1472 3.676873 GCCATGTTTTCTGCCATACAAGG 60.677 47.826 0.00 0.00 33.68 3.61
1418 1473 3.511146 CCATGTTTTCTGCCATACAAGGT 59.489 43.478 0.00 0.00 0.00 3.50
1432 1495 3.914426 ACAAGGTTCAGTCAAGTCACT 57.086 42.857 0.00 0.00 0.00 3.41
1476 1539 1.134220 TCCGGTTTCTTGTGCAGAAGT 60.134 47.619 21.71 0.00 42.76 3.01
1535 1598 2.079925 GCTCACATGAAAGAGGTGACC 58.920 52.381 0.00 0.00 36.69 4.02
1539 1602 2.480419 CACATGAAAGAGGTGACCGAAC 59.520 50.000 0.00 0.00 34.52 3.95
1541 1604 0.599204 TGAAAGAGGTGACCGAACGC 60.599 55.000 0.00 0.00 0.00 4.84
1562 1625 4.261155 CGCTGATTCAACTTTGTTCCTTCA 60.261 41.667 0.00 0.00 0.00 3.02
1599 1662 0.323629 ACAGCCGGCTAAGCTAACAA 59.676 50.000 32.30 0.00 38.95 2.83
1607 1670 4.574828 CCGGCTAAGCTAACAACATACATT 59.425 41.667 0.00 0.00 0.00 2.71
1648 1711 4.379174 GCTCTTGCGAAGGTGGAA 57.621 55.556 0.00 0.00 0.00 3.53
1651 1714 1.593196 CTCTTGCGAAGGTGGAAACA 58.407 50.000 0.00 0.00 38.70 2.83
1729 1792 7.288672 CCGAGAACAAGTAAGTTATCAACAAC 58.711 38.462 0.00 0.00 39.12 3.32
1732 1795 7.639945 AGAACAAGTAAGTTATCAACAACAGC 58.360 34.615 0.00 0.00 0.00 4.40
1733 1796 6.935741 ACAAGTAAGTTATCAACAACAGCA 57.064 33.333 0.00 0.00 0.00 4.41
1734 1797 6.959361 ACAAGTAAGTTATCAACAACAGCAG 58.041 36.000 0.00 0.00 0.00 4.24
1747 1810 2.119801 ACAGCAGATCCATTGTCACC 57.880 50.000 0.00 0.00 0.00 4.02
1748 1811 1.340405 ACAGCAGATCCATTGTCACCC 60.340 52.381 0.00 0.00 0.00 4.61
1749 1812 0.107508 AGCAGATCCATTGTCACCCG 60.108 55.000 0.00 0.00 0.00 5.28
1750 1813 1.097547 GCAGATCCATTGTCACCCGG 61.098 60.000 0.00 0.00 0.00 5.73
1774 1837 1.466856 TCATTCTGCACTGGGATTGC 58.533 50.000 0.00 0.00 40.63 3.56
1853 1940 7.279750 TGGAAATTCCTGTTACCAAACTTAC 57.720 36.000 13.78 0.00 37.46 2.34
1874 1961 2.639065 GACTGGAAAGTTGTCACACCA 58.361 47.619 0.00 0.00 0.00 4.17
1937 2027 7.587037 TGAGAATCACAAAACCTCAAATTCT 57.413 32.000 0.00 0.00 42.56 2.40
1938 2028 7.651808 TGAGAATCACAAAACCTCAAATTCTC 58.348 34.615 12.84 12.84 42.56 2.87
1944 2034 5.682862 CACAAAACCTCAAATTCTCAACTCG 59.317 40.000 0.00 0.00 0.00 4.18
1945 2035 5.215160 CAAAACCTCAAATTCTCAACTCGG 58.785 41.667 0.00 0.00 0.00 4.63
1957 2047 4.817517 TCTCAACTCGGACCTTTAACATC 58.182 43.478 0.00 0.00 0.00 3.06
1962 2052 5.997384 ACTCGGACCTTTAACATCTTAGT 57.003 39.130 0.00 0.00 0.00 2.24
1963 2053 5.963594 ACTCGGACCTTTAACATCTTAGTC 58.036 41.667 0.00 0.00 0.00 2.59
1964 2054 5.105432 ACTCGGACCTTTAACATCTTAGTCC 60.105 44.000 0.00 0.00 39.13 3.85
1965 2055 4.773674 TCGGACCTTTAACATCTTAGTCCA 59.226 41.667 7.04 0.00 41.93 4.02
1966 2056 5.105473 TCGGACCTTTAACATCTTAGTCCAG 60.105 44.000 7.04 0.73 41.93 3.86
1984 2079 1.069090 GCCGTTCAGGTCTCACACA 59.931 57.895 0.00 0.00 43.70 3.72
1989 2084 2.669924 CGTTCAGGTCTCACACATCATG 59.330 50.000 0.00 0.00 0.00 3.07
2016 2111 1.692411 AGTGCCAGTTCCAAAACCTC 58.308 50.000 0.00 0.00 35.92 3.85
2017 2112 1.064017 AGTGCCAGTTCCAAAACCTCA 60.064 47.619 0.00 0.00 35.92 3.86
2057 2152 9.067986 CCATAAATCTAGATTACCCCAAACTTC 57.932 37.037 18.23 0.00 0.00 3.01
2062 2157 9.547279 AATCTAGATTACCCCAAACTTCATTTT 57.453 29.630 16.50 0.00 0.00 1.82
2067 2162 8.929487 AGATTACCCCAAACTTCATTTTTGTTA 58.071 29.630 0.00 0.00 32.92 2.41
2102 2197 2.026449 CCTCTCTTCTTGAGGCCACAAT 60.026 50.000 16.37 0.00 43.67 2.71
2103 2198 3.198635 CCTCTCTTCTTGAGGCCACAATA 59.801 47.826 16.37 6.48 43.67 1.90
2104 2199 4.141528 CCTCTCTTCTTGAGGCCACAATAT 60.142 45.833 16.37 0.00 43.67 1.28
2105 2200 4.774124 TCTCTTCTTGAGGCCACAATATG 58.226 43.478 16.37 11.22 42.86 1.78
2106 2201 3.881688 CTCTTCTTGAGGCCACAATATGG 59.118 47.826 16.37 4.87 41.85 2.74
2108 2203 5.396772 CTCTTCTTGAGGCCACAATATGGTA 60.397 44.000 16.37 0.00 41.37 3.25
2109 2204 7.403346 CTCTTCTTGAGGCCACAATATGGTAC 61.403 46.154 16.37 0.00 41.37 3.34
2110 2205 9.475170 CTCTTCTTGAGGCCACAATATGGTACT 62.475 44.444 16.37 0.00 41.37 2.73
2116 2211 3.771577 CCACAATATGGTACTCCCTCC 57.228 52.381 0.00 0.00 44.46 4.30
2117 2212 2.037251 CCACAATATGGTACTCCCTCCG 59.963 54.545 0.00 0.00 44.46 4.63
2118 2213 2.698797 CACAATATGGTACTCCCTCCGT 59.301 50.000 0.00 0.00 0.00 4.69
2119 2214 2.963782 ACAATATGGTACTCCCTCCGTC 59.036 50.000 0.00 0.00 0.00 4.79
2120 2215 2.299297 CAATATGGTACTCCCTCCGTCC 59.701 54.545 0.00 0.00 0.00 4.79
2121 2216 0.186873 TATGGTACTCCCTCCGTCCC 59.813 60.000 0.00 0.00 0.00 4.46
2122 2217 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
2123 2218 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
2124 2219 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
2125 2220 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
2126 2221 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
2127 2222 3.501019 GGTACTCCCTCCGTCCCATAATA 60.501 52.174 0.00 0.00 0.00 0.98
2128 2223 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2129 2224 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2130 2225 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2131 2226 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2132 2227 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2133 2228 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2134 2229 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2135 2230 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2136 2231 4.813027 TCCGTCCCATAATATAAGAACGC 58.187 43.478 0.00 0.00 0.00 4.84
2137 2232 4.525487 TCCGTCCCATAATATAAGAACGCT 59.475 41.667 0.00 0.00 0.00 5.07
2138 2233 5.011329 TCCGTCCCATAATATAAGAACGCTT 59.989 40.000 0.00 0.00 38.15 4.68
2139 2234 6.209192 TCCGTCCCATAATATAAGAACGCTTA 59.791 38.462 0.00 0.00 40.65 3.09
2140 2235 7.039882 CCGTCCCATAATATAAGAACGCTTAT 58.960 38.462 0.00 0.00 46.35 1.73
2152 2247 4.817517 AGAACGCTTATATTATGGGACGG 58.182 43.478 0.00 0.00 0.00 4.79
2153 2248 4.525487 AGAACGCTTATATTATGGGACGGA 59.475 41.667 0.00 0.00 0.00 4.69
2154 2249 4.451629 ACGCTTATATTATGGGACGGAG 57.548 45.455 0.00 0.00 0.00 4.63
2155 2250 3.194968 ACGCTTATATTATGGGACGGAGG 59.805 47.826 0.00 0.00 0.00 4.30
2156 2251 3.430374 CGCTTATATTATGGGACGGAGGG 60.430 52.174 0.00 0.00 0.00 4.30
2157 2252 3.773119 GCTTATATTATGGGACGGAGGGA 59.227 47.826 0.00 0.00 0.00 4.20
2170 2265 2.244252 ACGGAGGGAGTATGTCCTAACT 59.756 50.000 0.00 0.00 46.06 2.24
2180 2275 6.773685 GGAGTATGTCCTAACTCACTACATCT 59.226 42.308 5.00 0.00 43.21 2.90
2227 2322 4.506654 CCACTGCGTTACAACATCCTATAC 59.493 45.833 0.00 0.00 0.00 1.47
2255 2350 7.953005 TTCAGGAAATAAGTGGCAAATCATA 57.047 32.000 0.00 0.00 0.00 2.15
2281 2376 4.493547 TCCAAATAAATTGAAAGCCGCAG 58.506 39.130 0.00 0.00 41.85 5.18
2343 2438 7.060174 GCTAAGAAGCTATCGTCTATTCTTTCG 59.940 40.741 4.06 0.00 45.85 3.46
2495 2635 6.475504 CCTTTCTTTATTGCTGGGGATTTTT 58.524 36.000 0.00 0.00 0.00 1.94
2624 2764 2.851534 GTTTGAGTAGGATGCAAACGC 58.148 47.619 0.00 0.00 41.04 4.84
2727 2902 5.241403 AGAATCCCACAGACACAACATTA 57.759 39.130 0.00 0.00 0.00 1.90
2728 2903 5.003804 AGAATCCCACAGACACAACATTAC 58.996 41.667 0.00 0.00 0.00 1.89
2729 2904 4.640771 ATCCCACAGACACAACATTACT 57.359 40.909 0.00 0.00 0.00 2.24
2730 2905 4.002906 TCCCACAGACACAACATTACTC 57.997 45.455 0.00 0.00 0.00 2.59
2731 2906 3.074412 CCCACAGACACAACATTACTCC 58.926 50.000 0.00 0.00 0.00 3.85
2732 2907 3.074412 CCACAGACACAACATTACTCCC 58.926 50.000 0.00 0.00 0.00 4.30
2733 2908 3.244561 CCACAGACACAACATTACTCCCT 60.245 47.826 0.00 0.00 0.00 4.20
2734 2909 3.997021 CACAGACACAACATTACTCCCTC 59.003 47.826 0.00 0.00 0.00 4.30
2735 2910 3.008049 ACAGACACAACATTACTCCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
2736 2911 2.233922 AGACACAACATTACTCCCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
2737 2912 1.975680 ACACAACATTACTCCCTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
2738 2913 3.167485 ACACAACATTACTCCCTCCGTA 58.833 45.455 0.00 0.00 0.00 4.02
2739 2914 3.579586 ACACAACATTACTCCCTCCGTAA 59.420 43.478 0.00 0.00 0.00 3.18
2740 2915 4.040706 ACACAACATTACTCCCTCCGTAAA 59.959 41.667 0.00 0.00 31.36 2.01
2741 2916 4.390909 CACAACATTACTCCCTCCGTAAAC 59.609 45.833 0.00 0.00 31.36 2.01
2742 2917 4.285260 ACAACATTACTCCCTCCGTAAACT 59.715 41.667 0.00 0.00 31.36 2.66
2743 2918 5.481473 ACAACATTACTCCCTCCGTAAACTA 59.519 40.000 0.00 0.00 31.36 2.24
2744 2919 6.014327 ACAACATTACTCCCTCCGTAAACTAA 60.014 38.462 0.00 0.00 31.36 2.24
2745 2920 6.803366 ACATTACTCCCTCCGTAAACTAAT 57.197 37.500 0.00 0.00 31.36 1.73
2746 2921 7.902920 ACATTACTCCCTCCGTAAACTAATA 57.097 36.000 0.00 0.00 31.36 0.98
2747 2922 8.488308 ACATTACTCCCTCCGTAAACTAATAT 57.512 34.615 0.00 0.00 31.36 1.28
2748 2923 9.592196 ACATTACTCCCTCCGTAAACTAATATA 57.408 33.333 0.00 0.00 31.36 0.86
2751 2926 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2752 2927 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2753 2928 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2754 2929 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2755 2930 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2756 2931 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2757 2932 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2758 2933 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2759 2934 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2760 2935 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2797 2972 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2798 2973 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2799 2974 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2800 2975 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2813 2988 2.026822 CAGAGGGAGTACAAGCCAACAT 60.027 50.000 0.00 0.00 0.00 2.71
2871 3054 9.490379 TTTAAACACAAAAGGAAACAGCTTAAA 57.510 25.926 0.00 0.00 0.00 1.52
2973 3156 7.369607 TGGCACATAATATGAACAATGCATAC 58.630 34.615 7.33 0.00 31.28 2.39
3101 3286 2.312390 GTAGCCACTTCTCCTAGAGGG 58.688 57.143 0.00 0.00 35.41 4.30
3179 3365 4.445557 AGAGTTGGAAAAGAAGAAGGCT 57.554 40.909 0.00 0.00 0.00 4.58
3374 3560 5.008118 GGCATAAGAAGCACCTCAATCTTAC 59.992 44.000 0.00 0.00 37.25 2.34
3419 3606 9.221933 TCTGTGTAGTTGTTTTTCTTCTTTACA 57.778 29.630 0.00 0.00 0.00 2.41
3458 3645 6.657541 TCCTGTTTTCTGTGAGTTAAGTTTGT 59.342 34.615 0.00 0.00 0.00 2.83
3619 3815 5.363562 TCCCTCCATGATATCATACATGC 57.636 43.478 17.77 0.00 41.43 4.06
3638 3834 5.811100 ACATGCTGAATCATATATCTGCTCG 59.189 40.000 0.00 7.91 40.09 5.03
3674 3870 3.678056 TGTCTGTTGGGTCTGATGTAC 57.322 47.619 0.00 0.00 0.00 2.90
3683 3879 2.232941 GGGTCTGATGTACCGACTTCAA 59.767 50.000 0.00 0.00 38.77 2.69
3684 3880 3.118738 GGGTCTGATGTACCGACTTCAAT 60.119 47.826 0.00 0.00 38.77 2.57
3733 3929 6.128499 GCATATGATCTCTTCTTGACTCATGC 60.128 42.308 6.97 0.00 0.00 4.06
3736 3932 5.116882 TGATCTCTTCTTGACTCATGCATG 58.883 41.667 21.07 21.07 0.00 4.06
3739 3935 3.603532 TCTTCTTGACTCATGCATGGAC 58.396 45.455 25.97 16.43 0.00 4.02
3742 3938 4.025040 TCTTGACTCATGCATGGACTTT 57.975 40.909 25.97 6.50 0.00 2.66
3743 3939 5.164620 TCTTGACTCATGCATGGACTTTA 57.835 39.130 25.97 5.09 0.00 1.85
3744 3940 5.748402 TCTTGACTCATGCATGGACTTTAT 58.252 37.500 25.97 4.59 0.00 1.40
3745 3941 6.888105 TCTTGACTCATGCATGGACTTTATA 58.112 36.000 25.97 3.58 0.00 0.98
3822 4018 6.003950 GTCTTGGTAATGTGGGCATATGTAT 58.996 40.000 4.29 0.00 34.39 2.29
3826 4022 6.472016 TGGTAATGTGGGCATATGTATGTAG 58.528 40.000 4.29 0.00 36.11 2.74
3870 4066 3.208747 TCAAAGACAACAAGGGGACTC 57.791 47.619 0.00 0.00 42.68 3.36
3872 4068 3.053991 TCAAAGACAACAAGGGGACTCAA 60.054 43.478 0.00 0.00 42.68 3.02
3874 4070 1.843851 AGACAACAAGGGGACTCAACA 59.156 47.619 0.00 0.00 42.68 3.33
3896 4097 6.859017 ACAAATTTGAACCTAACAAGTTCGT 58.141 32.000 24.64 0.00 45.33 3.85
3900 4101 4.395959 TGAACCTAACAAGTTCGTCACT 57.604 40.909 0.00 0.00 45.33 3.41
3902 4103 3.107642 ACCTAACAAGTTCGTCACTGG 57.892 47.619 0.00 0.00 35.12 4.00
3964 4202 2.754552 TCTATGGCAGTTTTCACCATGC 59.245 45.455 4.04 0.00 43.93 4.06
3981 4219 3.552273 CCATGCTAGAGGATGCATTTTGC 60.552 47.826 0.00 1.05 46.29 3.68
3986 4224 1.749634 AGAGGATGCATTTTGCTGCTC 59.250 47.619 0.00 0.00 45.31 4.26
4010 4248 5.163488 CCATCAAGCTCCTTTGCATTTCATA 60.163 40.000 0.00 0.00 34.99 2.15
4012 4250 4.158394 TCAAGCTCCTTTGCATTTCATACC 59.842 41.667 0.00 0.00 34.99 2.73
4044 4282 7.922699 GGAATATTACATCCCTAGCCTCTAT 57.077 40.000 0.00 0.00 0.00 1.98
4051 4289 5.665701 ACATCCCTAGCCTCTATAATTCCA 58.334 41.667 0.00 0.00 0.00 3.53
4058 4296 4.455606 AGCCTCTATAATTCCACAAGTGC 58.544 43.478 0.00 0.00 0.00 4.40
4068 4306 1.102154 CCACAAGTGCACAAAGTCCA 58.898 50.000 21.04 0.00 0.00 4.02
4159 4397 1.933853 GGTGGCTAACATACAGAAGCG 59.066 52.381 0.00 0.00 35.79 4.68
4164 4402 4.757657 TGGCTAACATACAGAAGCGAAAAA 59.242 37.500 0.00 0.00 35.79 1.94
4191 4429 8.271458 TGGATCTTCACTACCATTGCTTAAATA 58.729 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 223 0.027586 GAAATGGCCGAACGATTCCG 59.972 55.000 0.00 0.00 42.50 4.30
318 328 1.899814 CTATATAAGCCGACCCCAGCA 59.100 52.381 0.00 0.00 0.00 4.41
655 668 0.831711 AGGGCTCAATTTTTGCCGGT 60.832 50.000 1.90 0.00 46.97 5.28
661 674 3.727726 CGTTTCCAAGGGCTCAATTTTT 58.272 40.909 0.00 0.00 0.00 1.94
679 692 1.512926 AAAATCAGCTCAGTCGCGTT 58.487 45.000 5.77 0.00 34.40 4.84
751 766 0.177604 CGGGAGCTCAGAGCATTTCT 59.822 55.000 24.64 2.66 45.56 2.52
754 769 1.053264 ATCCGGGAGCTCAGAGCATT 61.053 55.000 24.64 4.32 45.56 3.56
852 884 4.995487 CGTTAGCCTGGAGTAGAAGTTTTT 59.005 41.667 0.00 0.00 0.00 1.94
853 885 4.562963 CCGTTAGCCTGGAGTAGAAGTTTT 60.563 45.833 0.00 0.00 0.00 2.43
854 886 3.056035 CCGTTAGCCTGGAGTAGAAGTTT 60.056 47.826 0.00 0.00 0.00 2.66
855 887 2.496470 CCGTTAGCCTGGAGTAGAAGTT 59.504 50.000 0.00 0.00 0.00 2.66
856 888 2.100989 CCGTTAGCCTGGAGTAGAAGT 58.899 52.381 0.00 0.00 0.00 3.01
858 890 0.822164 GCCGTTAGCCTGGAGTAGAA 59.178 55.000 0.00 0.00 34.35 2.10
863 896 2.512515 GCTGCCGTTAGCCTGGAG 60.513 66.667 0.00 0.00 42.71 3.86
864 897 1.261938 TAAGCTGCCGTTAGCCTGGA 61.262 55.000 0.00 0.00 44.76 3.86
923 966 2.683867 ACTGTCTGTCACTAGCGATACC 59.316 50.000 0.00 0.00 0.00 2.73
1054 1103 2.651361 CACGTCCTTCTCTGCGGT 59.349 61.111 0.00 0.00 0.00 5.68
1162 1217 2.564947 GAGAGGAGAGGTTTGAAGAGCA 59.435 50.000 0.00 0.00 0.00 4.26
1163 1218 2.831526 AGAGAGGAGAGGTTTGAAGAGC 59.168 50.000 0.00 0.00 0.00 4.09
1164 1219 3.831911 ACAGAGAGGAGAGGTTTGAAGAG 59.168 47.826 0.00 0.00 0.00 2.85
1165 1220 3.850752 ACAGAGAGGAGAGGTTTGAAGA 58.149 45.455 0.00 0.00 0.00 2.87
1166 1221 4.314121 CAACAGAGAGGAGAGGTTTGAAG 58.686 47.826 0.00 0.00 0.00 3.02
1168 1223 2.037772 GCAACAGAGAGGAGAGGTTTGA 59.962 50.000 0.00 0.00 0.00 2.69
1169 1224 2.038295 AGCAACAGAGAGGAGAGGTTTG 59.962 50.000 0.00 0.00 0.00 2.93
1170 1225 2.038295 CAGCAACAGAGAGGAGAGGTTT 59.962 50.000 0.00 0.00 0.00 3.27
1171 1226 1.622811 CAGCAACAGAGAGGAGAGGTT 59.377 52.381 0.00 0.00 0.00 3.50
1172 1227 1.265236 CAGCAACAGAGAGGAGAGGT 58.735 55.000 0.00 0.00 0.00 3.85
1175 1230 2.604912 TACCAGCAACAGAGAGGAGA 57.395 50.000 0.00 0.00 0.00 3.71
1176 1231 3.685139 TTTACCAGCAACAGAGAGGAG 57.315 47.619 0.00 0.00 0.00 3.69
1177 1232 4.640771 AATTTACCAGCAACAGAGAGGA 57.359 40.909 0.00 0.00 0.00 3.71
1178 1233 5.241506 TGAAAATTTACCAGCAACAGAGAGG 59.758 40.000 0.00 0.00 0.00 3.69
1179 1234 6.317789 TGAAAATTTACCAGCAACAGAGAG 57.682 37.500 0.00 0.00 0.00 3.20
1183 1238 4.389687 GGCATGAAAATTTACCAGCAACAG 59.610 41.667 0.00 0.00 0.00 3.16
1185 1240 3.367630 CGGCATGAAAATTTACCAGCAAC 59.632 43.478 0.00 0.00 0.00 4.17
1186 1241 3.256879 TCGGCATGAAAATTTACCAGCAA 59.743 39.130 0.00 0.00 0.00 3.91
1187 1242 2.822561 TCGGCATGAAAATTTACCAGCA 59.177 40.909 0.00 0.00 0.00 4.41
1188 1243 3.502191 TCGGCATGAAAATTTACCAGC 57.498 42.857 0.00 0.00 0.00 4.85
1189 1244 4.035091 TCGATCGGCATGAAAATTTACCAG 59.965 41.667 16.41 0.00 0.00 4.00
1190 1245 3.942115 TCGATCGGCATGAAAATTTACCA 59.058 39.130 16.41 0.00 0.00 3.25
1191 1246 4.279659 GTCGATCGGCATGAAAATTTACC 58.720 43.478 16.20 0.00 0.00 2.85
1192 1247 4.035208 AGGTCGATCGGCATGAAAATTTAC 59.965 41.667 22.85 4.13 0.00 2.01
1193 1248 4.196193 AGGTCGATCGGCATGAAAATTTA 58.804 39.130 22.85 0.00 0.00 1.40
1194 1249 3.016736 AGGTCGATCGGCATGAAAATTT 58.983 40.909 22.85 0.00 0.00 1.82
1195 1250 2.614057 GAGGTCGATCGGCATGAAAATT 59.386 45.455 22.85 0.00 0.00 1.82
1196 1251 2.213499 GAGGTCGATCGGCATGAAAAT 58.787 47.619 22.85 0.00 0.00 1.82
1197 1252 1.651987 GAGGTCGATCGGCATGAAAA 58.348 50.000 22.85 0.00 0.00 2.29
1198 1253 0.179084 GGAGGTCGATCGGCATGAAA 60.179 55.000 22.85 0.00 0.00 2.69
1199 1254 1.326951 TGGAGGTCGATCGGCATGAA 61.327 55.000 22.85 1.32 0.00 2.57
1200 1255 1.738346 CTGGAGGTCGATCGGCATGA 61.738 60.000 22.85 2.08 0.00 3.07
1201 1256 1.300465 CTGGAGGTCGATCGGCATG 60.300 63.158 22.85 0.00 0.00 4.06
1202 1257 1.758514 ACTGGAGGTCGATCGGCAT 60.759 57.895 22.85 15.85 0.00 4.40
1203 1258 2.362503 ACTGGAGGTCGATCGGCA 60.363 61.111 22.85 0.00 0.00 5.69
1204 1259 2.105128 CACTGGAGGTCGATCGGC 59.895 66.667 16.41 14.41 0.00 5.54
1205 1260 2.105128 GCACTGGAGGTCGATCGG 59.895 66.667 16.41 0.00 0.00 4.18
1206 1261 2.105128 GGCACTGGAGGTCGATCG 59.895 66.667 9.36 9.36 0.00 3.69
1207 1262 2.105128 CGGCACTGGAGGTCGATC 59.895 66.667 0.00 0.00 0.00 3.69
1208 1263 4.148825 GCGGCACTGGAGGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
1211 1266 3.959991 GAAGGCGGCACTGGAGGTC 62.960 68.421 13.08 0.00 0.00 3.85
1212 1267 4.021925 GAAGGCGGCACTGGAGGT 62.022 66.667 13.08 0.00 0.00 3.85
1213 1268 3.710722 AGAAGGCGGCACTGGAGG 61.711 66.667 13.08 0.00 0.00 4.30
1214 1269 2.435586 CAGAAGGCGGCACTGGAG 60.436 66.667 21.80 3.80 0.00 3.86
1215 1270 4.704833 GCAGAAGGCGGCACTGGA 62.705 66.667 27.12 0.00 35.17 3.86
1225 1280 0.169672 CAGACATTTGCCGCAGAAGG 59.830 55.000 0.00 0.00 0.00 3.46
1226 1281 1.135859 GTCAGACATTTGCCGCAGAAG 60.136 52.381 0.00 0.00 0.00 2.85
1227 1282 0.874390 GTCAGACATTTGCCGCAGAA 59.126 50.000 0.00 0.00 0.00 3.02
1228 1283 1.291184 CGTCAGACATTTGCCGCAGA 61.291 55.000 0.41 0.00 0.00 4.26
1229 1284 1.133253 CGTCAGACATTTGCCGCAG 59.867 57.895 0.41 0.00 0.00 5.18
1230 1285 1.565156 GACGTCAGACATTTGCCGCA 61.565 55.000 11.55 0.00 0.00 5.69
1231 1286 1.132640 GACGTCAGACATTTGCCGC 59.867 57.895 11.55 0.00 0.00 6.53
1232 1287 1.006825 TCGACGTCAGACATTTGCCG 61.007 55.000 17.16 0.00 0.00 5.69
1233 1288 0.438830 GTCGACGTCAGACATTTGCC 59.561 55.000 25.25 6.12 38.42 4.52
1234 1289 1.136690 TGTCGACGTCAGACATTTGC 58.863 50.000 27.48 10.83 42.91 3.68
1240 1295 1.531912 CGGTTATGTCGACGTCAGAC 58.468 55.000 24.18 24.18 38.98 3.51
1241 1296 0.448990 CCGGTTATGTCGACGTCAGA 59.551 55.000 14.83 10.99 0.00 3.27
1242 1297 0.524816 CCCGGTTATGTCGACGTCAG 60.525 60.000 14.83 8.67 0.00 3.51
1243 1298 1.507630 CCCGGTTATGTCGACGTCA 59.492 57.895 14.83 0.00 0.00 4.35
1244 1299 1.875364 GCCCGGTTATGTCGACGTC 60.875 63.158 14.83 5.18 0.00 4.34
1245 1300 2.182537 GCCCGGTTATGTCGACGT 59.817 61.111 15.78 15.78 0.00 4.34
1246 1301 1.876714 CTGCCCGGTTATGTCGACG 60.877 63.158 11.62 0.00 0.00 5.12
1247 1302 1.520787 CCTGCCCGGTTATGTCGAC 60.521 63.158 9.11 9.11 0.00 4.20
1248 1303 1.259142 TTCCTGCCCGGTTATGTCGA 61.259 55.000 0.00 0.00 0.00 4.20
1249 1304 0.179056 ATTCCTGCCCGGTTATGTCG 60.179 55.000 0.00 0.00 0.00 4.35
1250 1305 2.922740 TATTCCTGCCCGGTTATGTC 57.077 50.000 0.00 0.00 0.00 3.06
1251 1306 3.876309 ATTATTCCTGCCCGGTTATGT 57.124 42.857 0.00 0.00 0.00 2.29
1252 1307 4.398319 AGAATTATTCCTGCCCGGTTATG 58.602 43.478 0.00 0.00 0.00 1.90
1253 1308 4.724279 AGAATTATTCCTGCCCGGTTAT 57.276 40.909 0.00 0.00 0.00 1.89
1254 1309 4.204012 CAAGAATTATTCCTGCCCGGTTA 58.796 43.478 0.00 0.00 0.00 2.85
1255 1310 3.023832 CAAGAATTATTCCTGCCCGGTT 58.976 45.455 0.00 0.00 0.00 4.44
1256 1311 2.654863 CAAGAATTATTCCTGCCCGGT 58.345 47.619 0.00 0.00 0.00 5.28
1257 1312 1.338020 GCAAGAATTATTCCTGCCCGG 59.662 52.381 15.46 0.00 40.41 5.73
1258 1313 2.781945 GCAAGAATTATTCCTGCCCG 57.218 50.000 15.46 0.00 40.41 6.13
1261 1316 2.223572 CCGTGGCAAGAATTATTCCTGC 60.224 50.000 17.46 17.46 44.43 4.85
1262 1317 3.016736 ACCGTGGCAAGAATTATTCCTG 58.983 45.455 0.76 0.11 0.00 3.86
1263 1318 3.366052 ACCGTGGCAAGAATTATTCCT 57.634 42.857 0.76 0.00 0.00 3.36
1264 1319 5.767816 ATTACCGTGGCAAGAATTATTCC 57.232 39.130 0.76 0.00 0.00 3.01
1265 1320 7.027778 AGAATTACCGTGGCAAGAATTATTC 57.972 36.000 0.76 5.37 0.00 1.75
1266 1321 8.514330 TTAGAATTACCGTGGCAAGAATTATT 57.486 30.769 0.76 0.00 0.00 1.40
1267 1322 8.514330 TTTAGAATTACCGTGGCAAGAATTAT 57.486 30.769 0.76 1.39 0.00 1.28
1268 1323 7.825270 TCTTTAGAATTACCGTGGCAAGAATTA 59.175 33.333 0.76 0.00 0.00 1.40
1269 1324 6.657541 TCTTTAGAATTACCGTGGCAAGAATT 59.342 34.615 0.76 0.85 0.00 2.17
1270 1325 6.177610 TCTTTAGAATTACCGTGGCAAGAAT 58.822 36.000 0.76 0.00 0.00 2.40
1271 1326 5.553123 TCTTTAGAATTACCGTGGCAAGAA 58.447 37.500 0.76 0.00 0.00 2.52
1272 1327 5.046878 TCTCTTTAGAATTACCGTGGCAAGA 60.047 40.000 0.76 0.00 0.00 3.02
1273 1328 5.175859 TCTCTTTAGAATTACCGTGGCAAG 58.824 41.667 0.00 0.00 0.00 4.01
1274 1329 5.155278 TCTCTTTAGAATTACCGTGGCAA 57.845 39.130 0.00 0.00 0.00 4.52
1275 1330 4.811969 TCTCTTTAGAATTACCGTGGCA 57.188 40.909 0.00 0.00 0.00 4.92
1276 1331 5.416947 TCTTCTCTTTAGAATTACCGTGGC 58.583 41.667 0.00 0.00 40.92 5.01
1277 1332 7.436673 CAGATCTTCTCTTTAGAATTACCGTGG 59.563 40.741 0.00 0.00 40.92 4.94
1278 1333 8.191446 TCAGATCTTCTCTTTAGAATTACCGTG 58.809 37.037 0.00 0.00 40.92 4.94
1279 1334 8.294954 TCAGATCTTCTCTTTAGAATTACCGT 57.705 34.615 0.00 0.00 40.92 4.83
1280 1335 8.625651 TCTCAGATCTTCTCTTTAGAATTACCG 58.374 37.037 0.00 0.00 40.92 4.02
1281 1336 9.744468 GTCTCAGATCTTCTCTTTAGAATTACC 57.256 37.037 0.00 0.00 40.92 2.85
1284 1339 9.820725 CATGTCTCAGATCTTCTCTTTAGAATT 57.179 33.333 0.00 0.00 40.92 2.17
1285 1340 7.927629 GCATGTCTCAGATCTTCTCTTTAGAAT 59.072 37.037 0.00 0.00 40.92 2.40
1286 1341 7.123997 AGCATGTCTCAGATCTTCTCTTTAGAA 59.876 37.037 0.00 0.00 39.47 2.10
1287 1342 6.606796 AGCATGTCTCAGATCTTCTCTTTAGA 59.393 38.462 0.00 0.00 29.16 2.10
1288 1343 6.808829 AGCATGTCTCAGATCTTCTCTTTAG 58.191 40.000 0.00 0.00 29.16 1.85
1289 1344 6.788598 AGCATGTCTCAGATCTTCTCTTTA 57.211 37.500 0.00 0.00 29.16 1.85
1290 1345 5.680594 AGCATGTCTCAGATCTTCTCTTT 57.319 39.130 0.00 0.00 29.16 2.52
1291 1346 6.406849 GGTTAGCATGTCTCAGATCTTCTCTT 60.407 42.308 0.00 0.00 29.16 2.85
1292 1347 5.068987 GGTTAGCATGTCTCAGATCTTCTCT 59.931 44.000 0.00 0.00 33.14 3.10
1293 1348 5.163468 TGGTTAGCATGTCTCAGATCTTCTC 60.163 44.000 0.00 0.00 0.00 2.87
1294 1349 4.713814 TGGTTAGCATGTCTCAGATCTTCT 59.286 41.667 0.00 0.00 0.00 2.85
1295 1350 5.016051 TGGTTAGCATGTCTCAGATCTTC 57.984 43.478 0.00 0.00 0.00 2.87
1296 1351 5.627182 ATGGTTAGCATGTCTCAGATCTT 57.373 39.130 0.00 0.00 0.00 2.40
1297 1352 5.366186 AGAATGGTTAGCATGTCTCAGATCT 59.634 40.000 0.00 0.00 0.00 2.75
1298 1353 5.609423 AGAATGGTTAGCATGTCTCAGATC 58.391 41.667 0.00 0.00 0.00 2.75
1299 1354 5.129980 TGAGAATGGTTAGCATGTCTCAGAT 59.870 40.000 22.46 0.00 37.25 2.90
1339 1394 2.099592 CCAGTTGGTCATGCGCATATTT 59.900 45.455 24.84 0.00 0.00 1.40
1341 1396 1.311859 CCAGTTGGTCATGCGCATAT 58.688 50.000 24.84 0.00 0.00 1.78
1342 1397 2.779282 CCAGTTGGTCATGCGCATA 58.221 52.632 24.84 4.13 0.00 3.14
1343 1398 3.594568 CCAGTTGGTCATGCGCAT 58.405 55.556 19.28 19.28 0.00 4.73
1351 1406 4.863083 ATGCACACATGAACCAGTTGGTC 61.863 47.826 3.92 0.00 40.81 4.02
1352 1407 3.016064 ATGCACACATGAACCAGTTGGT 61.016 45.455 0.00 0.00 42.54 3.67
1353 1408 1.031235 TGCACACATGAACCAGTTGG 58.969 50.000 0.00 0.00 42.17 3.77
1354 1409 2.293955 TGATGCACACATGAACCAGTTG 59.706 45.455 0.00 0.00 36.35 3.16
1355 1410 2.585330 TGATGCACACATGAACCAGTT 58.415 42.857 0.00 0.00 36.35 3.16
1356 1411 2.275134 TGATGCACACATGAACCAGT 57.725 45.000 0.00 0.00 36.35 4.00
1357 1412 2.937591 GTTGATGCACACATGAACCAG 58.062 47.619 0.00 0.00 42.52 4.00
1360 1415 2.294233 ACCAGTTGATGCACACATGAAC 59.706 45.455 0.00 0.85 46.91 3.18
1361 1416 2.293955 CACCAGTTGATGCACACATGAA 59.706 45.455 0.00 0.00 36.35 2.57
1362 1417 1.881324 CACCAGTTGATGCACACATGA 59.119 47.619 0.00 0.00 36.35 3.07
1363 1418 1.667756 GCACCAGTTGATGCACACATG 60.668 52.381 0.00 0.00 41.65 3.21
1364 1419 0.599558 GCACCAGTTGATGCACACAT 59.400 50.000 0.00 0.00 41.65 3.21
1365 1420 1.454572 GGCACCAGTTGATGCACACA 61.455 55.000 0.19 0.00 43.93 3.72
1366 1421 1.174712 AGGCACCAGTTGATGCACAC 61.175 55.000 0.19 0.00 43.93 3.82
1367 1422 1.151221 AGGCACCAGTTGATGCACA 59.849 52.632 0.19 0.00 43.93 4.57
1368 1423 1.174712 ACAGGCACCAGTTGATGCAC 61.175 55.000 0.19 0.00 43.93 4.57
1369 1424 0.890542 GACAGGCACCAGTTGATGCA 60.891 55.000 0.19 0.00 43.93 3.96
1380 1435 3.050275 GGCGAACAGGACAGGCAC 61.050 66.667 0.00 0.00 0.00 5.01
1407 1462 3.412386 ACTTGACTGAACCTTGTATGGC 58.588 45.455 0.00 0.00 0.00 4.40
1408 1463 4.452455 GTGACTTGACTGAACCTTGTATGG 59.548 45.833 0.00 0.00 0.00 2.74
1410 1465 5.300752 CAGTGACTTGACTGAACCTTGTAT 58.699 41.667 0.00 0.00 45.39 2.29
1411 1466 4.693283 CAGTGACTTGACTGAACCTTGTA 58.307 43.478 0.00 0.00 45.39 2.41
1412 1467 3.535561 CAGTGACTTGACTGAACCTTGT 58.464 45.455 0.00 0.00 45.39 3.16
1413 1468 2.289002 GCAGTGACTTGACTGAACCTTG 59.711 50.000 4.86 0.00 45.39 3.61
1414 1469 2.092968 TGCAGTGACTTGACTGAACCTT 60.093 45.455 4.86 0.00 45.39 3.50
1415 1470 1.486310 TGCAGTGACTTGACTGAACCT 59.514 47.619 4.86 0.00 45.39 3.50
1416 1471 1.599542 GTGCAGTGACTTGACTGAACC 59.400 52.381 4.86 0.00 44.14 3.62
1418 1473 1.486310 AGGTGCAGTGACTTGACTGAA 59.514 47.619 4.86 0.00 45.39 3.02
1432 1495 4.156556 GCAAAGTATCAGAAATCAGGTGCA 59.843 41.667 0.00 0.00 0.00 4.57
1476 1539 1.072505 GGGTGAGGTTTCTCGGCAA 59.927 57.895 0.00 0.00 42.79 4.52
1535 1598 3.253371 ACAAAGTTGAATCAGCGTTCG 57.747 42.857 0.00 0.00 0.00 3.95
1539 1602 3.904136 AGGAACAAAGTTGAATCAGCG 57.096 42.857 0.00 0.00 0.00 5.18
1541 1604 7.211966 AGATGAAGGAACAAAGTTGAATCAG 57.788 36.000 0.00 0.00 0.00 2.90
1562 1625 4.566545 CTGTATTCAGCAGAGACGAGAT 57.433 45.455 0.00 0.00 36.12 2.75
1607 1670 5.975344 CGACGTCTGAAAGCAGGTTATATTA 59.025 40.000 14.70 0.00 42.53 0.98
1639 1702 4.899502 TCATCTTCTCTGTTTCCACCTTC 58.100 43.478 0.00 0.00 0.00 3.46
1705 1768 7.847487 TGTTGTTGATAACTTACTTGTTCTCG 58.153 34.615 0.00 0.00 0.00 4.04
1729 1792 1.386533 GGGTGACAATGGATCTGCTG 58.613 55.000 0.00 0.00 0.00 4.41
1732 1795 1.097547 GCCGGGTGACAATGGATCTG 61.098 60.000 2.18 0.00 0.00 2.90
1733 1796 1.224592 GCCGGGTGACAATGGATCT 59.775 57.895 2.18 0.00 0.00 2.75
1734 1797 1.823899 GGCCGGGTGACAATGGATC 60.824 63.158 2.18 0.00 0.00 3.36
1747 1810 2.745884 TGCAGAATGAACGGCCGG 60.746 61.111 31.76 11.88 39.69 6.13
1748 1811 2.480555 GTGCAGAATGAACGGCCG 59.519 61.111 26.86 26.86 32.99 6.13
1812 1879 2.481441 TCCAGGGCTGACACTGAATAT 58.519 47.619 0.00 0.00 36.86 1.28
1853 1940 1.597663 GGTGTGACAACTTTCCAGTCG 59.402 52.381 0.00 0.00 35.09 4.18
1874 1961 6.934645 TCTTACTACAAAATAGCACAGCTTGT 59.065 34.615 0.00 0.00 40.44 3.16
1934 2024 4.675976 TGTTAAAGGTCCGAGTTGAGAA 57.324 40.909 0.00 0.00 0.00 2.87
1935 2025 4.527038 AGATGTTAAAGGTCCGAGTTGAGA 59.473 41.667 0.00 0.00 0.00 3.27
1936 2026 4.822026 AGATGTTAAAGGTCCGAGTTGAG 58.178 43.478 0.00 0.00 0.00 3.02
1937 2027 4.884668 AGATGTTAAAGGTCCGAGTTGA 57.115 40.909 0.00 0.00 0.00 3.18
1938 2028 6.164176 ACTAAGATGTTAAAGGTCCGAGTTG 58.836 40.000 0.00 0.00 0.00 3.16
1944 2034 4.876679 GCTGGACTAAGATGTTAAAGGTCC 59.123 45.833 10.83 10.83 41.22 4.46
1945 2035 4.876679 GGCTGGACTAAGATGTTAAAGGTC 59.123 45.833 0.00 0.00 0.00 3.85
1957 2047 0.608640 ACCTGAACGGCTGGACTAAG 59.391 55.000 9.79 0.00 38.83 2.18
1962 2052 1.533033 TGAGACCTGAACGGCTGGA 60.533 57.895 9.79 0.00 38.83 3.86
1963 2053 1.374758 GTGAGACCTGAACGGCTGG 60.375 63.158 0.00 2.64 41.12 4.85
1964 2054 0.946221 GTGTGAGACCTGAACGGCTG 60.946 60.000 0.00 0.00 35.61 4.85
1965 2055 1.367840 GTGTGAGACCTGAACGGCT 59.632 57.895 0.00 0.00 35.61 5.52
1966 2056 0.320771 ATGTGTGAGACCTGAACGGC 60.321 55.000 0.00 0.00 35.61 5.68
2016 2111 3.921119 TTATGGCACTGCAAAGTCTTG 57.079 42.857 2.82 0.00 35.49 3.02
2017 2112 4.768968 AGATTTATGGCACTGCAAAGTCTT 59.231 37.500 2.82 0.00 0.00 3.01
2057 2152 8.248945 AGGCTCTGAAGATCATTAACAAAAATG 58.751 33.333 0.00 0.00 38.05 2.32
2062 2157 6.155910 AGAGAGGCTCTGAAGATCATTAACAA 59.844 38.462 24.21 0.00 39.62 2.83
2067 2162 4.964262 AGAAGAGAGGCTCTGAAGATCATT 59.036 41.667 24.21 3.39 40.28 2.57
2102 2197 0.186873 GGGACGGAGGGAGTACCATA 59.813 60.000 0.00 0.00 42.20 2.74
2103 2198 1.075450 GGGACGGAGGGAGTACCAT 60.075 63.158 0.00 0.00 42.20 3.55
2104 2199 2.361771 GGGACGGAGGGAGTACCA 59.638 66.667 0.00 0.00 42.20 3.25
2105 2200 0.186873 TATGGGACGGAGGGAGTACC 59.813 60.000 0.00 0.00 42.94 3.34
2106 2201 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2108 2203 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2109 2204 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2110 2205 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2111 2206 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2112 2207 5.408356 CGTTCTTATATTATGGGACGGAGG 58.592 45.833 0.00 0.00 0.00 4.30
2113 2208 4.863131 GCGTTCTTATATTATGGGACGGAG 59.137 45.833 11.52 0.00 0.00 4.63
2114 2209 4.525487 AGCGTTCTTATATTATGGGACGGA 59.475 41.667 11.52 0.00 0.00 4.69
2115 2210 4.817517 AGCGTTCTTATATTATGGGACGG 58.182 43.478 11.52 0.00 0.00 4.79
2126 2221 8.192774 CCGTCCCATAATATAAGCGTTCTTATA 58.807 37.037 7.09 7.09 46.18 0.98
2127 2222 7.039882 CCGTCCCATAATATAAGCGTTCTTAT 58.960 38.462 3.46 3.46 45.02 1.73
2128 2223 6.209192 TCCGTCCCATAATATAAGCGTTCTTA 59.791 38.462 0.00 0.00 38.97 2.10
2129 2224 5.011329 TCCGTCCCATAATATAAGCGTTCTT 59.989 40.000 0.00 0.00 36.35 2.52
2130 2225 4.525487 TCCGTCCCATAATATAAGCGTTCT 59.475 41.667 0.00 0.00 0.00 3.01
2131 2226 4.813027 TCCGTCCCATAATATAAGCGTTC 58.187 43.478 0.00 0.00 0.00 3.95
2132 2227 4.322499 CCTCCGTCCCATAATATAAGCGTT 60.322 45.833 0.00 0.00 0.00 4.84
2133 2228 3.194968 CCTCCGTCCCATAATATAAGCGT 59.805 47.826 0.00 0.00 0.00 5.07
2134 2229 3.430374 CCCTCCGTCCCATAATATAAGCG 60.430 52.174 0.00 0.00 0.00 4.68
2135 2230 3.773119 TCCCTCCGTCCCATAATATAAGC 59.227 47.826 0.00 0.00 0.00 3.09
2136 2231 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2137 2232 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2138 2233 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2139 2234 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2140 2235 4.202749 ACATACTCCCTCCGTCCCATAATA 60.203 45.833 0.00 0.00 0.00 0.98
2141 2236 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
2142 2237 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
2143 2238 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
2144 2239 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2145 2240 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
2146 2241 1.114119 GGACATACTCCCTCCGTCCC 61.114 65.000 0.00 0.00 40.25 4.46
2147 2242 0.106116 AGGACATACTCCCTCCGTCC 60.106 60.000 0.00 0.00 45.34 4.79
2148 2243 2.622470 GTTAGGACATACTCCCTCCGTC 59.378 54.545 0.00 0.00 40.53 4.79
2149 2244 2.244252 AGTTAGGACATACTCCCTCCGT 59.756 50.000 0.00 0.00 40.53 4.69
2150 2245 2.885894 GAGTTAGGACATACTCCCTCCG 59.114 54.545 0.00 0.00 40.53 4.63
2151 2246 3.637694 GTGAGTTAGGACATACTCCCTCC 59.362 52.174 0.00 0.00 40.53 4.30
2152 2247 4.538738 AGTGAGTTAGGACATACTCCCTC 58.461 47.826 0.00 0.00 40.53 4.30
2153 2248 4.611564 AGTGAGTTAGGACATACTCCCT 57.388 45.455 0.00 0.00 40.53 4.20
2154 2249 5.198965 TGTAGTGAGTTAGGACATACTCCC 58.801 45.833 0.00 0.00 40.53 4.30
2155 2250 6.773685 AGATGTAGTGAGTTAGGACATACTCC 59.226 42.308 0.00 0.00 40.00 3.85
2156 2251 7.811117 AGATGTAGTGAGTTAGGACATACTC 57.189 40.000 0.00 0.00 40.89 2.59
2180 2275 5.424757 GGGCACTGACAGTAAACACATATA 58.575 41.667 8.02 0.00 0.00 0.86
2227 2322 6.773976 TTTGCCACTTATTTCCTGAATAGG 57.226 37.500 0.00 0.00 46.06 2.57
2255 2350 5.408299 GCGGCTTTCAATTTATTTGGAGTTT 59.592 36.000 0.00 0.00 35.92 2.66
2281 2376 4.332819 ACATAGACAGCAACGGATTAAAGC 59.667 41.667 0.00 0.00 0.00 3.51
2343 2438 1.609072 GCCTTCTTTGTGTTCTCCCAC 59.391 52.381 0.00 0.00 35.86 4.61
2601 2741 4.651994 CGTTTGCATCCTACTCAAACATC 58.348 43.478 14.69 0.00 45.74 3.06
2602 2742 3.119849 GCGTTTGCATCCTACTCAAACAT 60.120 43.478 14.69 0.00 45.74 2.71
2603 2743 2.225491 GCGTTTGCATCCTACTCAAACA 59.775 45.455 14.69 0.00 45.74 2.83
2604 2744 2.724839 CGCGTTTGCATCCTACTCAAAC 60.725 50.000 0.00 6.92 43.45 2.93
2606 2746 1.075542 CGCGTTTGCATCCTACTCAA 58.924 50.000 0.00 0.00 42.97 3.02
2607 2747 0.739462 CCGCGTTTGCATCCTACTCA 60.739 55.000 4.92 0.00 42.97 3.41
2623 2763 3.493503 TCGAAGAAAAGAAGAACTTCCGC 59.506 43.478 10.41 0.00 40.33 5.54
2624 2764 4.982916 TCTCGAAGAAAAGAAGAACTTCCG 59.017 41.667 10.41 6.03 36.70 4.30
2651 2791 4.517285 TGTGGCAAGAGTCAATAGATTCC 58.483 43.478 0.00 0.00 31.34 3.01
2727 2902 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2728 2903 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2729 2904 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2730 2905 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2731 2906 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2732 2907 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2733 2908 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2734 2909 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2771 2946 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2772 2947 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2773 2948 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2774 2949 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2775 2950 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2781 2956 8.422566 GCTTGTACTCCCTCTGTAAACTAATAT 58.577 37.037 0.00 0.00 0.00 1.28
2782 2957 7.147776 GGCTTGTACTCCCTCTGTAAACTAATA 60.148 40.741 0.00 0.00 0.00 0.98
2783 2958 6.351966 GGCTTGTACTCCCTCTGTAAACTAAT 60.352 42.308 0.00 0.00 0.00 1.73
2784 2959 5.046807 GGCTTGTACTCCCTCTGTAAACTAA 60.047 44.000 0.00 0.00 0.00 2.24
2785 2960 4.465305 GGCTTGTACTCCCTCTGTAAACTA 59.535 45.833 0.00 0.00 0.00 2.24
2786 2961 3.261137 GGCTTGTACTCCCTCTGTAAACT 59.739 47.826 0.00 0.00 0.00 2.66
2787 2962 3.007614 TGGCTTGTACTCCCTCTGTAAAC 59.992 47.826 0.00 0.00 0.00 2.01
2788 2963 3.244582 TGGCTTGTACTCCCTCTGTAAA 58.755 45.455 0.00 0.00 0.00 2.01
2789 2964 2.897350 TGGCTTGTACTCCCTCTGTAA 58.103 47.619 0.00 0.00 0.00 2.41
2790 2965 2.565834 GTTGGCTTGTACTCCCTCTGTA 59.434 50.000 0.00 0.00 0.00 2.74
2791 2966 1.348036 GTTGGCTTGTACTCCCTCTGT 59.652 52.381 0.00 0.00 0.00 3.41
2792 2967 1.347707 TGTTGGCTTGTACTCCCTCTG 59.652 52.381 0.00 0.00 0.00 3.35
2793 2968 1.729586 TGTTGGCTTGTACTCCCTCT 58.270 50.000 0.00 0.00 0.00 3.69
2794 2969 2.789409 ATGTTGGCTTGTACTCCCTC 57.211 50.000 0.00 0.00 0.00 4.30
2795 2970 4.650972 TTAATGTTGGCTTGTACTCCCT 57.349 40.909 0.00 0.00 0.00 4.20
2796 2971 4.765339 ACTTTAATGTTGGCTTGTACTCCC 59.235 41.667 0.00 0.00 0.00 4.30
2797 2972 5.959618 ACTTTAATGTTGGCTTGTACTCC 57.040 39.130 0.00 0.00 0.00 3.85
2798 2973 6.966021 TGAACTTTAATGTTGGCTTGTACTC 58.034 36.000 11.15 0.00 0.00 2.59
2799 2974 6.515035 GCTGAACTTTAATGTTGGCTTGTACT 60.515 38.462 11.15 0.00 0.00 2.73
2800 2975 5.629435 GCTGAACTTTAATGTTGGCTTGTAC 59.371 40.000 11.15 0.00 0.00 2.90
2805 2980 3.230134 TGGCTGAACTTTAATGTTGGCT 58.770 40.909 11.15 0.00 0.00 4.75
2813 2988 7.041030 TCGTTTCATGTTATGGCTGAACTTTAA 60.041 33.333 0.00 0.00 0.00 1.52
2871 3054 0.041238 TGGATCGGTCTTCCAGGACT 59.959 55.000 0.00 0.00 38.35 3.85
3018 3203 5.473504 GTCAAGGTCACCACAAGACATAAAT 59.526 40.000 0.00 0.00 37.74 1.40
3029 3214 1.618837 TCAGCTAGTCAAGGTCACCAC 59.381 52.381 0.00 0.00 32.16 4.16
3101 3286 4.550831 CGATCAGTGGACGCACATAAAATC 60.551 45.833 0.00 0.00 0.00 2.17
3179 3365 7.320399 TGTTCTTCATCTTCTCAGCGTATTTA 58.680 34.615 0.00 0.00 0.00 1.40
3374 3560 0.670546 AACAGATCACCTCCAACGCG 60.671 55.000 3.53 3.53 0.00 6.01
3418 3605 7.168637 CAGAAAACAGGACACATTTTCAGAATG 59.831 37.037 10.36 0.00 42.30 2.67
3419 3606 7.147846 ACAGAAAACAGGACACATTTTCAGAAT 60.148 33.333 10.36 0.00 42.30 2.40
3599 3795 5.985911 TCAGCATGTATGATATCATGGAGG 58.014 41.667 25.44 14.94 40.91 4.30
3619 3815 8.531622 AAAAGTCGAGCAGATATATGATTCAG 57.468 34.615 0.39 0.00 0.00 3.02
3631 3827 6.260050 ACATTACAAAAGAAAAGTCGAGCAGA 59.740 34.615 0.00 0.00 0.00 4.26
3638 3834 7.435192 CCCAACAGACATTACAAAAGAAAAGTC 59.565 37.037 0.00 0.00 0.00 3.01
3674 3870 2.253392 GCAGAAAGCATTGAAGTCGG 57.747 50.000 0.00 0.00 44.79 4.79
3745 3941 8.874156 TGTCATGGAAAGAGTAGCATCTTATAT 58.126 33.333 0.00 0.00 38.59 0.86
3822 4018 5.784023 TCCTGTATTCCTGTATTCCCTACA 58.216 41.667 0.00 0.00 38.02 2.74
3826 4022 9.213777 TGATATATCCTGTATTCCTGTATTCCC 57.786 37.037 10.25 0.00 0.00 3.97
3870 4066 7.274686 ACGAACTTGTTAGGTTCAAATTTGTTG 59.725 33.333 17.47 0.95 41.99 3.33
3872 4068 6.859017 ACGAACTTGTTAGGTTCAAATTTGT 58.141 32.000 17.47 1.31 41.99 2.83
3874 4070 6.970613 GTGACGAACTTGTTAGGTTCAAATTT 59.029 34.615 7.24 0.00 41.99 1.82
3896 4097 7.495279 CCAAATTTTGAACTGAAAATCCAGTGA 59.505 33.333 10.72 0.00 45.82 3.41
3900 4101 7.563906 AGACCAAATTTTGAACTGAAAATCCA 58.436 30.769 10.72 0.00 35.01 3.41
3902 4103 8.647143 TGAGACCAAATTTTGAACTGAAAATC 57.353 30.769 10.72 0.00 35.01 2.17
3981 4219 1.743958 CAAAGGAGCTTGATGGAGCAG 59.256 52.381 0.00 0.00 45.12 4.24
3986 4224 3.056393 TGAAATGCAAAGGAGCTTGATGG 60.056 43.478 0.00 0.00 34.99 3.51
4044 4282 4.037446 GGACTTTGTGCACTTGTGGAATTA 59.963 41.667 19.41 0.00 0.00 1.40
4051 4289 3.784338 CAAATGGACTTTGTGCACTTGT 58.216 40.909 19.41 13.49 36.62 3.16
4058 4296 6.700960 TCTTGTTTATGCAAATGGACTTTGTG 59.299 34.615 0.00 0.00 45.05 3.33
4068 4306 8.586570 TTCGTCAAAATCTTGTTTATGCAAAT 57.413 26.923 0.00 0.00 33.94 2.32
4159 4397 6.753744 GCAATGGTAGTGAAGATCCATTTTTC 59.246 38.462 5.67 0.00 44.88 2.29
4164 4402 4.785346 AGCAATGGTAGTGAAGATCCAT 57.215 40.909 0.00 0.00 41.68 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.