Multiple sequence alignment - TraesCS6D01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G219400 chr6D 100.000 7935 0 0 1 7935 309578891 309586825 0.000000e+00 14654.0
1 TraesCS6D01G219400 chr6D 86.458 96 7 3 5505 5595 324520774 324520680 5.070000e-17 100.0
2 TraesCS6D01G219400 chr6B 96.130 7235 143 38 751 7932 477217178 477224328 0.000000e+00 11683.0
3 TraesCS6D01G219400 chr6B 85.449 646 62 12 2 643 477216536 477217153 1.870000e-180 643.0
4 TraesCS6D01G219400 chr6B 93.151 73 4 1 3999 4070 60105475 60105547 1.090000e-18 106.0
5 TraesCS6D01G219400 chr6B 93.939 66 4 0 4002 4067 204251320 204251255 5.070000e-17 100.0
6 TraesCS6D01G219400 chr6A 93.067 3260 184 21 752 3983 446294108 446297353 0.000000e+00 4730.0
7 TraesCS6D01G219400 chr6A 91.125 1645 112 18 5594 7234 446299307 446300921 0.000000e+00 2198.0
8 TraesCS6D01G219400 chr6A 92.683 1066 50 8 4062 5124 446297356 446298396 0.000000e+00 1511.0
9 TraesCS6D01G219400 chr6A 92.269 401 20 6 1 401 446293100 446293489 6.950000e-155 558.0
10 TraesCS6D01G219400 chr6A 87.052 363 24 9 5120 5463 446298938 446299296 9.660000e-104 388.0
11 TraesCS6D01G219400 chr6A 88.182 220 24 2 394 612 446293892 446294110 2.200000e-65 261.0
12 TraesCS6D01G219400 chr2A 87.854 247 30 0 2346 2592 612849847 612849601 2.800000e-74 291.0
13 TraesCS6D01G219400 chr2A 87.560 209 17 6 7265 7468 148595209 148595413 4.790000e-57 233.0
14 TraesCS6D01G219400 chr2A 91.429 70 5 1 3999 4068 413337924 413337992 2.360000e-15 95.3
15 TraesCS6D01G219400 chr2D 86.381 257 35 0 2336 2592 471220366 471220110 1.690000e-71 281.0
16 TraesCS6D01G219400 chr2D 91.892 111 9 0 645 755 157450363 157450253 1.070000e-33 156.0
17 TraesCS6D01G219400 chr2D 93.204 103 7 0 5694 5796 471217194 471217092 1.380000e-32 152.0
18 TraesCS6D01G219400 chr2D 91.071 112 9 1 642 752 299891604 299891715 4.960000e-32 150.0
19 TraesCS6D01G219400 chr2B 85.992 257 36 0 2336 2592 550403956 550403700 7.840000e-70 276.0
20 TraesCS6D01G219400 chr2B 93.204 103 7 0 5694 5796 550400873 550400771 1.380000e-32 152.0
21 TraesCS6D01G219400 chr2B 91.071 112 9 1 642 752 727715062 727714951 4.960000e-32 150.0
22 TraesCS6D01G219400 chr2B 88.172 93 10 1 5504 5595 622914013 622914105 8.420000e-20 110.0
23 TraesCS6D01G219400 chr2B 91.667 72 5 1 3994 4064 626111749 626111678 1.820000e-16 99.0
24 TraesCS6D01G219400 chr2B 95.161 62 3 0 4005 4066 666468153 666468092 1.820000e-16 99.0
25 TraesCS6D01G219400 chrUn 86.256 211 18 7 7265 7468 275538073 275537867 1.340000e-52 219.0
26 TraesCS6D01G219400 chrUn 86.190 210 19 6 7265 7468 418475648 418475443 1.340000e-52 219.0
27 TraesCS6D01G219400 chrUn 85.308 211 20 7 7265 7468 231460847 231460641 2.900000e-49 207.0
28 TraesCS6D01G219400 chr7A 86.538 208 17 7 7265 7466 19560552 19560754 1.340000e-52 219.0
29 TraesCS6D01G219400 chr7A 85.849 212 21 6 7261 7468 726415042 726414836 4.820000e-52 217.0
30 TraesCS6D01G219400 chr7A 91.781 73 5 1 3994 4065 476204666 476204738 5.070000e-17 100.0
31 TraesCS6D01G219400 chr7A 92.647 68 5 0 3999 4066 573430895 573430962 1.820000e-16 99.0
32 TraesCS6D01G219400 chr4A 86.190 210 19 6 7265 7468 656781321 656781526 1.340000e-52 219.0
33 TraesCS6D01G219400 chr4A 91.667 108 9 0 645 752 676876969 676876862 4.960000e-32 150.0
34 TraesCS6D01G219400 chr3A 86.700 203 19 5 7265 7464 29432216 29432019 1.340000e-52 219.0
35 TraesCS6D01G219400 chr3A 86.538 104 8 4 5500 5598 130843934 130843832 8.420000e-20 110.0
36 TraesCS6D01G219400 chr3D 91.150 113 9 1 642 753 536881595 536881483 1.380000e-32 152.0
37 TraesCS6D01G219400 chr4D 91.071 112 9 1 642 752 474374262 474374151 4.960000e-32 150.0
38 TraesCS6D01G219400 chr1B 91.071 112 9 1 642 752 647530574 647530685 4.960000e-32 150.0
39 TraesCS6D01G219400 chr1B 83.636 110 11 3 5494 5602 606319220 606319323 6.550000e-16 97.1
40 TraesCS6D01G219400 chr4B 90.179 112 10 1 642 752 406389346 406389457 2.310000e-30 145.0
41 TraesCS6D01G219400 chr3B 89.076 119 10 2 645 763 201313474 201313359 2.310000e-30 145.0
42 TraesCS6D01G219400 chr3B 84.536 97 9 4 5504 5595 609305090 609304995 3.050000e-14 91.6
43 TraesCS6D01G219400 chr5D 85.577 104 12 3 5494 5595 297053650 297053752 1.090000e-18 106.0
44 TraesCS6D01G219400 chr5D 84.259 108 9 5 5504 5607 11305357 11305254 1.820000e-16 99.0
45 TraesCS6D01G219400 chr5B 86.598 97 8 3 5504 5595 575975736 575975640 1.410000e-17 102.0
46 TraesCS6D01G219400 chr7B 92.647 68 5 0 3999 4066 533773420 533773487 1.820000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G219400 chr6D 309578891 309586825 7934 False 14654.000000 14654 100.000000 1 7935 1 chr6D.!!$F1 7934
1 TraesCS6D01G219400 chr6B 477216536 477224328 7792 False 6163.000000 11683 90.789500 2 7932 2 chr6B.!!$F2 7930
2 TraesCS6D01G219400 chr6A 446293100 446300921 7821 False 1607.666667 4730 90.729667 1 7234 6 chr6A.!!$F1 7233
3 TraesCS6D01G219400 chr2D 471217092 471220366 3274 True 216.500000 281 89.792500 2336 5796 2 chr2D.!!$R2 3460
4 TraesCS6D01G219400 chr2B 550400771 550403956 3185 True 214.000000 276 89.598000 2336 5796 2 chr2B.!!$R4 3460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 836 0.032813 CATTCCCATGACCCAGCCTT 60.033 55.000 0.00 0.00 31.07 4.35 F
427 838 0.039618 TTCCCATGACCCAGCCTTTC 59.960 55.000 0.00 0.00 0.00 2.62 F
1330 1745 1.068434 CAAAATCACCACCACCACCAC 59.932 52.381 0.00 0.00 0.00 4.16 F
2793 3221 0.254178 ATCGAATGCTGCCTCCTGTT 59.746 50.000 0.00 0.00 0.00 3.16 F
3359 3854 2.049156 CCAAGAGAGTCGCGCACA 60.049 61.111 8.75 0.00 0.00 4.57 F
4326 5602 2.367894 GGGTTACATGTCTAGCCTACCC 59.632 54.545 17.42 12.85 37.41 3.69 F
6177 8146 2.287909 GCACCACCATCGTTTTGCTTTA 60.288 45.455 0.00 0.00 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2328 0.248539 GTAGAGATGGCGACCGACAC 60.249 60.000 0.0 0.0 35.10 3.67 R
2240 2667 4.438744 CGACATTAACCAAAGATCCAAGGC 60.439 45.833 0.0 0.0 0.00 4.35 R
2828 3257 1.489481 TGGGATGTCTGTAGAGCCAG 58.511 55.000 0.0 0.0 0.00 4.85 R
3985 5259 3.354467 ACACTAGAAGTAACGGAGGGAG 58.646 50.000 0.0 0.0 0.00 4.30 R
5033 6429 4.144731 GCAATGAGTTCGAAACAGAAAACG 59.855 41.667 0.0 0.0 0.00 3.60 R
6232 8201 1.327303 GGACTGGTGGTTTTGATGCA 58.673 50.000 0.0 0.0 0.00 3.96 R
7581 9584 0.108138 GATGAGTTCCACCAGGGTCG 60.108 60.000 0.0 0.0 38.11 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 1.682451 GCTGTGGTATAGTGGGCCGA 61.682 60.000 0.00 0.00 0.00 5.54
181 182 2.674380 CCCTCAGCTGCACCCAAC 60.674 66.667 9.47 0.00 0.00 3.77
265 266 2.098614 ACTGGTGAAACACATGCAACA 58.901 42.857 0.00 0.00 39.98 3.33
283 284 7.003939 TGCAACAATTATTCACGAGATACAG 57.996 36.000 0.00 0.00 0.00 2.74
421 832 3.502164 GGACATTCCCATGACCCAG 57.498 57.895 0.00 0.00 38.81 4.45
422 833 0.753111 GGACATTCCCATGACCCAGC 60.753 60.000 0.00 0.00 38.81 4.85
425 836 0.032813 CATTCCCATGACCCAGCCTT 60.033 55.000 0.00 0.00 31.07 4.35
427 838 0.039618 TTCCCATGACCCAGCCTTTC 59.960 55.000 0.00 0.00 0.00 2.62
437 849 4.476846 TGACCCAGCCTTTCTATTATGGAA 59.523 41.667 0.00 0.00 0.00 3.53
444 856 7.232127 CCAGCCTTTCTATTATGGAAATGTCAT 59.768 37.037 4.28 0.00 33.12 3.06
514 926 1.667724 CTTGGTTCGATCTGCCATGTC 59.332 52.381 0.00 0.00 31.71 3.06
532 944 2.304470 TGTCGATGAATCCCTGTTTGGA 59.696 45.455 0.00 0.00 39.18 3.53
539 951 4.803452 TGAATCCCTGTTTGGAAACTTCT 58.197 39.130 4.02 0.00 38.10 2.85
548 960 6.353404 TGTTTGGAAACTTCTTCAAGGTTT 57.647 33.333 4.02 0.00 39.84 3.27
583 995 6.015918 AGGATAATTTGGTGTGGTGATTTCA 58.984 36.000 0.00 0.00 0.00 2.69
594 1006 5.470098 GTGTGGTGATTTCAGCTTTAGAAGA 59.530 40.000 10.74 0.00 44.12 2.87
603 1015 7.944729 TTTCAGCTTTAGAAGATTATGGCTT 57.055 32.000 0.00 0.00 0.00 4.35
610 1024 9.890352 GCTTTAGAAGATTATGGCTTGATTTAG 57.110 33.333 0.00 0.00 0.00 1.85
626 1040 7.330208 GCTTGATTTAGTTTTCGTCTACCAGTA 59.670 37.037 0.00 0.00 0.00 2.74
643 1057 8.143835 TCTACCAGTACAAGGTTTGTTTAGTAC 58.856 37.037 14.25 0.00 42.22 2.73
646 1060 7.928167 ACCAGTACAAGGTTTGTTTAGTACTAC 59.072 37.037 0.91 0.00 42.22 2.73
647 1061 7.115378 CCAGTACAAGGTTTGTTTAGTACTACG 59.885 40.741 0.91 0.00 42.22 3.51
648 1062 7.115378 CAGTACAAGGTTTGTTTAGTACTACGG 59.885 40.741 0.91 0.00 42.22 4.02
651 1065 6.647895 ACAAGGTTTGTTTAGTACTACGGATG 59.352 38.462 0.91 0.00 42.22 3.51
652 1066 6.350629 AGGTTTGTTTAGTACTACGGATGT 57.649 37.500 0.91 0.00 0.00 3.06
653 1067 7.466746 AGGTTTGTTTAGTACTACGGATGTA 57.533 36.000 0.91 0.00 0.00 2.29
655 1069 9.189156 AGGTTTGTTTAGTACTACGGATGTATA 57.811 33.333 0.91 0.00 0.00 1.47
656 1070 9.971922 GGTTTGTTTAGTACTACGGATGTATAT 57.028 33.333 0.91 0.00 0.00 0.86
671 1085 9.643693 ACGGATGTATATAAACGTATTTTAGGG 57.356 33.333 0.00 0.00 33.04 3.53
672 1086 9.643693 CGGATGTATATAAACGTATTTTAGGGT 57.356 33.333 0.00 0.00 33.04 4.34
683 1097 9.457436 AAACGTATTTTAGGGTGTAGATTCATT 57.543 29.630 0.00 0.00 0.00 2.57
684 1098 8.658499 ACGTATTTTAGGGTGTAGATTCATTC 57.342 34.615 0.00 0.00 0.00 2.67
685 1099 8.262227 ACGTATTTTAGGGTGTAGATTCATTCA 58.738 33.333 0.00 0.00 0.00 2.57
686 1100 9.273016 CGTATTTTAGGGTGTAGATTCATTCAT 57.727 33.333 0.00 0.00 0.00 2.57
691 1105 6.212888 AGGGTGTAGATTCATTCATTTTGC 57.787 37.500 0.00 0.00 0.00 3.68
692 1106 5.954150 AGGGTGTAGATTCATTCATTTTGCT 59.046 36.000 0.00 0.00 0.00 3.91
693 1107 6.096001 AGGGTGTAGATTCATTCATTTTGCTC 59.904 38.462 0.00 0.00 0.00 4.26
694 1108 6.096001 GGGTGTAGATTCATTCATTTTGCTCT 59.904 38.462 0.00 0.00 0.00 4.09
695 1109 6.971184 GGTGTAGATTCATTCATTTTGCTCTG 59.029 38.462 0.00 0.00 0.00 3.35
696 1110 7.362401 GGTGTAGATTCATTCATTTTGCTCTGT 60.362 37.037 0.00 0.00 0.00 3.41
697 1111 8.668353 GTGTAGATTCATTCATTTTGCTCTGTA 58.332 33.333 0.00 0.00 0.00 2.74
698 1112 9.399797 TGTAGATTCATTCATTTTGCTCTGTAT 57.600 29.630 0.00 0.00 0.00 2.29
699 1113 9.661187 GTAGATTCATTCATTTTGCTCTGTATG 57.339 33.333 0.00 0.00 0.00 2.39
700 1114 8.289939 AGATTCATTCATTTTGCTCTGTATGT 57.710 30.769 0.00 0.00 0.00 2.29
701 1115 9.399797 AGATTCATTCATTTTGCTCTGTATGTA 57.600 29.630 0.00 0.00 0.00 2.29
706 1120 9.791820 CATTCATTTTGCTCTGTATGTAATTCA 57.208 29.630 0.00 0.00 0.00 2.57
712 1126 9.665719 TTTTGCTCTGTATGTAATTCATAGTGA 57.334 29.630 0.00 0.00 39.36 3.41
713 1127 9.665719 TTTGCTCTGTATGTAATTCATAGTGAA 57.334 29.630 0.00 0.00 41.09 3.18
714 1128 9.665719 TTGCTCTGTATGTAATTCATAGTGAAA 57.334 29.630 0.00 0.00 40.12 2.69
715 1129 9.836864 TGCTCTGTATGTAATTCATAGTGAAAT 57.163 29.630 0.00 0.00 40.12 2.17
746 1160 9.819267 AGAAAGACTTATATTTAGAAACGGAGG 57.181 33.333 0.00 0.00 0.00 4.30
747 1161 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
748 1162 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
749 1163 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
750 1164 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
1008 1423 1.282157 CCACTTCCCCTTTCCGATCTT 59.718 52.381 0.00 0.00 0.00 2.40
1197 1612 4.742201 CCACCAGCAGACGTCGGG 62.742 72.222 17.45 15.67 0.00 5.14
1330 1745 1.068434 CAAAATCACCACCACCACCAC 59.932 52.381 0.00 0.00 0.00 4.16
1336 1751 2.595463 CACCACCACCACCAGCAG 60.595 66.667 0.00 0.00 0.00 4.24
1371 1786 1.298157 CTGCGGCGAAACCAGATCAA 61.298 55.000 12.98 0.00 39.03 2.57
1584 2009 2.161855 CTGATGCTAAGCAACCCACAA 58.838 47.619 0.00 0.00 43.62 3.33
1664 2089 9.621629 AAACATCGGGTAACTAATGAATCATTA 57.378 29.630 14.24 14.24 35.54 1.90
1873 2298 4.021719 TGTTTCTGGAGTTAGGGTACTTCG 60.022 45.833 0.00 0.00 0.00 3.79
1902 2328 5.649782 AGGAATACCTGAACTTTGCAATG 57.350 39.130 10.58 10.58 45.92 2.82
1913 2339 2.123988 TTTGCAATGTGTCGGTCGCC 62.124 55.000 0.00 0.00 0.00 5.54
1969 2395 4.154556 CGTGGTAAAAATTGTACCCACGAT 59.845 41.667 24.52 0.00 42.39 3.73
2215 2642 9.516314 GCATATTAAGAAACTTTGGTTATGGAC 57.484 33.333 0.00 0.00 34.90 4.02
2240 2667 7.176690 ACTTTTTATCCCCACAAGTGTTAGATG 59.823 37.037 0.00 0.00 0.00 2.90
2325 2752 6.407475 TGTGTCTTGATGTGATCGTTATTG 57.593 37.500 0.00 0.00 0.00 1.90
2618 3046 8.805175 CATCCTCACTTGATCTGATAGATACTT 58.195 37.037 0.00 0.00 34.53 2.24
2619 3047 8.402798 TCCTCACTTGATCTGATAGATACTTC 57.597 38.462 0.00 0.00 34.53 3.01
2793 3221 0.254178 ATCGAATGCTGCCTCCTGTT 59.746 50.000 0.00 0.00 0.00 3.16
3189 3682 2.304470 TGCTGACCATACTTTGCCACTA 59.696 45.455 0.00 0.00 0.00 2.74
3359 3854 2.049156 CCAAGAGAGTCGCGCACA 60.049 61.111 8.75 0.00 0.00 4.57
3396 4086 4.640771 ACTGTTGAAAGATGCCCTTAGA 57.359 40.909 0.00 0.00 34.00 2.10
3401 4091 6.173339 TGTTGAAAGATGCCCTTAGACTTAG 58.827 40.000 0.00 0.00 34.00 2.18
3404 4094 2.764269 AGATGCCCTTAGACTTAGCCA 58.236 47.619 0.00 0.00 0.00 4.75
3624 4438 6.488006 ACATAACTTGAGTTCATCAGCAAACT 59.512 34.615 0.00 0.00 39.68 2.66
3699 4969 7.087007 GCCTTAAGAAAACCATTTCAGAAGAG 58.913 38.462 3.36 7.42 46.03 2.85
3813 5084 4.168883 AGTAACTGCCCTTTCTAGTTCCT 58.831 43.478 0.00 0.00 36.22 3.36
3857 5128 9.743057 TTTTGAAATCAAACTGTAACATCGAAT 57.257 25.926 8.04 0.00 44.56 3.34
4114 5388 8.798859 AGATCATTGCTTAAGTTACTTGTGAT 57.201 30.769 8.00 7.51 0.00 3.06
4115 5389 9.236006 AGATCATTGCTTAAGTTACTTGTGATT 57.764 29.630 8.00 0.00 0.00 2.57
4116 5390 9.846248 GATCATTGCTTAAGTTACTTGTGATTT 57.154 29.630 8.00 0.00 0.00 2.17
4117 5391 9.630098 ATCATTGCTTAAGTTACTTGTGATTTG 57.370 29.630 8.00 0.04 0.00 2.32
4118 5392 8.629158 TCATTGCTTAAGTTACTTGTGATTTGT 58.371 29.630 8.00 0.00 0.00 2.83
4119 5393 8.693504 CATTGCTTAAGTTACTTGTGATTTGTG 58.306 33.333 8.00 0.00 0.00 3.33
4120 5394 7.561021 TGCTTAAGTTACTTGTGATTTGTGA 57.439 32.000 8.00 0.00 0.00 3.58
4213 5488 8.567285 AATTGAGTTATGGTTCCTAAAGACAG 57.433 34.615 0.00 0.00 0.00 3.51
4326 5602 2.367894 GGGTTACATGTCTAGCCTACCC 59.632 54.545 17.42 12.85 37.41 3.69
5009 6307 5.104235 AGGAACCTTGTTTGTACAGGTAAGT 60.104 40.000 4.31 0.00 35.85 2.24
5033 6429 6.699575 AATTATGTGTCTTCTGTATTGCCC 57.300 37.500 0.00 0.00 0.00 5.36
5041 6437 3.751175 TCTTCTGTATTGCCCGTTTTCTG 59.249 43.478 0.00 0.00 0.00 3.02
5045 6441 4.023536 TCTGTATTGCCCGTTTTCTGTTTC 60.024 41.667 0.00 0.00 0.00 2.78
5193 7138 7.945033 TTTATTTTGATGAAAAGGCACAGTC 57.055 32.000 0.00 0.00 34.53 3.51
5194 7139 4.320608 TTTTGATGAAAAGGCACAGTCC 57.679 40.909 0.00 0.00 0.00 3.85
5556 7520 8.964150 GCTGGTTTAGTACAAAGTACAATTTTG 58.036 33.333 9.68 0.00 40.48 2.44
5571 7535 9.908152 AGTACAATTTTGTATTAAACCAGCTTC 57.092 29.630 6.45 0.00 44.59 3.86
5847 7815 6.083630 ACCGTGACAATCAAATTTTCGTATG 58.916 36.000 0.00 0.00 0.00 2.39
5849 7817 7.095144 ACCGTGACAATCAAATTTTCGTATGTA 60.095 33.333 0.00 0.00 0.00 2.29
5893 7861 2.325583 TATCTGTTCCACAATCCCGC 57.674 50.000 0.00 0.00 0.00 6.13
6079 8047 7.576856 CGGACAGATTAAAAACTTAAGGGCAAT 60.577 37.037 7.53 0.00 0.00 3.56
6177 8146 2.287909 GCACCACCATCGTTTTGCTTTA 60.288 45.455 0.00 0.00 0.00 1.85
6232 8201 3.560025 CCACCCTGCTTCTACAGTCAAAT 60.560 47.826 0.00 0.00 35.83 2.32
6245 8214 4.370917 ACAGTCAAATGCATCAAAACCAC 58.629 39.130 0.00 0.00 0.00 4.16
6376 8345 0.395586 TGTGGCTGTTCCTTTGCACT 60.396 50.000 0.00 0.00 35.26 4.40
6463 8433 1.339631 CCCGAACACAGCCTTAATGGA 60.340 52.381 0.00 0.00 38.35 3.41
6530 8500 9.807921 ATGGTTTATCCTCGATATTTTGGTTAT 57.192 29.630 0.00 0.00 37.07 1.89
6577 8547 9.452065 CTGCTCTGATTTTTAATGATTCTCATG 57.548 33.333 0.00 0.00 37.15 3.07
7171 9172 5.296151 TCCATCACATTTGGATCTCCTAC 57.704 43.478 0.00 0.00 38.35 3.18
7200 9201 7.324935 ACATATCGGTATAACTGTGTGTGAAA 58.675 34.615 0.00 0.00 0.00 2.69
7350 9351 9.712305 ACCTCAAGTCTTGTGTAATATATATGC 57.288 33.333 12.30 0.00 0.00 3.14
7434 9437 2.432628 CCTCGGACGCCACAACTC 60.433 66.667 0.00 0.00 0.00 3.01
7444 9447 1.845809 GCCACAACTCGTCCTTGCTG 61.846 60.000 0.00 0.00 0.00 4.41
7501 9504 2.046892 CTCCTGTGCTTGTCCGGG 60.047 66.667 0.00 0.00 0.00 5.73
7528 9531 5.570205 TCTCTACATATCGACCTCTTCCT 57.430 43.478 0.00 0.00 0.00 3.36
7555 9558 2.570752 AGATTTCCTCTGCTTCTGCTCA 59.429 45.455 0.00 0.00 40.48 4.26
7581 9584 2.899339 GCGATGGCTGCCTCCTTC 60.899 66.667 21.03 10.32 35.83 3.46
7629 9632 2.353610 CCTGCATCAACTTGGGCCC 61.354 63.158 17.59 17.59 0.00 5.80
7663 9666 2.026301 CGCTAGGCCTCTACACGC 59.974 66.667 9.68 2.56 0.00 5.34
7755 9758 0.462759 CCGCACCCAGATCTTTCCTC 60.463 60.000 0.00 0.00 0.00 3.71
7756 9759 0.539051 CGCACCCAGATCTTTCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
7758 9761 1.134250 GCACCCAGATCTTTCCTCTCC 60.134 57.143 0.00 0.00 0.00 3.71
7759 9762 2.191400 CACCCAGATCTTTCCTCTCCA 58.809 52.381 0.00 0.00 0.00 3.86
7760 9763 2.170187 CACCCAGATCTTTCCTCTCCAG 59.830 54.545 0.00 0.00 0.00 3.86
7762 9765 1.140652 CCAGATCTTTCCTCTCCAGCC 59.859 57.143 0.00 0.00 0.00 4.85
7763 9766 1.836166 CAGATCTTTCCTCTCCAGCCA 59.164 52.381 0.00 0.00 0.00 4.75
7765 9768 3.117963 CAGATCTTTCCTCTCCAGCCATT 60.118 47.826 0.00 0.00 0.00 3.16
7766 9769 2.795231 TCTTTCCTCTCCAGCCATTG 57.205 50.000 0.00 0.00 0.00 2.82
7767 9770 1.101331 CTTTCCTCTCCAGCCATTGC 58.899 55.000 0.00 0.00 37.95 3.56
7768 9771 0.323725 TTTCCTCTCCAGCCATTGCC 60.324 55.000 0.00 0.00 38.69 4.52
7769 9772 2.515523 CCTCTCCAGCCATTGCCG 60.516 66.667 0.00 0.00 38.69 5.69
7770 9773 3.207669 CTCTCCAGCCATTGCCGC 61.208 66.667 0.00 0.00 38.69 6.53
7771 9774 4.802051 TCTCCAGCCATTGCCGCC 62.802 66.667 0.00 0.00 38.69 6.13
7773 9776 4.445710 TCCAGCCATTGCCGCCAT 62.446 61.111 0.00 0.00 38.69 4.40
7774 9777 3.908081 CCAGCCATTGCCGCCATC 61.908 66.667 0.00 0.00 38.69 3.51
7775 9778 2.831742 CAGCCATTGCCGCCATCT 60.832 61.111 0.00 0.00 38.69 2.90
7776 9779 2.517875 AGCCATTGCCGCCATCTC 60.518 61.111 0.00 0.00 38.69 2.75
7777 9780 2.517875 GCCATTGCCGCCATCTCT 60.518 61.111 0.00 0.00 0.00 3.10
7778 9781 2.842256 GCCATTGCCGCCATCTCTG 61.842 63.158 0.00 0.00 0.00 3.35
7779 9782 2.719979 CATTGCCGCCATCTCTGC 59.280 61.111 0.00 0.00 0.00 4.26
7780 9783 1.822613 CATTGCCGCCATCTCTGCT 60.823 57.895 0.00 0.00 0.00 4.24
7781 9784 0.533531 CATTGCCGCCATCTCTGCTA 60.534 55.000 0.00 0.00 0.00 3.49
7782 9785 0.399454 ATTGCCGCCATCTCTGCTAT 59.601 50.000 0.00 0.00 0.00 2.97
7783 9786 0.181114 TTGCCGCCATCTCTGCTATT 59.819 50.000 0.00 0.00 0.00 1.73
7784 9787 0.533531 TGCCGCCATCTCTGCTATTG 60.534 55.000 0.00 0.00 0.00 1.90
7785 9788 1.849976 GCCGCCATCTCTGCTATTGC 61.850 60.000 0.00 0.00 40.20 3.56
7828 9831 4.783621 GCCGCCATCCACTGCTCA 62.784 66.667 0.00 0.00 0.00 4.26
7859 9862 2.409870 CCACTGGAATTGAGCCGCC 61.410 63.158 0.00 0.00 0.00 6.13
7921 9924 0.036010 CGTGCTGGTCCTTCCATCTT 60.036 55.000 0.00 0.00 46.12 2.40
7932 9935 3.015327 CCTTCCATCTTTCAGAGCCTTG 58.985 50.000 0.00 0.00 0.00 3.61
7933 9936 2.795231 TCCATCTTTCAGAGCCTTGG 57.205 50.000 0.00 0.00 0.00 3.61
7934 9937 1.101331 CCATCTTTCAGAGCCTTGGC 58.899 55.000 2.97 2.97 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 1.303091 GGCGCGACAAGTATTTGGGT 61.303 55.000 12.10 0.00 38.66 4.51
172 173 1.068895 CTTGCAAGATTGTTGGGTGCA 59.931 47.619 22.31 0.00 43.12 4.57
181 182 5.444087 CGCAATGTGAATTCTTGCAAGATTG 60.444 40.000 28.89 25.48 44.21 2.67
265 266 6.161855 TCTGCCTGTATCTCGTGAATAATT 57.838 37.500 0.00 0.00 0.00 1.40
283 284 1.314730 TGAAAACCGGTTCTTCTGCC 58.685 50.000 27.35 13.38 0.00 4.85
353 354 2.621055 ACATAGGCGTGCTTGACAAAAA 59.379 40.909 0.00 0.00 0.00 1.94
489 901 4.214986 TGGCAGATCGAACCAAGAATTA 57.785 40.909 0.00 0.00 0.00 1.40
514 926 3.758554 AGTTTCCAAACAGGGATTCATCG 59.241 43.478 5.03 0.00 41.30 3.84
548 960 9.184523 CACACCAAATTATCCTGGTCTATTTTA 57.815 33.333 0.00 0.00 44.30 1.52
565 977 3.233507 AGCTGAAATCACCACACCAAAT 58.766 40.909 0.00 0.00 0.00 2.32
574 986 8.348507 CCATAATCTTCTAAAGCTGAAATCACC 58.651 37.037 0.00 0.00 0.00 4.02
583 995 8.530804 AAATCAAGCCATAATCTTCTAAAGCT 57.469 30.769 0.00 0.00 0.00 3.74
594 1006 8.281212 AGACGAAAACTAAATCAAGCCATAAT 57.719 30.769 0.00 0.00 0.00 1.28
603 1015 7.660112 TGTACTGGTAGACGAAAACTAAATCA 58.340 34.615 0.00 0.00 0.00 2.57
610 1024 4.625028 ACCTTGTACTGGTAGACGAAAAC 58.375 43.478 8.94 0.00 35.80 2.43
615 1029 3.986277 ACAAACCTTGTACTGGTAGACG 58.014 45.455 10.67 4.24 43.27 4.18
646 1060 9.643693 ACCCTAAAATACGTTTATATACATCCG 57.356 33.333 0.00 0.00 31.22 4.18
657 1071 9.457436 AATGAATCTACACCCTAAAATACGTTT 57.543 29.630 0.00 0.00 0.00 3.60
660 1074 8.657074 TGAATGAATCTACACCCTAAAATACG 57.343 34.615 0.00 0.00 0.00 3.06
665 1079 8.250332 GCAAAATGAATGAATCTACACCCTAAA 58.750 33.333 0.00 0.00 0.00 1.85
666 1080 7.615365 AGCAAAATGAATGAATCTACACCCTAA 59.385 33.333 0.00 0.00 0.00 2.69
668 1082 5.954150 AGCAAAATGAATGAATCTACACCCT 59.046 36.000 0.00 0.00 0.00 4.34
669 1083 6.096001 AGAGCAAAATGAATGAATCTACACCC 59.904 38.462 0.00 0.00 0.00 4.61
670 1084 6.971184 CAGAGCAAAATGAATGAATCTACACC 59.029 38.462 0.00 0.00 0.00 4.16
671 1085 7.533426 ACAGAGCAAAATGAATGAATCTACAC 58.467 34.615 0.00 0.00 0.00 2.90
672 1086 7.692460 ACAGAGCAAAATGAATGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
673 1087 9.661187 CATACAGAGCAAAATGAATGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
674 1088 9.399797 ACATACAGAGCAAAATGAATGAATCTA 57.600 29.630 0.00 0.00 0.00 1.98
675 1089 8.289939 ACATACAGAGCAAAATGAATGAATCT 57.710 30.769 0.00 0.00 0.00 2.40
680 1094 9.791820 TGAATTACATACAGAGCAAAATGAATG 57.208 29.630 0.00 0.00 0.00 2.67
686 1100 9.665719 TCACTATGAATTACATACAGAGCAAAA 57.334 29.630 0.00 0.00 40.07 2.44
687 1101 9.665719 TTCACTATGAATTACATACAGAGCAAA 57.334 29.630 0.00 0.00 40.07 3.68
688 1102 9.665719 TTTCACTATGAATTACATACAGAGCAA 57.334 29.630 0.00 0.00 36.11 3.91
689 1103 9.836864 ATTTCACTATGAATTACATACAGAGCA 57.163 29.630 0.00 0.00 36.11 4.26
720 1134 9.819267 CCTCCGTTTCTAAATATAAGTCTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
721 1135 9.043079 CCCTCCGTTTCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
722 1136 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
723 1137 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
724 1138 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
725 1139 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
726 1140 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
727 1141 8.858094 ACTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
728 1142 8.773033 ACTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
729 1143 9.512588 CTACTACTCCCTCCGTTTCTAAATATA 57.487 37.037 0.00 0.00 0.00 0.86
730 1144 8.003629 ACTACTACTCCCTCCGTTTCTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
731 1145 7.349598 ACTACTACTCCCTCCGTTTCTAAATA 58.650 38.462 0.00 0.00 0.00 1.40
732 1146 6.193504 ACTACTACTCCCTCCGTTTCTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
733 1147 5.574188 ACTACTACTCCCTCCGTTTCTAAA 58.426 41.667 0.00 0.00 0.00 1.85
734 1148 5.184892 ACTACTACTCCCTCCGTTTCTAA 57.815 43.478 0.00 0.00 0.00 2.10
735 1149 4.851639 ACTACTACTCCCTCCGTTTCTA 57.148 45.455 0.00 0.00 0.00 2.10
736 1150 3.735720 ACTACTACTCCCTCCGTTTCT 57.264 47.619 0.00 0.00 0.00 2.52
737 1151 4.522114 ACTACTACTACTCCCTCCGTTTC 58.478 47.826 0.00 0.00 0.00 2.78
738 1152 4.582973 ACTACTACTACTCCCTCCGTTT 57.417 45.455 0.00 0.00 0.00 3.60
739 1153 5.700402 TTACTACTACTACTCCCTCCGTT 57.300 43.478 0.00 0.00 0.00 4.44
740 1154 5.903198 ATTACTACTACTACTCCCTCCGT 57.097 43.478 0.00 0.00 0.00 4.69
741 1155 7.579761 AAAATTACTACTACTACTCCCTCCG 57.420 40.000 0.00 0.00 0.00 4.63
742 1156 8.420222 GGAAAAATTACTACTACTACTCCCTCC 58.580 40.741 0.00 0.00 0.00 4.30
743 1157 8.134261 CGGAAAAATTACTACTACTACTCCCTC 58.866 40.741 0.00 0.00 0.00 4.30
744 1158 7.617329 ACGGAAAAATTACTACTACTACTCCCT 59.383 37.037 0.00 0.00 0.00 4.20
745 1159 7.776107 ACGGAAAAATTACTACTACTACTCCC 58.224 38.462 0.00 0.00 0.00 4.30
746 1160 9.645059 AAACGGAAAAATTACTACTACTACTCC 57.355 33.333 0.00 0.00 0.00 3.85
1197 1612 2.339556 TATTGTTGCTGGTGCGCCC 61.340 57.895 15.15 6.44 43.34 6.13
1539 1964 1.134159 AGAAGCATCTCCCACAGCATC 60.134 52.381 0.00 0.00 0.00 3.91
1584 2009 7.865706 AGAAACATAGAATGCGGAAAACTAT 57.134 32.000 0.00 0.00 0.00 2.12
1902 2328 0.248539 GTAGAGATGGCGACCGACAC 60.249 60.000 0.00 0.00 35.10 3.67
2215 2642 7.538575 CATCTAACACTTGTGGGGATAAAAAG 58.461 38.462 5.72 0.00 0.00 2.27
2240 2667 4.438744 CGACATTAACCAAAGATCCAAGGC 60.439 45.833 0.00 0.00 0.00 4.35
2333 2761 6.821665 GGCAGTAACATCCTATACAAAGAACA 59.178 38.462 0.00 0.00 0.00 3.18
2618 3046 5.265989 GGTAATACATTTGACCCCCAAAGA 58.734 41.667 0.00 0.00 46.72 2.52
2619 3047 4.404394 GGGTAATACATTTGACCCCCAAAG 59.596 45.833 0.00 0.00 46.72 2.77
2828 3257 1.489481 TGGGATGTCTGTAGAGCCAG 58.511 55.000 0.00 0.00 0.00 4.85
3189 3682 5.126384 TGGGTTCGAAAACTTTTCAGAACAT 59.874 36.000 28.76 0.00 39.53 2.71
3359 3854 2.520069 ACAGTTCTCTGAGTCGGTGAT 58.480 47.619 4.32 0.00 43.76 3.06
3404 4094 6.418057 TTGTCAAAATAGGAGCCACATTTT 57.582 33.333 6.20 6.20 33.31 1.82
3585 4399 8.466798 ACTCAAGTTATGTTTGCAACTAAAGTT 58.533 29.630 0.00 0.00 39.12 2.66
3699 4969 6.072452 GGCATAGTCCAATAGCTACAAATTCC 60.072 42.308 0.00 0.00 0.00 3.01
3973 5247 3.907221 ACGGAGGGAGTACTATTTAGCA 58.093 45.455 0.00 0.00 0.00 3.49
3985 5259 3.354467 ACACTAGAAGTAACGGAGGGAG 58.646 50.000 0.00 0.00 0.00 4.30
3988 5262 6.696441 ATCTAACACTAGAAGTAACGGAGG 57.304 41.667 0.00 0.00 37.70 4.30
4036 5310 4.492646 ACCTCCATCCCAAAATTCTTGTT 58.507 39.130 0.00 0.00 0.00 2.83
4052 5326 5.834460 TCTCACTACCAACTATTACCTCCA 58.166 41.667 0.00 0.00 0.00 3.86
4208 5483 4.861196 TCAGCTTCAGGTACTATCTGTCT 58.139 43.478 0.00 0.00 36.02 3.41
4213 5488 5.967088 TGTTTCTCAGCTTCAGGTACTATC 58.033 41.667 0.00 0.00 36.02 2.08
4285 5560 6.521151 ACCCAAGAGAAAATAGCTTCAATG 57.479 37.500 0.00 0.00 0.00 2.82
4386 5662 6.373774 AGACTACAGAAGCAAATTCATTCAGG 59.626 38.462 0.00 0.00 40.67 3.86
5009 6307 6.481976 CGGGCAATACAGAAGACACATAATTA 59.518 38.462 0.00 0.00 0.00 1.40
5033 6429 4.144731 GCAATGAGTTCGAAACAGAAAACG 59.855 41.667 0.00 0.00 0.00 3.60
5193 7138 6.313744 AGACCGAGTTAAAATTTCAAGTGG 57.686 37.500 0.00 0.00 0.00 4.00
5194 7139 9.543018 GATTAGACCGAGTTAAAATTTCAAGTG 57.457 33.333 0.00 0.00 0.00 3.16
5560 7524 8.494433 AGATCCATATTAACTGAAGCTGGTTTA 58.506 33.333 5.52 0.00 0.00 2.01
5563 7527 6.506538 AGATCCATATTAACTGAAGCTGGT 57.493 37.500 0.00 0.00 0.00 4.00
5565 7529 7.038729 TCCCTAGATCCATATTAACTGAAGCTG 60.039 40.741 0.00 0.00 0.00 4.24
5566 7530 7.019388 TCCCTAGATCCATATTAACTGAAGCT 58.981 38.462 0.00 0.00 0.00 3.74
5568 7532 8.429237 ACTCCCTAGATCCATATTAACTGAAG 57.571 38.462 0.00 0.00 0.00 3.02
5570 7534 8.679725 ACTACTCCCTAGATCCATATTAACTGA 58.320 37.037 0.00 0.00 0.00 3.41
5571 7535 8.887264 ACTACTCCCTAGATCCATATTAACTG 57.113 38.462 0.00 0.00 0.00 3.16
5893 7861 3.411351 CACGTTCCGAACAGGGCG 61.411 66.667 11.74 0.00 41.78 6.13
6058 8026 6.627287 GCCGATTGCCCTTAAGTTTTTAATCT 60.627 38.462 0.97 0.00 0.00 2.40
6124 8092 4.838642 CGTGTTCACGTGTAACAATGATTC 59.161 41.667 24.92 15.38 38.50 2.52
6232 8201 1.327303 GGACTGGTGGTTTTGATGCA 58.673 50.000 0.00 0.00 0.00 3.96
6308 8277 4.733972 CTCCGTTTTTCAGAGGAACTTC 57.266 45.455 0.00 0.00 41.55 3.01
6331 8300 5.476945 TGATTCCAAAGAAAAGGCTTCCTAC 59.523 40.000 0.00 0.00 35.09 3.18
6344 8313 2.957402 AGCCACACTGATTCCAAAGA 57.043 45.000 0.00 0.00 0.00 2.52
6376 8345 3.417069 TTCTTTCCTTCGGAGCATTCA 57.583 42.857 0.00 0.00 31.21 2.57
6530 8500 9.113838 GAGCAGGAAGAGATATTATGAACAAAA 57.886 33.333 0.00 0.00 0.00 2.44
6991 8992 7.823799 TGACAGTGAGCATATTTTCAGTCATTA 59.176 33.333 0.00 0.00 29.15 1.90
7171 9172 8.752254 CACACACAGTTATACCGATATGTAAAG 58.248 37.037 0.00 0.00 0.00 1.85
7181 9182 7.591006 ACTAATTTCACACACAGTTATACCG 57.409 36.000 0.00 0.00 0.00 4.02
7271 9272 9.536510 AGGACTCCTAGACCAATAATAATACTC 57.463 37.037 0.00 0.00 32.35 2.59
7434 9437 0.248661 ATCGATCGACAGCAAGGACG 60.249 55.000 22.06 0.00 0.00 4.79
7460 9463 1.466866 CGCAGATCGTACAGACCGAAA 60.467 52.381 0.00 0.00 37.93 3.46
7501 9504 5.310451 AGAGGTCGATATGTAGAGAAGTCC 58.690 45.833 0.00 0.00 0.00 3.85
7528 9531 5.183969 CAGAAGCAGAGGAAATCTTGATCA 58.816 41.667 0.00 0.00 35.47 2.92
7555 9558 1.589716 GCAGCCATCGCTTGGTCTTT 61.590 55.000 6.16 0.00 45.55 2.52
7574 9577 2.660064 CCACCAGGGTCGAAGGAGG 61.660 68.421 0.00 0.00 0.00 4.30
7581 9584 0.108138 GATGAGTTCCACCAGGGTCG 60.108 60.000 0.00 0.00 38.11 4.79
7629 9632 2.949106 GGCGCATCGATCCAATGG 59.051 61.111 10.83 0.00 0.00 3.16
7663 9666 3.774528 TGGCTGCCCAGTAGCGAG 61.775 66.667 17.53 0.00 42.02 5.03
7714 9717 0.109597 GCCAATGAAGAACACAGGCG 60.110 55.000 0.00 0.00 40.26 5.52
7756 9759 4.445710 ATGGCGGCAATGGCTGGA 62.446 61.111 18.31 0.00 46.85 3.86
7759 9762 2.517875 GAGATGGCGGCAATGGCT 60.518 61.111 18.31 11.27 40.87 4.75
7760 9763 2.517875 AGAGATGGCGGCAATGGC 60.518 61.111 18.31 6.05 40.13 4.40
7762 9765 0.533531 TAGCAGAGATGGCGGCAATG 60.534 55.000 18.31 13.69 36.08 2.82
7763 9766 0.399454 ATAGCAGAGATGGCGGCAAT 59.601 50.000 18.31 7.95 36.08 3.56
7765 9768 0.533531 CAATAGCAGAGATGGCGGCA 60.534 55.000 16.34 16.34 36.08 5.69
7766 9769 1.849976 GCAATAGCAGAGATGGCGGC 61.850 60.000 0.00 0.00 41.58 6.53
7767 9770 2.242113 GCAATAGCAGAGATGGCGG 58.758 57.895 0.00 0.00 41.58 6.13
7779 9782 0.250209 AGAGATGGCGGCTGCAATAG 60.250 55.000 21.31 0.00 45.35 1.73
7780 9783 0.250038 GAGAGATGGCGGCTGCAATA 60.250 55.000 21.31 5.25 45.35 1.90
7781 9784 1.525535 GAGAGATGGCGGCTGCAAT 60.526 57.895 21.31 14.86 45.35 3.56
7782 9785 2.124983 GAGAGATGGCGGCTGCAA 60.125 61.111 21.31 9.01 45.35 4.08
7783 9786 4.166888 GGAGAGATGGCGGCTGCA 62.167 66.667 21.31 5.95 45.35 4.41
7784 9787 1.825281 ATAGGAGAGATGGCGGCTGC 61.825 60.000 9.72 9.72 41.71 5.25
7785 9788 0.683973 AATAGGAGAGATGGCGGCTG 59.316 55.000 11.43 0.00 0.00 4.85
7786 9789 0.683973 CAATAGGAGAGATGGCGGCT 59.316 55.000 11.43 0.00 0.00 5.52
7824 9827 2.035442 GGGAGGCAACGACTTGAGC 61.035 63.158 0.00 0.00 46.39 4.26
7828 9831 1.071471 CAGTGGGAGGCAACGACTT 59.929 57.895 0.00 0.00 46.39 3.01
7911 9914 3.015327 CAAGGCTCTGAAAGATGGAAGG 58.985 50.000 0.00 0.00 45.62 3.46
7914 9917 1.340405 GCCAAGGCTCTGAAAGATGGA 60.340 52.381 3.29 0.00 45.62 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.