Multiple sequence alignment - TraesCS6D01G218400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G218400 chr6D 100.000 3380 0 0 1 3380 308598072 308594693 0.000000e+00 6242
1 TraesCS6D01G218400 chr6A 91.734 2480 130 36 331 2775 445359705 445357266 0.000000e+00 3374
2 TraesCS6D01G218400 chr6A 92.929 396 23 4 2898 3290 445357096 445356703 3.780000e-159 571
3 TraesCS6D01G218400 chr6A 92.233 103 7 1 3278 3380 445351485 445351384 9.770000e-31 145
4 TraesCS6D01G218400 chr6B 91.028 2140 103 34 703 2775 475818097 475815980 0.000000e+00 2806
5 TraesCS6D01G218400 chr6B 93.261 460 27 2 2922 3380 475815634 475815178 0.000000e+00 675
6 TraesCS6D01G218400 chr6B 81.935 310 46 6 4 310 475819264 475818962 1.560000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G218400 chr6D 308594693 308598072 3379 True 6242.0 6242 100.000000 1 3380 1 chr6D.!!$R1 3379
1 TraesCS6D01G218400 chr6A 445356703 445359705 3002 True 1972.5 3374 92.331500 331 3290 2 chr6A.!!$R2 2959
2 TraesCS6D01G218400 chr6B 475815178 475819264 4086 True 1245.0 2806 88.741333 4 3380 3 chr6B.!!$R1 3376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 209 0.250989 CCACAACCCACAACCCGTAT 60.251 55.0 0.0 0.0 0.0 3.06 F
1548 2088 0.250858 TCCTCCAACACCGTCGTCTA 60.251 55.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2526 0.107410 ACTTGCAGGTTCACGGAACA 60.107 50.000 15.57 0.0 43.54 3.18 R
3018 3844 2.082231 AGCTGAGTGCAAGCATAGTTG 58.918 47.619 11.29 0.0 45.94 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.600769 ACTGTCGCCGACCCTCTT 60.601 61.111 15.60 0.00 0.00 2.85
30 31 1.032114 CCGACCCTCTTGCCCAAATC 61.032 60.000 0.00 0.00 0.00 2.17
31 32 0.322456 CGACCCTCTTGCCCAAATCA 60.322 55.000 0.00 0.00 0.00 2.57
35 36 2.043526 ACCCTCTTGCCCAAATCAGAAT 59.956 45.455 0.00 0.00 0.00 2.40
36 37 3.269381 ACCCTCTTGCCCAAATCAGAATA 59.731 43.478 0.00 0.00 0.00 1.75
41 42 6.153340 CCTCTTGCCCAAATCAGAATAAGAAA 59.847 38.462 0.00 0.00 0.00 2.52
51 52 9.362539 CAAATCAGAATAAGAAACCAAATGGAG 57.637 33.333 6.42 0.00 38.94 3.86
75 76 1.491332 TGTCCGACAAGAAAAAGGGGA 59.509 47.619 0.00 0.00 0.00 4.81
79 80 1.263217 CGACAAGAAAAAGGGGACACG 59.737 52.381 0.00 0.00 0.00 4.49
89 90 3.036084 GGGACACGCACTGACACG 61.036 66.667 0.00 0.00 0.00 4.49
97 98 1.425267 CGCACTGACACGTGGACAAA 61.425 55.000 21.57 0.00 35.47 2.83
100 101 2.791158 GCACTGACACGTGGACAAAAAG 60.791 50.000 21.57 9.85 35.47 2.27
101 102 2.014128 ACTGACACGTGGACAAAAAGG 58.986 47.619 21.57 9.52 0.00 3.11
125 127 1.401409 CCTAGTTGCCACAAATGCACG 60.401 52.381 0.00 0.00 38.72 5.34
139 142 2.030562 CACGCGAAGGGACCAAGT 59.969 61.111 15.93 0.00 46.37 3.16
164 167 1.373590 AAACACGGCTCCACACACAC 61.374 55.000 0.00 0.00 0.00 3.82
168 171 2.534019 CGGCTCCACACACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
169 172 1.451207 GGCTCCACACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
170 173 1.714899 GGCTCCACACACACACACAC 61.715 60.000 0.00 0.00 0.00 3.82
171 174 1.024046 GCTCCACACACACACACACA 61.024 55.000 0.00 0.00 0.00 3.72
172 175 1.667236 CTCCACACACACACACACAT 58.333 50.000 0.00 0.00 0.00 3.21
173 176 1.331447 CTCCACACACACACACACATG 59.669 52.381 0.00 0.00 0.00 3.21
193 196 4.572571 TGGCCCACGACCCACAAC 62.573 66.667 0.00 0.00 0.00 3.32
197 200 2.593436 CCACGACCCACAACCCAC 60.593 66.667 0.00 0.00 0.00 4.61
203 206 2.909965 CCCACAACCCACAACCCG 60.910 66.667 0.00 0.00 0.00 5.28
204 207 2.124067 CCACAACCCACAACCCGT 60.124 61.111 0.00 0.00 0.00 5.28
206 209 0.250989 CCACAACCCACAACCCGTAT 60.251 55.000 0.00 0.00 0.00 3.06
207 210 1.161843 CACAACCCACAACCCGTATC 58.838 55.000 0.00 0.00 0.00 2.24
208 211 0.766131 ACAACCCACAACCCGTATCA 59.234 50.000 0.00 0.00 0.00 2.15
209 212 1.161843 CAACCCACAACCCGTATCAC 58.838 55.000 0.00 0.00 0.00 3.06
212 215 1.680487 CCACAACCCGTATCACCCA 59.320 57.895 0.00 0.00 0.00 4.51
213 216 0.392461 CCACAACCCGTATCACCCAG 60.392 60.000 0.00 0.00 0.00 4.45
215 218 0.838987 ACAACCCGTATCACCCAGGT 60.839 55.000 0.00 0.00 0.00 4.00
216 219 0.392461 CAACCCGTATCACCCAGGTG 60.392 60.000 10.73 10.73 46.64 4.00
217 220 2.189521 CCCGTATCACCCAGGTGC 59.810 66.667 12.16 0.00 45.04 5.01
219 222 2.367202 CCGTATCACCCAGGTGCCT 61.367 63.158 12.16 4.64 45.04 4.75
226 229 2.356667 CCCAGGTGCCTCCCTTTC 59.643 66.667 0.00 0.00 36.75 2.62
229 232 0.610232 CCAGGTGCCTCCCTTTCAAG 60.610 60.000 0.00 0.00 36.75 3.02
254 257 5.365895 GGGGCTTAGAGTTTTAGGAGATGTA 59.634 44.000 0.00 0.00 0.00 2.29
257 260 7.015779 GGGCTTAGAGTTTTAGGAGATGTATCT 59.984 40.741 0.00 0.00 40.50 1.98
328 331 6.980051 ACAAATATCACCTAAAACCGTCTC 57.020 37.500 0.00 0.00 0.00 3.36
335 586 5.299949 TCACCTAAAACCGTCTCCTAAAAC 58.700 41.667 0.00 0.00 0.00 2.43
341 592 8.285394 CCTAAAACCGTCTCCTAAAACTTTTAC 58.715 37.037 0.00 0.00 0.00 2.01
441 694 9.358872 CAGGAATTTCATAAAAGGTCTTAAAGC 57.641 33.333 0.00 0.00 0.00 3.51
455 708 8.414629 AGGTCTTAAAGCTCTTCAATTTGAAT 57.585 30.769 12.04 0.00 35.59 2.57
456 709 8.864087 AGGTCTTAAAGCTCTTCAATTTGAATT 58.136 29.630 12.04 6.28 35.59 2.17
457 710 9.481340 GGTCTTAAAGCTCTTCAATTTGAATTT 57.519 29.630 12.04 11.57 35.59 1.82
741 1256 3.690460 ACCGATTGGAAGCTTCTTGAAT 58.310 40.909 25.05 19.04 39.21 2.57
757 1272 3.485463 TGAATCTTCACAGAAACCGGT 57.515 42.857 0.00 0.00 30.76 5.28
780 1304 3.004734 CAGAAGCTTCACAAAACCGGATT 59.995 43.478 27.57 0.00 0.00 3.01
808 1332 2.381589 CTTTCGGAAACAGAAAACGCC 58.618 47.619 0.00 0.00 37.18 5.68
1382 1922 0.836400 TGACCTTCTCCGGCCTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
1520 2060 4.689549 TCGAGCTTCCCGACCCCA 62.690 66.667 0.00 0.00 0.00 4.96
1536 2076 1.228124 CCAACAACGCCTCCTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
1548 2088 0.250858 TCCTCCAACACCGTCGTCTA 60.251 55.000 0.00 0.00 0.00 2.59
1607 2147 3.359523 TCGACTCCACCGTCACCG 61.360 66.667 0.00 0.00 33.54 4.94
1621 2161 4.316823 ACCGAGGTGAGGCTCCCA 62.317 66.667 19.85 0.00 0.00 4.37
1718 2263 3.889196 TCGCGTTGTTTTATTTGAGCT 57.111 38.095 5.77 0.00 0.00 4.09
1742 2287 1.483004 TGTGGACCAAGTTCGAGTTGA 59.517 47.619 10.36 0.00 30.18 3.18
1841 2386 2.360852 GAGGGTCCGTGTCGAGGA 60.361 66.667 0.00 0.00 34.99 3.71
1896 2441 5.066375 CCGATCAATTAGAATTTGTGCAGGA 59.934 40.000 0.00 0.00 0.00 3.86
1936 2481 0.785979 CCGCTTTGAATTTGCAGTGC 59.214 50.000 8.58 8.58 0.00 4.40
2108 2659 2.105128 CACGGAGATGGAGGTCGC 59.895 66.667 0.00 0.00 0.00 5.19
2125 2676 2.962569 CCCTCGACGAACTGAGCA 59.037 61.111 0.00 0.00 0.00 4.26
2208 2759 2.409870 GGAGCTCAATGCCAACCCG 61.410 63.158 17.19 0.00 44.23 5.28
2211 2762 1.675641 GCTCAATGCCAACCCGACT 60.676 57.895 0.00 0.00 35.15 4.18
2297 2848 1.663702 CGGTCTTTTCTGTCGCCGT 60.664 57.895 0.00 0.00 35.11 5.68
2552 3127 1.831580 ACAGAAGAGAAGGGCATTGC 58.168 50.000 0.00 0.00 0.00 3.56
2594 3188 3.134458 AGTTCTGCTTCAGTAACAGTGC 58.866 45.455 0.00 0.00 32.61 4.40
2648 3242 6.141462 GCTAGATGCAAATTGTAAGATCAGC 58.859 40.000 0.00 0.00 42.31 4.26
2649 3243 5.165911 AGATGCAAATTGTAAGATCAGCG 57.834 39.130 0.00 0.00 0.00 5.18
2659 3253 0.177604 AAGATCAGCGCCTCTTGAGG 59.822 55.000 14.51 12.07 30.68 3.86
2783 3459 8.432013 TGAATGCAGGTGTTGATATACTAGAAT 58.568 33.333 0.00 0.00 0.00 2.40
2818 3494 8.567948 CACACTTGTCCAAATTTGTATAAGTCT 58.432 33.333 18.67 8.55 0.00 3.24
2833 3509 7.275183 TGTATAAGTCTTCAATGGACTCCATG 58.725 38.462 11.57 6.30 44.40 3.66
2868 3670 6.280855 TCAGCAAGACAGTAGCATTAGTTA 57.719 37.500 0.00 0.00 0.00 2.24
2897 3699 7.026631 TCTTAACAAAATCATAAGCCGATGG 57.973 36.000 0.00 0.00 0.00 3.51
2982 3808 4.415735 TCATGAGTCTCTGTTTCGAATCG 58.584 43.478 0.00 0.00 0.00 3.34
2989 3815 4.868734 GTCTCTGTTTCGAATCGGGTTAAT 59.131 41.667 13.71 0.00 0.00 1.40
3018 3844 3.161866 TGAAGTTTATGGCCCTTTGTCC 58.838 45.455 0.00 0.00 0.00 4.02
3037 3863 1.131883 CCAACTATGCTTGCACTCAGC 59.868 52.381 1.77 1.77 45.96 4.26
3059 3885 3.040147 ACCTGGTCATGTGAAGTTACG 57.960 47.619 0.00 0.00 0.00 3.18
3082 3908 4.216257 GCACAAATACACCTGAACTGACAT 59.784 41.667 0.00 0.00 0.00 3.06
3215 4042 4.162320 GGTGAGTCCAATCTCCATCAACTA 59.838 45.833 0.00 0.00 33.84 2.24
3255 4086 5.867903 AACAACTTCATGGGTTTTCATCA 57.132 34.783 0.00 0.00 0.00 3.07
3256 4087 6.423776 AACAACTTCATGGGTTTTCATCAT 57.576 33.333 0.00 0.00 0.00 2.45
3257 4088 6.029346 ACAACTTCATGGGTTTTCATCATC 57.971 37.500 0.00 0.00 0.00 2.92
3322 4153 5.284079 CACTTAGCAATATGAACATTGGCC 58.716 41.667 0.00 0.00 36.58 5.36
3332 4163 2.088423 GAACATTGGCCGTGTGGATAA 58.912 47.619 13.66 0.00 37.49 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.736896 GGGTCGGCGACAGTGGTC 62.737 72.222 37.13 20.64 40.77 4.02
2 3 4.436998 GAGGGTCGGCGACAGTGG 62.437 72.222 37.13 0.00 33.68 4.00
14 15 1.075601 TCTGATTTGGGCAAGAGGGT 58.924 50.000 0.00 0.00 0.00 4.34
21 22 5.083122 TGGTTTCTTATTCTGATTTGGGCA 58.917 37.500 0.00 0.00 0.00 5.36
24 25 8.313292 TCCATTTGGTTTCTTATTCTGATTTGG 58.687 33.333 0.00 0.00 36.34 3.28
30 31 7.452880 TGTCTCCATTTGGTTTCTTATTCTG 57.547 36.000 0.00 0.00 36.34 3.02
31 32 7.671398 ACATGTCTCCATTTGGTTTCTTATTCT 59.329 33.333 0.00 0.00 36.34 2.40
35 36 5.710099 GGACATGTCTCCATTTGGTTTCTTA 59.290 40.000 24.50 0.00 36.34 2.10
36 37 4.524328 GGACATGTCTCCATTTGGTTTCTT 59.476 41.667 24.50 0.00 36.34 2.52
41 42 1.628340 TCGGACATGTCTCCATTTGGT 59.372 47.619 24.50 0.00 36.34 3.67
51 52 3.058224 CCCTTTTTCTTGTCGGACATGTC 60.058 47.826 17.91 17.91 0.00 3.06
55 56 1.491332 TCCCCTTTTTCTTGTCGGACA 59.509 47.619 6.76 6.76 0.00 4.02
56 57 1.878088 GTCCCCTTTTTCTTGTCGGAC 59.122 52.381 0.00 0.00 0.00 4.79
57 58 1.491332 TGTCCCCTTTTTCTTGTCGGA 59.509 47.619 0.00 0.00 0.00 4.55
59 60 1.263217 CGTGTCCCCTTTTTCTTGTCG 59.737 52.381 0.00 0.00 0.00 4.35
79 80 0.730265 TTTTGTCCACGTGTCAGTGC 59.270 50.000 15.65 0.00 40.59 4.40
89 90 1.886542 CTAGGTGCCCTTTTTGTCCAC 59.113 52.381 0.00 0.00 34.61 4.02
92 93 2.288213 GCAACTAGGTGCCCTTTTTGTC 60.288 50.000 22.70 0.00 38.66 3.18
107 109 0.039617 GCGTGCATTTGTGGCAACTA 60.040 50.000 0.00 0.00 43.91 2.24
109 111 2.647381 CGCGTGCATTTGTGGCAAC 61.647 57.895 0.00 0.00 43.91 4.17
110 112 2.341807 TTCGCGTGCATTTGTGGCAA 62.342 50.000 5.77 0.00 43.91 4.52
117 119 2.332654 GGTCCCTTCGCGTGCATTT 61.333 57.895 5.77 0.00 0.00 2.32
125 127 0.606604 TCTACACTTGGTCCCTTCGC 59.393 55.000 0.00 0.00 0.00 4.70
139 142 1.139256 TGTGGAGCCGTGTTTTCTACA 59.861 47.619 0.00 0.00 31.16 2.74
151 154 1.451207 TGTGTGTGTGTGTGGAGCC 60.451 57.895 0.00 0.00 0.00 4.70
152 155 1.024046 TGTGTGTGTGTGTGTGGAGC 61.024 55.000 0.00 0.00 0.00 4.70
179 182 3.879885 TGGGTTGTGGGTCGTGGG 61.880 66.667 0.00 0.00 0.00 4.61
180 183 2.593436 GTGGGTTGTGGGTCGTGG 60.593 66.667 0.00 0.00 0.00 4.94
182 185 1.452470 GTTGTGGGTTGTGGGTCGT 60.452 57.895 0.00 0.00 0.00 4.34
184 187 1.830847 GGGTTGTGGGTTGTGGGTC 60.831 63.158 0.00 0.00 0.00 4.46
185 188 2.280753 GGGTTGTGGGTTGTGGGT 59.719 61.111 0.00 0.00 0.00 4.51
187 190 0.250989 ATACGGGTTGTGGGTTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
193 196 1.078001 GGGTGATACGGGTTGTGGG 60.078 63.158 0.00 0.00 0.00 4.61
197 200 0.392461 CACCTGGGTGATACGGGTTG 60.392 60.000 14.01 0.00 45.12 3.77
208 211 2.452491 AAAGGGAGGCACCTGGGT 60.452 61.111 0.00 0.00 40.87 4.51
209 212 2.080336 TTGAAAGGGAGGCACCTGGG 62.080 60.000 0.00 0.00 40.87 4.45
212 215 1.770324 CCTTGAAAGGGAGGCACCT 59.230 57.895 0.00 0.00 44.56 4.00
213 216 4.423231 CCTTGAAAGGGAGGCACC 57.577 61.111 0.76 0.00 42.66 5.01
226 229 3.265995 TCCTAAAACTCTAAGCCCCCTTG 59.734 47.826 0.00 0.00 32.47 3.61
229 232 3.113043 TCTCCTAAAACTCTAAGCCCCC 58.887 50.000 0.00 0.00 0.00 5.40
232 235 7.870445 CAGATACATCTCCTAAAACTCTAAGCC 59.130 40.741 0.00 0.00 34.22 4.35
238 241 9.308318 GTTTCTCAGATACATCTCCTAAAACTC 57.692 37.037 0.00 0.00 34.22 3.01
257 260 7.348274 ACCCCTCTTCATTCATATAGTTTCTCA 59.652 37.037 0.00 0.00 0.00 3.27
306 309 6.113411 AGGAGACGGTTTTAGGTGATATTTG 58.887 40.000 0.00 0.00 0.00 2.32
310 313 6.855763 TTTAGGAGACGGTTTTAGGTGATA 57.144 37.500 0.00 0.00 0.00 2.15
311 314 5.750352 TTTAGGAGACGGTTTTAGGTGAT 57.250 39.130 0.00 0.00 0.00 3.06
312 315 5.070847 AGTTTTAGGAGACGGTTTTAGGTGA 59.929 40.000 0.00 0.00 0.00 4.02
315 318 6.872628 AAAGTTTTAGGAGACGGTTTTAGG 57.127 37.500 0.00 0.00 0.00 2.69
316 319 8.006027 CGTAAAAGTTTTAGGAGACGGTTTTAG 58.994 37.037 18.84 0.00 0.00 1.85
317 320 7.708752 TCGTAAAAGTTTTAGGAGACGGTTTTA 59.291 33.333 21.15 2.12 0.00 1.52
318 321 6.538381 TCGTAAAAGTTTTAGGAGACGGTTTT 59.462 34.615 21.15 0.00 0.00 2.43
319 322 6.048509 TCGTAAAAGTTTTAGGAGACGGTTT 58.951 36.000 21.15 0.00 0.00 3.27
320 323 5.600696 TCGTAAAAGTTTTAGGAGACGGTT 58.399 37.500 21.15 0.00 0.00 4.44
321 324 5.200368 TCGTAAAAGTTTTAGGAGACGGT 57.800 39.130 21.15 0.00 0.00 4.83
323 326 6.936374 TGTTTCGTAAAAGTTTTAGGAGACG 58.064 36.000 28.22 21.58 31.01 4.18
324 327 8.134905 TCTGTTTCGTAAAAGTTTTAGGAGAC 57.865 34.615 27.91 27.91 0.00 3.36
335 586 8.855279 TGTGAACATTTTTCTGTTTCGTAAAAG 58.145 29.630 0.00 0.00 39.40 2.27
417 670 9.574458 GAGCTTTAAGACCTTTTATGAAATTCC 57.426 33.333 0.00 0.00 0.00 3.01
426 679 9.965824 CAAATTGAAGAGCTTTAAGACCTTTTA 57.034 29.630 0.00 0.00 0.00 1.52
722 1235 5.557891 AAGATTCAAGAAGCTTCCAATCG 57.442 39.130 22.81 7.27 42.67 3.34
741 1256 2.036387 TCTGACCGGTTTCTGTGAAGA 58.964 47.619 9.42 0.00 0.00 2.87
757 1272 1.946768 CCGGTTTTGTGAAGCTTCTGA 59.053 47.619 26.09 10.62 0.00 3.27
780 1304 3.799366 TCTGTTTCCGAAAGCTTACACA 58.201 40.909 0.00 0.00 0.00 3.72
898 1423 0.881118 TCGAGCCAATTCCTGTTTGC 59.119 50.000 0.00 0.00 0.00 3.68
963 1488 2.355115 GCCTCGGAATGGTGGGTT 59.645 61.111 0.00 0.00 0.00 4.11
964 1489 3.728373 GGCCTCGGAATGGTGGGT 61.728 66.667 0.00 0.00 0.00 4.51
965 1490 3.704231 CTGGCCTCGGAATGGTGGG 62.704 68.421 3.32 0.00 0.00 4.61
1193 1733 2.038813 TGGATGACGAGGAGCCCA 59.961 61.111 0.00 0.00 0.00 5.36
1382 1922 1.705002 CCCACCTCCTGTTGGTCACA 61.705 60.000 0.00 0.00 35.28 3.58
1520 2060 0.818040 GTGTTGGAGGAGGCGTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
1548 2088 2.429236 CGTCAGCGTCAGAAGCGT 60.429 61.111 2.40 0.00 40.04 5.07
1607 2147 1.194781 TCAGTTGGGAGCCTCACCTC 61.195 60.000 0.00 0.00 0.00 3.85
1621 2161 2.095059 GCAGCACAAATCGGAATCAGTT 60.095 45.455 0.00 0.00 0.00 3.16
1718 2263 1.613925 CTCGAACTTGGTCCACAGAGA 59.386 52.381 0.00 0.00 0.00 3.10
1742 2287 3.889815 TGGCTCTCAATTTCCATCGAAT 58.110 40.909 0.00 0.00 0.00 3.34
1841 2386 2.027561 TCATGATTCGGACGGGAAAACT 60.028 45.455 0.00 0.00 0.00 2.66
1936 2481 2.504367 AGAATCCCCGACAACAAGTTG 58.496 47.619 11.16 11.16 45.58 3.16
1981 2526 0.107410 ACTTGCAGGTTCACGGAACA 60.107 50.000 15.57 0.00 43.54 3.18
1982 2527 1.002792 GAACTTGCAGGTTCACGGAAC 60.003 52.381 30.40 7.57 43.40 3.62
2108 2659 1.153939 CTGCTCAGTTCGTCGAGGG 60.154 63.158 5.12 0.00 0.00 4.30
2208 2759 3.695606 TGGAGGACAGCGGCAGTC 61.696 66.667 16.20 16.20 35.29 3.51
2211 2762 2.803155 GAATGTGGAGGACAGCGGCA 62.803 60.000 1.45 0.00 38.23 5.69
2552 3127 6.467723 ACTCAGTCACGCTAATTAAAACAG 57.532 37.500 0.00 0.00 0.00 3.16
2594 3188 5.418310 AGCATAATACCGATTTTTCCACG 57.582 39.130 0.00 0.00 0.00 4.94
2659 3253 6.460123 CCAAATATGTATGGCACTTGGTCTTC 60.460 42.308 0.00 0.00 33.42 2.87
2783 3459 3.916359 TGGACAAGTGTGGTTTCTACA 57.084 42.857 0.00 0.00 0.00 2.74
2818 3494 4.801521 ATCATCCATGGAGTCCATTGAA 57.198 40.909 25.31 13.47 42.23 2.69
2868 3670 8.902806 TCGGCTTATGATTTTGTTAAGATGAAT 58.097 29.630 0.00 0.00 0.00 2.57
2878 3680 3.715628 GCCATCGGCTTATGATTTTGT 57.284 42.857 0.00 0.00 46.69 2.83
2910 3712 9.734620 GACAGCTGTTATATTTTGCATATTTGA 57.265 29.630 22.65 0.00 0.00 2.69
2911 3713 8.971321 GGACAGCTGTTATATTTTGCATATTTG 58.029 33.333 22.65 0.00 0.00 2.32
2916 3742 6.528537 TTGGACAGCTGTTATATTTTGCAT 57.471 33.333 22.65 0.00 0.00 3.96
2982 3808 7.920682 CCATAAACTTCATGCAACTATTAACCC 59.079 37.037 0.00 0.00 0.00 4.11
2989 3815 3.699038 GGGCCATAAACTTCATGCAACTA 59.301 43.478 4.39 0.00 0.00 2.24
3018 3844 2.082231 AGCTGAGTGCAAGCATAGTTG 58.918 47.619 11.29 0.00 45.94 3.16
3037 3863 4.174009 CGTAACTTCACATGACCAGGTAG 58.826 47.826 0.00 0.00 0.00 3.18
3059 3885 3.563808 TGTCAGTTCAGGTGTATTTGTGC 59.436 43.478 0.00 0.00 0.00 4.57
3082 3908 7.777440 TGTCTTTGTACAATATTGCCATATCCA 59.223 33.333 15.48 1.67 0.00 3.41
3172 3999 4.721776 CACCCTATATGGCTATATGGTGGT 59.278 45.833 22.24 18.87 44.62 4.16
3215 4042 7.823745 AGTTGTTTGAGATAGTTTTGGTGAT 57.176 32.000 0.00 0.00 0.00 3.06
3322 4153 8.657074 TCTCCTAACATTTAATTATCCACACG 57.343 34.615 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.