Multiple sequence alignment - TraesCS6D01G217400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G217400 chr6D 100.000 3912 0 0 1 3912 307114390 307110479 0.000000e+00 7225.0
1 TraesCS6D01G217400 chr6A 91.701 3169 126 55 117 3243 443418013 443414940 0.000000e+00 4268.0
2 TraesCS6D01G217400 chr6A 97.561 82 1 1 3513 3593 443414856 443414775 5.270000e-29 139.0
3 TraesCS6D01G217400 chr6A 97.619 42 1 0 3354 3395 443414923 443414882 5.420000e-09 73.1
4 TraesCS6D01G217400 chr6B 94.696 1433 57 10 1683 3112 474429434 474428018 0.000000e+00 2207.0
5 TraesCS6D01G217400 chr6B 89.667 1442 67 42 159 1582 474430811 474429434 0.000000e+00 1762.0
6 TraesCS6D01G217400 chr6B 83.235 680 50 35 3281 3912 474427617 474426954 2.040000e-157 566.0
7 TraesCS6D01G217400 chr1B 77.035 344 35 22 2782 3122 658517782 658517480 1.460000e-34 158.0
8 TraesCS6D01G217400 chr1B 100.000 29 0 0 3180 3208 658517363 658517335 2.000000e-03 54.7
9 TraesCS6D01G217400 chr4A 98.810 84 1 0 3453 3536 595271654 595271737 2.430000e-32 150.0
10 TraesCS6D01G217400 chr4A 95.699 93 3 1 3444 3536 595272804 595272895 8.760000e-32 148.0
11 TraesCS6D01G217400 chr2A 97.701 87 2 0 3452 3538 601729422 601729508 2.430000e-32 150.0
12 TraesCS6D01G217400 chr4D 87.407 135 9 1 2780 2914 414992485 414992611 8.760000e-32 148.0
13 TraesCS6D01G217400 chr4D 90.654 107 9 1 3457 3563 398275661 398275556 1.470000e-29 141.0
14 TraesCS6D01G217400 chr4D 78.448 116 3 10 3128 3235 414992857 414992958 5.460000e-04 56.5
15 TraesCS6D01G217400 chr4B 94.737 95 4 1 3444 3537 15414446 15414540 3.150000e-31 147.0
16 TraesCS6D01G217400 chr5B 94.681 94 3 2 3446 3538 11083083 11083175 1.130000e-30 145.0
17 TraesCS6D01G217400 chr3B 95.604 91 3 1 3459 3549 543724228 543724317 1.130000e-30 145.0
18 TraesCS6D01G217400 chr5A 93.750 96 4 2 3445 3538 598530174 598530079 4.070000e-30 143.0
19 TraesCS6D01G217400 chr2B 92.683 82 6 0 1311 1392 555779623 555779704 6.870000e-23 119.0
20 TraesCS6D01G217400 chr2B 92.308 39 3 0 3293 3331 480941301 480941263 5.460000e-04 56.5
21 TraesCS6D01G217400 chr2D 89.873 79 8 0 1311 1389 474676808 474676886 6.920000e-18 102.0
22 TraesCS6D01G217400 chr1D 92.308 65 5 0 3271 3335 467611054 467611118 4.160000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G217400 chr6D 307110479 307114390 3911 True 7225.000000 7225 100.000000 1 3912 1 chr6D.!!$R1 3911
1 TraesCS6D01G217400 chr6A 443414775 443418013 3238 True 1493.366667 4268 95.627000 117 3593 3 chr6A.!!$R1 3476
2 TraesCS6D01G217400 chr6B 474426954 474430811 3857 True 1511.666667 2207 89.199333 159 3912 3 chr6B.!!$R1 3753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.113190 TGGAGTCTCTGTCTCAGGCA 59.887 55.000 0.00 0.00 34.04 4.75 F
1035 1080 0.240411 GCAAGAAGCAGCAGGACAAG 59.760 55.000 0.00 0.00 44.79 3.16 F
1037 1082 0.892814 AAGAAGCAGCAGGACAAGCC 60.893 55.000 0.00 0.00 0.00 4.35 F
1911 1956 1.002251 GCCGAGATCGACGAGAATTCT 60.002 52.381 7.95 7.95 43.02 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1713 0.179108 GAACGGAGACCATCTTCCCG 60.179 60.000 0.00 0.0 45.09 5.14 R
1911 1956 2.076100 CTGCTGTTGTTATTGCGGAGA 58.924 47.619 0.00 0.0 34.02 3.71 R
2049 2094 2.930040 GCAATCTCCGTCGATTTCTGAA 59.070 45.455 0.00 0.0 31.52 3.02 R
3245 3378 0.034337 GGCACCGTGTTAACCTGAGA 59.966 55.000 2.48 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.512342 CTTTCAGCTTTGGATCATCTTCTT 57.488 37.500 0.00 0.00 0.00 2.52
24 25 6.906157 TTTCAGCTTTGGATCATCTTCTTT 57.094 33.333 0.00 0.00 0.00 2.52
25 26 5.892160 TCAGCTTTGGATCATCTTCTTTG 57.108 39.130 0.00 0.00 0.00 2.77
26 27 5.319453 TCAGCTTTGGATCATCTTCTTTGT 58.681 37.500 0.00 0.00 0.00 2.83
27 28 5.413833 TCAGCTTTGGATCATCTTCTTTGTC 59.586 40.000 0.00 0.00 0.00 3.18
28 29 5.415077 CAGCTTTGGATCATCTTCTTTGTCT 59.585 40.000 0.00 0.00 0.00 3.41
29 30 6.596888 CAGCTTTGGATCATCTTCTTTGTCTA 59.403 38.462 0.00 0.00 0.00 2.59
30 31 6.597280 AGCTTTGGATCATCTTCTTTGTCTAC 59.403 38.462 0.00 0.00 0.00 2.59
31 32 6.183360 GCTTTGGATCATCTTCTTTGTCTACC 60.183 42.308 0.00 0.00 0.00 3.18
32 33 6.627087 TTGGATCATCTTCTTTGTCTACCT 57.373 37.500 0.00 0.00 0.00 3.08
33 34 6.627087 TGGATCATCTTCTTTGTCTACCTT 57.373 37.500 0.00 0.00 0.00 3.50
34 35 7.733773 TGGATCATCTTCTTTGTCTACCTTA 57.266 36.000 0.00 0.00 0.00 2.69
35 36 7.786030 TGGATCATCTTCTTTGTCTACCTTAG 58.214 38.462 0.00 0.00 0.00 2.18
36 37 6.704050 GGATCATCTTCTTTGTCTACCTTAGC 59.296 42.308 0.00 0.00 0.00 3.09
37 38 5.978814 TCATCTTCTTTGTCTACCTTAGCC 58.021 41.667 0.00 0.00 0.00 3.93
38 39 5.483937 TCATCTTCTTTGTCTACCTTAGCCA 59.516 40.000 0.00 0.00 0.00 4.75
39 40 6.156949 TCATCTTCTTTGTCTACCTTAGCCAT 59.843 38.462 0.00 0.00 0.00 4.40
40 41 5.734720 TCTTCTTTGTCTACCTTAGCCATG 58.265 41.667 0.00 0.00 0.00 3.66
41 42 4.487714 TCTTTGTCTACCTTAGCCATGG 57.512 45.455 7.63 7.63 0.00 3.66
42 43 4.101114 TCTTTGTCTACCTTAGCCATGGA 58.899 43.478 18.40 0.00 0.00 3.41
43 44 4.162320 TCTTTGTCTACCTTAGCCATGGAG 59.838 45.833 18.40 3.56 0.00 3.86
44 45 3.116096 TGTCTACCTTAGCCATGGAGT 57.884 47.619 18.40 3.75 0.00 3.85
45 46 3.031736 TGTCTACCTTAGCCATGGAGTC 58.968 50.000 18.40 0.00 0.00 3.36
46 47 3.301274 GTCTACCTTAGCCATGGAGTCT 58.699 50.000 18.40 5.68 0.00 3.24
47 48 3.319689 GTCTACCTTAGCCATGGAGTCTC 59.680 52.174 18.40 0.00 0.00 3.36
48 49 2.559381 ACCTTAGCCATGGAGTCTCT 57.441 50.000 18.40 4.83 0.00 3.10
49 50 2.114616 ACCTTAGCCATGGAGTCTCTG 58.885 52.381 18.40 0.00 0.00 3.35
50 51 2.114616 CCTTAGCCATGGAGTCTCTGT 58.885 52.381 18.40 0.00 0.00 3.41
51 52 2.102252 CCTTAGCCATGGAGTCTCTGTC 59.898 54.545 18.40 0.00 0.00 3.51
52 53 2.836636 TAGCCATGGAGTCTCTGTCT 57.163 50.000 18.40 1.55 0.00 3.41
53 54 1.484038 AGCCATGGAGTCTCTGTCTC 58.516 55.000 18.40 0.00 0.00 3.36
54 55 1.189752 GCCATGGAGTCTCTGTCTCA 58.810 55.000 18.40 0.00 34.04 3.27
55 56 1.136695 GCCATGGAGTCTCTGTCTCAG 59.863 57.143 18.40 0.00 34.04 3.35
56 57 1.755959 CCATGGAGTCTCTGTCTCAGG 59.244 57.143 5.56 0.00 34.04 3.86
57 58 1.136695 CATGGAGTCTCTGTCTCAGGC 59.863 57.143 0.00 0.00 34.04 4.85
58 59 0.113190 TGGAGTCTCTGTCTCAGGCA 59.887 55.000 0.00 0.00 34.04 4.75
59 60 1.272928 TGGAGTCTCTGTCTCAGGCAT 60.273 52.381 0.00 0.00 34.04 4.40
60 61 2.024941 TGGAGTCTCTGTCTCAGGCATA 60.025 50.000 0.00 0.00 34.04 3.14
61 62 3.230134 GGAGTCTCTGTCTCAGGCATAT 58.770 50.000 0.00 0.00 34.04 1.78
62 63 3.640967 GGAGTCTCTGTCTCAGGCATATT 59.359 47.826 0.00 0.00 34.04 1.28
63 64 4.100808 GGAGTCTCTGTCTCAGGCATATTT 59.899 45.833 0.00 0.00 34.04 1.40
64 65 5.021033 AGTCTCTGTCTCAGGCATATTTG 57.979 43.478 0.00 0.00 31.51 2.32
65 66 4.469227 AGTCTCTGTCTCAGGCATATTTGT 59.531 41.667 0.00 0.00 31.51 2.83
66 67 5.046014 AGTCTCTGTCTCAGGCATATTTGTT 60.046 40.000 0.00 0.00 31.51 2.83
67 68 6.155221 AGTCTCTGTCTCAGGCATATTTGTTA 59.845 38.462 0.00 0.00 31.51 2.41
68 69 6.478344 GTCTCTGTCTCAGGCATATTTGTTAG 59.522 42.308 0.00 0.00 31.51 2.34
69 70 6.155221 TCTCTGTCTCAGGCATATTTGTTAGT 59.845 38.462 0.00 0.00 31.51 2.24
70 71 7.342026 TCTCTGTCTCAGGCATATTTGTTAGTA 59.658 37.037 0.00 0.00 31.51 1.82
71 72 7.265673 TCTGTCTCAGGCATATTTGTTAGTAC 58.734 38.462 0.00 0.00 31.51 2.73
72 73 6.346096 TGTCTCAGGCATATTTGTTAGTACC 58.654 40.000 0.00 0.00 0.00 3.34
73 74 5.462398 GTCTCAGGCATATTTGTTAGTACCG 59.538 44.000 0.00 0.00 0.00 4.02
74 75 5.128171 TCTCAGGCATATTTGTTAGTACCGT 59.872 40.000 0.00 0.00 0.00 4.83
75 76 6.321945 TCTCAGGCATATTTGTTAGTACCGTA 59.678 38.462 0.00 0.00 0.00 4.02
76 77 6.275335 TCAGGCATATTTGTTAGTACCGTAC 58.725 40.000 0.00 0.00 0.00 3.67
77 78 6.044046 CAGGCATATTTGTTAGTACCGTACA 58.956 40.000 11.26 0.00 0.00 2.90
78 79 6.704493 CAGGCATATTTGTTAGTACCGTACAT 59.296 38.462 11.26 0.00 0.00 2.29
79 80 6.704493 AGGCATATTTGTTAGTACCGTACATG 59.296 38.462 11.26 4.64 0.00 3.21
80 81 6.360329 GCATATTTGTTAGTACCGTACATGC 58.640 40.000 11.26 10.14 0.00 4.06
81 82 6.202188 GCATATTTGTTAGTACCGTACATGCT 59.798 38.462 11.26 0.00 0.00 3.79
82 83 7.568861 GCATATTTGTTAGTACCGTACATGCTC 60.569 40.741 11.26 0.00 0.00 4.26
83 84 5.395682 TTTGTTAGTACCGTACATGCTCT 57.604 39.130 11.26 0.00 0.00 4.09
84 85 5.395682 TTGTTAGTACCGTACATGCTCTT 57.604 39.130 11.26 0.00 0.00 2.85
85 86 4.990257 TGTTAGTACCGTACATGCTCTTC 58.010 43.478 11.26 0.00 0.00 2.87
86 87 4.142315 TGTTAGTACCGTACATGCTCTTCC 60.142 45.833 11.26 0.00 0.00 3.46
87 88 1.755380 AGTACCGTACATGCTCTTCCC 59.245 52.381 11.26 0.00 0.00 3.97
88 89 1.479323 GTACCGTACATGCTCTTCCCA 59.521 52.381 3.69 0.00 0.00 4.37
89 90 0.537188 ACCGTACATGCTCTTCCCAG 59.463 55.000 0.00 0.00 0.00 4.45
90 91 0.537188 CCGTACATGCTCTTCCCAGT 59.463 55.000 0.00 0.00 0.00 4.00
91 92 1.066143 CCGTACATGCTCTTCCCAGTT 60.066 52.381 0.00 0.00 0.00 3.16
92 93 2.271800 CGTACATGCTCTTCCCAGTTC 58.728 52.381 0.00 0.00 0.00 3.01
93 94 2.093973 CGTACATGCTCTTCCCAGTTCT 60.094 50.000 0.00 0.00 0.00 3.01
94 95 3.130516 CGTACATGCTCTTCCCAGTTCTA 59.869 47.826 0.00 0.00 0.00 2.10
95 96 3.618690 ACATGCTCTTCCCAGTTCTAC 57.381 47.619 0.00 0.00 0.00 2.59
96 97 3.177228 ACATGCTCTTCCCAGTTCTACT 58.823 45.455 0.00 0.00 0.00 2.57
97 98 3.055530 ACATGCTCTTCCCAGTTCTACTG 60.056 47.826 0.00 0.00 45.53 2.74
112 113 7.878547 AGTTCTACTGACCTATACTGGTTAC 57.121 40.000 0.00 0.00 41.00 2.50
113 114 7.641249 AGTTCTACTGACCTATACTGGTTACT 58.359 38.462 0.00 0.00 41.00 2.24
114 115 7.556996 AGTTCTACTGACCTATACTGGTTACTG 59.443 40.741 0.00 0.00 41.00 2.74
115 116 6.363065 TCTACTGACCTATACTGGTTACTGG 58.637 44.000 0.00 0.00 41.00 4.00
122 123 5.661759 ACCTATACTGGTTACTGGGAAGAAG 59.338 44.000 0.00 0.00 36.89 2.85
143 144 0.733909 GGCAAGCCAGCAATTCGTTC 60.734 55.000 6.14 0.00 35.83 3.95
315 321 7.601705 TCTATCAATGACCTGATGATGTACA 57.398 36.000 0.00 0.00 36.69 2.90
317 323 6.932356 ATCAATGACCTGATGATGTACAAC 57.068 37.500 0.00 0.00 34.69 3.32
318 324 6.053632 TCAATGACCTGATGATGTACAACT 57.946 37.500 0.00 0.00 0.00 3.16
454 476 2.096713 CCGATTCGATCCGATCAAAAGC 60.097 50.000 7.83 4.38 35.23 3.51
465 490 2.699954 GATCAAAAGCGGGAGTGAAGA 58.300 47.619 0.00 0.00 0.00 2.87
468 493 2.104111 TCAAAAGCGGGAGTGAAGAGAA 59.896 45.455 0.00 0.00 0.00 2.87
481 506 3.442273 GTGAAGAGAAGAGAGGTCGATGT 59.558 47.826 0.00 0.00 0.00 3.06
483 508 2.285083 AGAGAAGAGAGGTCGATGTCG 58.715 52.381 0.00 0.00 41.45 4.35
486 511 0.811915 AAGAGAGGTCGATGTCGTGG 59.188 55.000 2.04 0.00 40.80 4.94
593 628 3.227276 CGGTCGGATCCCTCTGGG 61.227 72.222 6.06 0.00 46.11 4.45
636 671 1.421485 CATCTTTCCACGAGCGTGC 59.579 57.895 16.88 0.00 44.16 5.34
637 672 1.005037 ATCTTTCCACGAGCGTGCA 60.005 52.632 16.88 0.00 44.16 4.57
638 673 1.291877 ATCTTTCCACGAGCGTGCAC 61.292 55.000 16.88 6.82 44.16 4.57
639 674 1.956170 CTTTCCACGAGCGTGCACT 60.956 57.895 16.19 0.00 44.16 4.40
640 675 1.498865 CTTTCCACGAGCGTGCACTT 61.499 55.000 16.19 2.44 44.16 3.16
641 676 1.771073 TTTCCACGAGCGTGCACTTG 61.771 55.000 16.19 3.38 44.16 3.16
642 677 4.374702 CCACGAGCGTGCACTTGC 62.375 66.667 16.19 12.04 44.16 4.01
643 678 4.707840 CACGAGCGTGCACTTGCG 62.708 66.667 16.19 16.56 45.83 4.85
787 830 3.168292 TCAAATCTCACCTCAGCTCAGA 58.832 45.455 0.00 0.00 0.00 3.27
789 832 4.958581 TCAAATCTCACCTCAGCTCAGATA 59.041 41.667 0.00 0.00 0.00 1.98
795 838 2.964464 CACCTCAGCTCAGATATGACCT 59.036 50.000 0.00 0.00 0.00 3.85
804 847 3.805207 TCAGATATGACCTTCGTCGAGA 58.195 45.455 0.00 0.00 42.37 4.04
808 851 1.384525 ATGACCTTCGTCGAGAGAGG 58.615 55.000 9.46 9.46 46.73 3.69
818 861 2.531206 GTCGAGAGAGGATTTCAACGG 58.469 52.381 0.00 0.00 43.49 4.44
819 862 1.135083 TCGAGAGAGGATTTCAACGGC 60.135 52.381 0.00 0.00 34.84 5.68
820 863 1.404181 CGAGAGAGGATTTCAACGGCA 60.404 52.381 0.00 0.00 0.00 5.69
821 864 2.003301 GAGAGAGGATTTCAACGGCAC 58.997 52.381 0.00 0.00 0.00 5.01
822 865 1.347707 AGAGAGGATTTCAACGGCACA 59.652 47.619 0.00 0.00 0.00 4.57
823 866 1.464997 GAGAGGATTTCAACGGCACAC 59.535 52.381 0.00 0.00 0.00 3.82
834 877 3.886694 GGCACACGCACAGCACAA 61.887 61.111 0.00 0.00 41.24 3.33
835 878 2.651863 GCACACGCACAGCACAAC 60.652 61.111 0.00 0.00 38.36 3.32
926 970 1.526887 CATAAATACCAGCTCCACGCG 59.473 52.381 3.53 3.53 45.59 6.01
955 999 1.401931 CCAGACTTTCCATTGCTTGCG 60.402 52.381 0.00 0.00 0.00 4.85
986 1031 2.993264 AACCATCCGTCGTCCCGT 60.993 61.111 0.00 0.00 0.00 5.28
988 1033 4.203076 CCATCCGTCGTCCCGTCC 62.203 72.222 0.00 0.00 0.00 4.79
1035 1080 0.240411 GCAAGAAGCAGCAGGACAAG 59.760 55.000 0.00 0.00 44.79 3.16
1036 1081 0.240411 CAAGAAGCAGCAGGACAAGC 59.760 55.000 0.00 0.00 0.00 4.01
1037 1082 0.892814 AAGAAGCAGCAGGACAAGCC 60.893 55.000 0.00 0.00 0.00 4.35
1038 1083 1.601759 GAAGCAGCAGGACAAGCCA 60.602 57.895 0.00 0.00 40.02 4.75
1039 1084 1.860484 GAAGCAGCAGGACAAGCCAC 61.860 60.000 0.00 0.00 40.02 5.01
1040 1085 3.368571 GCAGCAGGACAAGCCACC 61.369 66.667 0.00 0.00 40.02 4.61
1095 1140 2.118294 ACCAAGCCCAAGAAGCCC 59.882 61.111 0.00 0.00 0.00 5.19
1911 1956 1.002251 GCCGAGATCGACGAGAATTCT 60.002 52.381 7.95 7.95 43.02 2.40
1965 2010 3.117284 AGCCCCAGAAGGTAAGAAACAAA 60.117 43.478 0.00 0.00 0.00 2.83
2048 2093 4.631377 CCGCTCACAATCTTCAAACTGATA 59.369 41.667 0.00 0.00 0.00 2.15
2049 2094 5.295292 CCGCTCACAATCTTCAAACTGATAT 59.705 40.000 0.00 0.00 0.00 1.63
2071 2116 1.594862 CAGAAATCGACGGAGATTGCC 59.405 52.381 8.11 4.72 40.39 4.52
2151 2196 3.917760 GGCGGAGGAGACCATCGG 61.918 72.222 0.00 0.00 0.00 4.18
2434 2479 2.182030 GCCGACCTCAACTCCTCG 59.818 66.667 0.00 0.00 0.00 4.63
2554 2599 4.712425 AGGTACGTGTCGGTGCGC 62.712 66.667 0.00 0.00 0.00 6.09
3039 3084 2.677836 GTTTGGCGATGCAGTTCAGATA 59.322 45.455 0.00 0.00 0.00 1.98
3075 3126 6.049149 ACGTTATCAATGTGGACCTCATTAG 58.951 40.000 18.88 13.90 34.34 1.73
3076 3127 6.127168 ACGTTATCAATGTGGACCTCATTAGA 60.127 38.462 18.88 17.55 34.34 2.10
3077 3128 6.422100 CGTTATCAATGTGGACCTCATTAGAG 59.578 42.308 18.88 9.35 41.72 2.43
3078 3129 5.965033 ATCAATGTGGACCTCATTAGAGT 57.035 39.130 18.88 5.59 40.40 3.24
3079 3130 8.421784 GTTATCAATGTGGACCTCATTAGAGTA 58.578 37.037 18.88 8.81 40.40 2.59
3083 3134 8.988060 TCAATGTGGACCTCATTAGAGTATTTA 58.012 33.333 18.88 0.00 40.40 1.40
3112 3163 4.592485 ACTTGTATCCTCTATTCAGGCG 57.408 45.455 0.00 0.00 32.91 5.52
3114 3165 5.138276 ACTTGTATCCTCTATTCAGGCGTA 58.862 41.667 0.00 0.00 32.91 4.42
3115 3166 5.241949 ACTTGTATCCTCTATTCAGGCGTAG 59.758 44.000 0.00 0.00 32.91 3.51
3116 3167 4.981812 TGTATCCTCTATTCAGGCGTAGA 58.018 43.478 0.00 0.00 32.91 2.59
3117 3168 4.760715 TGTATCCTCTATTCAGGCGTAGAC 59.239 45.833 0.00 0.00 32.91 2.59
3118 3169 2.584236 TCCTCTATTCAGGCGTAGACC 58.416 52.381 0.00 0.00 31.70 3.85
3145 3252 4.502087 GGAAGGTTTCTGATGCTTTGCTTT 60.502 41.667 0.00 0.00 0.00 3.51
3147 3254 2.982470 GGTTTCTGATGCTTTGCTTTCG 59.018 45.455 0.00 0.00 0.00 3.46
3148 3255 3.550842 GGTTTCTGATGCTTTGCTTTCGT 60.551 43.478 0.00 0.00 0.00 3.85
3150 3257 3.542712 TCTGATGCTTTGCTTTCGTTC 57.457 42.857 0.00 0.00 0.00 3.95
3151 3258 2.226437 TCTGATGCTTTGCTTTCGTTCC 59.774 45.455 0.00 0.00 0.00 3.62
3152 3259 1.269448 TGATGCTTTGCTTTCGTTCCC 59.731 47.619 0.00 0.00 0.00 3.97
3153 3260 1.269448 GATGCTTTGCTTTCGTTCCCA 59.731 47.619 0.00 0.00 0.00 4.37
3154 3261 1.327303 TGCTTTGCTTTCGTTCCCAT 58.673 45.000 0.00 0.00 0.00 4.00
3155 3262 1.686052 TGCTTTGCTTTCGTTCCCATT 59.314 42.857 0.00 0.00 0.00 3.16
3210 3343 2.632996 AGTTAGTGTACCAGCAGAAGCA 59.367 45.455 0.00 0.00 45.49 3.91
3214 3347 2.005451 GTGTACCAGCAGAAGCATCAG 58.995 52.381 0.00 0.00 45.49 2.90
3237 3370 7.329471 TCAGAAGATCGTCATTTTTACAGACTG 59.671 37.037 11.35 0.00 0.00 3.51
3240 3373 4.725556 TCGTCATTTTTACAGACTGTGC 57.274 40.909 18.58 0.00 0.00 4.57
3241 3374 4.377021 TCGTCATTTTTACAGACTGTGCT 58.623 39.130 18.58 0.00 0.00 4.40
3242 3375 4.211164 TCGTCATTTTTACAGACTGTGCTG 59.789 41.667 18.58 8.06 41.63 4.41
3245 3378 4.580167 TCATTTTTACAGACTGTGCTGCTT 59.420 37.500 18.58 0.00 39.51 3.91
3246 3379 4.552166 TTTTTACAGACTGTGCTGCTTC 57.448 40.909 18.58 0.00 39.51 3.86
3248 3381 2.732412 TACAGACTGTGCTGCTTCTC 57.268 50.000 18.58 0.00 39.51 2.87
3250 3383 1.270199 ACAGACTGTGCTGCTTCTCAG 60.270 52.381 7.47 7.11 45.62 3.35
3251 3384 0.321021 AGACTGTGCTGCTTCTCAGG 59.679 55.000 0.00 0.00 43.06 3.86
3252 3385 0.034616 GACTGTGCTGCTTCTCAGGT 59.965 55.000 0.00 0.00 43.06 4.00
3253 3386 0.471617 ACTGTGCTGCTTCTCAGGTT 59.528 50.000 0.00 0.00 43.06 3.50
3254 3387 1.694150 ACTGTGCTGCTTCTCAGGTTA 59.306 47.619 0.00 0.00 43.06 2.85
3256 3389 2.481952 CTGTGCTGCTTCTCAGGTTAAC 59.518 50.000 0.00 0.00 43.06 2.01
3258 3391 2.224314 GTGCTGCTTCTCAGGTTAACAC 59.776 50.000 8.10 0.00 43.06 3.32
3259 3392 1.461127 GCTGCTTCTCAGGTTAACACG 59.539 52.381 8.10 0.00 43.06 4.49
3260 3393 2.069273 CTGCTTCTCAGGTTAACACGG 58.931 52.381 8.10 0.00 39.15 4.94
3261 3394 1.414919 TGCTTCTCAGGTTAACACGGT 59.585 47.619 8.10 0.00 0.00 4.83
3262 3395 1.798813 GCTTCTCAGGTTAACACGGTG 59.201 52.381 8.10 6.58 0.00 4.94
3263 3396 1.798813 CTTCTCAGGTTAACACGGTGC 59.201 52.381 8.30 0.00 0.00 5.01
3264 3397 0.034337 TCTCAGGTTAACACGGTGCC 59.966 55.000 8.30 0.95 0.00 5.01
3265 3398 0.034896 CTCAGGTTAACACGGTGCCT 59.965 55.000 8.30 3.54 0.00 4.75
3267 3400 1.134037 TCAGGTTAACACGGTGCCTTT 60.134 47.619 8.30 0.00 0.00 3.11
3268 3401 1.001815 CAGGTTAACACGGTGCCTTTG 60.002 52.381 8.30 0.00 0.00 2.77
3269 3402 1.134037 AGGTTAACACGGTGCCTTTGA 60.134 47.619 8.30 0.00 0.00 2.69
3270 3403 1.265905 GGTTAACACGGTGCCTTTGAG 59.734 52.381 8.30 0.00 0.00 3.02
3272 3405 3.132925 GTTAACACGGTGCCTTTGAGTA 58.867 45.455 8.30 0.00 0.00 2.59
3273 3406 2.335316 AACACGGTGCCTTTGAGTAA 57.665 45.000 8.30 0.00 0.00 2.24
3274 3407 2.335316 ACACGGTGCCTTTGAGTAAA 57.665 45.000 8.30 0.00 0.00 2.01
3277 3410 2.552315 CACGGTGCCTTTGAGTAAACAT 59.448 45.455 0.00 0.00 0.00 2.71
3278 3411 3.004315 CACGGTGCCTTTGAGTAAACATT 59.996 43.478 0.00 0.00 0.00 2.71
3299 3586 8.732746 ACATTCTACAAAAAGTTCTACACACT 57.267 30.769 0.00 0.00 0.00 3.55
3350 3643 3.189287 CAGTGAACCCATCTGTAACTTGC 59.811 47.826 0.00 0.00 0.00 4.01
3413 3722 5.967674 GGTGCAATCGAATAAAGAATGACAG 59.032 40.000 0.00 0.00 0.00 3.51
3414 3723 6.403636 GGTGCAATCGAATAAAGAATGACAGT 60.404 38.462 0.00 0.00 0.00 3.55
3415 3724 7.023575 GTGCAATCGAATAAAGAATGACAGTT 58.976 34.615 0.00 0.00 0.00 3.16
3416 3725 7.217070 GTGCAATCGAATAAAGAATGACAGTTC 59.783 37.037 0.00 0.00 0.00 3.01
3418 3727 7.427606 GCAATCGAATAAAGAATGACAGTTCAG 59.572 37.037 0.00 0.00 34.35 3.02
3421 3730 8.189709 TCGAATAAAGAATGACAGTTCAGATG 57.810 34.615 0.00 0.00 34.35 2.90
3430 3739 9.979578 AGAATGACAGTTCAGATGATATCTTAC 57.020 33.333 3.98 0.00 37.58 2.34
3434 3743 9.591792 TGACAGTTCAGATGATATCTTACAAAG 57.408 33.333 3.98 0.00 37.58 2.77
3454 3763 7.826690 ACAAAGTACCATGGATAATTTGTCAC 58.173 34.615 27.95 11.06 43.55 3.67
3456 3765 6.073447 AGTACCATGGATAATTTGTCACCA 57.927 37.500 21.47 0.00 35.09 4.17
3457 3766 6.489603 AGTACCATGGATAATTTGTCACCAA 58.510 36.000 21.47 0.00 34.28 3.67
3560 3870 8.755696 TTTGCATCTGTATTACATGGTTTTTC 57.244 30.769 0.00 0.00 0.00 2.29
3593 3903 5.766150 AATATAGCATTAAAACCTGCGCA 57.234 34.783 10.98 10.98 43.17 6.09
3598 3908 4.064388 AGCATTAAAACCTGCGCATTTTT 58.936 34.783 22.59 23.80 43.17 1.94
3633 3944 1.260544 GAAGGCACAGGCTCCAAAAT 58.739 50.000 0.00 0.00 37.50 1.82
3634 3945 1.203287 GAAGGCACAGGCTCCAAAATC 59.797 52.381 0.00 0.00 37.50 2.17
3635 3946 0.962356 AGGCACAGGCTCCAAAATCG 60.962 55.000 0.00 0.00 40.87 3.34
3637 3948 1.244019 GCACAGGCTCCAAAATCGGT 61.244 55.000 0.00 0.00 36.96 4.69
3638 3949 0.523072 CACAGGCTCCAAAATCGGTG 59.477 55.000 0.00 0.00 0.00 4.94
3640 3951 1.678970 AGGCTCCAAAATCGGTGGC 60.679 57.895 0.00 0.00 43.42 5.01
3643 3954 0.179129 GCTCCAAAATCGGTGGCATG 60.179 55.000 0.00 0.00 35.99 4.06
3644 3955 0.179129 CTCCAAAATCGGTGGCATGC 60.179 55.000 9.90 9.90 35.99 4.06
3645 3956 0.611618 TCCAAAATCGGTGGCATGCT 60.612 50.000 18.92 0.00 35.99 3.79
3646 3957 1.102154 CCAAAATCGGTGGCATGCTA 58.898 50.000 18.92 9.16 0.00 3.49
3647 3958 1.066002 CCAAAATCGGTGGCATGCTAG 59.934 52.381 18.92 6.77 0.00 3.42
3648 3959 2.016318 CAAAATCGGTGGCATGCTAGA 58.984 47.619 18.92 11.98 0.00 2.43
3649 3960 2.418368 AAATCGGTGGCATGCTAGAA 57.582 45.000 18.92 0.00 0.00 2.10
3650 3961 2.418368 AATCGGTGGCATGCTAGAAA 57.582 45.000 18.92 0.00 0.00 2.52
3652 3963 2.192664 TCGGTGGCATGCTAGAAAAA 57.807 45.000 18.92 0.00 0.00 1.94
3653 3964 2.722094 TCGGTGGCATGCTAGAAAAAT 58.278 42.857 18.92 0.00 0.00 1.82
3654 3965 2.423185 TCGGTGGCATGCTAGAAAAATG 59.577 45.455 18.92 0.00 0.00 2.32
3655 3966 2.480073 CGGTGGCATGCTAGAAAAATGG 60.480 50.000 18.92 0.00 0.00 3.16
3656 3967 2.497273 GGTGGCATGCTAGAAAAATGGT 59.503 45.455 18.92 0.00 0.00 3.55
3657 3968 3.699038 GGTGGCATGCTAGAAAAATGGTA 59.301 43.478 18.92 0.00 0.00 3.25
3660 3996 6.438763 GTGGCATGCTAGAAAAATGGTATAC 58.561 40.000 18.92 0.00 0.00 1.47
3662 3998 6.262944 TGGCATGCTAGAAAAATGGTATACAG 59.737 38.462 18.92 0.00 0.00 2.74
3665 4001 8.072567 GCATGCTAGAAAAATGGTATACAGAAG 58.927 37.037 11.37 0.00 0.00 2.85
3676 4012 7.979786 ATGGTATACAGAAGAGGAAGAAGAA 57.020 36.000 5.01 0.00 0.00 2.52
3677 4013 7.171630 TGGTATACAGAAGAGGAAGAAGAAC 57.828 40.000 5.01 0.00 0.00 3.01
3681 4017 4.384940 ACAGAAGAGGAAGAAGAACAAGC 58.615 43.478 0.00 0.00 0.00 4.01
3687 4023 7.721399 AGAAGAGGAAGAAGAACAAGCAAAATA 59.279 33.333 0.00 0.00 0.00 1.40
3688 4024 7.208225 AGAGGAAGAAGAACAAGCAAAATAC 57.792 36.000 0.00 0.00 0.00 1.89
3689 4025 6.002062 AGGAAGAAGAACAAGCAAAATACG 57.998 37.500 0.00 0.00 0.00 3.06
3690 4026 4.617223 GGAAGAAGAACAAGCAAAATACGC 59.383 41.667 0.00 0.00 0.00 4.42
3691 4027 4.829064 AGAAGAACAAGCAAAATACGCA 57.171 36.364 0.00 0.00 0.00 5.24
3692 4028 4.787598 AGAAGAACAAGCAAAATACGCAG 58.212 39.130 0.00 0.00 0.00 5.18
3693 4029 3.559238 AGAACAAGCAAAATACGCAGG 57.441 42.857 0.00 0.00 0.00 4.85
3694 4030 2.884639 AGAACAAGCAAAATACGCAGGT 59.115 40.909 0.00 0.00 0.00 4.00
3695 4031 4.069304 AGAACAAGCAAAATACGCAGGTA 58.931 39.130 0.00 0.00 0.00 3.08
3696 4032 3.824414 ACAAGCAAAATACGCAGGTAC 57.176 42.857 0.00 0.00 0.00 3.34
3704 4040 1.400737 ATACGCAGGTACAGGGACTC 58.599 55.000 8.30 0.00 34.60 3.36
3715 4051 2.360475 GGGACTCAGCAGGTTGGC 60.360 66.667 0.00 0.00 0.00 4.52
3805 4141 2.031012 CACCTCTTGCCGCAGACA 59.969 61.111 0.00 0.00 0.00 3.41
3807 4143 0.957395 CACCTCTTGCCGCAGACAAT 60.957 55.000 0.00 0.00 0.00 2.71
3817 4153 0.179100 CGCAGACAATCATCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
3903 4239 1.404391 CCTGATGATGACCAGCTTTGC 59.596 52.381 0.00 0.00 31.20 3.68
3904 4240 2.089201 CTGATGATGACCAGCTTTGCA 58.911 47.619 0.00 0.00 31.20 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.512342 AAGAAGATGATCCAAAGCTGAAAG 57.488 37.500 0.00 0.00 0.00 2.62
1 2 6.266103 ACAAAGAAGATGATCCAAAGCTGAAA 59.734 34.615 0.00 0.00 0.00 2.69
2 3 5.771666 ACAAAGAAGATGATCCAAAGCTGAA 59.228 36.000 0.00 0.00 0.00 3.02
3 4 5.319453 ACAAAGAAGATGATCCAAAGCTGA 58.681 37.500 0.00 0.00 0.00 4.26
4 5 5.415077 AGACAAAGAAGATGATCCAAAGCTG 59.585 40.000 0.00 0.00 0.00 4.24
5 6 5.568392 AGACAAAGAAGATGATCCAAAGCT 58.432 37.500 0.00 0.00 0.00 3.74
6 7 5.893897 AGACAAAGAAGATGATCCAAAGC 57.106 39.130 0.00 0.00 0.00 3.51
7 8 7.108847 AGGTAGACAAAGAAGATGATCCAAAG 58.891 38.462 0.00 0.00 0.00 2.77
8 9 7.020827 AGGTAGACAAAGAAGATGATCCAAA 57.979 36.000 0.00 0.00 0.00 3.28
9 10 6.627087 AGGTAGACAAAGAAGATGATCCAA 57.373 37.500 0.00 0.00 0.00 3.53
10 11 6.627087 AAGGTAGACAAAGAAGATGATCCA 57.373 37.500 0.00 0.00 0.00 3.41
11 12 6.704050 GCTAAGGTAGACAAAGAAGATGATCC 59.296 42.308 0.00 0.00 0.00 3.36
12 13 6.704050 GGCTAAGGTAGACAAAGAAGATGATC 59.296 42.308 0.00 0.00 32.68 2.92
13 14 6.156949 TGGCTAAGGTAGACAAAGAAGATGAT 59.843 38.462 0.00 0.00 41.86 2.45
14 15 5.483937 TGGCTAAGGTAGACAAAGAAGATGA 59.516 40.000 0.00 0.00 41.86 2.92
15 16 5.734720 TGGCTAAGGTAGACAAAGAAGATG 58.265 41.667 0.00 0.00 41.86 2.90
25 26 3.301274 AGACTCCATGGCTAAGGTAGAC 58.699 50.000 6.96 0.00 27.54 2.59
26 27 3.205507 AGAGACTCCATGGCTAAGGTAGA 59.794 47.826 6.96 0.00 31.30 2.59
27 28 3.320541 CAGAGACTCCATGGCTAAGGTAG 59.679 52.174 6.96 0.00 31.30 3.18
28 29 3.300388 CAGAGACTCCATGGCTAAGGTA 58.700 50.000 6.96 0.00 31.30 3.08
29 30 2.114616 CAGAGACTCCATGGCTAAGGT 58.885 52.381 6.96 0.27 31.30 3.50
30 31 2.102252 GACAGAGACTCCATGGCTAAGG 59.898 54.545 6.96 0.00 31.30 2.69
31 32 3.030291 AGACAGAGACTCCATGGCTAAG 58.970 50.000 6.96 1.50 31.30 2.18
32 33 3.027412 GAGACAGAGACTCCATGGCTAA 58.973 50.000 6.96 0.00 30.62 3.09
33 34 2.024941 TGAGACAGAGACTCCATGGCTA 60.025 50.000 6.96 0.00 30.62 3.93
34 35 1.272928 TGAGACAGAGACTCCATGGCT 60.273 52.381 6.96 0.00 34.11 4.75
35 36 1.136695 CTGAGACAGAGACTCCATGGC 59.863 57.143 6.96 0.00 32.44 4.40
36 37 1.755959 CCTGAGACAGAGACTCCATGG 59.244 57.143 4.97 4.97 32.44 3.66
37 38 1.136695 GCCTGAGACAGAGACTCCATG 59.863 57.143 0.00 0.00 32.44 3.66
38 39 1.272928 TGCCTGAGACAGAGACTCCAT 60.273 52.381 0.00 0.00 32.44 3.41
39 40 0.113190 TGCCTGAGACAGAGACTCCA 59.887 55.000 0.00 0.00 32.44 3.86
40 41 1.484038 ATGCCTGAGACAGAGACTCC 58.516 55.000 0.00 0.00 32.44 3.85
41 42 4.935352 AATATGCCTGAGACAGAGACTC 57.065 45.455 0.00 0.00 32.44 3.36
42 43 4.469227 ACAAATATGCCTGAGACAGAGACT 59.531 41.667 0.00 0.00 32.44 3.24
43 44 4.764172 ACAAATATGCCTGAGACAGAGAC 58.236 43.478 0.00 0.00 32.44 3.36
44 45 5.426689 AACAAATATGCCTGAGACAGAGA 57.573 39.130 0.00 0.00 32.44 3.10
45 46 6.344500 ACTAACAAATATGCCTGAGACAGAG 58.656 40.000 0.00 0.00 32.44 3.35
46 47 6.299805 ACTAACAAATATGCCTGAGACAGA 57.700 37.500 0.00 0.00 32.44 3.41
47 48 6.480320 GGTACTAACAAATATGCCTGAGACAG 59.520 42.308 0.00 0.00 0.00 3.51
48 49 6.346096 GGTACTAACAAATATGCCTGAGACA 58.654 40.000 0.00 0.00 0.00 3.41
49 50 5.462398 CGGTACTAACAAATATGCCTGAGAC 59.538 44.000 0.00 0.00 0.00 3.36
50 51 5.128171 ACGGTACTAACAAATATGCCTGAGA 59.872 40.000 0.00 0.00 0.00 3.27
51 52 5.357257 ACGGTACTAACAAATATGCCTGAG 58.643 41.667 0.00 0.00 0.00 3.35
52 53 5.347620 ACGGTACTAACAAATATGCCTGA 57.652 39.130 0.00 0.00 0.00 3.86
53 54 6.044046 TGTACGGTACTAACAAATATGCCTG 58.956 40.000 18.32 0.00 0.00 4.85
54 55 6.224665 TGTACGGTACTAACAAATATGCCT 57.775 37.500 18.32 0.00 0.00 4.75
55 56 6.565247 GCATGTACGGTACTAACAAATATGCC 60.565 42.308 18.32 5.27 0.00 4.40
56 57 6.202188 AGCATGTACGGTACTAACAAATATGC 59.798 38.462 19.77 19.77 0.00 3.14
57 58 7.652105 AGAGCATGTACGGTACTAACAAATATG 59.348 37.037 18.32 11.77 0.00 1.78
58 59 7.723324 AGAGCATGTACGGTACTAACAAATAT 58.277 34.615 18.32 0.00 0.00 1.28
59 60 7.104043 AGAGCATGTACGGTACTAACAAATA 57.896 36.000 18.32 0.00 0.00 1.40
60 61 5.974108 AGAGCATGTACGGTACTAACAAAT 58.026 37.500 18.32 0.81 0.00 2.32
61 62 5.395682 AGAGCATGTACGGTACTAACAAA 57.604 39.130 18.32 0.00 0.00 2.83
62 63 5.395682 AAGAGCATGTACGGTACTAACAA 57.604 39.130 18.32 0.00 0.00 2.83
63 64 4.142315 GGAAGAGCATGTACGGTACTAACA 60.142 45.833 18.32 1.92 0.00 2.41
64 65 4.357996 GGAAGAGCATGTACGGTACTAAC 58.642 47.826 18.32 8.07 0.00 2.34
65 66 3.382546 GGGAAGAGCATGTACGGTACTAA 59.617 47.826 18.32 0.47 0.00 2.24
66 67 2.954318 GGGAAGAGCATGTACGGTACTA 59.046 50.000 18.32 6.41 0.00 1.82
67 68 1.755380 GGGAAGAGCATGTACGGTACT 59.245 52.381 18.32 0.00 0.00 2.73
68 69 1.479323 TGGGAAGAGCATGTACGGTAC 59.521 52.381 11.33 11.33 0.00 3.34
69 70 1.754803 CTGGGAAGAGCATGTACGGTA 59.245 52.381 0.00 0.00 0.00 4.02
70 71 0.537188 CTGGGAAGAGCATGTACGGT 59.463 55.000 0.00 0.00 0.00 4.83
71 72 0.537188 ACTGGGAAGAGCATGTACGG 59.463 55.000 0.00 0.00 0.00 4.02
72 73 2.093973 AGAACTGGGAAGAGCATGTACG 60.094 50.000 0.00 0.00 0.00 3.67
73 74 3.618690 AGAACTGGGAAGAGCATGTAC 57.381 47.619 0.00 0.00 0.00 2.90
74 75 4.160439 CAGTAGAACTGGGAAGAGCATGTA 59.840 45.833 0.00 0.00 42.35 2.29
75 76 3.055530 CAGTAGAACTGGGAAGAGCATGT 60.056 47.826 0.00 0.00 42.35 3.21
76 77 3.196469 TCAGTAGAACTGGGAAGAGCATG 59.804 47.826 7.18 0.00 45.94 4.06
77 78 3.196685 GTCAGTAGAACTGGGAAGAGCAT 59.803 47.826 7.18 0.00 45.94 3.79
78 79 2.563179 GTCAGTAGAACTGGGAAGAGCA 59.437 50.000 7.18 0.00 45.94 4.26
79 80 2.093921 GGTCAGTAGAACTGGGAAGAGC 60.094 54.545 7.18 0.00 45.94 4.09
80 81 3.436243 AGGTCAGTAGAACTGGGAAGAG 58.564 50.000 7.18 0.00 45.94 2.85
81 82 3.544698 AGGTCAGTAGAACTGGGAAGA 57.455 47.619 7.18 0.00 45.94 2.87
82 83 6.039941 CAGTATAGGTCAGTAGAACTGGGAAG 59.960 46.154 7.18 0.00 45.94 3.46
83 84 5.892119 CAGTATAGGTCAGTAGAACTGGGAA 59.108 44.000 7.18 0.00 45.94 3.97
84 85 5.446860 CAGTATAGGTCAGTAGAACTGGGA 58.553 45.833 7.18 0.00 45.94 4.37
85 86 4.585162 CCAGTATAGGTCAGTAGAACTGGG 59.415 50.000 10.12 0.00 45.94 4.45
86 87 5.776173 CCAGTATAGGTCAGTAGAACTGG 57.224 47.826 7.18 4.37 45.94 4.00
88 89 7.556996 CAGTAACCAGTATAGGTCAGTAGAACT 59.443 40.741 0.00 0.00 45.74 3.01
89 90 7.201803 CCAGTAACCAGTATAGGTCAGTAGAAC 60.202 44.444 0.00 0.00 42.25 3.01
90 91 6.832384 CCAGTAACCAGTATAGGTCAGTAGAA 59.168 42.308 0.00 0.00 42.25 2.10
91 92 6.363065 CCAGTAACCAGTATAGGTCAGTAGA 58.637 44.000 0.00 0.00 42.25 2.59
92 93 5.535406 CCCAGTAACCAGTATAGGTCAGTAG 59.465 48.000 0.00 0.00 42.25 2.57
93 94 5.194334 TCCCAGTAACCAGTATAGGTCAGTA 59.806 44.000 0.00 0.00 42.25 2.74
94 95 4.016851 TCCCAGTAACCAGTATAGGTCAGT 60.017 45.833 0.00 0.00 42.25 3.41
95 96 4.543689 TCCCAGTAACCAGTATAGGTCAG 58.456 47.826 0.00 0.00 42.25 3.51
96 97 4.613265 TCCCAGTAACCAGTATAGGTCA 57.387 45.455 0.00 0.00 42.25 4.02
97 98 5.206587 TCTTCCCAGTAACCAGTATAGGTC 58.793 45.833 0.00 0.00 42.25 3.85
98 99 5.216665 TCTTCCCAGTAACCAGTATAGGT 57.783 43.478 0.00 0.00 45.91 3.08
99 100 5.453480 GCTTCTTCCCAGTAACCAGTATAGG 60.453 48.000 0.00 0.00 0.00 2.57
100 101 5.602628 GCTTCTTCCCAGTAACCAGTATAG 58.397 45.833 0.00 0.00 0.00 1.31
101 102 4.098960 CGCTTCTTCCCAGTAACCAGTATA 59.901 45.833 0.00 0.00 0.00 1.47
102 103 3.118738 CGCTTCTTCCCAGTAACCAGTAT 60.119 47.826 0.00 0.00 0.00 2.12
103 104 2.232941 CGCTTCTTCCCAGTAACCAGTA 59.767 50.000 0.00 0.00 0.00 2.74
104 105 1.002087 CGCTTCTTCCCAGTAACCAGT 59.998 52.381 0.00 0.00 0.00 4.00
105 106 1.676014 CCGCTTCTTCCCAGTAACCAG 60.676 57.143 0.00 0.00 0.00 4.00
106 107 0.323629 CCGCTTCTTCCCAGTAACCA 59.676 55.000 0.00 0.00 0.00 3.67
107 108 1.025113 GCCGCTTCTTCCCAGTAACC 61.025 60.000 0.00 0.00 0.00 2.85
108 109 0.321298 TGCCGCTTCTTCCCAGTAAC 60.321 55.000 0.00 0.00 0.00 2.50
109 110 0.398696 TTGCCGCTTCTTCCCAGTAA 59.601 50.000 0.00 0.00 0.00 2.24
110 111 0.036388 CTTGCCGCTTCTTCCCAGTA 60.036 55.000 0.00 0.00 0.00 2.74
111 112 1.302832 CTTGCCGCTTCTTCCCAGT 60.303 57.895 0.00 0.00 0.00 4.00
112 113 2.694760 GCTTGCCGCTTCTTCCCAG 61.695 63.158 0.00 0.00 35.14 4.45
113 114 2.672996 GCTTGCCGCTTCTTCCCA 60.673 61.111 0.00 0.00 35.14 4.37
114 115 3.443925 GGCTTGCCGCTTCTTCCC 61.444 66.667 0.00 0.00 39.13 3.97
115 116 2.672996 TGGCTTGCCGCTTCTTCC 60.673 61.111 7.18 0.00 39.13 3.46
122 123 2.507769 GAATTGCTGGCTTGCCGC 60.508 61.111 17.01 17.01 38.13 6.53
143 144 2.597305 GCAGTGAATGGTAGTACGTTCG 59.403 50.000 0.00 0.00 38.83 3.95
191 197 2.187100 CCCAGGTGGCAATTATGGTTT 58.813 47.619 0.00 0.00 0.00 3.27
275 281 5.213891 TGATAGATTTCGCTGATGCCTTA 57.786 39.130 0.00 0.00 35.36 2.69
315 321 1.093159 CGTGAGCCCTCGTACTAGTT 58.907 55.000 0.00 0.00 0.00 2.24
317 323 0.377554 CACGTGAGCCCTCGTACTAG 59.622 60.000 10.90 0.00 40.05 2.57
318 324 1.651240 GCACGTGAGCCCTCGTACTA 61.651 60.000 22.23 0.00 40.05 1.82
389 411 4.463879 CGCACCAGAGCCAGGGAG 62.464 72.222 0.00 0.00 0.00 4.30
454 476 1.748493 CCTCTCTTCTCTTCACTCCCG 59.252 57.143 0.00 0.00 0.00 5.14
457 479 3.340034 TCGACCTCTCTTCTCTTCACTC 58.660 50.000 0.00 0.00 0.00 3.51
460 482 3.691575 ACATCGACCTCTCTTCTCTTCA 58.308 45.455 0.00 0.00 0.00 3.02
461 483 3.242608 CGACATCGACCTCTCTTCTCTTC 60.243 52.174 0.00 0.00 43.02 2.87
465 490 1.740585 CACGACATCGACCTCTCTTCT 59.259 52.381 8.54 0.00 43.02 2.85
468 493 1.032657 CCCACGACATCGACCTCTCT 61.033 60.000 8.54 0.00 43.02 3.10
483 508 4.107051 GCTCGTGTGCATGCCCAC 62.107 66.667 21.71 21.71 36.28 4.61
486 511 3.503363 GGAGCTCGTGTGCATGCC 61.503 66.667 16.68 7.25 34.99 4.40
587 621 4.899239 GCCGTCATCCGCCCAGAG 62.899 72.222 0.00 0.00 34.38 3.35
636 671 3.188786 GCTACGAGGGCGCAAGTG 61.189 66.667 10.83 0.00 42.48 3.16
637 672 4.452733 GGCTACGAGGGCGCAAGT 62.453 66.667 10.83 5.58 42.48 3.16
643 678 2.202756 CTCAACGGCTACGAGGGC 60.203 66.667 0.00 0.00 44.60 5.19
685 722 3.409570 CGATTGGCTCATCATCTGGAAT 58.590 45.455 0.00 0.00 0.00 3.01
689 726 2.414806 CTCCGATTGGCTCATCATCTG 58.585 52.381 0.00 0.00 34.14 2.90
751 791 2.859165 TTTGAAATCCTCTCAGCGGT 57.141 45.000 0.00 0.00 0.00 5.68
752 792 3.539604 AGATTTGAAATCCTCTCAGCGG 58.460 45.455 13.88 0.00 0.00 5.52
755 795 5.743117 AGGTGAGATTTGAAATCCTCTCAG 58.257 41.667 13.88 0.00 43.40 3.35
756 796 5.249163 TGAGGTGAGATTTGAAATCCTCTCA 59.751 40.000 18.46 18.04 41.25 3.27
787 830 3.142951 CCTCTCTCGACGAAGGTCATAT 58.857 50.000 5.99 0.00 43.61 1.78
789 832 1.065345 TCCTCTCTCGACGAAGGTCAT 60.065 52.381 12.60 0.00 43.61 3.06
795 838 3.669824 CGTTGAAATCCTCTCTCGACGAA 60.670 47.826 0.00 0.00 45.66 3.85
804 847 1.523758 GTGTGCCGTTGAAATCCTCT 58.476 50.000 0.00 0.00 0.00 3.69
808 851 0.996727 GTGCGTGTGCCGTTGAAATC 60.997 55.000 0.00 0.00 41.78 2.17
809 852 1.008995 GTGCGTGTGCCGTTGAAAT 60.009 52.632 0.00 0.00 41.78 2.17
810 853 2.316361 CTGTGCGTGTGCCGTTGAAA 62.316 55.000 0.00 0.00 41.78 2.69
811 854 2.818487 CTGTGCGTGTGCCGTTGAA 61.818 57.895 0.00 0.00 41.78 2.69
812 855 3.268603 CTGTGCGTGTGCCGTTGA 61.269 61.111 0.00 0.00 41.78 3.18
817 860 3.886694 TTGTGCTGTGCGTGTGCC 61.887 61.111 0.00 0.00 41.78 5.01
818 861 2.651863 GTTGTGCTGTGCGTGTGC 60.652 61.111 0.00 0.00 43.20 4.57
819 862 1.757346 TACGTTGTGCTGTGCGTGTG 61.757 55.000 0.00 0.00 38.10 3.82
820 863 1.519676 TACGTTGTGCTGTGCGTGT 60.520 52.632 0.00 0.00 38.10 4.49
821 864 1.083657 GTACGTTGTGCTGTGCGTG 60.084 57.895 0.00 0.00 38.10 5.34
822 865 0.031043 TAGTACGTTGTGCTGTGCGT 59.969 50.000 0.00 0.00 40.76 5.24
823 866 1.133407 TTAGTACGTTGTGCTGTGCG 58.867 50.000 0.00 0.00 30.04 5.34
824 867 1.862201 TGTTAGTACGTTGTGCTGTGC 59.138 47.619 0.00 0.00 30.04 4.57
825 868 2.097589 CGTGTTAGTACGTTGTGCTGTG 60.098 50.000 0.00 0.00 39.13 3.66
826 869 2.121786 CGTGTTAGTACGTTGTGCTGT 58.878 47.619 0.00 0.00 39.13 4.40
827 870 2.387185 TCGTGTTAGTACGTTGTGCTG 58.613 47.619 0.00 0.00 44.06 4.41
828 871 2.780065 TCGTGTTAGTACGTTGTGCT 57.220 45.000 0.00 0.00 44.06 4.40
829 872 2.409371 GCTTCGTGTTAGTACGTTGTGC 60.409 50.000 0.00 0.00 44.06 4.57
830 873 2.790448 TGCTTCGTGTTAGTACGTTGTG 59.210 45.455 0.00 0.00 44.06 3.33
831 874 2.791004 GTGCTTCGTGTTAGTACGTTGT 59.209 45.455 0.00 0.00 44.06 3.32
832 875 2.154389 GGTGCTTCGTGTTAGTACGTTG 59.846 50.000 0.00 0.00 44.06 4.10
833 876 2.223782 TGGTGCTTCGTGTTAGTACGTT 60.224 45.455 0.00 0.00 44.06 3.99
834 877 1.337703 TGGTGCTTCGTGTTAGTACGT 59.662 47.619 0.00 0.00 44.06 3.57
835 878 1.717645 GTGGTGCTTCGTGTTAGTACG 59.282 52.381 0.00 0.00 44.98 3.67
926 970 1.133606 TGGAAAGTCTGGGGTTGGAAC 60.134 52.381 0.00 0.00 0.00 3.62
986 1031 2.659063 CCCATGGCGACTCACTGGA 61.659 63.158 6.09 0.00 0.00 3.86
988 1033 2.124983 CCCCATGGCGACTCACTG 60.125 66.667 6.09 0.00 0.00 3.66
1125 1170 4.388499 TTGGCCTTCTCGTCGCCC 62.388 66.667 3.32 0.00 42.29 6.13
1209 1254 1.028330 TAGCCTTGACGACGATCGGT 61.028 55.000 20.98 8.52 45.59 4.69
1221 1266 2.700773 GGCCGCCTTGTTAGCCTTG 61.701 63.158 0.71 0.00 42.34 3.61
1252 1297 0.684805 TCCTCCTTCTTCTCCTCCGC 60.685 60.000 0.00 0.00 0.00 5.54
1253 1298 1.398692 CTCCTCCTTCTTCTCCTCCG 58.601 60.000 0.00 0.00 0.00 4.63
1254 1299 1.119684 GCTCCTCCTTCTTCTCCTCC 58.880 60.000 0.00 0.00 0.00 4.30
1668 1713 0.179108 GAACGGAGACCATCTTCCCG 60.179 60.000 0.00 0.00 45.09 5.14
1734 1779 2.811317 GGAGACGCGCACCTCTTG 60.811 66.667 20.70 0.72 0.00 3.02
1782 1827 1.683938 CCTCCAGCATTCTCATTGGCA 60.684 52.381 0.00 0.00 0.00 4.92
1911 1956 2.076100 CTGCTGTTGTTATTGCGGAGA 58.924 47.619 0.00 0.00 34.02 3.71
1965 2010 3.978855 GGCGTTAAAATTCGAACTTTGCT 59.021 39.130 14.42 0.00 0.00 3.91
2048 2093 3.557595 GCAATCTCCGTCGATTTCTGAAT 59.442 43.478 0.00 0.00 31.52 2.57
2049 2094 2.930040 GCAATCTCCGTCGATTTCTGAA 59.070 45.455 0.00 0.00 31.52 3.02
3039 3084 7.224753 CCACATTGATAACGTTAGCAAGACTAT 59.775 37.037 33.88 20.09 41.62 2.12
3075 3126 7.988028 AGGATACAAGTTTGCTCCTAAATACTC 59.012 37.037 12.42 0.00 40.09 2.59
3076 3127 7.862675 AGGATACAAGTTTGCTCCTAAATACT 58.137 34.615 12.42 0.00 40.09 2.12
3077 3128 7.988028 AGAGGATACAAGTTTGCTCCTAAATAC 59.012 37.037 13.51 4.94 41.21 1.89
3078 3129 8.090788 AGAGGATACAAGTTTGCTCCTAAATA 57.909 34.615 13.51 0.00 41.21 1.40
3079 3130 6.963322 AGAGGATACAAGTTTGCTCCTAAAT 58.037 36.000 13.51 4.47 41.21 1.40
3083 3134 6.156949 TGAATAGAGGATACAAGTTTGCTCCT 59.843 38.462 13.44 13.44 42.79 3.69
3118 3169 2.787994 AGCATCAGAAACCTTCCACAG 58.212 47.619 0.00 0.00 0.00 3.66
3120 3171 3.858503 GCAAAGCATCAGAAACCTTCCAC 60.859 47.826 0.00 0.00 0.00 4.02
3145 3252 0.665835 GTGTTGCACAATGGGAACGA 59.334 50.000 0.00 0.00 41.40 3.85
3155 3262 2.616634 ATGCCAAATTGTGTTGCACA 57.383 40.000 0.00 0.00 43.02 4.57
3165 3298 3.892284 TGGGACACGTATATGCCAAATT 58.108 40.909 4.66 0.00 0.00 1.82
3210 3343 8.037758 AGTCTGTAAAAATGACGATCTTCTGAT 58.962 33.333 0.48 0.00 36.01 2.90
3214 3347 7.230222 CACAGTCTGTAAAAATGACGATCTTC 58.770 38.462 4.85 0.00 36.01 2.87
3237 3370 2.224314 GTGTTAACCTGAGAAGCAGCAC 59.776 50.000 2.48 0.00 43.50 4.40
3240 3373 2.069273 CCGTGTTAACCTGAGAAGCAG 58.931 52.381 2.48 0.00 44.49 4.24
3241 3374 1.414919 ACCGTGTTAACCTGAGAAGCA 59.585 47.619 2.48 0.00 0.00 3.91
3242 3375 1.798813 CACCGTGTTAACCTGAGAAGC 59.201 52.381 2.48 0.00 0.00 3.86
3245 3378 0.034337 GGCACCGTGTTAACCTGAGA 59.966 55.000 2.48 0.00 0.00 3.27
3246 3379 0.034896 AGGCACCGTGTTAACCTGAG 59.965 55.000 2.48 0.00 0.00 3.35
3248 3381 1.001815 CAAAGGCACCGTGTTAACCTG 60.002 52.381 2.48 0.00 0.00 4.00
3250 3383 1.265905 CTCAAAGGCACCGTGTTAACC 59.734 52.381 2.48 0.00 0.00 2.85
3251 3384 1.944709 ACTCAAAGGCACCGTGTTAAC 59.055 47.619 0.00 0.00 0.00 2.01
3252 3385 2.335316 ACTCAAAGGCACCGTGTTAA 57.665 45.000 0.00 0.00 0.00 2.01
3253 3386 3.472283 TTACTCAAAGGCACCGTGTTA 57.528 42.857 0.00 0.00 0.00 2.41
3254 3387 2.335316 TTACTCAAAGGCACCGTGTT 57.665 45.000 0.00 0.00 0.00 3.32
3256 3389 1.944024 TGTTTACTCAAAGGCACCGTG 59.056 47.619 0.00 0.00 0.00 4.94
3258 3391 3.502211 AGAATGTTTACTCAAAGGCACCG 59.498 43.478 0.00 0.00 0.00 4.94
3259 3392 5.472137 TGTAGAATGTTTACTCAAAGGCACC 59.528 40.000 0.00 0.00 0.00 5.01
3260 3393 6.554334 TGTAGAATGTTTACTCAAAGGCAC 57.446 37.500 0.00 0.00 0.00 5.01
3261 3394 7.575414 TTTGTAGAATGTTTACTCAAAGGCA 57.425 32.000 0.00 0.00 0.00 4.75
3262 3395 8.865590 TTTTTGTAGAATGTTTACTCAAAGGC 57.134 30.769 0.00 0.00 0.00 4.35
3272 3405 9.783256 GTGTGTAGAACTTTTTGTAGAATGTTT 57.217 29.630 0.00 0.00 30.06 2.83
3273 3406 9.174166 AGTGTGTAGAACTTTTTGTAGAATGTT 57.826 29.630 0.00 0.00 31.85 2.71
3274 3407 8.732746 AGTGTGTAGAACTTTTTGTAGAATGT 57.267 30.769 0.00 0.00 0.00 2.71
3277 3410 9.880157 AACTAGTGTGTAGAACTTTTTGTAGAA 57.120 29.630 0.00 0.00 0.00 2.10
3278 3411 9.525409 GAACTAGTGTGTAGAACTTTTTGTAGA 57.475 33.333 0.00 0.00 0.00 2.59
3291 3578 5.238432 TGCCACAAAATGAACTAGTGTGTAG 59.762 40.000 0.00 0.00 38.30 2.74
3299 3586 5.070001 AGCTAACTGCCACAAAATGAACTA 58.930 37.500 0.00 0.00 44.23 2.24
3350 3643 2.540265 AAGCTCCTCTTGTGAGTGTG 57.460 50.000 0.00 0.00 38.61 3.82
3405 3714 9.755804 TGTAAGATATCATCTGAACTGTCATTC 57.244 33.333 5.32 0.00 40.13 2.67
3413 3722 9.817809 TGGTACTTTGTAAGATATCATCTGAAC 57.182 33.333 5.32 0.00 40.13 3.18
3415 3724 9.987272 CATGGTACTTTGTAAGATATCATCTGA 57.013 33.333 5.32 0.00 40.13 3.27
3416 3725 9.212641 CCATGGTACTTTGTAAGATATCATCTG 57.787 37.037 2.57 0.00 40.13 2.90
3418 3727 9.950496 ATCCATGGTACTTTGTAAGATATCATC 57.050 33.333 12.58 0.00 0.00 2.92
3430 3739 7.093988 TGGTGACAAATTATCCATGGTACTTTG 60.094 37.037 21.75 21.75 37.44 2.77
3433 3742 6.073447 TGGTGACAAATTATCCATGGTACT 57.927 37.500 12.58 0.38 37.44 2.73
3600 3910 1.314730 GCCTTCCGGACAACTCAAAA 58.685 50.000 1.83 0.00 0.00 2.44
3604 3914 0.951040 CTGTGCCTTCCGGACAACTC 60.951 60.000 1.83 0.00 0.00 3.01
3605 3915 1.071471 CTGTGCCTTCCGGACAACT 59.929 57.895 1.83 0.00 0.00 3.16
3611 3922 4.785453 GGAGCCTGTGCCTTCCGG 62.785 72.222 0.00 0.00 38.69 5.14
3623 3934 1.322538 ATGCCACCGATTTTGGAGCC 61.323 55.000 0.00 0.00 36.02 4.70
3626 3937 0.611618 AGCATGCCACCGATTTTGGA 60.612 50.000 15.66 0.00 36.02 3.53
3633 3944 2.192664 TTTTTCTAGCATGCCACCGA 57.807 45.000 15.66 2.74 0.00 4.69
3634 3945 2.480073 CCATTTTTCTAGCATGCCACCG 60.480 50.000 15.66 0.02 0.00 4.94
3635 3946 2.497273 ACCATTTTTCTAGCATGCCACC 59.503 45.455 15.66 0.00 0.00 4.61
3637 3948 6.125719 TGTATACCATTTTTCTAGCATGCCA 58.874 36.000 15.66 0.00 0.00 4.92
3638 3949 6.486657 TCTGTATACCATTTTTCTAGCATGCC 59.513 38.462 15.66 0.00 0.00 4.40
3640 3951 9.330063 TCTTCTGTATACCATTTTTCTAGCATG 57.670 33.333 0.00 0.00 0.00 4.06
3643 3954 8.204836 TCCTCTTCTGTATACCATTTTTCTAGC 58.795 37.037 0.00 0.00 0.00 3.42
3646 3957 8.826765 TCTTCCTCTTCTGTATACCATTTTTCT 58.173 33.333 0.00 0.00 0.00 2.52
3647 3958 9.449719 TTCTTCCTCTTCTGTATACCATTTTTC 57.550 33.333 0.00 0.00 0.00 2.29
3648 3959 9.454859 CTTCTTCCTCTTCTGTATACCATTTTT 57.545 33.333 0.00 0.00 0.00 1.94
3649 3960 8.826765 TCTTCTTCCTCTTCTGTATACCATTTT 58.173 33.333 0.00 0.00 0.00 1.82
3650 3961 8.380742 TCTTCTTCCTCTTCTGTATACCATTT 57.619 34.615 0.00 0.00 0.00 2.32
3652 3963 7.400339 TGTTCTTCTTCCTCTTCTGTATACCAT 59.600 37.037 0.00 0.00 0.00 3.55
3653 3964 6.724441 TGTTCTTCTTCCTCTTCTGTATACCA 59.276 38.462 0.00 0.00 0.00 3.25
3654 3965 7.171630 TGTTCTTCTTCCTCTTCTGTATACC 57.828 40.000 0.00 0.00 0.00 2.73
3655 3966 7.276878 GCTTGTTCTTCTTCCTCTTCTGTATAC 59.723 40.741 0.00 0.00 0.00 1.47
3656 3967 7.039011 TGCTTGTTCTTCTTCCTCTTCTGTATA 60.039 37.037 0.00 0.00 0.00 1.47
3657 3968 6.169800 GCTTGTTCTTCTTCCTCTTCTGTAT 58.830 40.000 0.00 0.00 0.00 2.29
3660 3996 4.384056 TGCTTGTTCTTCTTCCTCTTCTG 58.616 43.478 0.00 0.00 0.00 3.02
3662 3998 5.757850 TTTGCTTGTTCTTCTTCCTCTTC 57.242 39.130 0.00 0.00 0.00 2.87
3665 4001 6.080406 CGTATTTTGCTTGTTCTTCTTCCTC 58.920 40.000 0.00 0.00 0.00 3.71
3676 4012 3.142951 TGTACCTGCGTATTTTGCTTGT 58.857 40.909 0.00 0.00 0.00 3.16
3677 4013 3.426159 CCTGTACCTGCGTATTTTGCTTG 60.426 47.826 0.00 0.00 0.00 4.01
3681 4017 2.676342 GTCCCTGTACCTGCGTATTTTG 59.324 50.000 0.00 0.00 0.00 2.44
3687 4023 1.228769 TGAGTCCCTGTACCTGCGT 60.229 57.895 0.00 0.00 0.00 5.24
3688 4024 1.513158 CTGAGTCCCTGTACCTGCG 59.487 63.158 0.00 0.00 0.00 5.18
3689 4025 1.219393 GCTGAGTCCCTGTACCTGC 59.781 63.158 0.00 0.00 0.00 4.85
3690 4026 0.534412 CTGCTGAGTCCCTGTACCTG 59.466 60.000 0.00 0.00 0.00 4.00
3691 4027 0.616111 CCTGCTGAGTCCCTGTACCT 60.616 60.000 0.00 0.00 0.00 3.08
3692 4028 0.905337 ACCTGCTGAGTCCCTGTACC 60.905 60.000 0.00 0.00 0.00 3.34
3693 4029 0.977395 AACCTGCTGAGTCCCTGTAC 59.023 55.000 0.00 0.00 0.00 2.90
3694 4030 0.976641 CAACCTGCTGAGTCCCTGTA 59.023 55.000 0.00 0.00 0.00 2.74
3695 4031 1.757306 CAACCTGCTGAGTCCCTGT 59.243 57.895 0.00 0.00 0.00 4.00
3696 4032 1.002868 CCAACCTGCTGAGTCCCTG 60.003 63.158 0.00 0.00 0.00 4.45
3704 4040 4.332637 GTGCGTGCCAACCTGCTG 62.333 66.667 0.00 0.00 0.00 4.41
3777 4113 2.214216 AAGAGGTGCTACACGGCCA 61.214 57.895 2.24 0.00 34.83 5.36
3778 4114 1.741770 CAAGAGGTGCTACACGGCC 60.742 63.158 0.00 0.00 34.83 6.13
3805 4141 1.144057 GTGCCGACGGAGGATGATT 59.856 57.895 20.50 0.00 0.00 2.57
3807 4143 3.822192 CGTGCCGACGGAGGATGA 61.822 66.667 20.50 0.00 42.18 2.92
3879 4215 1.227764 CTGGTCATCATCAGGGGCG 60.228 63.158 0.00 0.00 0.00 6.13
3881 4217 0.549950 AAGCTGGTCATCATCAGGGG 59.450 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.