Multiple sequence alignment - TraesCS6D01G217300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G217300 chr6D 100.000 2799 0 0 1 2799 307108989 307111787 0.000000e+00 5169.0
1 TraesCS6D01G217300 chr6B 86.451 989 68 37 1184 2122 474426645 474427617 0.000000e+00 1024.0
2 TraesCS6D01G217300 chr6B 92.188 512 24 8 2291 2799 474428018 474428516 0.000000e+00 710.0
3 TraesCS6D01G217300 chr6A 86.203 877 114 5 200 1072 314831614 314830741 0.000000e+00 942.0
4 TraesCS6D01G217300 chr6A 92.857 644 31 12 2160 2796 443414940 443415575 0.000000e+00 920.0
5 TraesCS6D01G217300 chr6A 97.561 82 1 1 1810 1890 443414775 443414856 3.760000e-29 139.0
6 TraesCS6D01G217300 chr6A 97.619 42 1 0 2008 2049 443414882 443414923 3.870000e-09 73.1
7 TraesCS6D01G217300 chr4B 86.290 868 107 8 222 1083 476641744 476642605 0.000000e+00 933.0
8 TraesCS6D01G217300 chr4B 86.060 868 109 8 222 1083 44946982 44946121 0.000000e+00 922.0
9 TraesCS6D01G217300 chr4B 94.737 95 4 1 1866 1959 15414540 15414446 2.250000e-31 147.0
10 TraesCS6D01G217300 chr1B 86.239 872 100 12 222 1083 52491626 52492487 0.000000e+00 928.0
11 TraesCS6D01G217300 chr1B 86.334 761 99 4 297 1052 602073680 602074440 0.000000e+00 824.0
12 TraesCS6D01G217300 chr1B 83.287 359 50 6 827 1183 428631609 428631959 3.480000e-84 322.0
13 TraesCS6D01G217300 chr1B 77.035 344 35 22 2281 2621 658517480 658517782 1.040000e-34 158.0
14 TraesCS6D01G217300 chr1B 100.000 29 0 0 2195 2223 658517335 658517363 1.000000e-03 54.7
15 TraesCS6D01G217300 chr1D 86.527 861 92 17 236 1083 454622616 454623465 0.000000e+00 926.0
16 TraesCS6D01G217300 chr1D 97.790 181 4 0 1 181 439464687 439464867 2.090000e-81 313.0
17 TraesCS6D01G217300 chr1D 92.308 65 5 0 2068 2132 467611118 467611054 2.970000e-15 93.5
18 TraesCS6D01G217300 chr1D 89.831 59 6 0 1121 1179 454623526 454623584 2.990000e-10 76.8
19 TraesCS6D01G217300 chr2A 83.740 984 130 19 216 1183 624517771 624516802 0.000000e+00 904.0
20 TraesCS6D01G217300 chr2A 97.701 87 2 0 1865 1951 601729508 601729422 1.740000e-32 150.0
21 TraesCS6D01G217300 chr5A 83.216 995 139 17 213 1194 239395404 239396383 0.000000e+00 887.0
22 TraesCS6D01G217300 chr5A 93.750 96 4 2 1865 1958 598530079 598530174 2.910000e-30 143.0
23 TraesCS6D01G217300 chr1A 85.332 859 109 12 232 1083 569342811 569341963 0.000000e+00 872.0
24 TraesCS6D01G217300 chr4A 86.859 761 95 4 297 1052 664333839 664334599 0.000000e+00 846.0
25 TraesCS6D01G217300 chr4A 82.755 893 129 19 200 1083 624768115 624768991 0.000000e+00 773.0
26 TraesCS6D01G217300 chr4A 82.250 800 88 33 414 1183 201630906 201631681 2.350000e-180 641.0
27 TraesCS6D01G217300 chr4A 98.810 84 1 0 1867 1950 595271737 595271654 1.740000e-32 150.0
28 TraesCS6D01G217300 chr4A 95.699 93 3 1 1867 1959 595272895 595272804 6.250000e-32 148.0
29 TraesCS6D01G217300 chr7B 83.425 911 124 17 298 1193 332817057 332816159 0.000000e+00 821.0
30 TraesCS6D01G217300 chr7B 83.358 673 74 25 533 1188 566623577 566624228 3.110000e-164 588.0
31 TraesCS6D01G217300 chr7B 93.069 101 7 0 1 101 624785857 624785957 6.250000e-32 148.0
32 TraesCS6D01G217300 chr5D 82.206 798 92 26 414 1187 489169804 489170575 2.350000e-180 641.0
33 TraesCS6D01G217300 chr4D 87.407 135 9 1 2489 2623 414992611 414992485 6.250000e-32 148.0
34 TraesCS6D01G217300 chr4D 90.654 107 9 1 1840 1946 398275556 398275661 1.050000e-29 141.0
35 TraesCS6D01G217300 chr4D 78.448 116 3 10 2168 2275 414992958 414992857 3.890000e-04 56.5
36 TraesCS6D01G217300 chr5B 94.681 94 3 2 1865 1957 11083175 11083083 8.080000e-31 145.0
37 TraesCS6D01G217300 chr5B 89.655 58 1 2 1126 1183 425387130 425387182 5.000000e-08 69.4
38 TraesCS6D01G217300 chr3B 95.604 91 3 1 1854 1944 543724317 543724228 8.080000e-31 145.0
39 TraesCS6D01G217300 chr2B 96.386 83 3 0 1107 1189 737271095 737271177 1.350000e-28 137.0
40 TraesCS6D01G217300 chr2B 79.888 179 27 4 1009 1186 547916016 547915846 3.790000e-24 122.0
41 TraesCS6D01G217300 chr2B 92.537 67 5 0 1118 1184 770777668 770777734 2.290000e-16 97.1
42 TraesCS6D01G217300 chr2B 92.308 39 3 0 2072 2110 480941263 480941301 3.890000e-04 56.5
43 TraesCS6D01G217300 chr7D 96.491 57 2 0 1128 1184 221354179 221354235 8.250000e-16 95.3
44 TraesCS6D01G217300 chr7A 91.176 68 5 1 1118 1184 92806502 92806569 1.070000e-14 91.6
45 TraesCS6D01G217300 chr2D 92.500 40 0 3 1148 1184 129970055 129970094 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G217300 chr6D 307108989 307111787 2798 False 5169.000000 5169 100.000000 1 2799 1 chr6D.!!$F1 2798
1 TraesCS6D01G217300 chr6B 474426645 474428516 1871 False 867.000000 1024 89.319500 1184 2799 2 chr6B.!!$F1 1615
2 TraesCS6D01G217300 chr6A 314830741 314831614 873 True 942.000000 942 86.203000 200 1072 1 chr6A.!!$R1 872
3 TraesCS6D01G217300 chr6A 443414775 443415575 800 False 377.366667 920 96.012333 1810 2796 3 chr6A.!!$F1 986
4 TraesCS6D01G217300 chr4B 476641744 476642605 861 False 933.000000 933 86.290000 222 1083 1 chr4B.!!$F1 861
5 TraesCS6D01G217300 chr4B 44946121 44946982 861 True 922.000000 922 86.060000 222 1083 1 chr4B.!!$R2 861
6 TraesCS6D01G217300 chr1B 52491626 52492487 861 False 928.000000 928 86.239000 222 1083 1 chr1B.!!$F1 861
7 TraesCS6D01G217300 chr1B 602073680 602074440 760 False 824.000000 824 86.334000 297 1052 1 chr1B.!!$F3 755
8 TraesCS6D01G217300 chr1D 454622616 454623584 968 False 501.400000 926 88.179000 236 1179 2 chr1D.!!$F2 943
9 TraesCS6D01G217300 chr2A 624516802 624517771 969 True 904.000000 904 83.740000 216 1183 1 chr2A.!!$R2 967
10 TraesCS6D01G217300 chr5A 239395404 239396383 979 False 887.000000 887 83.216000 213 1194 1 chr5A.!!$F1 981
11 TraesCS6D01G217300 chr1A 569341963 569342811 848 True 872.000000 872 85.332000 232 1083 1 chr1A.!!$R1 851
12 TraesCS6D01G217300 chr4A 664333839 664334599 760 False 846.000000 846 86.859000 297 1052 1 chr4A.!!$F3 755
13 TraesCS6D01G217300 chr4A 624768115 624768991 876 False 773.000000 773 82.755000 200 1083 1 chr4A.!!$F2 883
14 TraesCS6D01G217300 chr4A 201630906 201631681 775 False 641.000000 641 82.250000 414 1183 1 chr4A.!!$F1 769
15 TraesCS6D01G217300 chr7B 332816159 332817057 898 True 821.000000 821 83.425000 298 1193 1 chr7B.!!$R1 895
16 TraesCS6D01G217300 chr7B 566623577 566624228 651 False 588.000000 588 83.358000 533 1188 1 chr7B.!!$F1 655
17 TraesCS6D01G217300 chr5D 489169804 489170575 771 False 641.000000 641 82.206000 414 1187 1 chr5D.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.179468 GCCCGGCAGTGTATTTCCTA 59.821 55.0 3.91 0.0 0.0 2.94 F
1295 1837 0.028505 CACACTTGCACACTGACAGC 59.971 55.0 1.25 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 2127 0.179100 CGCAGACAATCATCCTCCGT 60.179 55.0 0.0 0.00 0.0 4.69 R
2136 2728 0.034896 CTCAGGTTAACACGGTGCCT 59.965 55.0 8.3 3.54 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.702048 ATGTGTACGCCCGGCAGT 61.702 61.111 10.77 10.86 0.00 4.40
18 19 3.950794 ATGTGTACGCCCGGCAGTG 62.951 63.158 10.77 0.14 0.00 3.66
20 21 2.990395 TGTACGCCCGGCAGTGTA 60.990 61.111 10.77 5.30 0.00 2.90
21 22 2.352821 TGTACGCCCGGCAGTGTAT 61.353 57.895 10.77 0.00 35.35 2.29
22 23 1.153509 GTACGCCCGGCAGTGTATT 60.154 57.895 10.77 0.00 35.35 1.89
23 24 0.741927 GTACGCCCGGCAGTGTATTT 60.742 55.000 10.77 0.00 35.35 1.40
24 25 0.460635 TACGCCCGGCAGTGTATTTC 60.461 55.000 10.77 0.00 0.00 2.17
25 26 2.469516 CGCCCGGCAGTGTATTTCC 61.470 63.158 10.77 0.00 0.00 3.13
26 27 1.077716 GCCCGGCAGTGTATTTCCT 60.078 57.895 3.91 0.00 0.00 3.36
27 28 0.179468 GCCCGGCAGTGTATTTCCTA 59.821 55.000 3.91 0.00 0.00 2.94
28 29 1.949465 CCCGGCAGTGTATTTCCTAC 58.051 55.000 0.00 0.00 0.00 3.18
29 30 1.485066 CCCGGCAGTGTATTTCCTACT 59.515 52.381 0.00 0.00 0.00 2.57
30 31 2.093128 CCCGGCAGTGTATTTCCTACTT 60.093 50.000 0.00 0.00 0.00 2.24
31 32 3.606687 CCGGCAGTGTATTTCCTACTTT 58.393 45.455 0.00 0.00 0.00 2.66
32 33 3.374058 CCGGCAGTGTATTTCCTACTTTG 59.626 47.826 0.00 0.00 0.00 2.77
33 34 4.250464 CGGCAGTGTATTTCCTACTTTGA 58.750 43.478 0.00 0.00 0.00 2.69
34 35 4.092968 CGGCAGTGTATTTCCTACTTTGAC 59.907 45.833 0.00 0.00 0.00 3.18
35 36 4.092968 GGCAGTGTATTTCCTACTTTGACG 59.907 45.833 0.00 0.00 0.00 4.35
36 37 4.435651 GCAGTGTATTTCCTACTTTGACGC 60.436 45.833 0.00 0.00 0.00 5.19
37 38 4.092968 CAGTGTATTTCCTACTTTGACGCC 59.907 45.833 0.00 0.00 0.00 5.68
38 39 3.061697 GTGTATTTCCTACTTTGACGCCG 59.938 47.826 0.00 0.00 0.00 6.46
39 40 1.734163 ATTTCCTACTTTGACGCCGG 58.266 50.000 0.00 0.00 0.00 6.13
40 41 0.952010 TTTCCTACTTTGACGCCGGC 60.952 55.000 19.07 19.07 0.00 6.13
41 42 2.791501 TTCCTACTTTGACGCCGGCC 62.792 60.000 23.46 8.57 0.00 6.13
42 43 3.186047 CTACTTTGACGCCGGCCG 61.186 66.667 23.46 21.04 44.21 6.13
51 52 4.160635 CGCCGGCCGTGATTTGAC 62.161 66.667 26.12 3.02 0.00 3.18
52 53 3.810896 GCCGGCCGTGATTTGACC 61.811 66.667 26.12 0.00 0.00 4.02
53 54 3.131478 CCGGCCGTGATTTGACCC 61.131 66.667 26.12 0.00 0.00 4.46
54 55 3.496131 CGGCCGTGATTTGACCCG 61.496 66.667 19.50 0.00 0.00 5.28
55 56 2.046700 GGCCGTGATTTGACCCGA 60.047 61.111 0.00 0.00 0.00 5.14
56 57 2.106683 GGCCGTGATTTGACCCGAG 61.107 63.158 0.00 0.00 0.00 4.63
57 58 1.375523 GCCGTGATTTGACCCGAGT 60.376 57.895 0.00 0.00 0.00 4.18
58 59 1.635663 GCCGTGATTTGACCCGAGTG 61.636 60.000 0.00 0.00 0.00 3.51
59 60 1.019278 CCGTGATTTGACCCGAGTGG 61.019 60.000 0.00 0.00 41.37 4.00
72 73 3.939066 CCCGAGTGGTCAATTACTTTCT 58.061 45.455 0.00 0.00 0.00 2.52
73 74 4.324267 CCCGAGTGGTCAATTACTTTCTT 58.676 43.478 0.00 0.00 0.00 2.52
74 75 4.154195 CCCGAGTGGTCAATTACTTTCTTG 59.846 45.833 0.00 0.00 0.00 3.02
75 76 4.378459 CCGAGTGGTCAATTACTTTCTTGC 60.378 45.833 0.00 0.00 0.00 4.01
76 77 4.452455 CGAGTGGTCAATTACTTTCTTGCT 59.548 41.667 0.00 0.00 0.00 3.91
77 78 5.637810 CGAGTGGTCAATTACTTTCTTGCTA 59.362 40.000 0.00 0.00 0.00 3.49
78 79 6.313905 CGAGTGGTCAATTACTTTCTTGCTAT 59.686 38.462 0.00 0.00 0.00 2.97
79 80 7.148407 CGAGTGGTCAATTACTTTCTTGCTATT 60.148 37.037 0.00 0.00 0.00 1.73
80 81 7.820648 AGTGGTCAATTACTTTCTTGCTATTG 58.179 34.615 0.00 0.00 0.00 1.90
81 82 7.665559 AGTGGTCAATTACTTTCTTGCTATTGA 59.334 33.333 0.00 0.00 31.63 2.57
82 83 7.965107 GTGGTCAATTACTTTCTTGCTATTGAG 59.035 37.037 0.00 0.00 33.96 3.02
83 84 7.665559 TGGTCAATTACTTTCTTGCTATTGAGT 59.334 33.333 0.00 0.00 33.96 3.41
84 85 8.515414 GGTCAATTACTTTCTTGCTATTGAGTT 58.485 33.333 0.00 0.00 33.96 3.01
85 86 9.548208 GTCAATTACTTTCTTGCTATTGAGTTC 57.452 33.333 0.00 0.00 33.96 3.01
86 87 9.283768 TCAATTACTTTCTTGCTATTGAGTTCA 57.716 29.630 0.00 0.00 30.85 3.18
89 90 9.678260 ATTACTTTCTTGCTATTGAGTTCATCT 57.322 29.630 0.00 0.00 0.00 2.90
90 91 7.992754 ACTTTCTTGCTATTGAGTTCATCTT 57.007 32.000 0.00 0.00 0.00 2.40
91 92 8.401490 ACTTTCTTGCTATTGAGTTCATCTTT 57.599 30.769 0.00 0.00 0.00 2.52
92 93 8.854117 ACTTTCTTGCTATTGAGTTCATCTTTT 58.146 29.630 0.00 0.00 0.00 2.27
93 94 9.688592 CTTTCTTGCTATTGAGTTCATCTTTTT 57.311 29.630 0.00 0.00 0.00 1.94
94 95 9.467258 TTTCTTGCTATTGAGTTCATCTTTTTG 57.533 29.630 0.00 0.00 0.00 2.44
95 96 7.596494 TCTTGCTATTGAGTTCATCTTTTTGG 58.404 34.615 0.00 0.00 0.00 3.28
96 97 5.713025 TGCTATTGAGTTCATCTTTTTGGC 58.287 37.500 0.00 0.00 0.00 4.52
97 98 5.243507 TGCTATTGAGTTCATCTTTTTGGCA 59.756 36.000 0.00 0.00 0.00 4.92
98 99 6.158598 GCTATTGAGTTCATCTTTTTGGCAA 58.841 36.000 0.00 0.00 0.00 4.52
99 100 6.815142 GCTATTGAGTTCATCTTTTTGGCAAT 59.185 34.615 0.00 0.00 0.00 3.56
100 101 7.201496 GCTATTGAGTTCATCTTTTTGGCAATG 60.201 37.037 0.00 0.00 0.00 2.82
101 102 5.534207 TGAGTTCATCTTTTTGGCAATGT 57.466 34.783 0.00 0.00 0.00 2.71
102 103 6.647334 TGAGTTCATCTTTTTGGCAATGTA 57.353 33.333 0.00 0.00 0.00 2.29
103 104 7.048629 TGAGTTCATCTTTTTGGCAATGTAA 57.951 32.000 0.00 0.00 0.00 2.41
104 105 7.669427 TGAGTTCATCTTTTTGGCAATGTAAT 58.331 30.769 0.00 0.00 0.00 1.89
105 106 8.801299 TGAGTTCATCTTTTTGGCAATGTAATA 58.199 29.630 0.00 0.00 0.00 0.98
106 107 8.986477 AGTTCATCTTTTTGGCAATGTAATAC 57.014 30.769 0.00 0.00 0.00 1.89
107 108 8.034804 AGTTCATCTTTTTGGCAATGTAATACC 58.965 33.333 0.00 0.00 0.00 2.73
108 109 6.872920 TCATCTTTTTGGCAATGTAATACCC 58.127 36.000 0.00 0.00 0.00 3.69
109 110 5.317733 TCTTTTTGGCAATGTAATACCCG 57.682 39.130 0.00 0.00 0.00 5.28
110 111 4.767928 TCTTTTTGGCAATGTAATACCCGT 59.232 37.500 0.00 0.00 0.00 5.28
111 112 5.244178 TCTTTTTGGCAATGTAATACCCGTT 59.756 36.000 0.00 0.00 0.00 4.44
112 113 4.705337 TTTGGCAATGTAATACCCGTTC 57.295 40.909 0.00 0.00 0.00 3.95
113 114 2.281517 TGGCAATGTAATACCCGTTCG 58.718 47.619 0.00 0.00 0.00 3.95
114 115 2.282407 GGCAATGTAATACCCGTTCGT 58.718 47.619 0.00 0.00 0.00 3.85
115 116 2.286025 GGCAATGTAATACCCGTTCGTC 59.714 50.000 0.00 0.00 0.00 4.20
116 117 2.286025 GCAATGTAATACCCGTTCGTCC 59.714 50.000 0.00 0.00 0.00 4.79
117 118 3.523547 CAATGTAATACCCGTTCGTCCA 58.476 45.455 0.00 0.00 0.00 4.02
118 119 3.891422 ATGTAATACCCGTTCGTCCAA 57.109 42.857 0.00 0.00 0.00 3.53
119 120 3.235157 TGTAATACCCGTTCGTCCAAG 57.765 47.619 0.00 0.00 0.00 3.61
120 121 2.562298 TGTAATACCCGTTCGTCCAAGT 59.438 45.455 0.00 0.00 0.00 3.16
121 122 3.761218 TGTAATACCCGTTCGTCCAAGTA 59.239 43.478 0.00 0.00 0.00 2.24
122 123 4.402155 TGTAATACCCGTTCGTCCAAGTAT 59.598 41.667 0.00 0.00 0.00 2.12
123 124 5.592282 TGTAATACCCGTTCGTCCAAGTATA 59.408 40.000 0.00 0.00 0.00 1.47
124 125 5.796424 AATACCCGTTCGTCCAAGTATAT 57.204 39.130 0.00 0.00 0.00 0.86
125 126 3.447918 ACCCGTTCGTCCAAGTATATG 57.552 47.619 0.00 0.00 0.00 1.78
126 127 2.762327 ACCCGTTCGTCCAAGTATATGT 59.238 45.455 0.00 0.00 0.00 2.29
127 128 3.120792 CCCGTTCGTCCAAGTATATGTG 58.879 50.000 0.00 0.00 0.00 3.21
128 129 3.429822 CCCGTTCGTCCAAGTATATGTGT 60.430 47.826 0.00 0.00 0.00 3.72
129 130 4.178540 CCGTTCGTCCAAGTATATGTGTT 58.821 43.478 0.00 0.00 0.00 3.32
130 131 5.342433 CCGTTCGTCCAAGTATATGTGTTA 58.658 41.667 0.00 0.00 0.00 2.41
131 132 5.806502 CCGTTCGTCCAAGTATATGTGTTAA 59.193 40.000 0.00 0.00 0.00 2.01
132 133 6.237648 CCGTTCGTCCAAGTATATGTGTTAAC 60.238 42.308 0.00 0.00 0.00 2.01
133 134 6.308524 CGTTCGTCCAAGTATATGTGTTAACA 59.691 38.462 3.59 3.59 41.58 2.41
134 135 7.148771 CGTTCGTCCAAGTATATGTGTTAACAA 60.149 37.037 10.51 1.41 40.46 2.83
135 136 7.585286 TCGTCCAAGTATATGTGTTAACAAC 57.415 36.000 10.51 4.52 40.46 3.32
136 137 7.153315 TCGTCCAAGTATATGTGTTAACAACA 58.847 34.615 10.51 11.14 40.46 3.33
137 138 7.329962 TCGTCCAAGTATATGTGTTAACAACAG 59.670 37.037 10.51 1.96 43.10 3.16
138 139 7.241376 GTCCAAGTATATGTGTTAACAACAGC 58.759 38.462 10.51 0.00 43.10 4.40
139 140 6.373216 TCCAAGTATATGTGTTAACAACAGCC 59.627 38.462 10.51 0.00 43.10 4.85
140 141 6.247903 CAAGTATATGTGTTAACAACAGCCG 58.752 40.000 10.51 0.00 43.10 5.52
141 142 5.726397 AGTATATGTGTTAACAACAGCCGA 58.274 37.500 10.51 0.02 43.10 5.54
142 143 6.167685 AGTATATGTGTTAACAACAGCCGAA 58.832 36.000 10.51 0.00 43.10 4.30
143 144 5.950758 ATATGTGTTAACAACAGCCGAAA 57.049 34.783 10.51 0.00 43.10 3.46
144 145 3.684103 TGTGTTAACAACAGCCGAAAG 57.316 42.857 10.51 0.00 43.10 2.62
145 146 2.223386 TGTGTTAACAACAGCCGAAAGC 60.223 45.455 10.51 0.00 43.10 3.51
146 147 1.335496 TGTTAACAACAGCCGAAAGCC 59.665 47.619 5.64 0.00 45.47 4.35
147 148 0.955905 TTAACAACAGCCGAAAGCCC 59.044 50.000 0.00 0.00 45.47 5.19
148 149 0.891904 TAACAACAGCCGAAAGCCCC 60.892 55.000 0.00 0.00 45.47 5.80
149 150 3.737172 CAACAGCCGAAAGCCCCG 61.737 66.667 0.00 0.00 45.47 5.73
150 151 3.948719 AACAGCCGAAAGCCCCGA 61.949 61.111 0.00 0.00 45.47 5.14
151 152 3.268103 AACAGCCGAAAGCCCCGAT 62.268 57.895 0.00 0.00 45.47 4.18
152 153 1.906105 AACAGCCGAAAGCCCCGATA 61.906 55.000 0.00 0.00 45.47 2.92
153 154 1.153249 CAGCCGAAAGCCCCGATAA 60.153 57.895 0.00 0.00 45.47 1.75
154 155 0.535102 CAGCCGAAAGCCCCGATAAT 60.535 55.000 0.00 0.00 45.47 1.28
155 156 0.535102 AGCCGAAAGCCCCGATAATG 60.535 55.000 0.00 0.00 45.47 1.90
156 157 0.534203 GCCGAAAGCCCCGATAATGA 60.534 55.000 0.00 0.00 34.35 2.57
157 158 1.882352 GCCGAAAGCCCCGATAATGAT 60.882 52.381 0.00 0.00 34.35 2.45
158 159 2.504367 CCGAAAGCCCCGATAATGATT 58.496 47.619 0.00 0.00 0.00 2.57
159 160 2.484264 CCGAAAGCCCCGATAATGATTC 59.516 50.000 0.00 0.00 0.00 2.52
160 161 2.484264 CGAAAGCCCCGATAATGATTCC 59.516 50.000 0.00 0.00 0.00 3.01
161 162 3.486383 GAAAGCCCCGATAATGATTCCA 58.514 45.455 0.00 0.00 0.00 3.53
162 163 3.593442 AAGCCCCGATAATGATTCCAA 57.407 42.857 0.00 0.00 0.00 3.53
163 164 2.863809 AGCCCCGATAATGATTCCAAC 58.136 47.619 0.00 0.00 0.00 3.77
164 165 2.174639 AGCCCCGATAATGATTCCAACA 59.825 45.455 0.00 0.00 0.00 3.33
165 166 2.955660 GCCCCGATAATGATTCCAACAA 59.044 45.455 0.00 0.00 0.00 2.83
166 167 3.573967 GCCCCGATAATGATTCCAACAAT 59.426 43.478 0.00 0.00 0.00 2.71
167 168 4.039124 GCCCCGATAATGATTCCAACAATT 59.961 41.667 0.00 0.00 0.00 2.32
168 169 5.453198 GCCCCGATAATGATTCCAACAATTT 60.453 40.000 0.00 0.00 0.00 1.82
169 170 5.984926 CCCCGATAATGATTCCAACAATTTG 59.015 40.000 0.00 0.00 0.00 2.32
170 171 5.463061 CCCGATAATGATTCCAACAATTTGC 59.537 40.000 0.00 0.00 0.00 3.68
171 172 6.041511 CCGATAATGATTCCAACAATTTGCA 58.958 36.000 0.00 0.00 0.00 4.08
172 173 6.019640 CCGATAATGATTCCAACAATTTGCAC 60.020 38.462 0.00 0.00 0.00 4.57
173 174 6.753279 CGATAATGATTCCAACAATTTGCACT 59.247 34.615 0.00 0.00 0.00 4.40
174 175 7.914871 CGATAATGATTCCAACAATTTGCACTA 59.085 33.333 0.00 0.00 0.00 2.74
175 176 9.241317 GATAATGATTCCAACAATTTGCACTAG 57.759 33.333 0.00 0.00 0.00 2.57
176 177 6.594788 ATGATTCCAACAATTTGCACTAGT 57.405 33.333 0.00 0.00 0.00 2.57
177 178 7.701539 ATGATTCCAACAATTTGCACTAGTA 57.298 32.000 0.00 0.00 0.00 1.82
178 179 6.908825 TGATTCCAACAATTTGCACTAGTAC 58.091 36.000 0.00 0.00 0.00 2.73
179 180 6.488344 TGATTCCAACAATTTGCACTAGTACA 59.512 34.615 0.00 0.00 0.00 2.90
180 181 6.701145 TTCCAACAATTTGCACTAGTACAA 57.299 33.333 4.33 4.33 0.00 2.41
181 182 6.701145 TCCAACAATTTGCACTAGTACAAA 57.299 33.333 20.75 20.75 39.87 2.83
182 183 7.283625 TCCAACAATTTGCACTAGTACAAAT 57.716 32.000 22.94 22.94 45.84 2.32
192 193 9.991906 TTTGCACTAGTACAAATTACTAAGAGT 57.008 29.630 15.82 0.00 31.09 3.24
281 285 3.968649 AGTTGCACACACATTGATGTTC 58.031 40.909 0.00 0.00 39.39 3.18
293 297 2.189594 TGATGTTCAGTTGGCAGGAG 57.810 50.000 0.00 0.00 0.00 3.69
294 298 1.699083 TGATGTTCAGTTGGCAGGAGA 59.301 47.619 0.00 0.00 0.00 3.71
308 312 2.806745 GCAGGAGAACTAGTTGCACACA 60.807 50.000 14.14 0.00 34.99 3.72
310 314 1.792949 GGAGAACTAGTTGCACACACG 59.207 52.381 14.14 0.00 0.00 4.49
311 315 2.545113 GGAGAACTAGTTGCACACACGA 60.545 50.000 14.14 0.00 0.00 4.35
312 316 3.318017 GAGAACTAGTTGCACACACGAT 58.682 45.455 14.14 0.00 0.00 3.73
313 317 3.059884 AGAACTAGTTGCACACACGATG 58.940 45.455 14.14 0.00 0.00 3.84
315 319 3.319137 ACTAGTTGCACACACGATGAT 57.681 42.857 0.00 0.00 0.00 2.45
316 320 2.995939 ACTAGTTGCACACACGATGATG 59.004 45.455 0.00 0.00 0.00 3.07
319 408 2.618241 AGTTGCACACACGATGATGTTT 59.382 40.909 0.00 0.00 0.00 2.83
353 482 4.394439 TGTAGTCTAGTTGCACACACAA 57.606 40.909 0.00 0.00 0.00 3.33
355 484 6.091718 TGTAGTCTAGTTGCACACACAATA 57.908 37.500 0.00 0.00 0.00 1.90
403 533 4.768583 TGCACATACATATGCTCAGTTGA 58.231 39.130 1.58 0.00 42.55 3.18
409 539 6.881065 ACATACATATGCTCAGTTGACTTGTT 59.119 34.615 1.58 0.00 37.19 2.83
410 540 7.391554 ACATACATATGCTCAGTTGACTTGTTT 59.608 33.333 1.58 0.00 37.19 2.83
473 603 4.641396 ACACTAGTTGCACACACATATGT 58.359 39.130 1.41 1.41 40.80 2.29
497 627 1.017177 TTGACGCGGCAATGTAGTCC 61.017 55.000 26.47 0.00 0.00 3.85
502 632 0.447801 GCGGCAATGTAGTCCAGTTG 59.552 55.000 0.00 0.00 0.00 3.16
507 637 2.293122 GCAATGTAGTCCAGTTGCACAA 59.707 45.455 4.26 0.00 44.63 3.33
513 643 3.441496 AGTCCAGTTGCACAAACATTG 57.559 42.857 0.00 0.00 41.61 2.82
522 652 7.814107 CCAGTTGCACAAACATTGATATTTAGT 59.186 33.333 0.00 0.00 41.61 2.24
525 655 9.190858 GTTGCACAAACATTGATATTTAGTTGA 57.809 29.630 0.00 0.00 38.75 3.18
528 658 8.853345 GCACAAACATTGATATTTAGTTGACAG 58.147 33.333 0.00 0.00 0.00 3.51
680 1097 5.163468 ACACACATTGATGTTTAGTTGGCAA 60.163 36.000 0.00 0.00 39.39 4.52
727 1225 2.526120 GGCGCGGCAATGTAGTCTC 61.526 63.158 29.32 0.00 0.00 3.36
746 1244 3.063861 TCTCGTTGCACACATATTGATGC 59.936 43.478 0.00 0.00 36.43 3.91
797 1300 2.502510 CAGTTGGCGCGACAATGC 60.503 61.111 32.77 19.38 32.24 3.56
888 1393 4.691216 GGATCTACTTTTGAAGAGCACGTT 59.309 41.667 0.00 0.00 0.00 3.99
945 1450 3.364621 TCGACACGCGGTTTAAAAGATAC 59.635 43.478 12.47 0.00 41.33 2.24
951 1456 4.090498 ACGCGGTTTAAAAGATACGTCTTC 59.910 41.667 12.47 0.00 43.80 2.87
1041 1556 1.406069 GGCATCCATCACGTGAGAAGT 60.406 52.381 24.41 3.69 0.00 3.01
1054 1569 6.642540 TCACGTGAGAAGTGATCATATAATGC 59.357 38.462 15.76 0.00 42.91 3.56
1077 1593 8.276060 TGCGTGATTAATTAACAGTGTTTTTC 57.724 30.769 14.90 0.02 0.00 2.29
1085 1601 9.959749 TTAATTAACAGTGTTTTTCTTAGCCAG 57.040 29.630 14.90 0.00 0.00 4.85
1215 1756 3.121463 CGTAACCGATTCGAATTGGATCG 60.121 47.826 39.48 32.38 41.71 3.69
1228 1769 2.869101 TGGATCGACACCCAATTTCA 57.131 45.000 7.82 0.00 0.00 2.69
1231 1772 1.743394 GATCGACACCCAATTTCACCC 59.257 52.381 0.00 0.00 0.00 4.61
1252 1794 1.133181 TGCAACAGATGTCCCCTGGA 61.133 55.000 0.00 0.00 36.03 3.86
1295 1837 0.028505 CACACTTGCACACTGACAGC 59.971 55.000 1.25 0.00 0.00 4.40
1303 1845 2.125753 CACTGACAGCGCCTCCTC 60.126 66.667 2.29 0.00 0.00 3.71
1334 1877 1.032014 AACTCCAACATGCACACACC 58.968 50.000 0.00 0.00 0.00 4.16
1364 1907 4.639310 ACTCGTAATCTCCACGTAGTTGAT 59.361 41.667 0.00 0.00 41.61 2.57
1365 1908 5.819379 ACTCGTAATCTCCACGTAGTTGATA 59.181 40.000 0.00 0.00 41.61 2.15
1392 1935 1.888512 ACGGCTTGCTTGATGTTGATT 59.111 42.857 0.00 0.00 0.00 2.57
1520 2063 0.549950 AAGCTGGTCATCATCAGGGG 59.450 55.000 0.00 0.00 0.00 4.79
1522 2065 1.227764 CTGGTCATCATCAGGGGCG 60.228 63.158 0.00 0.00 0.00 6.13
1594 2137 3.822192 CGTGCCGACGGAGGATGA 61.822 66.667 20.50 0.00 42.18 2.92
1596 2139 1.144057 GTGCCGACGGAGGATGATT 59.856 57.895 20.50 0.00 0.00 2.57
1623 2166 1.741770 CAAGAGGTGCTACACGGCC 60.742 63.158 0.00 0.00 34.83 6.13
1624 2167 2.214216 AAGAGGTGCTACACGGCCA 61.214 57.895 2.24 0.00 34.83 5.36
1697 2240 4.332637 GTGCGTGCCAACCTGCTG 62.333 66.667 0.00 0.00 0.00 4.41
1705 2248 1.002868 CCAACCTGCTGAGTCCCTG 60.003 63.158 0.00 0.00 0.00 4.45
1706 2249 1.757306 CAACCTGCTGAGTCCCTGT 59.243 57.895 0.00 0.00 0.00 4.00
1707 2250 0.976641 CAACCTGCTGAGTCCCTGTA 59.023 55.000 0.00 0.00 0.00 2.74
1708 2251 0.977395 AACCTGCTGAGTCCCTGTAC 59.023 55.000 0.00 0.00 0.00 2.90
1709 2252 0.905337 ACCTGCTGAGTCCCTGTACC 60.905 60.000 0.00 0.00 0.00 3.34
1710 2253 0.616111 CCTGCTGAGTCCCTGTACCT 60.616 60.000 0.00 0.00 0.00 3.08
1711 2254 0.534412 CTGCTGAGTCCCTGTACCTG 59.466 60.000 0.00 0.00 0.00 4.00
1712 2255 1.219393 GCTGAGTCCCTGTACCTGC 59.781 63.158 0.00 0.00 0.00 4.85
1713 2256 1.513158 CTGAGTCCCTGTACCTGCG 59.487 63.158 0.00 0.00 0.00 5.18
1714 2257 1.228769 TGAGTCCCTGTACCTGCGT 60.229 57.895 0.00 0.00 0.00 5.24
1720 2263 2.676342 GTCCCTGTACCTGCGTATTTTG 59.324 50.000 0.00 0.00 0.00 2.44
1724 2267 3.426159 CCTGTACCTGCGTATTTTGCTTG 60.426 47.826 0.00 0.00 0.00 4.01
1725 2268 3.142951 TGTACCTGCGTATTTTGCTTGT 58.857 40.909 0.00 0.00 0.00 3.16
1736 2279 6.080406 CGTATTTTGCTTGTTCTTCTTCCTC 58.920 40.000 0.00 0.00 0.00 3.71
1739 2282 5.757850 TTTGCTTGTTCTTCTTCCTCTTC 57.242 39.130 0.00 0.00 0.00 2.87
1741 2284 4.384056 TGCTTGTTCTTCTTCCTCTTCTG 58.616 43.478 0.00 0.00 0.00 3.02
1743 2286 5.070446 TGCTTGTTCTTCTTCCTCTTCTGTA 59.930 40.000 0.00 0.00 0.00 2.74
1745 2288 7.039011 TGCTTGTTCTTCTTCCTCTTCTGTATA 60.039 37.037 0.00 0.00 0.00 1.47
1746 2289 7.276878 GCTTGTTCTTCTTCCTCTTCTGTATAC 59.723 40.741 0.00 0.00 0.00 1.47
1748 2291 6.724441 TGTTCTTCTTCCTCTTCTGTATACCA 59.276 38.462 0.00 0.00 0.00 3.25
1749 2292 7.400339 TGTTCTTCTTCCTCTTCTGTATACCAT 59.600 37.037 0.00 0.00 0.00 3.55
1751 2294 8.380742 TCTTCTTCCTCTTCTGTATACCATTT 57.619 34.615 0.00 0.00 0.00 2.32
1752 2295 8.826765 TCTTCTTCCTCTTCTGTATACCATTTT 58.173 33.333 0.00 0.00 0.00 1.82
1753 2296 9.454859 CTTCTTCCTCTTCTGTATACCATTTTT 57.545 33.333 0.00 0.00 0.00 1.94
1755 2298 8.826765 TCTTCCTCTTCTGTATACCATTTTTCT 58.173 33.333 0.00 0.00 0.00 2.52
1758 2301 8.204836 TCCTCTTCTGTATACCATTTTTCTAGC 58.795 37.037 0.00 0.00 0.00 3.42
1759 2302 7.987458 CCTCTTCTGTATACCATTTTTCTAGCA 59.013 37.037 0.00 0.00 0.00 3.49
1760 2303 9.553064 CTCTTCTGTATACCATTTTTCTAGCAT 57.447 33.333 0.00 0.00 0.00 3.79
1761 2304 9.330063 TCTTCTGTATACCATTTTTCTAGCATG 57.670 33.333 0.00 0.00 0.00 4.06
1762 2305 7.496529 TCTGTATACCATTTTTCTAGCATGC 57.503 36.000 10.51 10.51 0.00 4.06
1763 2306 6.486657 TCTGTATACCATTTTTCTAGCATGCC 59.513 38.462 15.66 0.00 0.00 4.40
1765 2308 3.874392 ACCATTTTTCTAGCATGCCAC 57.126 42.857 15.66 0.00 0.00 5.01
1766 2309 2.497273 ACCATTTTTCTAGCATGCCACC 59.503 45.455 15.66 0.00 0.00 4.61
1767 2310 2.480073 CCATTTTTCTAGCATGCCACCG 60.480 50.000 15.66 0.02 0.00 4.94
1775 2343 0.611618 AGCATGCCACCGATTTTGGA 60.612 50.000 15.66 0.00 36.02 3.53
1778 2346 1.322538 ATGCCACCGATTTTGGAGCC 61.323 55.000 0.00 0.00 36.02 4.70
1790 2358 4.785453 GGAGCCTGTGCCTTCCGG 62.785 72.222 0.00 0.00 38.69 5.14
1795 2363 1.966451 CCTGTGCCTTCCGGACAAC 60.966 63.158 1.83 0.22 0.00 3.32
1796 2364 1.071471 CTGTGCCTTCCGGACAACT 59.929 57.895 1.83 0.00 0.00 3.16
1797 2365 0.951040 CTGTGCCTTCCGGACAACTC 60.951 60.000 1.83 0.00 0.00 3.01
1801 2370 1.314730 GCCTTCCGGACAACTCAAAA 58.685 50.000 1.83 0.00 0.00 2.44
1968 2538 6.073447 TGGTGACAAATTATCCATGGTACT 57.927 37.500 12.58 0.38 37.44 2.73
1971 2541 7.093988 TGGTGACAAATTATCCATGGTACTTTG 60.094 37.037 21.75 21.75 37.44 2.77
1983 2553 9.950496 ATCCATGGTACTTTGTAAGATATCATC 57.050 33.333 12.58 0.00 0.00 2.92
1984 2554 9.159254 TCCATGGTACTTTGTAAGATATCATCT 57.841 33.333 12.58 0.00 42.61 2.90
1985 2555 9.212641 CCATGGTACTTTGTAAGATATCATCTG 57.787 37.037 2.57 0.00 40.13 2.90
1986 2556 9.987272 CATGGTACTTTGTAAGATATCATCTGA 57.013 33.333 5.32 0.00 40.13 3.27
1988 2558 9.817809 TGGTACTTTGTAAGATATCATCTGAAC 57.182 33.333 5.32 0.00 40.13 3.18
1996 2566 9.755804 TGTAAGATATCATCTGAACTGTCATTC 57.244 33.333 5.32 0.00 40.13 2.67
2102 2694 5.070001 AGCTAACTGCCACAAAATGAACTA 58.930 37.500 0.00 0.00 44.23 2.24
2110 2702 5.238432 TGCCACAAAATGAACTAGTGTGTAG 59.762 40.000 0.00 0.00 38.30 2.74
2122 2714 9.309516 TGAACTAGTGTGTAGAACTTTTTGTAG 57.690 33.333 0.00 0.00 0.00 2.74
2123 2715 9.525409 GAACTAGTGTGTAGAACTTTTTGTAGA 57.475 33.333 0.00 0.00 0.00 2.59
2124 2716 9.880157 AACTAGTGTGTAGAACTTTTTGTAGAA 57.120 29.630 0.00 0.00 0.00 2.10
2127 2719 8.732746 AGTGTGTAGAACTTTTTGTAGAATGT 57.267 30.769 0.00 0.00 0.00 2.71
2128 2720 9.174166 AGTGTGTAGAACTTTTTGTAGAATGTT 57.826 29.630 0.00 0.00 31.85 2.71
2129 2721 9.783256 GTGTGTAGAACTTTTTGTAGAATGTTT 57.217 29.630 0.00 0.00 30.06 2.83
2139 2731 8.865590 TTTTTGTAGAATGTTTACTCAAAGGC 57.134 30.769 0.00 0.00 0.00 4.35
2140 2732 7.575414 TTTGTAGAATGTTTACTCAAAGGCA 57.425 32.000 0.00 0.00 0.00 4.75
2142 2734 5.472137 TGTAGAATGTTTACTCAAAGGCACC 59.528 40.000 0.00 0.00 0.00 5.01
2143 2735 3.502211 AGAATGTTTACTCAAAGGCACCG 59.498 43.478 0.00 0.00 0.00 4.94
2144 2736 2.335316 TGTTTACTCAAAGGCACCGT 57.665 45.000 0.00 0.00 0.00 4.83
2145 2737 1.944024 TGTTTACTCAAAGGCACCGTG 59.056 47.619 0.00 0.00 0.00 4.94
2146 2738 1.944709 GTTTACTCAAAGGCACCGTGT 59.055 47.619 0.00 0.00 0.00 4.49
2147 2739 2.335316 TTACTCAAAGGCACCGTGTT 57.665 45.000 0.00 0.00 0.00 3.32
2148 2740 3.472283 TTACTCAAAGGCACCGTGTTA 57.528 42.857 0.00 0.00 0.00 2.41
2150 2742 1.944709 ACTCAAAGGCACCGTGTTAAC 59.055 47.619 0.00 0.00 0.00 2.01
2151 2743 1.265905 CTCAAAGGCACCGTGTTAACC 59.734 52.381 2.48 0.00 0.00 2.85
2155 2747 0.034896 AGGCACCGTGTTAACCTGAG 59.965 55.000 2.48 0.00 0.00 3.35
2156 2748 0.034337 GGCACCGTGTTAACCTGAGA 59.966 55.000 2.48 0.00 0.00 3.27
2157 2749 1.541670 GGCACCGTGTTAACCTGAGAA 60.542 52.381 2.48 0.00 0.00 2.87
2158 2750 1.798813 GCACCGTGTTAACCTGAGAAG 59.201 52.381 2.48 0.00 0.00 2.85
2159 2751 1.798813 CACCGTGTTAACCTGAGAAGC 59.201 52.381 2.48 0.00 0.00 3.86
2160 2752 1.414919 ACCGTGTTAACCTGAGAAGCA 59.585 47.619 2.48 0.00 0.00 3.91
2162 2754 1.461127 CGTGTTAACCTGAGAAGCAGC 59.539 52.381 2.48 0.00 43.50 5.25
2163 2755 2.494059 GTGTTAACCTGAGAAGCAGCA 58.506 47.619 2.48 0.00 43.50 4.41
2165 2757 2.158827 TGTTAACCTGAGAAGCAGCACA 60.159 45.455 2.48 0.00 43.50 4.57
2187 2933 7.230222 CACAGTCTGTAAAAATGACGATCTTC 58.770 38.462 4.85 0.00 36.01 2.87
2236 2982 3.892284 TGGGACACGTATATGCCAAATT 58.108 40.909 4.66 0.00 0.00 1.82
2245 2991 4.265085 CGTATATGCCAAATTGTGTTGCAC 59.735 41.667 0.00 0.00 34.56 4.57
2255 3001 0.383590 TGTGTTGCACAATGGGAACG 59.616 50.000 0.00 0.00 41.69 3.95
2256 3002 0.665835 GTGTTGCACAATGGGAACGA 59.334 50.000 0.00 0.00 41.40 3.85
2281 3053 3.858503 GCAAAGCATCAGAAACCTTCCAC 60.859 47.826 0.00 0.00 0.00 4.02
2283 3055 2.787994 AGCATCAGAAACCTTCCACAG 58.212 47.619 0.00 0.00 0.00 3.66
2318 3146 6.156949 TGAATAGAGGATACAAGTTTGCTCCT 59.843 38.462 13.44 13.44 42.79 3.69
2324 3152 7.988028 AGAGGATACAAGTTTGCTCCTAAATAC 59.012 37.037 13.51 4.94 41.21 1.89
2325 3153 7.862675 AGGATACAAGTTTGCTCCTAAATACT 58.137 34.615 12.42 0.00 40.09 2.12
2326 3154 7.988028 AGGATACAAGTTTGCTCCTAAATACTC 59.012 37.037 12.42 0.00 40.09 2.59
2327 3155 7.988028 GGATACAAGTTTGCTCCTAAATACTCT 59.012 37.037 6.76 0.00 33.10 3.24
2362 3196 7.224753 CCACATTGATAACGTTAGCAAGACTAT 59.775 37.037 33.88 20.09 41.62 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.702048 ACTGCCGGGCGTACACAT 61.702 61.111 15.40 0.00 0.00 3.21
4 5 0.741927 AAATACACTGCCGGGCGTAC 60.742 55.000 15.40 0.00 0.00 3.67
7 8 2.469516 GGAAATACACTGCCGGGCG 61.470 63.158 15.40 11.70 0.00 6.13
8 9 0.179468 TAGGAAATACACTGCCGGGC 59.821 55.000 13.32 13.32 0.00 6.13
9 10 1.485066 AGTAGGAAATACACTGCCGGG 59.515 52.381 2.18 0.00 36.79 5.73
10 11 2.981859 AGTAGGAAATACACTGCCGG 57.018 50.000 0.00 0.00 36.79 6.13
12 13 4.092968 CGTCAAAGTAGGAAATACACTGCC 59.907 45.833 0.00 0.00 36.79 4.85
13 14 4.435651 GCGTCAAAGTAGGAAATACACTGC 60.436 45.833 0.00 0.00 36.79 4.40
14 15 4.092968 GGCGTCAAAGTAGGAAATACACTG 59.907 45.833 0.00 0.00 36.79 3.66
15 16 4.251268 GGCGTCAAAGTAGGAAATACACT 58.749 43.478 0.00 0.00 36.79 3.55
16 17 3.061697 CGGCGTCAAAGTAGGAAATACAC 59.938 47.826 0.00 0.00 36.79 2.90
17 18 3.255725 CGGCGTCAAAGTAGGAAATACA 58.744 45.455 0.00 0.00 36.79 2.29
18 19 2.606272 CCGGCGTCAAAGTAGGAAATAC 59.394 50.000 6.01 0.00 34.30 1.89
20 21 1.734163 CCGGCGTCAAAGTAGGAAAT 58.266 50.000 6.01 0.00 0.00 2.17
21 22 0.952010 GCCGGCGTCAAAGTAGGAAA 60.952 55.000 12.58 0.00 0.00 3.13
22 23 1.375013 GCCGGCGTCAAAGTAGGAA 60.375 57.895 12.58 0.00 0.00 3.36
23 24 2.263540 GCCGGCGTCAAAGTAGGA 59.736 61.111 12.58 0.00 0.00 2.94
24 25 2.818274 GGCCGGCGTCAAAGTAGG 60.818 66.667 22.54 0.00 0.00 3.18
25 26 3.186047 CGGCCGGCGTCAAAGTAG 61.186 66.667 22.54 0.00 0.00 2.57
26 27 3.993584 ACGGCCGGCGTCAAAGTA 61.994 61.111 31.76 0.00 0.00 2.24
29 30 4.690719 ATCACGGCCGGCGTCAAA 62.691 61.111 31.76 6.61 0.00 2.69
30 31 4.690719 AATCACGGCCGGCGTCAA 62.691 61.111 31.76 9.25 0.00 3.18
31 32 4.690719 AAATCACGGCCGGCGTCA 62.691 61.111 31.76 4.91 0.00 4.35
32 33 4.160635 CAAATCACGGCCGGCGTC 62.161 66.667 31.76 6.47 0.00 5.19
33 34 4.690719 TCAAATCACGGCCGGCGT 62.691 61.111 31.76 19.06 0.00 5.68
34 35 4.160635 GTCAAATCACGGCCGGCG 62.161 66.667 31.76 20.52 0.00 6.46
35 36 3.810896 GGTCAAATCACGGCCGGC 61.811 66.667 31.76 21.18 0.00 6.13
36 37 3.131478 GGGTCAAATCACGGCCGG 61.131 66.667 31.76 18.67 0.00 6.13
37 38 3.496131 CGGGTCAAATCACGGCCG 61.496 66.667 26.86 26.86 0.00 6.13
38 39 2.046700 TCGGGTCAAATCACGGCC 60.047 61.111 0.00 0.00 34.76 6.13
39 40 1.375523 ACTCGGGTCAAATCACGGC 60.376 57.895 0.00 0.00 34.76 5.68
40 41 1.019278 CCACTCGGGTCAAATCACGG 61.019 60.000 0.00 0.00 34.76 4.94
41 42 2.456000 CCACTCGGGTCAAATCACG 58.544 57.895 0.00 0.00 35.37 4.35
51 52 3.939066 AGAAAGTAATTGACCACTCGGG 58.061 45.455 0.00 0.00 44.81 5.14
52 53 4.378459 GCAAGAAAGTAATTGACCACTCGG 60.378 45.833 0.00 0.00 38.77 4.63
53 54 4.452455 AGCAAGAAAGTAATTGACCACTCG 59.548 41.667 0.00 0.00 0.00 4.18
54 55 5.948992 AGCAAGAAAGTAATTGACCACTC 57.051 39.130 0.00 0.00 0.00 3.51
55 56 7.665559 TCAATAGCAAGAAAGTAATTGACCACT 59.334 33.333 0.00 0.00 30.59 4.00
56 57 7.816640 TCAATAGCAAGAAAGTAATTGACCAC 58.183 34.615 0.00 0.00 30.59 4.16
57 58 7.665559 ACTCAATAGCAAGAAAGTAATTGACCA 59.334 33.333 0.00 0.00 31.87 4.02
58 59 8.045176 ACTCAATAGCAAGAAAGTAATTGACC 57.955 34.615 0.00 0.00 31.87 4.02
59 60 9.548208 GAACTCAATAGCAAGAAAGTAATTGAC 57.452 33.333 0.00 0.00 31.87 3.18
60 61 9.283768 TGAACTCAATAGCAAGAAAGTAATTGA 57.716 29.630 0.00 0.00 33.59 2.57
63 64 9.678260 AGATGAACTCAATAGCAAGAAAGTAAT 57.322 29.630 0.00 0.00 0.00 1.89
64 65 9.507329 AAGATGAACTCAATAGCAAGAAAGTAA 57.493 29.630 0.00 0.00 0.00 2.24
65 66 9.507329 AAAGATGAACTCAATAGCAAGAAAGTA 57.493 29.630 0.00 0.00 0.00 2.24
66 67 7.992754 AAGATGAACTCAATAGCAAGAAAGT 57.007 32.000 0.00 0.00 0.00 2.66
67 68 9.688592 AAAAAGATGAACTCAATAGCAAGAAAG 57.311 29.630 0.00 0.00 0.00 2.62
68 69 9.467258 CAAAAAGATGAACTCAATAGCAAGAAA 57.533 29.630 0.00 0.00 0.00 2.52
69 70 8.084073 CCAAAAAGATGAACTCAATAGCAAGAA 58.916 33.333 0.00 0.00 0.00 2.52
70 71 7.596494 CCAAAAAGATGAACTCAATAGCAAGA 58.404 34.615 0.00 0.00 0.00 3.02
71 72 6.309737 GCCAAAAAGATGAACTCAATAGCAAG 59.690 38.462 0.00 0.00 0.00 4.01
72 73 6.158598 GCCAAAAAGATGAACTCAATAGCAA 58.841 36.000 0.00 0.00 0.00 3.91
73 74 5.243507 TGCCAAAAAGATGAACTCAATAGCA 59.756 36.000 0.00 0.00 0.00 3.49
74 75 5.713025 TGCCAAAAAGATGAACTCAATAGC 58.287 37.500 0.00 0.00 0.00 2.97
75 76 7.816031 ACATTGCCAAAAAGATGAACTCAATAG 59.184 33.333 0.00 0.00 0.00 1.73
76 77 7.669427 ACATTGCCAAAAAGATGAACTCAATA 58.331 30.769 0.00 0.00 0.00 1.90
77 78 6.527423 ACATTGCCAAAAAGATGAACTCAAT 58.473 32.000 0.00 0.00 0.00 2.57
78 79 5.916318 ACATTGCCAAAAAGATGAACTCAA 58.084 33.333 0.00 0.00 0.00 3.02
79 80 5.534207 ACATTGCCAAAAAGATGAACTCA 57.466 34.783 0.00 0.00 0.00 3.41
80 81 9.076596 GTATTACATTGCCAAAAAGATGAACTC 57.923 33.333 0.00 0.00 0.00 3.01
81 82 8.034804 GGTATTACATTGCCAAAAAGATGAACT 58.965 33.333 0.00 0.00 0.00 3.01
82 83 7.277760 GGGTATTACATTGCCAAAAAGATGAAC 59.722 37.037 0.00 0.00 0.00 3.18
83 84 7.327214 GGGTATTACATTGCCAAAAAGATGAA 58.673 34.615 0.00 0.00 0.00 2.57
84 85 6.405286 CGGGTATTACATTGCCAAAAAGATGA 60.405 38.462 0.00 0.00 0.00 2.92
85 86 5.748152 CGGGTATTACATTGCCAAAAAGATG 59.252 40.000 0.00 0.00 0.00 2.90
86 87 5.420739 ACGGGTATTACATTGCCAAAAAGAT 59.579 36.000 0.00 0.00 0.00 2.40
87 88 4.767928 ACGGGTATTACATTGCCAAAAAGA 59.232 37.500 0.00 0.00 0.00 2.52
88 89 5.066968 ACGGGTATTACATTGCCAAAAAG 57.933 39.130 0.00 0.00 0.00 2.27
89 90 5.470047 AACGGGTATTACATTGCCAAAAA 57.530 34.783 0.00 0.00 0.00 1.94
90 91 4.379603 CGAACGGGTATTACATTGCCAAAA 60.380 41.667 0.00 0.00 0.00 2.44
91 92 3.127203 CGAACGGGTATTACATTGCCAAA 59.873 43.478 0.00 0.00 0.00 3.28
92 93 2.678836 CGAACGGGTATTACATTGCCAA 59.321 45.455 0.00 0.00 0.00 4.52
93 94 2.281517 CGAACGGGTATTACATTGCCA 58.718 47.619 0.00 0.00 0.00 4.92
94 95 2.282407 ACGAACGGGTATTACATTGCC 58.718 47.619 0.00 0.00 0.00 4.52
95 96 2.286025 GGACGAACGGGTATTACATTGC 59.714 50.000 0.00 0.00 0.00 3.56
96 97 3.523547 TGGACGAACGGGTATTACATTG 58.476 45.455 0.00 0.00 0.00 2.82
97 98 3.891422 TGGACGAACGGGTATTACATT 57.109 42.857 0.00 0.00 0.00 2.71
98 99 3.196254 ACTTGGACGAACGGGTATTACAT 59.804 43.478 0.00 0.00 0.00 2.29
99 100 2.562298 ACTTGGACGAACGGGTATTACA 59.438 45.455 0.00 0.00 0.00 2.41
100 101 3.236632 ACTTGGACGAACGGGTATTAC 57.763 47.619 0.00 0.00 0.00 1.89
101 102 6.265196 ACATATACTTGGACGAACGGGTATTA 59.735 38.462 0.00 0.00 0.00 0.98
102 103 5.069516 ACATATACTTGGACGAACGGGTATT 59.930 40.000 0.00 0.00 0.00 1.89
103 104 4.586001 ACATATACTTGGACGAACGGGTAT 59.414 41.667 0.00 0.00 0.00 2.73
104 105 3.953612 ACATATACTTGGACGAACGGGTA 59.046 43.478 0.00 0.00 0.00 3.69
105 106 2.762327 ACATATACTTGGACGAACGGGT 59.238 45.455 0.00 0.00 0.00 5.28
106 107 3.120792 CACATATACTTGGACGAACGGG 58.879 50.000 0.00 0.00 0.00 5.28
107 108 3.777478 ACACATATACTTGGACGAACGG 58.223 45.455 0.00 0.00 0.00 4.44
108 109 6.308524 TGTTAACACATATACTTGGACGAACG 59.691 38.462 3.59 0.00 0.00 3.95
109 110 7.585286 TGTTAACACATATACTTGGACGAAC 57.415 36.000 3.59 0.00 0.00 3.95
110 111 7.656542 TGTTGTTAACACATATACTTGGACGAA 59.343 33.333 8.07 0.00 36.25 3.85
111 112 7.153315 TGTTGTTAACACATATACTTGGACGA 58.847 34.615 8.07 0.00 36.25 4.20
112 113 7.354025 TGTTGTTAACACATATACTTGGACG 57.646 36.000 8.07 0.00 36.25 4.79
113 114 7.241376 GCTGTTGTTAACACATATACTTGGAC 58.759 38.462 8.07 0.00 36.25 4.02
114 115 6.373216 GGCTGTTGTTAACACATATACTTGGA 59.627 38.462 8.07 0.00 36.25 3.53
115 116 6.551736 GGCTGTTGTTAACACATATACTTGG 58.448 40.000 8.07 0.65 36.25 3.61
116 117 6.091577 TCGGCTGTTGTTAACACATATACTTG 59.908 38.462 8.07 2.85 36.25 3.16
117 118 6.167685 TCGGCTGTTGTTAACACATATACTT 58.832 36.000 8.07 0.00 36.25 2.24
118 119 5.726397 TCGGCTGTTGTTAACACATATACT 58.274 37.500 8.07 0.00 36.25 2.12
119 120 6.411630 TTCGGCTGTTGTTAACACATATAC 57.588 37.500 8.07 4.06 36.25 1.47
120 121 6.402766 GCTTTCGGCTGTTGTTAACACATATA 60.403 38.462 8.07 0.00 36.25 0.86
121 122 5.619086 GCTTTCGGCTGTTGTTAACACATAT 60.619 40.000 8.07 0.00 36.25 1.78
122 123 4.319911 GCTTTCGGCTGTTGTTAACACATA 60.320 41.667 8.07 0.00 36.25 2.29
123 124 3.550030 GCTTTCGGCTGTTGTTAACACAT 60.550 43.478 8.07 0.00 36.25 3.21
124 125 2.223386 GCTTTCGGCTGTTGTTAACACA 60.223 45.455 8.07 8.98 36.25 3.72
125 126 2.381589 GCTTTCGGCTGTTGTTAACAC 58.618 47.619 8.07 4.61 36.25 3.32
126 127 1.335496 GGCTTTCGGCTGTTGTTAACA 59.665 47.619 3.59 3.59 41.46 2.41
127 128 1.335597 GGGCTTTCGGCTGTTGTTAAC 60.336 52.381 0.00 0.00 41.46 2.01
128 129 0.955905 GGGCTTTCGGCTGTTGTTAA 59.044 50.000 0.00 0.00 41.46 2.01
129 130 0.891904 GGGGCTTTCGGCTGTTGTTA 60.892 55.000 0.00 0.00 41.46 2.41
130 131 2.200337 GGGGCTTTCGGCTGTTGTT 61.200 57.895 0.00 0.00 41.46 2.83
131 132 2.597510 GGGGCTTTCGGCTGTTGT 60.598 61.111 0.00 0.00 41.46 3.32
132 133 3.737172 CGGGGCTTTCGGCTGTTG 61.737 66.667 0.00 0.00 41.46 3.33
133 134 1.906105 TATCGGGGCTTTCGGCTGTT 61.906 55.000 0.00 0.00 41.46 3.16
134 135 1.906105 TTATCGGGGCTTTCGGCTGT 61.906 55.000 0.00 0.00 41.46 4.40
135 136 0.535102 ATTATCGGGGCTTTCGGCTG 60.535 55.000 0.00 0.00 41.46 4.85
136 137 0.535102 CATTATCGGGGCTTTCGGCT 60.535 55.000 0.00 0.00 41.46 5.52
137 138 0.534203 TCATTATCGGGGCTTTCGGC 60.534 55.000 0.00 0.00 40.90 5.54
138 139 2.185004 ATCATTATCGGGGCTTTCGG 57.815 50.000 0.00 0.00 0.00 4.30
139 140 2.484264 GGAATCATTATCGGGGCTTTCG 59.516 50.000 0.00 0.00 0.00 3.46
140 141 3.486383 TGGAATCATTATCGGGGCTTTC 58.514 45.455 0.00 0.00 0.00 2.62
141 142 3.593442 TGGAATCATTATCGGGGCTTT 57.407 42.857 0.00 0.00 0.00 3.51
142 143 3.222603 GTTGGAATCATTATCGGGGCTT 58.777 45.455 0.00 0.00 0.00 4.35
143 144 2.174639 TGTTGGAATCATTATCGGGGCT 59.825 45.455 0.00 0.00 0.00 5.19
144 145 2.582052 TGTTGGAATCATTATCGGGGC 58.418 47.619 0.00 0.00 0.00 5.80
145 146 5.789643 AATTGTTGGAATCATTATCGGGG 57.210 39.130 0.00 0.00 0.00 5.73
146 147 5.463061 GCAAATTGTTGGAATCATTATCGGG 59.537 40.000 0.00 0.00 35.10 5.14
147 148 6.019640 GTGCAAATTGTTGGAATCATTATCGG 60.020 38.462 0.00 0.00 36.77 4.18
148 149 6.753279 AGTGCAAATTGTTGGAATCATTATCG 59.247 34.615 0.00 0.00 36.77 2.92
149 150 9.241317 CTAGTGCAAATTGTTGGAATCATTATC 57.759 33.333 0.00 0.00 36.77 1.75
150 151 8.752187 ACTAGTGCAAATTGTTGGAATCATTAT 58.248 29.630 0.00 0.00 36.77 1.28
151 152 8.121305 ACTAGTGCAAATTGTTGGAATCATTA 57.879 30.769 0.00 0.00 36.77 1.90
152 153 6.996509 ACTAGTGCAAATTGTTGGAATCATT 58.003 32.000 0.00 0.00 36.77 2.57
153 154 6.594788 ACTAGTGCAAATTGTTGGAATCAT 57.405 33.333 0.00 0.00 36.77 2.45
154 155 6.488344 TGTACTAGTGCAAATTGTTGGAATCA 59.512 34.615 11.58 0.00 36.77 2.57
155 156 6.908825 TGTACTAGTGCAAATTGTTGGAATC 58.091 36.000 11.58 0.00 36.77 2.52
156 157 6.892658 TGTACTAGTGCAAATTGTTGGAAT 57.107 33.333 11.58 0.00 36.77 3.01
157 158 6.701145 TTGTACTAGTGCAAATTGTTGGAA 57.299 33.333 22.12 0.00 36.77 3.53
158 159 6.701145 TTTGTACTAGTGCAAATTGTTGGA 57.299 33.333 28.46 10.01 39.58 3.53
166 167 9.991906 ACTCTTAGTAATTTGTACTAGTGCAAA 57.008 29.630 32.24 32.24 46.16 3.68
184 185 8.258708 CCTGCCAACTAATAAACTACTCTTAGT 58.741 37.037 0.00 0.00 40.55 2.24
185 186 8.475639 TCCTGCCAACTAATAAACTACTCTTAG 58.524 37.037 0.00 0.00 0.00 2.18
186 187 8.370266 TCCTGCCAACTAATAAACTACTCTTA 57.630 34.615 0.00 0.00 0.00 2.10
187 188 7.253905 TCCTGCCAACTAATAAACTACTCTT 57.746 36.000 0.00 0.00 0.00 2.85
188 189 6.869206 TCCTGCCAACTAATAAACTACTCT 57.131 37.500 0.00 0.00 0.00 3.24
189 190 7.278203 GTCTTCCTGCCAACTAATAAACTACTC 59.722 40.741 0.00 0.00 0.00 2.59
190 191 7.038231 AGTCTTCCTGCCAACTAATAAACTACT 60.038 37.037 0.00 0.00 0.00 2.57
191 192 7.104290 AGTCTTCCTGCCAACTAATAAACTAC 58.896 38.462 0.00 0.00 0.00 2.73
192 193 7.253905 AGTCTTCCTGCCAACTAATAAACTA 57.746 36.000 0.00 0.00 0.00 2.24
193 194 6.128138 AGTCTTCCTGCCAACTAATAAACT 57.872 37.500 0.00 0.00 0.00 2.66
194 195 7.104290 ACTAGTCTTCCTGCCAACTAATAAAC 58.896 38.462 0.00 0.00 0.00 2.01
195 196 7.253905 ACTAGTCTTCCTGCCAACTAATAAA 57.746 36.000 0.00 0.00 0.00 1.40
196 197 6.869206 ACTAGTCTTCCTGCCAACTAATAA 57.131 37.500 0.00 0.00 0.00 1.40
197 198 6.869206 AACTAGTCTTCCTGCCAACTAATA 57.131 37.500 0.00 0.00 0.00 0.98
198 199 5.763876 AACTAGTCTTCCTGCCAACTAAT 57.236 39.130 0.00 0.00 0.00 1.73
281 285 3.070018 CAACTAGTTCTCCTGCCAACTG 58.930 50.000 4.77 0.00 34.60 3.16
293 297 3.057019 TCATCGTGTGTGCAACTAGTTC 58.943 45.455 4.77 1.77 38.04 3.01
294 298 3.106242 TCATCGTGTGTGCAACTAGTT 57.894 42.857 1.12 1.12 38.04 2.24
308 312 2.622942 ACAAGCCAACAAACATCATCGT 59.377 40.909 0.00 0.00 0.00 3.73
310 314 6.158598 ACATTACAAGCCAACAAACATCATC 58.841 36.000 0.00 0.00 0.00 2.92
311 315 6.100404 ACATTACAAGCCAACAAACATCAT 57.900 33.333 0.00 0.00 0.00 2.45
312 316 5.528043 ACATTACAAGCCAACAAACATCA 57.472 34.783 0.00 0.00 0.00 3.07
313 317 6.677913 ACTACATTACAAGCCAACAAACATC 58.322 36.000 0.00 0.00 0.00 3.06
315 319 5.825679 AGACTACATTACAAGCCAACAAACA 59.174 36.000 0.00 0.00 0.00 2.83
316 320 6.313744 AGACTACATTACAAGCCAACAAAC 57.686 37.500 0.00 0.00 0.00 2.93
319 408 6.354794 ACTAGACTACATTACAAGCCAACA 57.645 37.500 0.00 0.00 0.00 3.33
353 482 6.591001 AGTTTTCCTGCCAACAAAACATTAT 58.409 32.000 11.47 0.00 40.82 1.28
355 484 4.842574 AGTTTTCCTGCCAACAAAACATT 58.157 34.783 11.47 0.00 40.82 2.71
423 553 6.183360 TGCCAACTAAACATAAATGTGTGTGT 60.183 34.615 0.00 0.00 41.61 3.72
434 564 4.634012 AGTGTCCTGCCAACTAAACATA 57.366 40.909 0.00 0.00 0.00 2.29
473 603 1.444042 CATTGCCGCGTCAATTGCA 60.444 52.632 13.40 7.03 34.68 4.08
481 611 1.447838 CTGGACTACATTGCCGCGT 60.448 57.895 4.92 0.00 0.00 6.01
483 613 0.447801 CAACTGGACTACATTGCCGC 59.552 55.000 0.00 0.00 0.00 6.53
497 627 8.746922 ACTAAATATCAATGTTTGTGCAACTG 57.253 30.769 0.00 0.00 38.04 3.16
502 632 8.741101 TGTCAACTAAATATCAATGTTTGTGC 57.259 30.769 0.00 0.00 0.00 4.57
522 652 9.719355 ACATATGTGTGTAACTAATTCTGTCAA 57.281 29.630 7.78 0.00 37.14 3.18
525 655 9.719355 TGAACATATGTGTGTAACTAATTCTGT 57.281 29.630 9.63 0.00 38.92 3.41
531 661 7.934665 ACCAACTGAACATATGTGTGTAACTAA 59.065 33.333 9.63 0.00 38.92 2.24
680 1097 3.879295 GCATATGTGTGTGCCAATAGTCT 59.121 43.478 4.29 0.00 36.56 3.24
727 1225 3.409851 AGCATCAATATGTGTGCAACG 57.590 42.857 0.00 0.00 36.98 4.10
746 1244 3.378427 GCCAAATAGTCCTGCCAACTAAG 59.622 47.826 0.00 0.00 33.19 2.18
797 1300 3.809279 TCAATGTGTGTGCAACTAGACTG 59.191 43.478 0.00 0.00 38.04 3.51
888 1393 2.512485 TCACCGTTAAAACTCTCGCA 57.488 45.000 0.00 0.00 0.00 5.10
894 1399 6.488683 TCAGATCCATTTTCACCGTTAAAACT 59.511 34.615 0.00 0.00 0.00 2.66
980 1485 6.854091 ATATTCCTCCTATTCGTCCCTTAC 57.146 41.667 0.00 0.00 0.00 2.34
994 1499 2.162408 GCCGCTGCATTAATATTCCTCC 59.838 50.000 0.00 0.00 37.47 4.30
1052 1567 8.132362 AGAAAAACACTGTTAATTAATCACGCA 58.868 29.630 0.31 0.00 0.00 5.24
1077 1593 5.121454 GCGATTAATCATTCCTCTGGCTAAG 59.879 44.000 15.57 0.00 0.00 2.18
1085 1601 4.518217 CGTGTTGCGATTAATCATTCCTC 58.482 43.478 15.57 1.83 44.77 3.71
1194 1735 4.046462 TCGATCCAATTCGAATCGGTTAC 58.954 43.478 14.67 6.88 44.56 2.50
1208 1749 2.817258 GTGAAATTGGGTGTCGATCCAA 59.183 45.455 16.42 16.42 46.84 3.53
1215 1756 1.256812 CAGGGGTGAAATTGGGTGTC 58.743 55.000 0.00 0.00 0.00 3.67
1228 1769 1.380302 GGACATCTGTTGCAGGGGT 59.620 57.895 0.00 0.00 31.51 4.95
1231 1772 0.679002 CAGGGGACATCTGTTGCAGG 60.679 60.000 0.00 0.00 31.51 4.85
1252 1794 3.450904 TGAGCTACCTACCCAATCTGTT 58.549 45.455 0.00 0.00 0.00 3.16
1260 1802 0.830648 TGTGCATGAGCTACCTACCC 59.169 55.000 0.00 0.00 42.74 3.69
1295 1837 0.816018 TAAGAGAGAGCGAGGAGGCG 60.816 60.000 0.00 0.00 38.18 5.52
1303 1845 3.914312 TGTTGGAGTTTAAGAGAGAGCG 58.086 45.455 0.00 0.00 0.00 5.03
1364 1907 3.052455 TCAAGCAAGCCGTCTTCATTA 57.948 42.857 0.00 0.00 0.00 1.90
1365 1908 1.896220 TCAAGCAAGCCGTCTTCATT 58.104 45.000 0.00 0.00 0.00 2.57
1392 1935 4.595538 ACGGCGAGCGAAACCACA 62.596 61.111 16.62 0.00 0.00 4.17
1497 2040 2.089201 CTGATGATGACCAGCTTTGCA 58.911 47.619 0.00 0.00 31.20 4.08
1498 2041 1.404391 CCTGATGATGACCAGCTTTGC 59.596 52.381 0.00 0.00 31.20 3.68
1584 2127 0.179100 CGCAGACAATCATCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
1594 2137 0.957395 CACCTCTTGCCGCAGACAAT 60.957 55.000 0.00 0.00 0.00 2.71
1596 2139 2.031012 CACCTCTTGCCGCAGACA 59.969 61.111 0.00 0.00 0.00 3.41
1686 2229 2.360475 GGGACTCAGCAGGTTGGC 60.360 66.667 0.00 0.00 0.00 4.52
1697 2240 1.400737 ATACGCAGGTACAGGGACTC 58.599 55.000 8.30 0.00 34.60 3.36
1705 2248 3.824414 ACAAGCAAAATACGCAGGTAC 57.176 42.857 0.00 0.00 0.00 3.34
1706 2249 4.069304 AGAACAAGCAAAATACGCAGGTA 58.931 39.130 0.00 0.00 0.00 3.08
1707 2250 2.884639 AGAACAAGCAAAATACGCAGGT 59.115 40.909 0.00 0.00 0.00 4.00
1708 2251 3.559238 AGAACAAGCAAAATACGCAGG 57.441 42.857 0.00 0.00 0.00 4.85
1709 2252 4.787598 AGAAGAACAAGCAAAATACGCAG 58.212 39.130 0.00 0.00 0.00 5.18
1710 2253 4.829064 AGAAGAACAAGCAAAATACGCA 57.171 36.364 0.00 0.00 0.00 5.24
1711 2254 4.617223 GGAAGAAGAACAAGCAAAATACGC 59.383 41.667 0.00 0.00 0.00 4.42
1712 2255 6.002062 AGGAAGAAGAACAAGCAAAATACG 57.998 37.500 0.00 0.00 0.00 3.06
1713 2256 7.208225 AGAGGAAGAAGAACAAGCAAAATAC 57.792 36.000 0.00 0.00 0.00 1.89
1714 2257 7.721399 AGAAGAGGAAGAAGAACAAGCAAAATA 59.279 33.333 0.00 0.00 0.00 1.40
1720 2263 4.384940 ACAGAAGAGGAAGAAGAACAAGC 58.615 43.478 0.00 0.00 0.00 4.01
1724 2267 7.171630 TGGTATACAGAAGAGGAAGAAGAAC 57.828 40.000 5.01 0.00 0.00 3.01
1725 2268 7.979786 ATGGTATACAGAAGAGGAAGAAGAA 57.020 36.000 5.01 0.00 0.00 2.52
1736 2279 8.072567 GCATGCTAGAAAAATGGTATACAGAAG 58.927 37.037 11.37 0.00 0.00 2.85
1739 2282 6.262944 TGGCATGCTAGAAAAATGGTATACAG 59.737 38.462 18.92 0.00 0.00 2.74
1741 2284 6.438763 GTGGCATGCTAGAAAAATGGTATAC 58.561 40.000 18.92 0.00 0.00 1.47
1743 2286 4.342092 GGTGGCATGCTAGAAAAATGGTAT 59.658 41.667 18.92 0.00 0.00 2.73
1745 2288 2.497273 GGTGGCATGCTAGAAAAATGGT 59.503 45.455 18.92 0.00 0.00 3.55
1746 2289 2.480073 CGGTGGCATGCTAGAAAAATGG 60.480 50.000 18.92 0.00 0.00 3.16
1748 2291 2.722094 TCGGTGGCATGCTAGAAAAAT 58.278 42.857 18.92 0.00 0.00 1.82
1749 2292 2.192664 TCGGTGGCATGCTAGAAAAA 57.807 45.000 18.92 0.00 0.00 1.94
1751 2294 2.418368 AATCGGTGGCATGCTAGAAA 57.582 45.000 18.92 0.00 0.00 2.52
1752 2295 2.418368 AAATCGGTGGCATGCTAGAA 57.582 45.000 18.92 0.00 0.00 2.10
1753 2296 2.016318 CAAAATCGGTGGCATGCTAGA 58.984 47.619 18.92 11.98 0.00 2.43
1755 2298 1.102154 CCAAAATCGGTGGCATGCTA 58.898 50.000 18.92 9.16 0.00 3.49
1757 2300 0.179129 CTCCAAAATCGGTGGCATGC 60.179 55.000 9.90 9.90 35.99 4.06
1758 2301 0.179129 GCTCCAAAATCGGTGGCATG 60.179 55.000 0.00 0.00 35.99 4.06
1759 2302 1.322538 GGCTCCAAAATCGGTGGCAT 61.323 55.000 0.00 0.00 42.82 4.40
1760 2303 1.976474 GGCTCCAAAATCGGTGGCA 60.976 57.895 0.00 0.00 42.82 4.92
1761 2304 1.678970 AGGCTCCAAAATCGGTGGC 60.679 57.895 0.00 0.00 43.42 5.01
1762 2305 0.609131 ACAGGCTCCAAAATCGGTGG 60.609 55.000 0.00 0.00 37.51 4.61
1763 2306 0.523072 CACAGGCTCCAAAATCGGTG 59.477 55.000 0.00 0.00 0.00 4.94
1765 2308 1.508088 GCACAGGCTCCAAAATCGG 59.492 57.895 0.00 0.00 36.96 4.18
1766 2309 0.962356 AGGCACAGGCTCCAAAATCG 60.962 55.000 0.00 0.00 40.87 3.34
1767 2310 1.203287 GAAGGCACAGGCTCCAAAATC 59.797 52.381 0.00 0.00 37.50 2.17
1803 2372 4.064388 AGCATTAAAACCTGCGCATTTTT 58.936 34.783 22.59 23.80 43.17 1.94
1808 2377 5.766150 AATATAGCATTAAAACCTGCGCA 57.234 34.783 10.98 10.98 43.17 6.09
1841 2410 8.755696 TTTGCATCTGTATTACATGGTTTTTC 57.244 30.769 0.00 0.00 0.00 2.29
1944 2514 6.489603 AGTACCATGGATAATTTGTCACCAA 58.510 36.000 21.47 0.00 34.28 3.67
1945 2515 6.073447 AGTACCATGGATAATTTGTCACCA 57.927 37.500 21.47 0.00 35.09 4.17
1947 2517 7.826690 ACAAAGTACCATGGATAATTTGTCAC 58.173 34.615 27.95 11.06 43.55 3.67
1967 2537 9.591792 TGACAGTTCAGATGATATCTTACAAAG 57.408 33.333 3.98 0.00 37.58 2.77
1971 2541 9.979578 AGAATGACAGTTCAGATGATATCTTAC 57.020 33.333 3.98 0.00 37.58 2.34
1980 2550 8.189709 TCGAATAAAGAATGACAGTTCAGATG 57.810 34.615 0.00 0.00 34.35 2.90
1983 2553 7.427606 GCAATCGAATAAAGAATGACAGTTCAG 59.572 37.037 0.00 0.00 34.35 3.02
1984 2554 7.094848 TGCAATCGAATAAAGAATGACAGTTCA 60.095 33.333 0.00 0.00 35.73 3.18
1985 2555 7.217070 GTGCAATCGAATAAAGAATGACAGTTC 59.783 37.037 0.00 0.00 0.00 3.01
1986 2556 7.023575 GTGCAATCGAATAAAGAATGACAGTT 58.976 34.615 0.00 0.00 0.00 3.16
1988 2558 5.967674 GGTGCAATCGAATAAAGAATGACAG 59.032 40.000 0.00 0.00 0.00 3.51
2102 2694 8.732746 ACATTCTACAAAAAGTTCTACACACT 57.267 30.769 0.00 0.00 0.00 3.55
2122 2714 3.252458 ACGGTGCCTTTGAGTAAACATTC 59.748 43.478 0.00 0.00 0.00 2.67
2123 2715 3.004315 CACGGTGCCTTTGAGTAAACATT 59.996 43.478 0.00 0.00 0.00 2.71
2124 2716 2.552315 CACGGTGCCTTTGAGTAAACAT 59.448 45.455 0.00 0.00 0.00 2.71
2125 2717 1.944024 CACGGTGCCTTTGAGTAAACA 59.056 47.619 0.00 0.00 0.00 2.83
2126 2718 1.944709 ACACGGTGCCTTTGAGTAAAC 59.055 47.619 8.30 0.00 0.00 2.01
2127 2719 2.335316 ACACGGTGCCTTTGAGTAAA 57.665 45.000 8.30 0.00 0.00 2.01
2128 2720 2.335316 AACACGGTGCCTTTGAGTAA 57.665 45.000 8.30 0.00 0.00 2.24
2129 2721 3.132925 GTTAACACGGTGCCTTTGAGTA 58.867 45.455 8.30 0.00 0.00 2.59
2130 2722 1.944709 GTTAACACGGTGCCTTTGAGT 59.055 47.619 8.30 0.00 0.00 3.41
2131 2723 1.265905 GGTTAACACGGTGCCTTTGAG 59.734 52.381 8.30 0.00 0.00 3.02
2132 2724 1.134037 AGGTTAACACGGTGCCTTTGA 60.134 47.619 8.30 0.00 0.00 2.69
2135 2727 0.470766 TCAGGTTAACACGGTGCCTT 59.529 50.000 8.30 0.00 0.00 4.35
2136 2728 0.034896 CTCAGGTTAACACGGTGCCT 59.965 55.000 8.30 3.54 0.00 4.75
2138 2730 1.798813 CTTCTCAGGTTAACACGGTGC 59.201 52.381 8.30 0.00 0.00 5.01
2139 2731 1.798813 GCTTCTCAGGTTAACACGGTG 59.201 52.381 8.10 6.58 0.00 4.94
2140 2732 1.414919 TGCTTCTCAGGTTAACACGGT 59.585 47.619 8.10 0.00 0.00 4.83
2142 2734 1.461127 GCTGCTTCTCAGGTTAACACG 59.539 52.381 8.10 0.00 43.06 4.49
2143 2735 2.224314 GTGCTGCTTCTCAGGTTAACAC 59.776 50.000 8.10 0.00 43.06 3.32
2144 2736 2.158827 TGTGCTGCTTCTCAGGTTAACA 60.159 45.455 8.10 0.00 43.06 2.41
2145 2737 2.481952 CTGTGCTGCTTCTCAGGTTAAC 59.518 50.000 0.00 0.00 43.06 2.01
2146 2738 2.104792 ACTGTGCTGCTTCTCAGGTTAA 59.895 45.455 0.00 0.00 43.06 2.01
2147 2739 1.694150 ACTGTGCTGCTTCTCAGGTTA 59.306 47.619 0.00 0.00 43.06 2.85
2148 2740 0.471617 ACTGTGCTGCTTCTCAGGTT 59.528 50.000 0.00 0.00 43.06 3.50
2150 2742 0.321021 AGACTGTGCTGCTTCTCAGG 59.679 55.000 0.00 0.00 43.06 3.86
2151 2743 1.270199 ACAGACTGTGCTGCTTCTCAG 60.270 52.381 7.47 7.11 45.62 3.35
2155 2747 4.552166 TTTTTACAGACTGTGCTGCTTC 57.448 40.909 18.58 0.00 39.51 3.86
2156 2748 4.580167 TCATTTTTACAGACTGTGCTGCTT 59.420 37.500 18.58 0.00 39.51 3.91
2157 2749 4.023707 GTCATTTTTACAGACTGTGCTGCT 60.024 41.667 18.58 0.00 39.51 4.24
2158 2750 4.222114 GTCATTTTTACAGACTGTGCTGC 58.778 43.478 18.58 0.00 39.51 5.25
2159 2751 4.211164 TCGTCATTTTTACAGACTGTGCTG 59.789 41.667 18.58 8.06 41.63 4.41
2160 2752 4.377021 TCGTCATTTTTACAGACTGTGCT 58.623 39.130 18.58 0.00 0.00 4.40
2162 2754 6.712241 AGATCGTCATTTTTACAGACTGTG 57.288 37.500 18.58 0.13 0.00 3.66
2163 2755 7.116948 CAGAAGATCGTCATTTTTACAGACTGT 59.883 37.037 13.68 13.68 0.00 3.55
2165 2757 7.378966 TCAGAAGATCGTCATTTTTACAGACT 58.621 34.615 11.35 0.00 0.00 3.24
2187 2933 2.005451 GTGTACCAGCAGAAGCATCAG 58.995 52.381 0.00 0.00 45.49 2.90
2245 2991 2.061028 GCTTTGCTTTCGTTCCCATTG 58.939 47.619 0.00 0.00 0.00 2.82
2247 2993 1.327303 TGCTTTGCTTTCGTTCCCAT 58.673 45.000 0.00 0.00 0.00 4.00
2250 2996 2.226437 TCTGATGCTTTGCTTTCGTTCC 59.774 45.455 0.00 0.00 0.00 3.62
2253 2999 3.550842 GGTTTCTGATGCTTTGCTTTCGT 60.551 43.478 0.00 0.00 0.00 3.85
2254 3000 2.982470 GGTTTCTGATGCTTTGCTTTCG 59.018 45.455 0.00 0.00 0.00 3.46
2255 3001 4.248691 AGGTTTCTGATGCTTTGCTTTC 57.751 40.909 0.00 0.00 0.00 2.62
2256 3002 4.502087 GGAAGGTTTCTGATGCTTTGCTTT 60.502 41.667 0.00 0.00 0.00 3.51
2283 3055 2.584236 TCCTCTATTCAGGCGTAGACC 58.416 52.381 0.00 0.00 31.70 3.85
2286 3058 5.241949 ACTTGTATCCTCTATTCAGGCGTAG 59.758 44.000 0.00 0.00 32.91 3.51
2287 3059 5.138276 ACTTGTATCCTCTATTCAGGCGTA 58.862 41.667 0.00 0.00 32.91 4.42
2288 3060 3.961408 ACTTGTATCCTCTATTCAGGCGT 59.039 43.478 0.00 0.00 32.91 5.68
2289 3061 4.592485 ACTTGTATCCTCTATTCAGGCG 57.408 45.455 0.00 0.00 32.91 5.52
2318 3146 8.988060 TCAATGTGGACCTCATTAGAGTATTTA 58.012 33.333 18.88 0.00 40.40 1.40
2324 3152 6.422100 CGTTATCAATGTGGACCTCATTAGAG 59.578 42.308 18.88 9.35 41.72 2.43
2325 3153 6.127168 ACGTTATCAATGTGGACCTCATTAGA 60.127 38.462 18.88 17.55 34.34 2.10
2326 3154 6.049149 ACGTTATCAATGTGGACCTCATTAG 58.951 40.000 18.88 13.90 34.34 1.73
2327 3155 5.984725 ACGTTATCAATGTGGACCTCATTA 58.015 37.500 18.88 9.96 34.34 1.90
2328 3156 4.843728 ACGTTATCAATGTGGACCTCATT 58.156 39.130 14.67 14.67 36.16 2.57
2362 3196 2.677836 GTTTGGCGATGCAGTTCAGATA 59.322 45.455 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.