Multiple sequence alignment - TraesCS6D01G216900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G216900 chr6D 100.000 3622 0 0 1 3622 306703112 306706733 0.000000e+00 6689.0
1 TraesCS6D01G216900 chr6D 100.000 2419 0 0 3985 6403 306707096 306709514 0.000000e+00 4468.0
2 TraesCS6D01G216900 chr6D 94.949 891 42 3 2697 3585 3615408 3616297 0.000000e+00 1393.0
3 TraesCS6D01G216900 chr6D 87.854 247 20 4 4618 4863 131608721 131608958 1.360000e-71 281.0
4 TraesCS6D01G216900 chr6D 92.667 150 8 3 4860 5008 351233581 351233434 5.030000e-51 213.0
5 TraesCS6D01G216900 chr6D 87.069 116 12 2 4749 4861 81590747 81590632 1.870000e-25 128.0
6 TraesCS6D01G216900 chr6B 90.411 2774 154 50 2 2706 474172226 474174956 0.000000e+00 3546.0
7 TraesCS6D01G216900 chr6B 93.277 1547 88 11 4860 6398 474175704 474177242 0.000000e+00 2266.0
8 TraesCS6D01G216900 chr6B 95.277 487 18 2 4143 4625 474175226 474175711 0.000000e+00 767.0
9 TraesCS6D01G216900 chr6B 85.938 256 20 7 4618 4864 228975183 228975431 6.370000e-65 259.0
10 TraesCS6D01G216900 chr6A 89.719 2772 157 51 2 2695 442392101 442394822 0.000000e+00 3422.0
11 TraesCS6D01G216900 chr6A 93.459 1544 79 14 4860 6397 442395570 442397097 0.000000e+00 2272.0
12 TraesCS6D01G216900 chr6A 95.859 483 19 1 4143 4625 442395096 442395577 0.000000e+00 780.0
13 TraesCS6D01G216900 chr6A 88.710 248 18 4 4618 4863 169514766 169515005 1.750000e-75 294.0
14 TraesCS6D01G216900 chr6A 90.071 141 13 1 3993 4133 442394829 442394968 1.420000e-41 182.0
15 TraesCS6D01G216900 chr6A 97.059 34 1 0 4596 4629 107362519 107362486 2.490000e-04 58.4
16 TraesCS6D01G216900 chr2D 95.811 931 31 6 2697 3622 13883789 13882862 0.000000e+00 1496.0
17 TraesCS6D01G216900 chr4D 96.145 882 30 4 2697 3576 509484607 509485486 0.000000e+00 1437.0
18 TraesCS6D01G216900 chr4D 89.362 188 17 2 4821 5008 309927607 309927791 3.860000e-57 233.0
19 TraesCS6D01G216900 chr4D 93.377 151 6 3 4860 5010 25439939 25439793 3.010000e-53 220.0
20 TraesCS6D01G216900 chr4D 92.617 149 11 0 4860 5008 163791352 163791500 1.400000e-51 215.0
21 TraesCS6D01G216900 chr4D 96.970 33 0 1 4591 4623 347513870 347513839 3.000000e-03 54.7
22 TraesCS6D01G216900 chr4D 92.105 38 2 1 4591 4628 237029529 237029493 1.200000e-02 52.8
23 TraesCS6D01G216900 chr1B 95.740 892 34 4 2696 3585 592344483 592345372 0.000000e+00 1434.0
24 TraesCS6D01G216900 chrUn 95.536 896 35 5 2697 3589 132112019 132111126 0.000000e+00 1428.0
25 TraesCS6D01G216900 chr5D 94.237 937 40 5 2698 3622 549491459 549490525 0.000000e+00 1419.0
26 TraesCS6D01G216900 chr5D 93.919 148 8 1 4860 5007 461072617 461072763 8.360000e-54 222.0
27 TraesCS6D01G216900 chr5B 95.286 891 40 2 2697 3586 391640886 391639997 0.000000e+00 1411.0
28 TraesCS6D01G216900 chr5B 94.150 906 47 6 2684 3586 684599713 684598811 0.000000e+00 1375.0
29 TraesCS6D01G216900 chr3B 94.382 890 49 1 2697 3586 803112096 803112984 0.000000e+00 1365.0
30 TraesCS6D01G216900 chr3B 86.777 242 23 3 4624 4863 225173171 225173405 1.770000e-65 261.0
31 TraesCS6D01G216900 chr7D 87.952 249 23 3 4618 4864 571874358 571874115 2.920000e-73 287.0
32 TraesCS6D01G216900 chr7D 84.810 237 16 3 4633 4860 439241602 439241827 3.010000e-53 220.0
33 TraesCS6D01G216900 chr3D 86.831 243 21 5 4624 4863 153506997 153507231 1.770000e-65 261.0
34 TraesCS6D01G216900 chr3D 94.231 52 3 0 2202 2253 159973864 159973915 5.320000e-11 80.5
35 TraesCS6D01G216900 chr3A 86.364 242 23 4 4624 4863 176148235 176148002 8.240000e-64 255.0
36 TraesCS6D01G216900 chr3A 94.595 37 1 1 4592 4628 183614697 183614662 8.970000e-04 56.5
37 TraesCS6D01G216900 chr1A 84.861 251 26 5 4619 4866 494348886 494348645 6.410000e-60 243.0
38 TraesCS6D01G216900 chr1A 89.744 117 8 3 4749 4861 440889685 440889569 5.170000e-31 147.0
39 TraesCS6D01G216900 chr7B 85.408 233 21 5 4634 4860 454528586 454528361 4.990000e-56 230.0
40 TraesCS6D01G216900 chr7B 92.763 152 7 4 4860 5010 428829520 428829372 3.890000e-52 217.0
41 TraesCS6D01G216900 chr5A 84.810 237 24 7 4623 4857 567789487 567789261 1.800000e-55 228.0
42 TraesCS6D01G216900 chr2B 92.715 151 10 1 4860 5010 608226871 608226722 3.890000e-52 217.0
43 TraesCS6D01G216900 chr2B 90.385 52 3 2 2202 2253 66556032 66555983 4.140000e-07 67.6
44 TraesCS6D01G216900 chr4B 80.000 245 28 12 4626 4860 510167810 510168043 1.850000e-35 161.0
45 TraesCS6D01G216900 chr4B 94.595 37 0 2 4590 4625 483266366 483266401 8.970000e-04 56.5
46 TraesCS6D01G216900 chr1D 97.059 34 1 0 4597 4630 365716910 365716943 2.490000e-04 58.4
47 TraesCS6D01G216900 chr7A 96.970 33 1 0 4595 4627 610448972 610449004 8.970000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G216900 chr6D 306703112 306709514 6402 False 5578.5 6689 100.000000 1 6403 2 chr6D.!!$F3 6402
1 TraesCS6D01G216900 chr6D 3615408 3616297 889 False 1393.0 1393 94.949000 2697 3585 1 chr6D.!!$F1 888
2 TraesCS6D01G216900 chr6B 474172226 474177242 5016 False 2193.0 3546 92.988333 2 6398 3 chr6B.!!$F2 6396
3 TraesCS6D01G216900 chr6A 442392101 442397097 4996 False 1664.0 3422 92.277000 2 6397 4 chr6A.!!$F2 6395
4 TraesCS6D01G216900 chr2D 13882862 13883789 927 True 1496.0 1496 95.811000 2697 3622 1 chr2D.!!$R1 925
5 TraesCS6D01G216900 chr4D 509484607 509485486 879 False 1437.0 1437 96.145000 2697 3576 1 chr4D.!!$F3 879
6 TraesCS6D01G216900 chr1B 592344483 592345372 889 False 1434.0 1434 95.740000 2696 3585 1 chr1B.!!$F1 889
7 TraesCS6D01G216900 chrUn 132111126 132112019 893 True 1428.0 1428 95.536000 2697 3589 1 chrUn.!!$R1 892
8 TraesCS6D01G216900 chr5D 549490525 549491459 934 True 1419.0 1419 94.237000 2698 3622 1 chr5D.!!$R1 924
9 TraesCS6D01G216900 chr5B 391639997 391640886 889 True 1411.0 1411 95.286000 2697 3586 1 chr5B.!!$R1 889
10 TraesCS6D01G216900 chr5B 684598811 684599713 902 True 1375.0 1375 94.150000 2684 3586 1 chr5B.!!$R2 902
11 TraesCS6D01G216900 chr3B 803112096 803112984 888 False 1365.0 1365 94.382000 2697 3586 1 chr3B.!!$F2 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 643 0.322008 CTCAACTTGCACCCTCCTCC 60.322 60.000 0.00 0.00 0.00 4.30 F
1491 1537 0.317603 GGCTGATTCATCATGCGTGC 60.318 55.000 0.00 0.00 36.02 5.34 F
1495 1541 0.317603 GATTCATCATGCGTGCTGCC 60.318 55.000 4.85 0.00 45.60 4.85 F
1553 1609 1.209747 GGGCTAACCAAGAGGACGATT 59.790 52.381 0.00 0.00 39.85 3.34 F
2193 2270 1.422402 AGGCCCTTCTTTACAAACGGA 59.578 47.619 0.00 0.00 0.00 4.69 F
4002 4119 1.343821 GCGGTCGCGAACATGTTAG 59.656 57.895 25.89 12.96 0.00 2.34 F
4646 4891 0.036388 ACCCTGATAAGTGCCACACG 60.036 55.000 0.00 0.00 39.64 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1541 0.108472 TTCTCAGATCACTGCCTGCG 60.108 55.000 0.00 0.0 43.17 5.18 R
2867 2974 1.134098 ACCTCAGTCTGTGGTGGTTTG 60.134 52.381 22.79 0.0 42.10 2.93 R
3177 3284 1.288127 GTGTTCGTAGTGAGGCGGT 59.712 57.895 0.00 0.0 0.00 5.68 R
3540 3647 4.162690 GTCCGCTCGGCCCAGATT 62.163 66.667 0.00 0.0 34.68 2.40 R
4133 4256 0.793478 CGTCGAAGAGTACACGGCTG 60.793 60.000 0.00 0.0 36.95 4.85 R
4803 5048 0.179051 ACACCGCCCTGACGTTTTTA 60.179 50.000 0.00 0.0 0.00 1.52 R
5813 6060 1.075305 GGTTGCGGGTCCCCTTTTA 59.925 57.895 1.00 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.256178 TGCCTAGCCAGTTGCCCA 61.256 61.111 0.00 0.00 42.71 5.36
149 150 4.686554 CCAGACTTTAGACTTGTTCCTTCG 59.313 45.833 0.00 0.00 0.00 3.79
282 286 7.171447 TCTAGAAGCGTAGTACGTATCTTTC 57.829 40.000 26.22 19.44 44.73 2.62
363 368 0.468226 TTCAGCTCCTCGGTGTGTTT 59.532 50.000 0.00 0.00 41.76 2.83
402 420 2.413837 TGCTTCAAGACGAAACTAGCC 58.586 47.619 0.00 0.00 31.71 3.93
419 437 1.080569 CCGGGCACAAACATCAAGC 60.081 57.895 0.00 0.00 0.00 4.01
441 460 2.821366 GCTCCGTGCACCATGAGG 60.821 66.667 20.76 12.90 42.31 3.86
457 479 0.807496 GAGGCCTAGCACTGCTTTTG 59.193 55.000 4.42 0.00 40.44 2.44
604 629 2.275318 CTCTCCTTCCATTCGCTCAAC 58.725 52.381 0.00 0.00 0.00 3.18
617 642 0.957888 GCTCAACTTGCACCCTCCTC 60.958 60.000 0.00 0.00 0.00 3.71
618 643 0.322008 CTCAACTTGCACCCTCCTCC 60.322 60.000 0.00 0.00 0.00 4.30
619 644 1.672356 CAACTTGCACCCTCCTCCG 60.672 63.158 0.00 0.00 0.00 4.63
636 661 6.090483 TCCTCCGTTCTGATTCAGATTATC 57.910 41.667 16.82 7.62 40.39 1.75
658 683 2.684843 GCAGGAACAAGCGAGGCTG 61.685 63.158 0.00 0.00 39.62 4.85
667 694 1.064654 CAAGCGAGGCTGATTAAAGGC 59.935 52.381 0.00 0.00 39.62 4.35
689 716 3.450578 GCACGTTCCGGTTCAGATTATA 58.549 45.455 0.00 0.00 0.00 0.98
811 838 3.850508 GGGTGCGTGTTTCCCTTT 58.149 55.556 0.00 0.00 38.29 3.11
864 891 2.095161 GTCCTGGTCGTCAGTGTCTTAG 60.095 54.545 0.00 0.00 41.83 2.18
900 927 1.069636 GCTGAGCTTTGGTTTCACTCG 60.070 52.381 0.00 0.00 0.00 4.18
923 950 5.074746 ACAGGTTCCTTGGGATAAACTTT 57.925 39.130 0.00 0.00 0.00 2.66
947 981 3.784178 TCCTTGATCTCCAGTCTTCACT 58.216 45.455 0.00 0.00 0.00 3.41
953 987 2.808919 TCTCCAGTCTTCACTACCAGG 58.191 52.381 0.00 0.00 0.00 4.45
997 1031 1.661821 CGTGCAGATAGGGTAGCGC 60.662 63.158 0.00 0.00 0.00 5.92
1120 1154 3.367806 GGTACCAAGAACCGTAGACTTCC 60.368 52.174 7.15 0.00 0.00 3.46
1265 1299 2.580601 GGCACGGTGTGTAGAGGGT 61.581 63.158 10.24 0.00 35.75 4.34
1266 1300 1.080025 GCACGGTGTGTAGAGGGTC 60.080 63.158 10.24 0.00 35.75 4.46
1274 1316 1.203187 TGTGTAGAGGGTCTCCTGCTT 60.203 52.381 0.00 0.00 45.05 3.91
1276 1318 0.827368 GTAGAGGGTCTCCTGCTTGG 59.173 60.000 0.00 0.00 45.05 3.61
1293 1335 3.378112 GCTTGGCTGCTACATATGTGAAA 59.622 43.478 18.81 2.60 0.00 2.69
1294 1336 4.037208 GCTTGGCTGCTACATATGTGAAAT 59.963 41.667 18.81 0.00 0.00 2.17
1324 1367 5.683876 TGAGGGGTTTTGTTTTGATTTGA 57.316 34.783 0.00 0.00 0.00 2.69
1326 1369 5.877564 TGAGGGGTTTTGTTTTGATTTGAAC 59.122 36.000 0.00 0.00 0.00 3.18
1329 1372 4.336993 GGGTTTTGTTTTGATTTGAACCCC 59.663 41.667 9.67 0.00 45.66 4.95
1333 1376 4.414337 TGTTTTGATTTGAACCCCTTGG 57.586 40.909 0.00 0.00 37.80 3.61
1349 1392 2.424234 CCTTGGTTGGTTTTCAGGAGGA 60.424 50.000 0.00 0.00 0.00 3.71
1394 1437 1.726853 CTTTGGAAGAGTACCTGCCG 58.273 55.000 4.46 0.00 44.28 5.69
1406 1449 2.187946 CTGCCGGTTCTGCTAGGG 59.812 66.667 1.90 0.00 0.00 3.53
1425 1468 1.268079 GGCTGGTGAAAGAAAGTGAGC 59.732 52.381 0.00 0.00 0.00 4.26
1441 1486 5.465532 AGTGAGCATCCTATCATACAGTG 57.534 43.478 0.00 0.00 0.00 3.66
1450 1496 6.985188 TCCTATCATACAGTGTTTTGCTTC 57.015 37.500 0.00 0.00 0.00 3.86
1452 1498 4.685169 ATCATACAGTGTTTTGCTTCGG 57.315 40.909 0.00 0.00 0.00 4.30
1466 1512 2.163412 TGCTTCGGTTTTATGATGGTGC 59.837 45.455 0.00 0.00 0.00 5.01
1473 1519 4.675146 CGGTTTTATGATGGTGCTTTCTGG 60.675 45.833 0.00 0.00 0.00 3.86
1487 1533 3.795826 GCTTTCTGGCTGATTCATCATGC 60.796 47.826 0.00 0.00 36.02 4.06
1491 1537 0.317603 GGCTGATTCATCATGCGTGC 60.318 55.000 0.00 0.00 36.02 5.34
1494 1540 0.379316 TGATTCATCATGCGTGCTGC 59.621 50.000 4.85 0.00 46.70 5.25
1495 1541 0.317603 GATTCATCATGCGTGCTGCC 60.318 55.000 4.85 0.00 45.60 4.85
1553 1609 1.209747 GGGCTAACCAAGAGGACGATT 59.790 52.381 0.00 0.00 39.85 3.34
1572 1637 3.788116 TTCTGAGGTAAGGATGGGGTA 57.212 47.619 0.00 0.00 0.00 3.69
1576 1641 4.171243 TCTGAGGTAAGGATGGGGTACATA 59.829 45.833 0.00 0.00 40.72 2.29
1596 1661 3.853355 ACATGTTCAGAGATGATCCCC 57.147 47.619 0.00 0.00 31.36 4.81
1615 1680 4.026052 CCCCTGGTAAAAGATGCTCAAAT 58.974 43.478 0.00 0.00 0.00 2.32
1721 1786 2.032528 TTCCTGCAGGCCAACTCG 59.967 61.111 28.91 1.49 34.44 4.18
1727 1792 3.429141 CAGGCCAACTCGCTGCTG 61.429 66.667 5.01 0.00 0.00 4.41
1803 1868 6.421202 GTCATTCGGTACTTACATCTTGGATC 59.579 42.308 0.00 0.00 0.00 3.36
1804 1869 5.925506 TTCGGTACTTACATCTTGGATCA 57.074 39.130 0.00 0.00 0.00 2.92
1805 1870 5.925506 TCGGTACTTACATCTTGGATCAA 57.074 39.130 0.00 0.00 0.00 2.57
1806 1871 5.902681 TCGGTACTTACATCTTGGATCAAG 58.097 41.667 0.00 1.53 42.25 3.02
1839 1915 9.624697 GTAAAATTTCATGATTTAGTGCACTGA 57.375 29.630 29.57 19.25 0.00 3.41
1916 1993 5.806502 CACTGTTGATGTTTTCTTGAAAGCA 59.193 36.000 13.35 13.35 0.00 3.91
1918 1995 4.805192 TGTTGATGTTTTCTTGAAAGCAGC 59.195 37.500 17.03 17.03 0.00 5.25
1938 2015 2.086869 CTGGGTACTTGGATTGTGCAG 58.913 52.381 0.00 0.00 0.00 4.41
2036 2113 2.614481 GCCCAAGTTTAGGATGACGTCA 60.614 50.000 22.48 22.48 0.00 4.35
2043 2120 4.989168 AGTTTAGGATGACGTCAACTGAAC 59.011 41.667 31.52 31.52 35.59 3.18
2050 2127 4.118093 TGACGTCAACTGAACTCTTTGA 57.882 40.909 17.62 0.00 0.00 2.69
2149 2226 5.351740 GCCAGGTACTCTTCAGTAATTTGAC 59.648 44.000 0.00 0.00 36.84 3.18
2150 2227 6.464222 CCAGGTACTCTTCAGTAATTTGACA 58.536 40.000 0.00 0.00 36.84 3.58
2152 2229 7.444183 CCAGGTACTCTTCAGTAATTTGACAAA 59.556 37.037 2.48 2.48 36.84 2.83
2153 2230 8.836413 CAGGTACTCTTCAGTAATTTGACAAAA 58.164 33.333 4.41 0.00 36.84 2.44
2154 2231 9.403583 AGGTACTCTTCAGTAATTTGACAAAAA 57.596 29.630 4.41 0.00 36.84 1.94
2180 2257 5.816955 TTTTTGCAAAGTATAAGGCCCTT 57.183 34.783 12.41 0.00 0.00 3.95
2181 2258 5.400066 TTTTGCAAAGTATAAGGCCCTTC 57.600 39.130 12.41 0.00 0.00 3.46
2182 2259 4.316025 TTGCAAAGTATAAGGCCCTTCT 57.684 40.909 0.00 0.00 0.00 2.85
2184 2261 4.672899 TGCAAAGTATAAGGCCCTTCTTT 58.327 39.130 0.00 0.57 0.00 2.52
2186 2263 5.650703 TGCAAAGTATAAGGCCCTTCTTTAC 59.349 40.000 0.00 0.00 0.00 2.01
2188 2265 6.152154 GCAAAGTATAAGGCCCTTCTTTACAA 59.848 38.462 0.00 0.00 0.00 2.41
2189 2266 7.309560 GCAAAGTATAAGGCCCTTCTTTACAAA 60.310 37.037 0.00 0.00 0.00 2.83
2190 2267 7.698506 AAGTATAAGGCCCTTCTTTACAAAC 57.301 36.000 0.00 0.00 0.00 2.93
2191 2268 5.878669 AGTATAAGGCCCTTCTTTACAAACG 59.121 40.000 0.00 0.00 0.00 3.60
2192 2269 1.905637 AGGCCCTTCTTTACAAACGG 58.094 50.000 0.00 0.00 0.00 4.44
2193 2270 1.422402 AGGCCCTTCTTTACAAACGGA 59.578 47.619 0.00 0.00 0.00 4.69
2195 2272 2.823747 GGCCCTTCTTTACAAACGGAAT 59.176 45.455 0.00 0.00 0.00 3.01
2196 2273 4.011698 GGCCCTTCTTTACAAACGGAATA 58.988 43.478 0.00 0.00 0.00 1.75
2197 2274 4.142534 GGCCCTTCTTTACAAACGGAATAC 60.143 45.833 0.00 0.00 0.00 1.89
2198 2275 4.456566 GCCCTTCTTTACAAACGGAATACA 59.543 41.667 0.00 0.00 0.00 2.29
2199 2276 5.124936 GCCCTTCTTTACAAACGGAATACAT 59.875 40.000 0.00 0.00 0.00 2.29
2200 2277 6.349860 GCCCTTCTTTACAAACGGAATACATT 60.350 38.462 0.00 0.00 0.00 2.71
2201 2278 7.148205 GCCCTTCTTTACAAACGGAATACATTA 60.148 37.037 0.00 0.00 0.00 1.90
2202 2279 8.899771 CCCTTCTTTACAAACGGAATACATTAT 58.100 33.333 0.00 0.00 0.00 1.28
2203 2280 9.716507 CCTTCTTTACAAACGGAATACATTATG 57.283 33.333 0.00 0.00 0.00 1.90
2204 2281 9.716507 CTTCTTTACAAACGGAATACATTATGG 57.283 33.333 0.00 0.00 0.00 2.74
2205 2282 9.451002 TTCTTTACAAACGGAATACATTATGGA 57.549 29.630 0.00 0.00 0.00 3.41
2206 2283 9.621629 TCTTTACAAACGGAATACATTATGGAT 57.378 29.630 0.00 0.00 0.00 3.41
2210 2287 7.871853 ACAAACGGAATACATTATGGATTAGC 58.128 34.615 2.18 0.00 29.34 3.09
2213 2290 7.004555 ACGGAATACATTATGGATTAGCTCA 57.995 36.000 2.18 0.00 29.34 4.26
2256 2333 6.161855 ACTACTTCAACTCTGTCACATTGA 57.838 37.500 0.00 0.00 0.00 2.57
2272 2349 6.529125 GTCACATTGATTGCAAGTAAATCTGG 59.471 38.462 4.94 0.00 37.45 3.86
2305 2409 8.489990 AGATGTTTGAGTGACTTATCATCTTG 57.510 34.615 14.70 0.00 37.91 3.02
2506 2610 8.124823 TCTTTCGCATCATACTTCATCATTTTC 58.875 33.333 0.00 0.00 0.00 2.29
2750 2855 1.608590 CAAAGCAACCAACACCGAGAT 59.391 47.619 0.00 0.00 0.00 2.75
2752 2857 2.851263 AGCAACCAACACCGAGATAA 57.149 45.000 0.00 0.00 0.00 1.75
2814 2921 4.058124 GGAAGAAGAAACAAATGCCAACC 58.942 43.478 0.00 0.00 0.00 3.77
2882 2989 2.289444 CGGATACAAACCACCACAGACT 60.289 50.000 0.00 0.00 0.00 3.24
3161 3268 2.985282 CCCATGCGCCAACACAGT 60.985 61.111 4.18 0.00 0.00 3.55
3222 3329 2.291043 GGCCAAGAGGACCGGAGAA 61.291 63.158 9.46 0.00 36.69 2.87
4002 4119 1.343821 GCGGTCGCGAACATGTTAG 59.656 57.895 25.89 12.96 0.00 2.34
4015 4132 8.635124 CGCGAACATGTTAGTTATTTTGATTTT 58.365 29.630 18.28 0.00 0.00 1.82
4038 4155 4.755629 TCAAATTGCAAATGTGTTCCATGG 59.244 37.500 4.97 4.97 32.82 3.66
4045 4162 4.378774 CAAATGTGTTCCATGGCTTGAAA 58.621 39.130 6.96 0.00 32.82 2.69
4048 4165 2.299582 TGTGTTCCATGGCTTGAAATGG 59.700 45.455 6.96 0.00 44.06 3.16
4101 4224 1.876416 GCTACGTGAGGGCAAAACTCA 60.876 52.381 0.00 0.00 42.31 3.41
4122 4245 2.125512 GTGTACCGCCCAGCTCAG 60.126 66.667 0.00 0.00 0.00 3.35
4141 4264 1.005630 GAGCAGAACTCAGCCGTGT 60.006 57.895 0.00 0.00 45.49 4.49
4152 4393 0.793478 CAGCCGTGTACTCTTCGACG 60.793 60.000 0.00 0.00 0.00 5.12
4153 4394 2.150837 GCCGTGTACTCTTCGACGC 61.151 63.158 0.00 0.00 0.00 5.19
4159 4400 3.372676 TACTCTTCGACGCGGCGAC 62.373 63.158 40.16 22.34 40.42 5.19
4165 4406 2.642249 TTCGACGCGGCGACAGATAG 62.642 60.000 40.16 4.25 40.42 2.08
4300 4541 2.882137 GGGAAACACCGAGAAATCACAA 59.118 45.455 0.00 0.00 40.11 3.33
4311 4552 4.334759 CGAGAAATCACAAGAGATGGCAAT 59.665 41.667 0.00 0.00 0.00 3.56
4364 4605 4.284490 TGAAAGAGAGCAAAAGAGCCTCTA 59.716 41.667 0.00 0.00 39.56 2.43
4467 4708 4.844349 ATCTACTACTGTGCCATTTGGT 57.156 40.909 0.00 0.00 37.57 3.67
4493 4734 4.939052 TCTAGGCCTAGTATGAACAAGC 57.061 45.455 33.84 0.00 34.84 4.01
4495 4736 5.702266 TCTAGGCCTAGTATGAACAAGCTA 58.298 41.667 33.84 11.68 34.84 3.32
4508 4749 0.179062 CAAGCTAGCGCAAGGAGGAT 60.179 55.000 11.47 0.00 39.10 3.24
4580 4825 1.942657 GTGTCACAAGATGCACACAGT 59.057 47.619 0.00 0.00 38.33 3.55
4589 4834 5.474532 ACAAGATGCACACAGTCATTATTGT 59.525 36.000 0.00 0.00 32.75 2.71
4597 4842 4.925054 ACACAGTCATTATTGTTGCATTGC 59.075 37.500 0.46 0.46 0.00 3.56
4625 4870 7.957992 ATACTCCCTCCGTTCCTAAATATAG 57.042 40.000 0.00 0.00 0.00 1.31
4641 4886 5.763876 AATATAGGACCCTGATAAGTGCC 57.236 43.478 0.00 0.00 0.00 5.01
4642 4887 2.561209 TAGGACCCTGATAAGTGCCA 57.439 50.000 0.00 0.00 0.00 4.92
4643 4888 0.912486 AGGACCCTGATAAGTGCCAC 59.088 55.000 0.00 0.00 0.00 5.01
4644 4889 0.618458 GGACCCTGATAAGTGCCACA 59.382 55.000 0.00 0.00 0.00 4.17
4645 4890 1.679032 GGACCCTGATAAGTGCCACAC 60.679 57.143 0.00 0.00 34.10 3.82
4646 4891 0.036388 ACCCTGATAAGTGCCACACG 60.036 55.000 0.00 0.00 39.64 4.49
4647 4892 0.036388 CCCTGATAAGTGCCACACGT 60.036 55.000 0.00 0.00 39.64 4.49
4648 4893 1.078709 CCTGATAAGTGCCACACGTG 58.921 55.000 15.48 15.48 39.64 4.49
4649 4894 1.608025 CCTGATAAGTGCCACACGTGT 60.608 52.381 17.22 17.22 39.64 4.49
4650 4895 1.460743 CTGATAAGTGCCACACGTGTG 59.539 52.381 36.13 36.13 45.23 3.82
4668 4913 2.870372 GCACGAAGCAATTCCGCT 59.130 55.556 0.00 0.00 46.67 5.52
4669 4914 1.226128 GCACGAAGCAATTCCGCTC 60.226 57.895 0.00 0.00 42.89 5.03
4670 4915 1.639298 GCACGAAGCAATTCCGCTCT 61.639 55.000 0.00 0.00 42.89 4.09
4671 4916 0.095935 CACGAAGCAATTCCGCTCTG 59.904 55.000 0.00 0.00 42.89 3.35
4672 4917 0.037326 ACGAAGCAATTCCGCTCTGA 60.037 50.000 0.00 0.00 42.89 3.27
4673 4918 0.371645 CGAAGCAATTCCGCTCTGAC 59.628 55.000 0.00 0.00 42.89 3.51
4674 4919 0.371645 GAAGCAATTCCGCTCTGACG 59.628 55.000 0.00 0.00 42.89 4.35
4675 4920 0.320771 AAGCAATTCCGCTCTGACGT 60.321 50.000 0.00 0.00 42.89 4.34
4676 4921 0.320771 AGCAATTCCGCTCTGACGTT 60.321 50.000 0.00 0.00 37.91 3.99
4677 4922 0.517316 GCAATTCCGCTCTGACGTTT 59.483 50.000 0.00 0.00 0.00 3.60
4678 4923 1.069227 GCAATTCCGCTCTGACGTTTT 60.069 47.619 0.00 0.00 0.00 2.43
4679 4924 2.604614 GCAATTCCGCTCTGACGTTTTT 60.605 45.455 0.00 0.00 0.00 1.94
4700 4945 4.922471 TTGTTGGCAAGTTTAGTTACCC 57.078 40.909 0.00 0.00 0.00 3.69
4701 4946 2.879646 TGTTGGCAAGTTTAGTTACCCG 59.120 45.455 0.00 0.00 0.00 5.28
4702 4947 3.140623 GTTGGCAAGTTTAGTTACCCGA 58.859 45.455 0.00 0.00 0.00 5.14
4703 4948 3.048337 TGGCAAGTTTAGTTACCCGAG 57.952 47.619 0.00 0.00 0.00 4.63
4704 4949 2.289819 TGGCAAGTTTAGTTACCCGAGG 60.290 50.000 0.00 0.00 0.00 4.63
4705 4950 2.027837 GGCAAGTTTAGTTACCCGAGGA 60.028 50.000 0.00 0.00 0.00 3.71
4706 4951 3.370209 GGCAAGTTTAGTTACCCGAGGAT 60.370 47.826 0.00 0.00 0.00 3.24
4707 4952 3.621715 GCAAGTTTAGTTACCCGAGGATG 59.378 47.826 0.00 0.00 0.00 3.51
4708 4953 4.189231 CAAGTTTAGTTACCCGAGGATGG 58.811 47.826 0.00 0.00 0.00 3.51
4709 4954 2.169978 AGTTTAGTTACCCGAGGATGGC 59.830 50.000 0.00 0.00 0.00 4.40
4710 4955 1.868713 TTAGTTACCCGAGGATGGCA 58.131 50.000 0.00 0.00 0.00 4.92
4711 4956 1.868713 TAGTTACCCGAGGATGGCAA 58.131 50.000 0.00 0.00 0.00 4.52
4712 4957 0.252197 AGTTACCCGAGGATGGCAAC 59.748 55.000 0.00 0.00 0.00 4.17
4713 4958 0.252197 GTTACCCGAGGATGGCAACT 59.748 55.000 0.00 0.00 37.61 3.16
4714 4959 0.988832 TTACCCGAGGATGGCAACTT 59.011 50.000 0.00 0.00 37.61 2.66
4715 4960 0.988832 TACCCGAGGATGGCAACTTT 59.011 50.000 0.00 0.00 37.61 2.66
4716 4961 0.988832 ACCCGAGGATGGCAACTTTA 59.011 50.000 0.00 0.00 37.61 1.85
4717 4962 1.065418 ACCCGAGGATGGCAACTTTAG 60.065 52.381 0.00 0.00 37.61 1.85
4718 4963 1.065418 CCCGAGGATGGCAACTTTAGT 60.065 52.381 0.00 0.00 37.61 2.24
4719 4964 2.618045 CCCGAGGATGGCAACTTTAGTT 60.618 50.000 0.00 0.00 39.12 2.24
4731 4976 3.923017 ACTTTAGTTGTGAAGCATGGC 57.077 42.857 0.00 0.00 0.00 4.40
4732 4977 3.221771 ACTTTAGTTGTGAAGCATGGCA 58.778 40.909 0.00 0.00 0.00 4.92
4733 4978 3.636300 ACTTTAGTTGTGAAGCATGGCAA 59.364 39.130 0.00 0.00 0.00 4.52
4734 4979 3.641437 TTAGTTGTGAAGCATGGCAAC 57.359 42.857 0.00 0.00 40.83 4.17
4735 4980 1.696063 AGTTGTGAAGCATGGCAACT 58.304 45.000 9.78 9.78 44.36 3.16
4736 4981 2.034124 AGTTGTGAAGCATGGCAACTT 58.966 42.857 5.89 5.89 46.18 2.66
4737 4982 2.431782 AGTTGTGAAGCATGGCAACTTT 59.568 40.909 7.47 0.00 46.18 2.66
4738 4983 2.796593 GTTGTGAAGCATGGCAACTTTC 59.203 45.455 7.47 4.81 38.41 2.62
4739 4984 2.309613 TGTGAAGCATGGCAACTTTCT 58.690 42.857 7.47 0.00 37.61 2.52
4740 4985 2.034939 TGTGAAGCATGGCAACTTTCTG 59.965 45.455 7.47 0.00 37.61 3.02
4741 4986 2.035066 GTGAAGCATGGCAACTTTCTGT 59.965 45.455 7.47 0.00 37.61 3.41
4742 4987 2.694628 TGAAGCATGGCAACTTTCTGTT 59.305 40.909 7.47 0.00 39.92 3.16
4743 4988 3.132646 TGAAGCATGGCAACTTTCTGTTT 59.867 39.130 7.47 0.00 36.63 2.83
4744 4989 3.102052 AGCATGGCAACTTTCTGTTTG 57.898 42.857 0.00 0.00 36.63 2.93
4745 4990 2.137523 GCATGGCAACTTTCTGTTTGG 58.862 47.619 0.00 0.00 36.63 3.28
4746 4991 2.224018 GCATGGCAACTTTCTGTTTGGA 60.224 45.455 0.00 0.00 36.63 3.53
4747 4992 3.555586 GCATGGCAACTTTCTGTTTGGAT 60.556 43.478 0.00 0.00 36.63 3.41
4748 4993 4.634199 CATGGCAACTTTCTGTTTGGATT 58.366 39.130 0.00 0.00 36.63 3.01
4749 4994 4.751767 TGGCAACTTTCTGTTTGGATTT 57.248 36.364 0.00 0.00 36.63 2.17
4750 4995 5.096443 TGGCAACTTTCTGTTTGGATTTT 57.904 34.783 0.00 0.00 36.63 1.82
4751 4996 4.874966 TGGCAACTTTCTGTTTGGATTTTG 59.125 37.500 0.00 0.00 36.63 2.44
4752 4997 4.273235 GGCAACTTTCTGTTTGGATTTTGG 59.727 41.667 0.00 0.00 36.63 3.28
4753 4998 5.115480 GCAACTTTCTGTTTGGATTTTGGA 58.885 37.500 0.00 0.00 36.63 3.53
4754 4999 5.759763 GCAACTTTCTGTTTGGATTTTGGAT 59.240 36.000 0.00 0.00 36.63 3.41
4755 5000 6.293027 GCAACTTTCTGTTTGGATTTTGGATG 60.293 38.462 0.00 0.00 36.63 3.51
4756 5001 5.857268 ACTTTCTGTTTGGATTTTGGATGG 58.143 37.500 0.00 0.00 0.00 3.51
4757 5002 3.959535 TCTGTTTGGATTTTGGATGGC 57.040 42.857 0.00 0.00 0.00 4.40
4758 5003 3.237746 TCTGTTTGGATTTTGGATGGCA 58.762 40.909 0.00 0.00 0.00 4.92
4759 5004 3.645212 TCTGTTTGGATTTTGGATGGCAA 59.355 39.130 0.00 0.00 0.00 4.52
4760 5005 3.998341 CTGTTTGGATTTTGGATGGCAAG 59.002 43.478 0.00 0.00 0.00 4.01
4761 5006 3.390639 TGTTTGGATTTTGGATGGCAAGT 59.609 39.130 0.00 0.00 0.00 3.16
4762 5007 4.590647 TGTTTGGATTTTGGATGGCAAGTA 59.409 37.500 0.00 0.00 0.00 2.24
4763 5008 5.248020 TGTTTGGATTTTGGATGGCAAGTAT 59.752 36.000 0.00 0.00 0.00 2.12
4764 5009 5.596836 TTGGATTTTGGATGGCAAGTATC 57.403 39.130 0.00 0.00 0.00 2.24
4765 5010 4.608269 TGGATTTTGGATGGCAAGTATCA 58.392 39.130 0.00 0.00 0.00 2.15
4766 5011 4.646040 TGGATTTTGGATGGCAAGTATCAG 59.354 41.667 0.00 0.00 0.00 2.90
4767 5012 4.646492 GGATTTTGGATGGCAAGTATCAGT 59.354 41.667 0.00 0.00 0.00 3.41
4768 5013 5.127682 GGATTTTGGATGGCAAGTATCAGTT 59.872 40.000 0.00 0.00 0.00 3.16
4769 5014 6.351286 GGATTTTGGATGGCAAGTATCAGTTT 60.351 38.462 0.00 0.00 0.00 2.66
4770 5015 6.418057 TTTTGGATGGCAAGTATCAGTTTT 57.582 33.333 0.00 0.00 0.00 2.43
4771 5016 6.418057 TTTGGATGGCAAGTATCAGTTTTT 57.582 33.333 0.00 0.00 0.00 1.94
4800 5045 3.848272 TTTTTCGGATGGCAGCTTTAG 57.152 42.857 1.50 0.00 0.00 1.85
4801 5046 2.779755 TTTCGGATGGCAGCTTTAGA 57.220 45.000 1.50 0.00 0.00 2.10
4802 5047 2.315925 TTCGGATGGCAGCTTTAGAG 57.684 50.000 1.50 0.00 0.00 2.43
4803 5048 1.195115 TCGGATGGCAGCTTTAGAGT 58.805 50.000 1.50 0.00 0.00 3.24
4804 5049 2.384828 TCGGATGGCAGCTTTAGAGTA 58.615 47.619 1.50 0.00 0.00 2.59
4805 5050 2.764010 TCGGATGGCAGCTTTAGAGTAA 59.236 45.455 1.50 0.00 0.00 2.24
4806 5051 3.196901 TCGGATGGCAGCTTTAGAGTAAA 59.803 43.478 1.50 0.00 0.00 2.01
4807 5052 3.938963 CGGATGGCAGCTTTAGAGTAAAA 59.061 43.478 1.50 0.00 0.00 1.52
4808 5053 4.394920 CGGATGGCAGCTTTAGAGTAAAAA 59.605 41.667 1.50 0.00 0.00 1.94
4809 5054 5.641709 GGATGGCAGCTTTAGAGTAAAAAC 58.358 41.667 1.50 0.00 0.00 2.43
4810 5055 4.742438 TGGCAGCTTTAGAGTAAAAACG 57.258 40.909 0.00 0.00 0.00 3.60
4811 5056 4.131596 TGGCAGCTTTAGAGTAAAAACGT 58.868 39.130 0.00 0.00 0.00 3.99
4812 5057 4.212636 TGGCAGCTTTAGAGTAAAAACGTC 59.787 41.667 0.00 0.00 0.00 4.34
4813 5058 4.212636 GGCAGCTTTAGAGTAAAAACGTCA 59.787 41.667 0.00 0.00 0.00 4.35
4814 5059 5.374898 GCAGCTTTAGAGTAAAAACGTCAG 58.625 41.667 0.00 0.00 0.00 3.51
4815 5060 5.614887 GCAGCTTTAGAGTAAAAACGTCAGG 60.615 44.000 0.00 0.00 0.00 3.86
4816 5061 4.995487 AGCTTTAGAGTAAAAACGTCAGGG 59.005 41.667 0.00 0.00 0.00 4.45
4817 5062 4.378149 GCTTTAGAGTAAAAACGTCAGGGC 60.378 45.833 0.00 0.00 0.00 5.19
4818 5063 1.792006 AGAGTAAAAACGTCAGGGCG 58.208 50.000 0.00 0.00 37.94 6.13
4819 5064 0.794473 GAGTAAAAACGTCAGGGCGG 59.206 55.000 0.00 0.00 35.98 6.13
4820 5065 0.107268 AGTAAAAACGTCAGGGCGGT 59.893 50.000 0.00 0.00 35.98 5.68
4821 5066 0.236449 GTAAAAACGTCAGGGCGGTG 59.764 55.000 0.00 0.00 35.98 4.94
4822 5067 0.179051 TAAAAACGTCAGGGCGGTGT 60.179 50.000 0.00 0.00 35.98 4.16
4823 5068 1.033202 AAAAACGTCAGGGCGGTGTT 61.033 50.000 0.00 0.00 35.98 3.32
4824 5069 0.179051 AAAACGTCAGGGCGGTGTTA 60.179 50.000 0.00 0.00 35.98 2.41
4825 5070 0.881600 AAACGTCAGGGCGGTGTTAC 60.882 55.000 0.00 0.00 35.98 2.50
4826 5071 1.751349 AACGTCAGGGCGGTGTTACT 61.751 55.000 0.00 0.00 35.98 2.24
4827 5072 1.005394 CGTCAGGGCGGTGTTACTT 60.005 57.895 0.00 0.00 0.00 2.24
4828 5073 1.012486 CGTCAGGGCGGTGTTACTTC 61.012 60.000 0.00 0.00 0.00 3.01
4829 5074 1.012486 GTCAGGGCGGTGTTACTTCG 61.012 60.000 0.00 0.00 0.00 3.79
4830 5075 1.005394 CAGGGCGGTGTTACTTCGT 60.005 57.895 0.00 0.00 0.00 3.85
4831 5076 1.005394 AGGGCGGTGTTACTTCGTG 60.005 57.895 0.00 0.00 0.00 4.35
4832 5077 2.674084 GGGCGGTGTTACTTCGTGC 61.674 63.158 0.00 0.00 0.00 5.34
4833 5078 2.674084 GGCGGTGTTACTTCGTGCC 61.674 63.158 0.00 0.00 0.00 5.01
4834 5079 1.957186 GCGGTGTTACTTCGTGCCA 60.957 57.895 0.00 0.00 0.00 4.92
4835 5080 1.857364 CGGTGTTACTTCGTGCCAC 59.143 57.895 0.00 0.00 0.00 5.01
4836 5081 0.876777 CGGTGTTACTTCGTGCCACA 60.877 55.000 0.00 0.00 0.00 4.17
4837 5082 0.584876 GGTGTTACTTCGTGCCACAC 59.415 55.000 0.00 0.00 37.59 3.82
4856 5101 4.973396 ACACGTGTGATGCTTATCATTTG 58.027 39.130 22.71 0.00 35.05 2.32
4857 5102 4.142622 ACACGTGTGATGCTTATCATTTGG 60.143 41.667 22.71 0.00 35.05 3.28
4858 5103 3.378112 ACGTGTGATGCTTATCATTTGGG 59.622 43.478 0.00 0.00 35.05 4.12
4859 5104 3.378112 CGTGTGATGCTTATCATTTGGGT 59.622 43.478 0.00 0.00 35.05 4.51
4860 5105 4.574421 CGTGTGATGCTTATCATTTGGGTA 59.426 41.667 0.00 0.00 35.05 3.69
4861 5106 5.065859 CGTGTGATGCTTATCATTTGGGTAA 59.934 40.000 0.00 0.00 35.05 2.85
4862 5107 6.404184 CGTGTGATGCTTATCATTTGGGTAAA 60.404 38.462 0.00 0.00 35.05 2.01
4863 5108 7.491682 GTGTGATGCTTATCATTTGGGTAAAT 58.508 34.615 0.00 0.00 36.97 1.40
4864 5109 8.629158 GTGTGATGCTTATCATTTGGGTAAATA 58.371 33.333 0.00 0.00 34.81 1.40
4865 5110 9.365906 TGTGATGCTTATCATTTGGGTAAATAT 57.634 29.630 0.00 0.00 34.81 1.28
5293 5538 1.271856 TCAAATACCGGAGTCAGCCA 58.728 50.000 9.46 0.00 0.00 4.75
5360 5605 6.405538 CCTAAATCCTGAGGAATATGAGCTC 58.594 44.000 4.76 6.82 34.34 4.09
5457 5702 6.002653 GAAGGCCTTCTTCTAAAAGGGATA 57.997 41.667 33.98 0.00 46.30 2.59
5480 5725 0.801251 CCTCCGCAGCTGAAAAAGAG 59.199 55.000 20.43 13.93 0.00 2.85
5506 5751 5.712152 AAATTCTGCAACACTTTAGAGGG 57.288 39.130 0.00 0.00 0.00 4.30
5510 5755 2.622942 CTGCAACACTTTAGAGGGCAAA 59.377 45.455 0.00 0.00 0.00 3.68
5591 5836 6.711194 TGTCGACCAGTTAAAATGAATTACCA 59.289 34.615 14.12 0.00 0.00 3.25
5595 5840 7.539034 ACCAGTTAAAATGAATTACCAAGCT 57.461 32.000 0.00 0.00 0.00 3.74
5627 5873 4.871933 TCTGAAGAGCATTGTACAGACA 57.128 40.909 0.00 0.00 31.02 3.41
5631 5877 6.378280 TCTGAAGAGCATTGTACAGACAGATA 59.622 38.462 0.00 0.00 36.76 1.98
5637 5883 7.223582 AGAGCATTGTACAGACAGATATTTTCG 59.776 37.037 0.00 0.00 36.76 3.46
5639 5885 7.334421 AGCATTGTACAGACAGATATTTTCGTT 59.666 33.333 0.00 0.00 36.76 3.85
5685 5931 3.679389 ACAGATTTCTAGCCACCAACTG 58.321 45.455 0.00 0.00 0.00 3.16
5695 5941 2.162681 GCCACCAACTGTGCTAGAAAT 58.837 47.619 0.00 0.00 44.01 2.17
5696 5942 2.095059 GCCACCAACTGTGCTAGAAATG 60.095 50.000 0.00 0.00 44.01 2.32
5697 5943 3.149196 CCACCAACTGTGCTAGAAATGT 58.851 45.455 0.00 0.00 44.01 2.71
5706 5952 7.308782 ACTGTGCTAGAAATGTGTATAAAGC 57.691 36.000 0.00 0.00 0.00 3.51
5725 5971 4.989875 AGCAAGCATCCAGTATATCCTT 57.010 40.909 0.00 0.00 0.00 3.36
5729 5975 5.049129 GCAAGCATCCAGTATATCCTTTCAC 60.049 44.000 0.00 0.00 0.00 3.18
5741 5987 1.898574 CTTTCACCCGGTGCTGCTT 60.899 57.895 13.19 0.00 32.98 3.91
5783 6029 6.348868 GGATTTCAGTCCATTCTGTGAACTTC 60.349 42.308 0.00 0.00 38.20 3.01
5851 6098 6.858478 GCAACCTGTTTAACTTCAAGAGATTC 59.142 38.462 0.00 0.00 0.00 2.52
5911 6163 6.799926 ACATAATGCGCATATTACATGACA 57.200 33.333 25.61 0.00 0.00 3.58
5931 6183 9.859427 CATGACACATAGTTGGATAAAAACAAT 57.141 29.630 0.00 0.00 0.00 2.71
5989 6241 7.962964 TCCACAGTTGAACTTTAACAGATAG 57.037 36.000 0.00 0.00 0.00 2.08
5990 6242 7.506114 TCCACAGTTGAACTTTAACAGATAGT 58.494 34.615 0.00 0.00 0.00 2.12
5991 6243 8.644216 TCCACAGTTGAACTTTAACAGATAGTA 58.356 33.333 0.00 0.00 0.00 1.82
5992 6244 8.709646 CCACAGTTGAACTTTAACAGATAGTAC 58.290 37.037 0.00 0.00 0.00 2.73
5993 6245 9.477484 CACAGTTGAACTTTAACAGATAGTACT 57.523 33.333 0.00 0.00 0.00 2.73
6018 6270 3.488363 AGTGGTTACTAGCCGAGGATAG 58.512 50.000 12.39 12.39 39.71 2.08
6033 6285 0.744414 GATAGCCCTTGAAGCGCACA 60.744 55.000 11.47 6.70 34.64 4.57
6043 6295 3.266541 TGAAGCGCACACAAATAACAG 57.733 42.857 11.47 0.00 0.00 3.16
6049 6301 3.793801 GCGCACACAAATAACAGGTTTCA 60.794 43.478 0.30 0.00 0.00 2.69
6051 6303 4.382457 CGCACACAAATAACAGGTTTCATG 59.618 41.667 0.00 0.00 0.00 3.07
6057 6309 9.044150 ACACAAATAACAGGTTTCATGATTTTG 57.956 29.630 0.00 0.00 0.00 2.44
6092 6344 7.637078 ATTCATTACGAAGGACCATACAATGGA 60.637 37.037 12.80 0.00 44.74 3.41
6135 6388 9.529325 TGTATAACTCGTCCATAAGAAGAAATG 57.471 33.333 0.00 0.00 32.26 2.32
6195 6448 2.976589 TCATCGCAATCAAGAAGCTCA 58.023 42.857 0.00 0.00 0.00 4.26
6244 6497 5.027737 CACCGAACATGCATACAACATTAC 58.972 41.667 0.00 0.00 0.00 1.89
6370 6623 8.768397 TCTCCTCAACAACTATAACACCATAAT 58.232 33.333 0.00 0.00 0.00 1.28
6398 6651 4.070716 GGTGAGATGCCAATAGAGAATGG 58.929 47.826 0.00 0.00 39.80 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.606961 CGCGCTTGGTGATGTGTGT 61.607 57.895 5.56 0.00 0.00 3.72
67 68 9.444600 AGAATTGTGACGTGTATATTTAAAGGT 57.555 29.630 0.00 0.00 0.00 3.50
149 150 0.107459 GGAGTTGGAGGTGATGAGCC 60.107 60.000 0.00 0.00 0.00 4.70
180 181 1.000618 GGAGGAGAACGAACGAAGGTT 59.999 52.381 0.14 0.00 39.63 3.50
243 244 4.460263 CTTCTAGAAGGAGCTAGCTCTCA 58.540 47.826 36.76 19.58 42.38 3.27
363 368 4.479158 AGCAATGGAAGGGTTTACTGAAA 58.521 39.130 0.00 0.00 0.00 2.69
402 420 1.442520 CGCTTGATGTTTGTGCCCG 60.443 57.895 0.00 0.00 0.00 6.13
419 437 3.939837 ATGGTGCACGGAGCTGACG 62.940 63.158 11.45 0.00 45.94 4.35
441 460 0.807496 CTCCAAAAGCAGTGCTAGGC 59.193 55.000 20.09 0.00 38.25 3.93
457 479 1.096416 AGTACTCGTACTGCTGCTCC 58.904 55.000 8.82 0.00 44.11 4.70
521 543 2.217750 TGACGGAAATGGTGTCAAGTG 58.782 47.619 0.00 0.00 39.50 3.16
604 629 1.376037 GAACGGAGGAGGGTGCAAG 60.376 63.158 0.00 0.00 0.00 4.01
636 661 1.572085 CCTCGCTTGTTCCTGCACTG 61.572 60.000 0.00 0.00 0.00 3.66
658 683 3.598678 GGAACGTGCGCCTTTAATC 57.401 52.632 4.18 0.00 0.00 1.75
811 838 1.562942 AGGAAGCAAGCATGGAGATCA 59.437 47.619 0.00 0.00 0.00 2.92
864 891 3.854784 GCTCAGCAATCAACCAACTGTTC 60.855 47.826 0.00 0.00 34.00 3.18
900 927 4.302559 AGTTTATCCCAAGGAACCTGTC 57.697 45.455 0.00 0.00 34.34 3.51
923 950 5.072329 AGTGAAGACTGGAGATCAAGGAAAA 59.928 40.000 0.00 0.00 0.00 2.29
947 981 1.681327 GAGAGCCGGTCACCTGGTA 60.681 63.158 1.90 0.00 0.00 3.25
976 1010 1.000163 CGCTACCCTATCTGCACGAAT 60.000 52.381 0.00 0.00 0.00 3.34
1120 1154 2.835431 ATCCCCGAGAGACTGCGG 60.835 66.667 6.41 6.41 46.80 5.69
1148 1182 4.803426 GCCTCTCCACCGTGCTCG 62.803 72.222 0.14 0.14 0.00 5.03
1177 1211 1.282248 ATTGTCACGACCGTTGCTCG 61.282 55.000 0.00 0.00 37.17 5.03
1265 1299 1.194121 TGTAGCAGCCAAGCAGGAGA 61.194 55.000 0.00 0.00 41.22 3.71
1266 1300 0.107312 ATGTAGCAGCCAAGCAGGAG 60.107 55.000 0.00 0.00 41.22 3.69
1326 1369 1.047801 CCTGAAAACCAACCAAGGGG 58.952 55.000 0.00 0.00 41.29 4.79
1329 1372 2.944129 TCCTCCTGAAAACCAACCAAG 58.056 47.619 0.00 0.00 0.00 3.61
1333 1376 3.084786 CCAGATCCTCCTGAAAACCAAC 58.915 50.000 0.00 0.00 36.29 3.77
1349 1392 3.181456 GGAGAAGATTAGCAGTGCCAGAT 60.181 47.826 12.58 3.13 0.00 2.90
1394 1437 1.078143 CACCAGCCCTAGCAGAACC 60.078 63.158 0.00 0.00 43.56 3.62
1406 1449 1.949525 TGCTCACTTTCTTTCACCAGC 59.050 47.619 0.00 0.00 0.00 4.85
1425 1468 6.932356 AGCAAAACACTGTATGATAGGATG 57.068 37.500 0.00 0.00 0.00 3.51
1441 1486 5.118510 CACCATCATAAAACCGAAGCAAAAC 59.881 40.000 0.00 0.00 0.00 2.43
1450 1496 4.414852 CAGAAAGCACCATCATAAAACCG 58.585 43.478 0.00 0.00 0.00 4.44
1452 1498 4.082026 AGCCAGAAAGCACCATCATAAAAC 60.082 41.667 0.00 0.00 34.23 2.43
1466 1512 3.548214 CGCATGATGAATCAGCCAGAAAG 60.548 47.826 0.00 0.00 40.64 2.62
1473 1519 0.661552 AGCACGCATGATGAATCAGC 59.338 50.000 0.00 0.00 40.64 4.26
1494 1540 1.521010 CTCAGATCACTGCCTGCGG 60.521 63.158 0.00 0.00 43.17 5.69
1495 1541 0.108472 TTCTCAGATCACTGCCTGCG 60.108 55.000 0.00 0.00 43.17 5.18
1506 1562 5.126061 ACAAACTGCACTTTGTTTCTCAGAT 59.874 36.000 15.98 0.00 40.72 2.90
1553 1609 2.316677 TGTACCCCATCCTTACCTCAGA 59.683 50.000 0.00 0.00 0.00 3.27
1572 1637 5.221803 GGGGATCATCTCTGAACATGTATGT 60.222 44.000 0.00 0.00 44.20 2.29
1576 1641 3.136077 CAGGGGATCATCTCTGAACATGT 59.864 47.826 0.00 0.00 34.37 3.21
1596 1661 9.346725 GAAGTAAATTTGAGCATCTTTTACCAG 57.653 33.333 0.00 0.00 36.86 4.00
1615 1680 4.202202 CCTGCAACCAAACCATGAAGTAAA 60.202 41.667 0.00 0.00 0.00 2.01
1652 1717 0.940126 GCACCTCATACCAAGCATCG 59.060 55.000 0.00 0.00 0.00 3.84
1721 1786 2.817396 GACCTCGGAAGCAGCAGC 60.817 66.667 0.00 0.00 42.56 5.25
1754 1819 0.676736 CTTCAGATACTCTCGGCCCC 59.323 60.000 0.00 0.00 0.00 5.80
1763 1828 5.657302 ACCGAATGACTAACCTTCAGATACT 59.343 40.000 0.00 0.00 0.00 2.12
1766 1831 5.657302 AGTACCGAATGACTAACCTTCAGAT 59.343 40.000 0.00 0.00 0.00 2.90
1808 1873 9.693157 GCACTAAATCATGAAATTTTACAATGC 57.307 29.630 0.00 5.36 31.50 3.56
1811 1876 9.979578 AGTGCACTAAATCATGAAATTTTACAA 57.020 25.926 20.16 0.00 31.50 2.41
1812 1877 9.409312 CAGTGCACTAAATCATGAAATTTTACA 57.591 29.630 21.20 0.00 31.50 2.41
1813 1878 9.624697 TCAGTGCACTAAATCATGAAATTTTAC 57.375 29.630 21.20 0.00 31.50 2.01
1916 1993 1.614317 GCACAATCCAAGTACCCAGCT 60.614 52.381 0.00 0.00 0.00 4.24
1918 1995 2.086869 CTGCACAATCCAAGTACCCAG 58.913 52.381 0.00 0.00 0.00 4.45
1938 2015 6.200475 GGTATCTGCGGAAGTACTTGATTAAC 59.800 42.308 14.14 5.27 0.00 2.01
2006 2083 3.587061 TCCTAAACTTGGGCTCATTGAGA 59.413 43.478 17.87 0.00 0.00 3.27
2012 2089 2.354704 CGTCATCCTAAACTTGGGCTCA 60.355 50.000 0.00 0.00 0.00 4.26
2043 2120 7.121759 TGCCCTTCTGAAATTAAGATCAAAGAG 59.878 37.037 0.00 0.00 0.00 2.85
2050 2127 5.196695 GGAGTGCCCTTCTGAAATTAAGAT 58.803 41.667 0.00 0.00 0.00 2.40
2158 2235 5.542251 AGAAGGGCCTTATACTTTGCAAAAA 59.458 36.000 20.97 4.83 0.00 1.94
2176 2253 6.753107 ATGTATTCCGTTTGTAAAGAAGGG 57.247 37.500 0.00 0.00 34.25 3.95
2178 2255 9.716507 CCATAATGTATTCCGTTTGTAAAGAAG 57.283 33.333 0.00 0.00 0.00 2.85
2179 2256 9.451002 TCCATAATGTATTCCGTTTGTAAAGAA 57.549 29.630 0.00 0.00 0.00 2.52
2180 2257 9.621629 ATCCATAATGTATTCCGTTTGTAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
2184 2261 8.995220 GCTAATCCATAATGTATTCCGTTTGTA 58.005 33.333 0.00 0.00 0.00 2.41
2186 2263 8.099364 AGCTAATCCATAATGTATTCCGTTTG 57.901 34.615 0.00 0.00 0.00 2.93
2188 2265 7.450074 TGAGCTAATCCATAATGTATTCCGTT 58.550 34.615 0.00 0.00 0.00 4.44
2189 2266 7.004555 TGAGCTAATCCATAATGTATTCCGT 57.995 36.000 0.00 0.00 0.00 4.69
2190 2267 9.599866 TTATGAGCTAATCCATAATGTATTCCG 57.400 33.333 2.34 0.00 32.24 4.30
2195 2272 9.100197 TGAGGTTATGAGCTAATCCATAATGTA 57.900 33.333 8.37 0.00 37.51 2.29
2196 2273 7.977818 TGAGGTTATGAGCTAATCCATAATGT 58.022 34.615 8.37 1.15 37.51 2.71
2197 2274 9.107177 GATGAGGTTATGAGCTAATCCATAATG 57.893 37.037 8.37 0.00 35.89 1.90
2204 2281 7.500559 AGTTTTGGATGAGGTTATGAGCTAATC 59.499 37.037 5.63 5.63 39.56 1.75
2205 2282 7.284034 CAGTTTTGGATGAGGTTATGAGCTAAT 59.716 37.037 0.00 0.00 32.79 1.73
2206 2283 6.599244 CAGTTTTGGATGAGGTTATGAGCTAA 59.401 38.462 0.00 0.00 32.79 3.09
2207 2284 6.070251 TCAGTTTTGGATGAGGTTATGAGCTA 60.070 38.462 0.00 0.00 32.79 3.32
2208 2285 4.946157 CAGTTTTGGATGAGGTTATGAGCT 59.054 41.667 0.00 0.00 36.03 4.09
2209 2286 4.943705 TCAGTTTTGGATGAGGTTATGAGC 59.056 41.667 0.00 0.00 0.00 4.26
2210 2287 6.656693 AGTTCAGTTTTGGATGAGGTTATGAG 59.343 38.462 0.00 0.00 0.00 2.90
2213 2290 7.690256 AGTAGTTCAGTTTTGGATGAGGTTAT 58.310 34.615 0.00 0.00 0.00 1.89
2280 2357 8.316946 TCAAGATGATAAGTCACTCAAACATCT 58.683 33.333 0.00 0.00 42.85 2.90
2305 2409 5.049129 GCATATCAACTCCCTGTAGCATTTC 60.049 44.000 0.00 0.00 0.00 2.17
2506 2610 6.421501 TCACAATAGCTGTTGAATGCAAAAAG 59.578 34.615 27.54 0.00 35.47 2.27
2775 2880 5.576447 TCTTCCTTTTCTTTTGGTGTGTC 57.424 39.130 0.00 0.00 0.00 3.67
2814 2921 4.093952 CTTTGCCGAGCTGCCGTG 62.094 66.667 0.00 0.00 0.00 4.94
2867 2974 1.134098 ACCTCAGTCTGTGGTGGTTTG 60.134 52.381 22.79 0.00 42.10 2.93
2900 3007 1.374947 GGAGGTGCTGCTTGGTACA 59.625 57.895 0.00 0.00 0.00 2.90
3062 3169 1.378514 GAAATCCCTGCCGGCTTCA 60.379 57.895 29.70 6.34 0.00 3.02
3116 3223 3.359523 GGTTTGGCGGGTCGGTTC 61.360 66.667 0.00 0.00 0.00 3.62
3177 3284 1.288127 GTGTTCGTAGTGAGGCGGT 59.712 57.895 0.00 0.00 0.00 5.68
3540 3647 4.162690 GTCCGCTCGGCCCAGATT 62.163 66.667 0.00 0.00 34.68 2.40
3984 4101 1.343821 CTAACATGTTCGCGACCGC 59.656 57.895 15.85 4.06 37.85 5.68
3985 4102 1.065358 AACTAACATGTTCGCGACCG 58.935 50.000 15.85 0.00 0.00 4.79
3986 4103 4.852609 AATAACTAACATGTTCGCGACC 57.147 40.909 15.85 0.70 0.00 4.79
3987 4104 6.301108 TCAAAATAACTAACATGTTCGCGAC 58.699 36.000 15.85 4.85 0.00 5.19
3988 4105 6.469139 TCAAAATAACTAACATGTTCGCGA 57.531 33.333 15.85 3.71 0.00 5.87
3989 4106 7.719689 AATCAAAATAACTAACATGTTCGCG 57.280 32.000 15.85 0.00 0.00 5.87
3990 4107 9.937577 GAAAATCAAAATAACTAACATGTTCGC 57.062 29.630 15.85 0.00 0.00 4.70
4122 4245 1.739562 CACGGCTGAGTTCTGCTCC 60.740 63.158 0.00 0.00 43.48 4.70
4133 4256 0.793478 CGTCGAAGAGTACACGGCTG 60.793 60.000 0.00 0.00 36.95 4.85
4134 4257 1.500844 CGTCGAAGAGTACACGGCT 59.499 57.895 0.00 0.00 36.95 5.52
4136 4259 1.862147 CGCGTCGAAGAGTACACGG 60.862 63.158 1.37 0.00 36.95 4.94
4141 4264 3.120385 TCGCCGCGTCGAAGAGTA 61.120 61.111 10.86 0.00 36.95 2.59
4152 4393 4.673441 ACATATTATCTATCTGTCGCCGC 58.327 43.478 0.00 0.00 0.00 6.53
4153 4394 7.247929 TCTACATATTATCTATCTGTCGCCG 57.752 40.000 0.00 0.00 0.00 6.46
4194 4435 8.289939 ACAGTACCGATTTAAATGTCTCTAGA 57.710 34.615 5.17 0.00 0.00 2.43
4311 4552 3.562182 TCTGACGCTTGTAGGGATGATA 58.438 45.455 0.00 0.00 31.91 2.15
4364 4605 1.713078 AGGAGTTGAATGGAAGGCCTT 59.287 47.619 20.65 20.65 34.31 4.35
4368 4609 1.555075 TCGGAGGAGTTGAATGGAAGG 59.445 52.381 0.00 0.00 0.00 3.46
4378 4619 1.550976 GACCTTGATGTCGGAGGAGTT 59.449 52.381 8.64 0.00 34.61 3.01
4467 4708 7.432148 TTGTTCATACTAGGCCTAGAAATCA 57.568 36.000 40.40 26.37 36.97 2.57
4493 4734 5.112686 GGAATTATATCCTCCTTGCGCTAG 58.887 45.833 12.15 12.15 36.50 3.42
4495 4736 3.617531 CGGAATTATATCCTCCTTGCGCT 60.618 47.826 9.73 0.00 37.34 5.92
4508 4749 2.609747 AGCAGGCTCCTCGGAATTATA 58.390 47.619 0.00 0.00 0.00 0.98
4580 4825 9.681692 GAGTATTATGCAATGCAACAATAATGA 57.318 29.630 21.81 6.41 43.62 2.57
4589 4834 4.144297 GGAGGGAGTATTATGCAATGCAA 58.856 43.478 13.45 0.00 43.62 4.08
4597 4842 6.415206 TTTAGGAACGGAGGGAGTATTATG 57.585 41.667 0.00 0.00 0.00 1.90
4625 4870 0.618458 TGTGGCACTTATCAGGGTCC 59.382 55.000 19.83 0.00 0.00 4.46
4626 4871 1.739067 GTGTGGCACTTATCAGGGTC 58.261 55.000 19.83 0.00 0.00 4.46
4627 4872 0.036388 CGTGTGGCACTTATCAGGGT 60.036 55.000 19.83 0.00 31.34 4.34
4628 4873 0.036388 ACGTGTGGCACTTATCAGGG 60.036 55.000 19.83 1.75 31.34 4.45
4629 4874 1.078709 CACGTGTGGCACTTATCAGG 58.921 55.000 19.83 6.20 31.34 3.86
4630 4875 1.460743 CACACGTGTGGCACTTATCAG 59.539 52.381 35.65 10.09 42.10 2.90
4631 4876 1.507562 CACACGTGTGGCACTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
4646 4891 0.387239 GGAATTGCTTCGTGCCACAC 60.387 55.000 0.00 0.00 42.00 3.82
4647 4892 1.851021 CGGAATTGCTTCGTGCCACA 61.851 55.000 0.00 0.00 42.00 4.17
4648 4893 1.154225 CGGAATTGCTTCGTGCCAC 60.154 57.895 0.00 0.00 42.00 5.01
4649 4894 2.976840 GCGGAATTGCTTCGTGCCA 61.977 57.895 0.00 0.00 42.00 4.92
4650 4895 2.202479 GCGGAATTGCTTCGTGCC 60.202 61.111 0.00 0.00 42.00 5.01
4651 4896 2.870372 AGCGGAATTGCTTCGTGC 59.130 55.556 0.00 0.00 44.46 5.34
4658 4903 0.517316 AAACGTCAGAGCGGAATTGC 59.483 50.000 0.00 0.00 35.98 3.56
4659 4904 2.969443 AAAACGTCAGAGCGGAATTG 57.031 45.000 0.00 0.00 35.98 2.32
4676 4921 6.107343 GGGTAACTAAACTTGCCAACAAAAA 58.893 36.000 0.00 0.00 34.74 1.94
4677 4922 5.662456 GGGTAACTAAACTTGCCAACAAAA 58.338 37.500 0.00 0.00 34.74 2.44
4678 4923 4.202030 CGGGTAACTAAACTTGCCAACAAA 60.202 41.667 0.00 0.00 34.74 2.83
4679 4924 3.315749 CGGGTAACTAAACTTGCCAACAA 59.684 43.478 0.00 0.00 0.00 2.83
4680 4925 2.879646 CGGGTAACTAAACTTGCCAACA 59.120 45.455 0.00 0.00 0.00 3.33
4681 4926 3.140623 TCGGGTAACTAAACTTGCCAAC 58.859 45.455 0.00 0.00 0.00 3.77
4682 4927 3.404899 CTCGGGTAACTAAACTTGCCAA 58.595 45.455 0.00 0.00 0.00 4.52
4683 4928 2.289819 CCTCGGGTAACTAAACTTGCCA 60.290 50.000 0.00 0.00 0.00 4.92
4684 4929 2.027837 TCCTCGGGTAACTAAACTTGCC 60.028 50.000 0.00 0.00 0.00 4.52
4685 4930 3.323751 TCCTCGGGTAACTAAACTTGC 57.676 47.619 0.00 0.00 0.00 4.01
4686 4931 4.189231 CCATCCTCGGGTAACTAAACTTG 58.811 47.826 0.00 0.00 0.00 3.16
4687 4932 3.370209 GCCATCCTCGGGTAACTAAACTT 60.370 47.826 0.00 0.00 0.00 2.66
4688 4933 2.169978 GCCATCCTCGGGTAACTAAACT 59.830 50.000 0.00 0.00 0.00 2.66
4689 4934 2.093341 TGCCATCCTCGGGTAACTAAAC 60.093 50.000 0.00 0.00 0.00 2.01
4690 4935 2.189676 TGCCATCCTCGGGTAACTAAA 58.810 47.619 0.00 0.00 0.00 1.85
4691 4936 1.868713 TGCCATCCTCGGGTAACTAA 58.131 50.000 0.00 0.00 0.00 2.24
4692 4937 1.483415 GTTGCCATCCTCGGGTAACTA 59.517 52.381 5.34 0.00 44.53 2.24
4693 4938 0.252197 GTTGCCATCCTCGGGTAACT 59.748 55.000 5.34 0.00 44.53 2.24
4694 4939 2.776659 GTTGCCATCCTCGGGTAAC 58.223 57.895 0.00 0.00 42.37 2.50
4695 4940 0.988832 AAGTTGCCATCCTCGGGTAA 59.011 50.000 0.00 0.00 0.00 2.85
4696 4941 0.988832 AAAGTTGCCATCCTCGGGTA 59.011 50.000 0.00 0.00 0.00 3.69
4697 4942 0.988832 TAAAGTTGCCATCCTCGGGT 59.011 50.000 0.00 0.00 0.00 5.28
4698 4943 1.065418 ACTAAAGTTGCCATCCTCGGG 60.065 52.381 0.00 0.00 0.00 5.14
4699 4944 2.403252 ACTAAAGTTGCCATCCTCGG 57.597 50.000 0.00 0.00 0.00 4.63
4710 4955 3.636300 TGCCATGCTTCACAACTAAAGTT 59.364 39.130 0.00 0.00 39.12 2.66
4711 4956 3.221771 TGCCATGCTTCACAACTAAAGT 58.778 40.909 0.00 0.00 0.00 2.66
4712 4957 3.921119 TGCCATGCTTCACAACTAAAG 57.079 42.857 0.00 0.00 0.00 1.85
4713 4958 3.976169 GTTGCCATGCTTCACAACTAAA 58.024 40.909 0.00 0.00 39.39 1.85
4714 4959 3.641437 GTTGCCATGCTTCACAACTAA 57.359 42.857 0.00 0.00 39.39 2.24
4716 4961 1.696063 AGTTGCCATGCTTCACAACT 58.304 45.000 9.70 9.70 45.86 3.16
4717 4962 2.514205 AAGTTGCCATGCTTCACAAC 57.486 45.000 0.00 0.00 42.08 3.32
4718 4963 2.694628 AGAAAGTTGCCATGCTTCACAA 59.305 40.909 0.00 0.00 0.00 3.33
4719 4964 2.034939 CAGAAAGTTGCCATGCTTCACA 59.965 45.455 0.00 0.00 0.00 3.58
4720 4965 2.035066 ACAGAAAGTTGCCATGCTTCAC 59.965 45.455 0.00 0.00 0.00 3.18
4721 4966 2.309613 ACAGAAAGTTGCCATGCTTCA 58.690 42.857 0.00 0.00 0.00 3.02
4722 4967 3.375782 AACAGAAAGTTGCCATGCTTC 57.624 42.857 0.00 0.00 39.49 3.86
4723 4968 3.460103 CAAACAGAAAGTTGCCATGCTT 58.540 40.909 0.00 0.00 41.19 3.91
4724 4969 2.224113 CCAAACAGAAAGTTGCCATGCT 60.224 45.455 0.00 0.00 41.19 3.79
4725 4970 2.137523 CCAAACAGAAAGTTGCCATGC 58.862 47.619 0.00 0.00 41.19 4.06
4726 4971 3.731652 TCCAAACAGAAAGTTGCCATG 57.268 42.857 0.00 0.00 41.19 3.66
4727 4972 4.961438 AATCCAAACAGAAAGTTGCCAT 57.039 36.364 0.00 0.00 41.19 4.40
4728 4973 4.751767 AAATCCAAACAGAAAGTTGCCA 57.248 36.364 0.00 0.00 41.19 4.92
4729 4974 4.273235 CCAAAATCCAAACAGAAAGTTGCC 59.727 41.667 0.00 0.00 41.19 4.52
4730 4975 5.115480 TCCAAAATCCAAACAGAAAGTTGC 58.885 37.500 0.00 0.00 41.19 4.17
4731 4976 6.203338 CCATCCAAAATCCAAACAGAAAGTTG 59.797 38.462 0.00 0.00 41.19 3.16
4732 4977 6.290605 CCATCCAAAATCCAAACAGAAAGTT 58.709 36.000 0.00 0.00 43.89 2.66
4733 4978 5.742838 GCCATCCAAAATCCAAACAGAAAGT 60.743 40.000 0.00 0.00 0.00 2.66
4734 4979 4.692155 GCCATCCAAAATCCAAACAGAAAG 59.308 41.667 0.00 0.00 0.00 2.62
4735 4980 4.102210 TGCCATCCAAAATCCAAACAGAAA 59.898 37.500 0.00 0.00 0.00 2.52
4736 4981 3.645212 TGCCATCCAAAATCCAAACAGAA 59.355 39.130 0.00 0.00 0.00 3.02
4737 4982 3.237746 TGCCATCCAAAATCCAAACAGA 58.762 40.909 0.00 0.00 0.00 3.41
4738 4983 3.681593 TGCCATCCAAAATCCAAACAG 57.318 42.857 0.00 0.00 0.00 3.16
4739 4984 3.390639 ACTTGCCATCCAAAATCCAAACA 59.609 39.130 0.00 0.00 31.94 2.83
4740 4985 4.006780 ACTTGCCATCCAAAATCCAAAC 57.993 40.909 0.00 0.00 31.94 2.93
4741 4986 5.483231 TGATACTTGCCATCCAAAATCCAAA 59.517 36.000 0.00 0.00 31.94 3.28
4742 4987 5.022122 TGATACTTGCCATCCAAAATCCAA 58.978 37.500 0.00 0.00 31.94 3.53
4743 4988 4.608269 TGATACTTGCCATCCAAAATCCA 58.392 39.130 0.00 0.00 31.94 3.41
4744 4989 4.646492 ACTGATACTTGCCATCCAAAATCC 59.354 41.667 0.00 0.00 31.94 3.01
4745 4990 5.841957 ACTGATACTTGCCATCCAAAATC 57.158 39.130 0.00 0.00 31.94 2.17
4746 4991 6.610075 AAACTGATACTTGCCATCCAAAAT 57.390 33.333 0.00 0.00 31.94 1.82
4747 4992 6.418057 AAAACTGATACTTGCCATCCAAAA 57.582 33.333 0.00 0.00 31.94 2.44
4748 4993 6.418057 AAAAACTGATACTTGCCATCCAAA 57.582 33.333 0.00 0.00 31.94 3.28
4780 5025 3.417101 TCTAAAGCTGCCATCCGAAAAA 58.583 40.909 0.00 0.00 0.00 1.94
4781 5026 3.009723 CTCTAAAGCTGCCATCCGAAAA 58.990 45.455 0.00 0.00 0.00 2.29
4782 5027 2.027192 ACTCTAAAGCTGCCATCCGAAA 60.027 45.455 0.00 0.00 0.00 3.46
4783 5028 1.555075 ACTCTAAAGCTGCCATCCGAA 59.445 47.619 0.00 0.00 0.00 4.30
4784 5029 1.195115 ACTCTAAAGCTGCCATCCGA 58.805 50.000 0.00 0.00 0.00 4.55
4785 5030 2.890808 TACTCTAAAGCTGCCATCCG 57.109 50.000 0.00 0.00 0.00 4.18
4786 5031 5.641709 GTTTTTACTCTAAAGCTGCCATCC 58.358 41.667 0.00 0.00 0.00 3.51
4787 5032 5.106673 ACGTTTTTACTCTAAAGCTGCCATC 60.107 40.000 0.00 0.00 0.00 3.51
4788 5033 4.760204 ACGTTTTTACTCTAAAGCTGCCAT 59.240 37.500 0.00 0.00 0.00 4.40
4789 5034 4.131596 ACGTTTTTACTCTAAAGCTGCCA 58.868 39.130 0.00 0.00 0.00 4.92
4790 5035 4.212636 TGACGTTTTTACTCTAAAGCTGCC 59.787 41.667 0.00 0.00 0.00 4.85
4791 5036 5.338614 TGACGTTTTTACTCTAAAGCTGC 57.661 39.130 0.00 0.00 0.00 5.25
4792 5037 5.107065 CCCTGACGTTTTTACTCTAAAGCTG 60.107 44.000 0.00 0.00 0.00 4.24
4793 5038 4.995487 CCCTGACGTTTTTACTCTAAAGCT 59.005 41.667 0.00 0.00 0.00 3.74
4794 5039 4.378149 GCCCTGACGTTTTTACTCTAAAGC 60.378 45.833 0.00 0.00 0.00 3.51
4795 5040 4.143179 CGCCCTGACGTTTTTACTCTAAAG 60.143 45.833 0.00 0.00 0.00 1.85
4796 5041 3.742369 CGCCCTGACGTTTTTACTCTAAA 59.258 43.478 0.00 0.00 0.00 1.85
4797 5042 3.319755 CGCCCTGACGTTTTTACTCTAA 58.680 45.455 0.00 0.00 0.00 2.10
4798 5043 2.353011 CCGCCCTGACGTTTTTACTCTA 60.353 50.000 0.00 0.00 0.00 2.43
4799 5044 1.607251 CCGCCCTGACGTTTTTACTCT 60.607 52.381 0.00 0.00 0.00 3.24
4800 5045 0.794473 CCGCCCTGACGTTTTTACTC 59.206 55.000 0.00 0.00 0.00 2.59
4801 5046 0.107268 ACCGCCCTGACGTTTTTACT 59.893 50.000 0.00 0.00 0.00 2.24
4802 5047 0.236449 CACCGCCCTGACGTTTTTAC 59.764 55.000 0.00 0.00 0.00 2.01
4803 5048 0.179051 ACACCGCCCTGACGTTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
4804 5049 1.033202 AACACCGCCCTGACGTTTTT 61.033 50.000 0.00 0.00 0.00 1.94
4805 5050 0.179051 TAACACCGCCCTGACGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
4806 5051 0.881600 GTAACACCGCCCTGACGTTT 60.882 55.000 0.00 0.00 0.00 3.60
4807 5052 1.301165 GTAACACCGCCCTGACGTT 60.301 57.895 0.00 0.00 0.00 3.99
4808 5053 1.751349 AAGTAACACCGCCCTGACGT 61.751 55.000 0.00 0.00 0.00 4.34
4809 5054 1.005394 AAGTAACACCGCCCTGACG 60.005 57.895 0.00 0.00 0.00 4.35
4810 5055 1.012486 CGAAGTAACACCGCCCTGAC 61.012 60.000 0.00 0.00 0.00 3.51
4811 5056 1.290955 CGAAGTAACACCGCCCTGA 59.709 57.895 0.00 0.00 0.00 3.86
4812 5057 1.005394 ACGAAGTAACACCGCCCTG 60.005 57.895 0.00 0.00 41.94 4.45
4813 5058 1.005394 CACGAAGTAACACCGCCCT 60.005 57.895 0.00 0.00 41.61 5.19
4814 5059 2.674084 GCACGAAGTAACACCGCCC 61.674 63.158 0.00 0.00 41.61 6.13
4815 5060 2.674084 GGCACGAAGTAACACCGCC 61.674 63.158 0.00 0.00 41.61 6.13
4816 5061 1.957186 TGGCACGAAGTAACACCGC 60.957 57.895 0.00 0.00 41.61 5.68
4817 5062 0.876777 TGTGGCACGAAGTAACACCG 60.877 55.000 13.77 0.00 41.61 4.94
4818 5063 0.584876 GTGTGGCACGAAGTAACACC 59.415 55.000 13.77 0.00 41.61 4.16
4829 5074 1.785041 AAGCATCACACGTGTGGCAC 61.785 55.000 39.88 29.56 45.65 5.01
4830 5075 0.250081 TAAGCATCACACGTGTGGCA 60.250 50.000 39.88 26.81 45.65 4.92
4831 5076 1.062587 GATAAGCATCACACGTGTGGC 59.937 52.381 39.88 34.94 45.65 5.01
4832 5077 2.345876 TGATAAGCATCACACGTGTGG 58.654 47.619 39.88 28.61 45.65 4.17
4833 5078 4.604843 AATGATAAGCATCACACGTGTG 57.395 40.909 37.04 37.04 43.89 3.82
4834 5079 4.142622 CCAAATGATAAGCATCACACGTGT 60.143 41.667 17.22 17.22 43.89 4.49
4835 5080 4.345288 CCAAATGATAAGCATCACACGTG 58.655 43.478 15.48 15.48 43.89 4.49
4836 5081 3.378112 CCCAAATGATAAGCATCACACGT 59.622 43.478 0.00 0.00 43.89 4.49
4837 5082 3.378112 ACCCAAATGATAAGCATCACACG 59.622 43.478 0.00 0.00 43.89 4.49
4838 5083 4.989279 ACCCAAATGATAAGCATCACAC 57.011 40.909 0.00 0.00 43.89 3.82
4839 5084 7.658525 ATTTACCCAAATGATAAGCATCACA 57.341 32.000 0.00 0.00 43.89 3.58
4844 5089 8.802267 GGCTTATATTTACCCAAATGATAAGCA 58.198 33.333 23.69 0.00 43.37 3.91
4845 5090 9.025041 AGGCTTATATTTACCCAAATGATAAGC 57.975 33.333 19.84 19.84 42.54 3.09
4864 5109 9.578576 TGCATCTGAATCTATAAAAAGGCTTAT 57.421 29.630 0.00 0.00 0.00 1.73
4865 5110 8.978874 TGCATCTGAATCTATAAAAAGGCTTA 57.021 30.769 0.00 0.00 0.00 3.09
4866 5111 7.776969 TCTGCATCTGAATCTATAAAAAGGCTT 59.223 33.333 0.00 0.00 0.00 4.35
4884 5129 2.294791 GCTCCGTATGTAGTCTGCATCT 59.705 50.000 6.71 0.00 0.00 2.90
4885 5130 2.034685 TGCTCCGTATGTAGTCTGCATC 59.965 50.000 6.71 0.00 0.00 3.91
4934 5179 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
4942 5187 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
4980 5225 7.510407 ACTCCCTCTGTTTCTAAATATAAGCC 58.490 38.462 0.00 0.00 0.00 4.35
5271 5516 2.213499 GCTGACTCCGGTATTTGATGG 58.787 52.381 0.00 0.00 0.00 3.51
5293 5538 2.202932 GCGGCGGTGTGATGATCT 60.203 61.111 9.78 0.00 0.00 2.75
5360 5605 0.999712 ACAGTGGGTCTAATTGGGGG 59.000 55.000 0.00 0.00 0.00 5.40
5480 5725 6.749118 CCTCTAAAGTGTTGCAGAATTTATGC 59.251 38.462 9.03 9.03 44.11 3.14
5506 5751 4.537936 AGACTTCGTTTCTCACTTTTGC 57.462 40.909 0.00 0.00 0.00 3.68
5510 5755 5.572126 GCGTAATAGACTTCGTTTCTCACTT 59.428 40.000 0.00 0.00 0.00 3.16
5591 5836 4.357325 TCTTCAGATCCTTGGACTAGCTT 58.643 43.478 0.00 0.00 0.00 3.74
5595 5840 3.713003 TGCTCTTCAGATCCTTGGACTA 58.287 45.455 0.00 0.00 0.00 2.59
5631 5877 8.364129 AGCATTTGTGTAATTCAAACGAAAAT 57.636 26.923 0.00 0.00 37.56 1.82
5685 5931 6.688813 GCTTGCTTTATACACATTTCTAGCAC 59.311 38.462 0.00 0.00 37.14 4.40
5695 5941 4.588899 ACTGGATGCTTGCTTTATACACA 58.411 39.130 0.00 0.00 0.00 3.72
5696 5942 6.867662 ATACTGGATGCTTGCTTTATACAC 57.132 37.500 0.00 0.00 0.00 2.90
5697 5943 7.824289 GGATATACTGGATGCTTGCTTTATACA 59.176 37.037 0.00 0.00 0.00 2.29
5706 5952 5.471456 GGTGAAAGGATATACTGGATGCTTG 59.529 44.000 0.00 0.00 35.42 4.01
5725 5971 1.302192 GTAAGCAGCACCGGGTGAA 60.302 57.895 30.65 5.13 45.29 3.18
5729 5975 1.816074 TTTTAGTAAGCAGCACCGGG 58.184 50.000 6.32 0.00 0.00 5.73
5741 5987 8.328758 ACTGAAATCCATCCTGTGATTTTAGTA 58.671 33.333 16.09 0.00 39.99 1.82
5798 6044 4.368315 CCCTTTTAGCACTTTTTGACACC 58.632 43.478 0.00 0.00 0.00 4.16
5799 6045 4.098807 TCCCCTTTTAGCACTTTTTGACAC 59.901 41.667 0.00 0.00 0.00 3.67
5800 6046 4.098807 GTCCCCTTTTAGCACTTTTTGACA 59.901 41.667 0.00 0.00 0.00 3.58
5801 6047 4.500887 GGTCCCCTTTTAGCACTTTTTGAC 60.501 45.833 0.00 0.00 0.00 3.18
5802 6048 3.639561 GGTCCCCTTTTAGCACTTTTTGA 59.360 43.478 0.00 0.00 0.00 2.69
5813 6060 1.075305 GGTTGCGGGTCCCCTTTTA 59.925 57.895 1.00 0.00 0.00 1.52
5826 6073 5.751243 TCTCTTGAAGTTAAACAGGTTGC 57.249 39.130 0.00 0.00 0.00 4.17
5860 6109 9.319143 CATATAATTTCTCTTGAAGTTCTCCGT 57.681 33.333 4.17 0.00 34.63 4.69
5896 6148 6.423604 TCCAACTATGTGTCATGTAATATGCG 59.576 38.462 0.00 0.00 0.00 4.73
5897 6149 7.728847 TCCAACTATGTGTCATGTAATATGC 57.271 36.000 0.00 0.00 0.00 3.14
5989 6241 4.878397 TCGGCTAGTAACCACTCTTAGTAC 59.122 45.833 0.00 0.00 36.14 2.73
5990 6242 5.102953 TCGGCTAGTAACCACTCTTAGTA 57.897 43.478 0.00 0.00 36.14 1.82
5991 6243 3.946558 CTCGGCTAGTAACCACTCTTAGT 59.053 47.826 0.00 0.00 36.14 2.24
5992 6244 3.315749 CCTCGGCTAGTAACCACTCTTAG 59.684 52.174 0.00 0.00 36.14 2.18
5993 6245 3.054139 TCCTCGGCTAGTAACCACTCTTA 60.054 47.826 0.00 0.00 36.14 2.10
6033 6285 9.829507 TTCAAAATCATGAAACCTGTTATTTGT 57.170 25.926 0.00 0.00 36.42 2.83
6057 6309 8.889717 TGGTCCTTCGTAATGAATTCTATTTTC 58.110 33.333 7.05 2.60 35.63 2.29
6180 6433 9.230932 GTTCTAATATTTGAGCTTCTTGATTGC 57.769 33.333 6.52 0.00 0.00 3.56
6283 6536 5.414789 TGTCCGACCTCAAGAATTATTCA 57.585 39.130 7.74 0.00 0.00 2.57
6327 6580 8.821894 GTTGAGGAGATTACAAATCATACTGAC 58.178 37.037 2.74 0.00 0.00 3.51
6370 6623 2.905415 ATTGGCATCTCACCTTGGAA 57.095 45.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.