Multiple sequence alignment - TraesCS6D01G216200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G216200 chr6D 100.000 3410 0 0 1 3410 306133961 306137370 0.000000e+00 6298
1 TraesCS6D01G216200 chr6D 88.645 502 37 18 2459 2950 306136910 306136419 8.150000e-166 593
2 TraesCS6D01G216200 chr6A 86.852 2548 185 58 1 2453 441495878 441498370 0.000000e+00 2712
3 TraesCS6D01G216200 chr6A 87.218 399 31 6 2763 3145 441498779 441499173 1.450000e-118 436
4 TraesCS6D01G216200 chr6A 94.762 210 10 1 3201 3410 441499174 441499382 3.280000e-85 326
5 TraesCS6D01G216200 chr6B 85.763 1756 148 41 1 1709 473059940 473061640 0.000000e+00 1764
6 TraesCS6D01G216200 chr6B 95.520 759 26 4 1707 2458 473061731 473062488 0.000000e+00 1206
7 TraesCS6D01G216200 chr6B 87.683 479 24 9 2965 3410 473067021 473067497 3.010000e-145 525
8 TraesCS6D01G216200 chr6B 94.408 304 16 1 2459 2762 473062903 473062601 1.850000e-127 466
9 TraesCS6D01G216200 chr6B 95.775 213 9 0 2761 2973 473062714 473062926 9.060000e-91 344
10 TraesCS6D01G216200 chr3A 96.907 97 1 2 887 982 20098712 20098617 9.790000e-36 161
11 TraesCS6D01G216200 chr1A 93.269 104 4 3 877 979 531051432 531051533 2.120000e-32 150
12 TraesCS6D01G216200 chr3D 93.878 98 3 3 884 979 16379026 16379122 9.860000e-31 145
13 TraesCS6D01G216200 chr3D 95.556 90 1 1 893 979 546330216 546330127 1.280000e-29 141
14 TraesCS6D01G216200 chr1B 93.878 98 3 3 883 979 583974447 583974542 9.860000e-31 145
15 TraesCS6D01G216200 chr3B 91.589 107 4 5 875 981 723273031 723272930 3.550000e-30 143
16 TraesCS6D01G216200 chr7A 92.929 99 3 3 893 991 677938928 677939022 1.280000e-29 141
17 TraesCS6D01G216200 chr7A 98.214 56 1 0 3355 3410 269102218 269102273 7.790000e-17 99
18 TraesCS6D01G216200 chr7D 100.000 56 0 0 3355 3410 252063076 252063021 1.670000e-18 104
19 TraesCS6D01G216200 chr5D 98.276 58 1 0 3353 3410 402976882 402976825 6.020000e-18 102
20 TraesCS6D01G216200 chr5D 98.214 56 1 0 3355 3410 402976616 402976671 7.790000e-17 99
21 TraesCS6D01G216200 chr7B 98.246 57 1 0 3354 3410 228827723 228827667 2.170000e-17 100
22 TraesCS6D01G216200 chr5A 98.246 57 1 0 3354 3410 510463901 510463957 2.170000e-17 100
23 TraesCS6D01G216200 chr5A 98.246 57 1 0 3354 3410 510464180 510464124 2.170000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G216200 chr6D 306133961 306137370 3409 False 6298.000000 6298 100.000000 1 3410 1 chr6D.!!$F1 3409
1 TraesCS6D01G216200 chr6A 441495878 441499382 3504 False 1158.000000 2712 89.610667 1 3410 3 chr6A.!!$F1 3409
2 TraesCS6D01G216200 chr6B 473059940 473062926 2986 False 1104.666667 1764 92.352667 1 2973 3 chr6B.!!$F2 2972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 794 0.463474 GAGACCCAGCAGAAGGATGC 60.463 60.0 0.0 0.0 46.88 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 2821 0.109597 GTCCAGCCGCATTTTCTGTG 60.11 55.0 0.0 0.0 35.02 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 0.668401 CACATCTCAGAGCACACGCA 60.668 55.000 0.00 0.00 42.27 5.24
138 146 2.889503 GCTCGCAGCTCGCTGATT 60.890 61.111 22.09 0.00 46.30 2.57
519 567 2.828128 GCGCCAGTGGATAAGCTGC 61.828 63.158 15.20 1.64 0.00 5.25
520 568 1.450134 CGCCAGTGGATAAGCTGCA 60.450 57.895 15.20 0.00 0.00 4.41
522 570 1.396653 GCCAGTGGATAAGCTGCATT 58.603 50.000 15.20 0.00 0.00 3.56
648 723 1.269051 CCTGAAAAGCCGTGTCCAAAC 60.269 52.381 0.00 0.00 0.00 2.93
679 754 3.042887 GGTTTTCGTGCTGTGTGAATTC 58.957 45.455 0.00 0.00 0.00 2.17
680 755 3.488384 GGTTTTCGTGCTGTGTGAATTCA 60.488 43.478 3.38 3.38 0.00 2.57
688 763 1.808945 CTGTGTGAATTCACCCTCTGC 59.191 52.381 30.66 16.12 45.88 4.26
698 773 2.151202 TCACCCTCTGCGTCAAATTTC 58.849 47.619 0.00 0.00 0.00 2.17
709 784 2.160417 CGTCAAATTTCTGAGACCCAGC 59.840 50.000 0.00 0.00 42.62 4.85
719 794 0.463474 GAGACCCAGCAGAAGGATGC 60.463 60.000 0.00 0.00 46.88 3.91
739 814 2.855963 GCATGTTGGATTTGCTCGAATG 59.144 45.455 0.00 0.00 33.61 2.67
740 815 3.427909 GCATGTTGGATTTGCTCGAATGA 60.428 43.478 0.00 0.00 33.61 2.57
755 830 5.453587 GCTCGAATGACAATGTTTTATCTGC 59.546 40.000 0.00 0.00 0.00 4.26
760 835 6.949352 ATGACAATGTTTTATCTGCCTAGG 57.051 37.500 3.67 3.67 0.00 3.02
761 836 5.815581 TGACAATGTTTTATCTGCCTAGGT 58.184 37.500 11.31 0.00 0.00 3.08
762 837 6.953101 TGACAATGTTTTATCTGCCTAGGTA 58.047 36.000 11.31 4.69 0.00 3.08
763 838 7.573710 TGACAATGTTTTATCTGCCTAGGTAT 58.426 34.615 11.31 4.72 0.00 2.73
765 840 9.555727 GACAATGTTTTATCTGCCTAGGTATAA 57.444 33.333 11.31 9.52 0.00 0.98
775 854 6.759272 TCTGCCTAGGTATAATCAACATGAC 58.241 40.000 11.31 0.00 0.00 3.06
786 865 1.878734 TCAACATGACGAGCATTTGCA 59.121 42.857 0.00 0.00 45.16 4.08
797 876 2.729882 GAGCATTTGCAGCAAAGTGAAG 59.270 45.455 24.39 12.93 45.16 3.02
822 901 6.145534 GCATGATGCAGATTTTTACCATGATG 59.854 38.462 13.36 0.00 44.26 3.07
823 902 7.430441 CATGATGCAGATTTTTACCATGATGA 58.570 34.615 0.00 0.00 31.88 2.92
829 908 6.681368 GCAGATTTTTACCATGATGAGGTTCC 60.681 42.308 0.00 0.00 40.54 3.62
832 921 4.666412 TTTACCATGATGAGGTTCCCAA 57.334 40.909 0.00 0.00 40.54 4.12
855 944 6.418585 ACTGGAACTAAATAAACGCTAAGC 57.581 37.500 0.00 0.00 0.00 3.09
856 945 5.935789 ACTGGAACTAAATAAACGCTAAGCA 59.064 36.000 0.00 0.00 0.00 3.91
858 947 6.837992 TGGAACTAAATAAACGCTAAGCAAG 58.162 36.000 0.00 0.00 0.00 4.01
868 957 4.258702 ACGCTAAGCAAGGACATATAGG 57.741 45.455 0.00 0.00 0.00 2.57
869 958 3.895656 ACGCTAAGCAAGGACATATAGGA 59.104 43.478 0.00 0.00 0.00 2.94
870 959 4.021894 ACGCTAAGCAAGGACATATAGGAG 60.022 45.833 0.00 0.00 0.00 3.69
871 960 4.218635 CGCTAAGCAAGGACATATAGGAGA 59.781 45.833 0.00 0.00 0.00 3.71
873 962 6.162777 GCTAAGCAAGGACATATAGGAGAAG 58.837 44.000 0.00 0.00 0.00 2.85
874 963 6.015010 GCTAAGCAAGGACATATAGGAGAAGA 60.015 42.308 0.00 0.00 0.00 2.87
878 967 7.810260 AGCAAGGACATATAGGAGAAGATTTT 58.190 34.615 0.00 0.00 0.00 1.82
879 968 8.938883 AGCAAGGACATATAGGAGAAGATTTTA 58.061 33.333 0.00 0.00 0.00 1.52
881 970 9.197694 CAAGGACATATAGGAGAAGATTTTACG 57.802 37.037 0.00 0.00 0.00 3.18
882 971 8.707796 AGGACATATAGGAGAAGATTTTACGA 57.292 34.615 0.00 0.00 0.00 3.43
884 973 9.194271 GGACATATAGGAGAAGATTTTACGAAC 57.806 37.037 0.00 0.00 0.00 3.95
891 980 5.390567 GGAGAAGATTTTACGAACAACGCAT 60.391 40.000 0.00 0.00 46.94 4.73
969 1058 2.954020 ATCCACGCTCACCGCATACG 62.954 60.000 0.00 0.00 41.76 3.06
971 1060 2.092291 CACGCTCACCGCATACGTT 61.092 57.895 0.00 0.00 41.76 3.99
1013 1103 8.025270 TCCGAAAATTCCAGGTATATACTTGA 57.975 34.615 22.78 7.54 35.55 3.02
1081 1175 1.893210 CGTCTTCCTTCTCCACCTCCT 60.893 57.143 0.00 0.00 0.00 3.69
1093 1187 0.670546 CACCTCCTACCGCAACACAG 60.671 60.000 0.00 0.00 0.00 3.66
1116 1210 1.654220 CCACAACTTCCAGCAACGG 59.346 57.895 0.00 0.00 0.00 4.44
1143 1237 9.999009 CGTAAGTTCTACCTTTTCTTTTCTTTT 57.001 29.630 0.00 0.00 0.00 2.27
1202 1338 6.207810 AGCGAAAATTTTGTACTCCATTACCA 59.792 34.615 8.47 0.00 0.00 3.25
1204 1340 7.544217 GCGAAAATTTTGTACTCCATTACCAAT 59.456 33.333 8.47 0.00 0.00 3.16
1212 1348 5.889289 TGTACTCCATTACCAATAAAAGGGC 59.111 40.000 0.00 0.00 0.00 5.19
1213 1349 5.206905 ACTCCATTACCAATAAAAGGGCT 57.793 39.130 0.00 0.00 0.00 5.19
1214 1350 5.201243 ACTCCATTACCAATAAAAGGGCTC 58.799 41.667 0.00 0.00 0.00 4.70
1215 1351 5.199982 TCCATTACCAATAAAAGGGCTCA 57.800 39.130 0.00 0.00 0.00 4.26
1217 1353 4.342092 CCATTACCAATAAAAGGGCTCAGG 59.658 45.833 0.00 0.00 0.00 3.86
1246 1382 4.556104 GCAACCCTAGAACCTTTTCGTTTC 60.556 45.833 0.00 0.00 36.78 2.78
1252 1388 1.332686 GAACCTTTTCGTTTCCGCTGT 59.667 47.619 0.00 0.00 0.00 4.40
1449 1605 7.898014 AAAATCTAGGTTTTGGTCTTGTCTT 57.102 32.000 12.95 0.00 30.55 3.01
1455 1611 4.887655 AGGTTTTGGTCTTGTCTTCGATTT 59.112 37.500 0.00 0.00 0.00 2.17
1458 1614 5.418310 TTTGGTCTTGTCTTCGATTTCAC 57.582 39.130 0.00 0.00 0.00 3.18
1501 1660 0.981183 TGGGGCTTACAAGTCACGAT 59.019 50.000 0.00 0.00 36.66 3.73
1516 1675 7.093902 ACAAGTCACGATATAGAAGGAAACTCA 60.094 37.037 0.00 0.00 42.68 3.41
1520 1679 7.432838 GTCACGATATAGAAGGAAACTCAGTTC 59.567 40.741 0.00 0.00 42.68 3.01
1522 1681 5.915758 CGATATAGAAGGAAACTCAGTTCGG 59.084 44.000 0.00 0.00 42.68 4.30
1523 1682 2.841442 AGAAGGAAACTCAGTTCGGG 57.159 50.000 0.00 0.00 42.68 5.14
1586 1745 0.768622 TCCGTTCCAGTTGGATGGTT 59.231 50.000 15.56 0.00 44.98 3.67
1774 2030 3.683365 AGTTTAGGCCAAGGCATTTTG 57.317 42.857 13.87 0.00 44.11 2.44
1783 2039 2.287129 CCAAGGCATTTTGCTTGTTTGC 60.287 45.455 0.00 0.00 44.28 3.68
1784 2040 2.614983 CAAGGCATTTTGCTTGTTTGCT 59.385 40.909 0.00 0.00 44.28 3.91
1830 2087 2.293399 GGGACTGTTGGTTCATGTCAAC 59.707 50.000 16.45 16.45 42.38 3.18
2078 2341 4.129737 GCTGGGCATGCAGCTGTG 62.130 66.667 21.36 7.83 44.79 3.66
2143 2406 1.063266 ACCCAAGTTTGAAGGGCAGAA 60.063 47.619 0.00 0.00 46.88 3.02
2171 2434 3.181479 TGAAGCGTCATAGGATGGTGTAC 60.181 47.826 1.53 0.00 40.48 2.90
2321 2584 6.626040 GATTGCAGCAATAGCATGTAGCCC 62.626 50.000 20.90 0.10 45.49 5.19
2397 2662 2.531522 ATTGTTGCCTTGGTTGAAGC 57.468 45.000 0.00 0.00 0.00 3.86
2459 2724 9.643693 TTAACTTACGGAAACTTATCAAGTAGG 57.356 33.333 0.00 0.00 41.91 3.18
2460 2725 6.637657 ACTTACGGAAACTTATCAAGTAGGG 58.362 40.000 0.00 0.00 41.91 3.53
2463 2728 3.370103 CGGAAACTTATCAAGTAGGGCCA 60.370 47.826 6.18 0.00 41.91 5.36
2464 2729 4.595986 GGAAACTTATCAAGTAGGGCCAA 58.404 43.478 6.18 0.00 41.91 4.52
2465 2730 5.014202 GGAAACTTATCAAGTAGGGCCAAA 58.986 41.667 6.18 0.00 41.91 3.28
2467 2732 5.514500 AACTTATCAAGTAGGGCCAAAGA 57.486 39.130 6.18 0.00 41.91 2.52
2468 2733 5.104259 ACTTATCAAGTAGGGCCAAAGAG 57.896 43.478 6.18 0.00 40.69 2.85
2469 2734 4.536489 ACTTATCAAGTAGGGCCAAAGAGT 59.464 41.667 6.18 0.00 40.69 3.24
2470 2735 2.859165 TCAAGTAGGGCCAAAGAGTG 57.141 50.000 6.18 0.00 0.00 3.51
2471 2736 2.334977 TCAAGTAGGGCCAAAGAGTGA 58.665 47.619 6.18 0.00 0.00 3.41
2472 2737 2.303022 TCAAGTAGGGCCAAAGAGTGAG 59.697 50.000 6.18 0.00 0.00 3.51
2473 2738 2.031495 AGTAGGGCCAAAGAGTGAGT 57.969 50.000 6.18 0.00 0.00 3.41
2474 2739 1.625818 AGTAGGGCCAAAGAGTGAGTG 59.374 52.381 6.18 0.00 0.00 3.51
2475 2740 0.324943 TAGGGCCAAAGAGTGAGTGC 59.675 55.000 6.18 0.00 0.00 4.40
2476 2741 1.973812 GGGCCAAAGAGTGAGTGCC 60.974 63.158 4.39 0.00 38.16 5.01
2477 2742 1.228245 GGCCAAAGAGTGAGTGCCA 60.228 57.895 0.00 0.00 38.73 4.92
2479 2744 0.312102 GCCAAAGAGTGAGTGCCAAC 59.688 55.000 0.00 0.00 0.00 3.77
2480 2745 1.972872 CCAAAGAGTGAGTGCCAACT 58.027 50.000 0.00 0.00 40.21 3.16
2483 2748 3.070018 CAAAGAGTGAGTGCCAACTAGG 58.930 50.000 0.00 0.00 36.52 3.02
2489 2754 4.327680 AGTGAGTGCCAACTAGGATTTTC 58.672 43.478 0.00 0.00 41.22 2.29
2491 2756 4.518970 GTGAGTGCCAACTAGGATTTTCAA 59.481 41.667 0.00 0.00 41.22 2.69
2492 2757 5.009610 GTGAGTGCCAACTAGGATTTTCAAA 59.990 40.000 0.00 0.00 41.22 2.69
2493 2758 5.241506 TGAGTGCCAACTAGGATTTTCAAAG 59.758 40.000 0.00 0.00 41.22 2.77
2494 2759 5.140454 AGTGCCAACTAGGATTTTCAAAGT 58.860 37.500 0.00 0.00 41.22 2.66
2495 2760 5.598417 AGTGCCAACTAGGATTTTCAAAGTT 59.402 36.000 0.00 0.00 41.22 2.66
2496 2761 6.098266 AGTGCCAACTAGGATTTTCAAAGTTT 59.902 34.615 0.00 0.00 41.22 2.66
2497 2762 6.200854 GTGCCAACTAGGATTTTCAAAGTTTG 59.799 38.462 9.44 9.44 41.22 2.93
2500 2765 7.470009 GCCAACTAGGATTTTCAAAGTTTGAGA 60.470 37.037 17.36 11.29 39.55 3.27
2501 2766 8.078596 CCAACTAGGATTTTCAAAGTTTGAGAG 58.921 37.037 17.36 10.06 39.55 3.20
2502 2767 8.624776 CAACTAGGATTTTCAAAGTTTGAGAGT 58.375 33.333 17.36 10.71 41.38 3.24
2504 2769 9.190317 ACTAGGATTTTCAAAGTTTGAGAGTTT 57.810 29.630 17.36 6.62 41.38 2.66
2505 2770 9.455847 CTAGGATTTTCAAAGTTTGAGAGTTTG 57.544 33.333 17.36 0.00 45.85 2.93
2513 2778 7.905031 CAAAGTTTGAGAGTTTGAGTTCATC 57.095 36.000 10.19 0.00 46.91 2.92
2515 2780 5.684704 AGTTTGAGAGTTTGAGTTCATCCA 58.315 37.500 0.00 0.00 0.00 3.41
2516 2781 5.762218 AGTTTGAGAGTTTGAGTTCATCCAG 59.238 40.000 0.00 0.00 0.00 3.86
2517 2782 5.551305 TTGAGAGTTTGAGTTCATCCAGA 57.449 39.130 0.00 0.00 0.00 3.86
2519 2784 5.728471 TGAGAGTTTGAGTTCATCCAGATC 58.272 41.667 0.00 0.00 0.00 2.75
2522 2787 7.179160 TGAGAGTTTGAGTTCATCCAGATCTTA 59.821 37.037 0.00 0.00 0.00 2.10
2523 2788 7.555087 AGAGTTTGAGTTCATCCAGATCTTAG 58.445 38.462 0.00 0.00 0.00 2.18
2524 2789 7.398618 AGAGTTTGAGTTCATCCAGATCTTAGA 59.601 37.037 0.00 0.00 0.00 2.10
2529 2794 9.993454 TTGAGTTCATCCAGATCTTAGATTATG 57.007 33.333 0.00 0.00 0.00 1.90
2530 2795 8.093307 TGAGTTCATCCAGATCTTAGATTATGC 58.907 37.037 0.00 0.00 0.00 3.14
2531 2796 8.204903 AGTTCATCCAGATCTTAGATTATGCT 57.795 34.615 0.00 0.00 0.00 3.79
2532 2797 8.658619 AGTTCATCCAGATCTTAGATTATGCTT 58.341 33.333 0.00 0.00 0.00 3.91
2533 2798 9.935241 GTTCATCCAGATCTTAGATTATGCTTA 57.065 33.333 0.00 0.00 0.00 3.09
2555 2820 8.719478 CTTAATTAAGCATTTAAGCCATCGAG 57.281 34.615 12.15 0.00 32.58 4.04
2556 2821 4.552166 TTAAGCATTTAAGCCATCGAGC 57.448 40.909 0.00 0.00 34.23 5.03
2557 2822 2.042686 AGCATTTAAGCCATCGAGCA 57.957 45.000 0.00 0.00 34.23 4.26
2559 2824 1.401552 GCATTTAAGCCATCGAGCACA 59.598 47.619 0.00 0.00 34.23 4.57
2560 2825 2.540361 GCATTTAAGCCATCGAGCACAG 60.540 50.000 0.00 0.00 34.23 3.66
2561 2826 2.760634 TTTAAGCCATCGAGCACAGA 57.239 45.000 0.00 0.00 34.23 3.41
2562 2827 2.760634 TTAAGCCATCGAGCACAGAA 57.239 45.000 0.00 0.00 34.23 3.02
2564 2829 1.896220 AAGCCATCGAGCACAGAAAA 58.104 45.000 0.00 0.00 34.23 2.29
2565 2830 2.119801 AGCCATCGAGCACAGAAAAT 57.880 45.000 0.00 0.00 34.23 1.82
2566 2831 1.741706 AGCCATCGAGCACAGAAAATG 59.258 47.619 0.00 0.00 34.23 2.32
2567 2832 1.796617 GCCATCGAGCACAGAAAATGC 60.797 52.381 0.00 0.00 43.74 3.56
2572 2837 4.157817 GCACAGAAAATGCGGCTG 57.842 55.556 0.00 0.00 32.45 4.85
2575 2840 0.109597 CACAGAAAATGCGGCTGGAC 60.110 55.000 0.00 0.00 34.05 4.02
2578 2843 1.134694 GAAAATGCGGCTGGACGAC 59.865 57.895 0.00 0.00 35.47 4.34
2591 2856 2.698803 TGGACGACAGACAATTCATGG 58.301 47.619 0.00 0.00 0.00 3.66
2592 2857 1.398390 GGACGACAGACAATTCATGGC 59.602 52.381 0.00 0.00 37.30 4.40
2612 2877 2.641305 CTGAATAGGCTCAGCTTTGCT 58.359 47.619 0.00 0.00 40.77 3.91
2614 2879 4.194640 CTGAATAGGCTCAGCTTTGCTAA 58.805 43.478 0.00 0.00 36.40 3.09
2615 2880 4.785301 TGAATAGGCTCAGCTTTGCTAAT 58.215 39.130 0.00 0.26 36.40 1.73
2616 2881 5.195940 TGAATAGGCTCAGCTTTGCTAATT 58.804 37.500 0.00 7.42 36.40 1.40
2617 2882 5.066893 TGAATAGGCTCAGCTTTGCTAATTG 59.933 40.000 0.00 0.00 36.40 2.32
2619 2884 2.490903 AGGCTCAGCTTTGCTAATTGTG 59.509 45.455 0.00 0.00 36.40 3.33
2620 2885 2.257034 GCTCAGCTTTGCTAATTGTGC 58.743 47.619 0.00 0.00 36.40 4.57
2623 2888 4.164294 CTCAGCTTTGCTAATTGTGCTTC 58.836 43.478 6.78 0.00 36.40 3.86
2624 2889 2.912967 CAGCTTTGCTAATTGTGCTTCG 59.087 45.455 6.78 0.00 36.40 3.79
2625 2890 2.813754 AGCTTTGCTAATTGTGCTTCGA 59.186 40.909 6.78 0.00 36.99 3.71
2626 2891 2.911102 GCTTTGCTAATTGTGCTTCGAC 59.089 45.455 6.78 0.00 0.00 4.20
2627 2892 3.365364 GCTTTGCTAATTGTGCTTCGACT 60.365 43.478 6.78 0.00 0.00 4.18
2628 2893 4.142902 GCTTTGCTAATTGTGCTTCGACTA 60.143 41.667 6.78 0.00 0.00 2.59
2629 2894 5.447818 GCTTTGCTAATTGTGCTTCGACTAT 60.448 40.000 6.78 0.00 0.00 2.12
2631 2896 7.519008 GCTTTGCTAATTGTGCTTCGACTATAT 60.519 37.037 6.78 0.00 0.00 0.86
2632 2897 7.786178 TTGCTAATTGTGCTTCGACTATATT 57.214 32.000 6.78 0.00 0.00 1.28
2634 2899 8.520835 TGCTAATTGTGCTTCGACTATATTAG 57.479 34.615 6.78 0.00 0.00 1.73
2635 2900 7.116376 TGCTAATTGTGCTTCGACTATATTAGC 59.884 37.037 19.14 19.14 44.51 3.09
2636 2901 7.329717 GCTAATTGTGCTTCGACTATATTAGCT 59.670 37.037 18.90 0.00 42.60 3.32
2637 2902 9.197694 CTAATTGTGCTTCGACTATATTAGCTT 57.802 33.333 0.00 0.00 33.15 3.74
2638 2903 8.438676 AATTGTGCTTCGACTATATTAGCTTT 57.561 30.769 0.00 0.00 33.15 3.51
2640 2905 5.234329 TGTGCTTCGACTATATTAGCTTTGC 59.766 40.000 0.00 0.00 33.15 3.68
2641 2906 4.444388 TGCTTCGACTATATTAGCTTTGCG 59.556 41.667 0.00 0.00 33.15 4.85
2642 2907 4.143305 GCTTCGACTATATTAGCTTTGCGG 60.143 45.833 0.00 0.00 0.00 5.69
2643 2908 4.579454 TCGACTATATTAGCTTTGCGGT 57.421 40.909 0.00 0.00 0.00 5.68
2644 2909 4.543692 TCGACTATATTAGCTTTGCGGTC 58.456 43.478 0.00 0.00 0.00 4.79
2645 2910 3.361053 CGACTATATTAGCTTTGCGGTCG 59.639 47.826 0.00 2.42 38.08 4.79
2649 2914 5.989777 ACTATATTAGCTTTGCGGTCGAAAT 59.010 36.000 0.00 0.00 0.00 2.17
2651 2916 4.531659 ATTAGCTTTGCGGTCGAAATAC 57.468 40.909 0.00 0.00 0.00 1.89
2653 2918 1.463444 AGCTTTGCGGTCGAAATACAC 59.537 47.619 0.00 0.00 0.00 2.90
2655 2920 2.095919 GCTTTGCGGTCGAAATACACTT 60.096 45.455 0.00 0.00 0.00 3.16
2656 2921 3.608474 GCTTTGCGGTCGAAATACACTTT 60.608 43.478 0.00 0.00 0.00 2.66
2657 2922 3.799137 TTGCGGTCGAAATACACTTTC 57.201 42.857 0.00 0.00 0.00 2.62
2669 2934 7.735500 CGAAATACACTTTCGGAAATAGAACA 58.264 34.615 11.22 0.00 45.17 3.18
2670 2935 8.225107 CGAAATACACTTTCGGAAATAGAACAA 58.775 33.333 11.22 0.00 45.17 2.83
2675 2940 7.813645 ACACTTTCGGAAATAGAACAATTACC 58.186 34.615 3.24 0.00 0.00 2.85
2676 2941 7.664318 ACACTTTCGGAAATAGAACAATTACCT 59.336 33.333 3.24 0.00 0.00 3.08
2677 2942 8.512138 CACTTTCGGAAATAGAACAATTACCTT 58.488 33.333 3.24 0.00 0.00 3.50
2678 2943 9.729281 ACTTTCGGAAATAGAACAATTACCTTA 57.271 29.630 3.24 0.00 0.00 2.69
2680 2945 9.729281 TTTCGGAAATAGAACAATTACCTTAGT 57.271 29.630 0.00 0.00 0.00 2.24
2681 2946 8.937634 TCGGAAATAGAACAATTACCTTAGTC 57.062 34.615 0.00 0.00 0.00 2.59
2682 2947 8.755977 TCGGAAATAGAACAATTACCTTAGTCT 58.244 33.333 0.00 0.00 0.00 3.24
2683 2948 9.032420 CGGAAATAGAACAATTACCTTAGTCTC 57.968 37.037 0.00 0.00 0.00 3.36
2684 2949 9.886132 GGAAATAGAACAATTACCTTAGTCTCA 57.114 33.333 0.00 0.00 0.00 3.27
2689 2954 8.834749 AGAACAATTACCTTAGTCTCACTTTC 57.165 34.615 0.00 0.00 0.00 2.62
2690 2955 8.429641 AGAACAATTACCTTAGTCTCACTTTCA 58.570 33.333 0.00 0.00 0.00 2.69
2691 2956 9.220767 GAACAATTACCTTAGTCTCACTTTCAT 57.779 33.333 0.00 0.00 0.00 2.57
2692 2957 8.553459 ACAATTACCTTAGTCTCACTTTCATG 57.447 34.615 0.00 0.00 0.00 3.07
2693 2958 8.375506 ACAATTACCTTAGTCTCACTTTCATGA 58.624 33.333 0.00 0.00 0.00 3.07
2694 2959 9.388506 CAATTACCTTAGTCTCACTTTCATGAT 57.611 33.333 0.00 0.00 0.00 2.45
2695 2960 9.965902 AATTACCTTAGTCTCACTTTCATGATT 57.034 29.630 0.00 0.00 0.00 2.57
2696 2961 8.777865 TTACCTTAGTCTCACTTTCATGATTG 57.222 34.615 0.00 0.00 0.00 2.67
2697 2962 7.009179 ACCTTAGTCTCACTTTCATGATTGA 57.991 36.000 0.00 0.00 0.00 2.57
2698 2963 7.628234 ACCTTAGTCTCACTTTCATGATTGAT 58.372 34.615 0.00 0.00 0.00 2.57
2699 2964 7.551974 ACCTTAGTCTCACTTTCATGATTGATG 59.448 37.037 0.00 0.00 0.00 3.07
2700 2965 7.767659 CCTTAGTCTCACTTTCATGATTGATGA 59.232 37.037 0.00 0.00 39.47 2.92
2701 2966 6.981762 AGTCTCACTTTCATGATTGATGAC 57.018 37.500 0.00 9.24 41.02 3.06
2702 2967 6.470278 AGTCTCACTTTCATGATTGATGACA 58.530 36.000 19.77 0.00 41.02 3.58
2703 2968 6.370994 AGTCTCACTTTCATGATTGATGACAC 59.629 38.462 19.77 11.79 41.02 3.67
2704 2969 6.148315 GTCTCACTTTCATGATTGATGACACA 59.852 38.462 0.00 0.00 41.02 3.72
2705 2970 6.882678 TCTCACTTTCATGATTGATGACACAT 59.117 34.615 0.00 0.00 41.02 3.21
2706 2971 8.042515 TCTCACTTTCATGATTGATGACACATA 58.957 33.333 0.00 0.00 41.02 2.29
2707 2972 8.741603 TCACTTTCATGATTGATGACACATAT 57.258 30.769 0.00 0.00 41.02 1.78
2708 2973 9.181061 TCACTTTCATGATTGATGACACATATT 57.819 29.630 0.00 0.00 41.02 1.28
2748 3066 5.312079 AGCTTAGACTTCAGCTTGTGAATT 58.688 37.500 3.51 0.00 44.28 2.17
2749 3067 5.411053 AGCTTAGACTTCAGCTTGTGAATTC 59.589 40.000 0.00 0.00 44.28 2.17
2750 3068 5.391416 GCTTAGACTTCAGCTTGTGAATTCC 60.391 44.000 2.27 0.00 44.44 3.01
2751 3069 4.363991 AGACTTCAGCTTGTGAATTCCT 57.636 40.909 2.27 0.00 44.44 3.36
2752 3070 4.322567 AGACTTCAGCTTGTGAATTCCTC 58.677 43.478 2.27 0.00 44.44 3.71
2753 3071 3.416156 ACTTCAGCTTGTGAATTCCTCC 58.584 45.455 2.27 0.00 44.44 4.30
2755 3073 4.287067 ACTTCAGCTTGTGAATTCCTCCTA 59.713 41.667 2.27 0.00 44.44 2.94
2757 3075 5.441718 TCAGCTTGTGAATTCCTCCTATT 57.558 39.130 2.27 0.00 29.64 1.73
2758 3076 5.819991 TCAGCTTGTGAATTCCTCCTATTT 58.180 37.500 2.27 0.00 29.64 1.40
2759 3077 5.882557 TCAGCTTGTGAATTCCTCCTATTTC 59.117 40.000 2.27 0.00 29.64 2.17
2760 3078 5.884792 CAGCTTGTGAATTCCTCCTATTTCT 59.115 40.000 2.27 0.00 0.00 2.52
2761 3079 6.376581 CAGCTTGTGAATTCCTCCTATTTCTT 59.623 38.462 2.27 0.00 0.00 2.52
2766 3271 6.659242 TGTGAATTCCTCCTATTTCTTTGACC 59.341 38.462 2.27 0.00 0.00 4.02
2852 3366 1.444895 CCAGCCGCATTTTCTGTGC 60.445 57.895 0.00 0.00 39.18 4.57
2913 3427 5.928976 TCTGGATGAACTCAAACTCTCAAA 58.071 37.500 0.00 0.00 0.00 2.69
2916 3430 6.122277 TGGATGAACTCAAACTCTCAAACTT 58.878 36.000 0.00 0.00 0.00 2.66
2952 3467 1.774217 ACTCACTCTTTGGCCCCCA 60.774 57.895 0.00 0.00 0.00 4.96
2979 3500 1.966451 CACAACGGTTGAGGAGGGC 60.966 63.158 26.39 0.00 0.00 5.19
2996 3517 2.507407 GGCATGTCCCCAGACTTTAA 57.493 50.000 0.00 0.00 43.91 1.52
3034 3555 0.175531 ACACAGTGCTTTTGGTTGCC 59.824 50.000 0.00 0.00 0.00 4.52
3036 3557 0.901124 ACAGTGCTTTTGGTTGCCAA 59.099 45.000 0.00 0.00 42.29 4.52
3037 3558 1.134729 ACAGTGCTTTTGGTTGCCAAG 60.135 47.619 0.69 0.00 44.84 3.61
3056 3577 2.024414 AGTGCTGGAGAAACAAACCAC 58.976 47.619 0.00 0.00 0.00 4.16
3145 3666 5.072741 TCTTTTCCTGAATGTCCAAAGGAG 58.927 41.667 0.00 0.00 39.90 3.69
3146 3667 3.439857 TTCCTGAATGTCCAAAGGAGG 57.560 47.619 0.00 0.00 39.90 4.30
3147 3668 2.631384 TCCTGAATGTCCAAAGGAGGA 58.369 47.619 0.00 0.00 33.85 3.71
3160 3681 7.027874 TCCAAAGGAGGACATATGTAAAACT 57.972 36.000 8.71 5.01 31.23 2.66
3161 3682 6.884295 TCCAAAGGAGGACATATGTAAAACTG 59.116 38.462 8.71 1.17 31.23 3.16
3162 3683 6.095440 CCAAAGGAGGACATATGTAAAACTGG 59.905 42.308 8.71 6.43 0.00 4.00
3163 3684 6.636454 AAGGAGGACATATGTAAAACTGGA 57.364 37.500 8.71 0.00 0.00 3.86
3164 3685 6.831664 AGGAGGACATATGTAAAACTGGAT 57.168 37.500 8.71 0.00 0.00 3.41
3165 3686 7.213178 AGGAGGACATATGTAAAACTGGATT 57.787 36.000 8.71 0.00 0.00 3.01
3166 3687 7.643123 AGGAGGACATATGTAAAACTGGATTT 58.357 34.615 8.71 0.00 0.00 2.17
3167 3688 8.116026 AGGAGGACATATGTAAAACTGGATTTT 58.884 33.333 8.71 0.00 43.18 1.82
3168 3689 8.190784 GGAGGACATATGTAAAACTGGATTTTG 58.809 37.037 8.71 0.00 40.80 2.44
3169 3690 7.547227 AGGACATATGTAAAACTGGATTTTGC 58.453 34.615 8.71 0.00 40.80 3.68
3170 3691 6.756542 GGACATATGTAAAACTGGATTTTGCC 59.243 38.462 8.71 0.00 40.94 4.52
3171 3692 7.238486 ACATATGTAAAACTGGATTTTGCCA 57.762 32.000 6.56 0.00 40.94 4.92
3172 3693 7.096551 ACATATGTAAAACTGGATTTTGCCAC 58.903 34.615 6.56 0.00 40.94 5.01
3173 3694 5.543507 ATGTAAAACTGGATTTTGCCACA 57.456 34.783 0.00 0.00 40.94 4.17
3174 3695 4.688021 TGTAAAACTGGATTTTGCCACAC 58.312 39.130 0.00 0.00 40.94 3.82
3175 3696 3.902881 AAAACTGGATTTTGCCACACA 57.097 38.095 0.00 0.00 39.13 3.72
3176 3697 3.902881 AAACTGGATTTTGCCACACAA 57.097 38.095 0.00 0.00 36.13 3.33
3177 3698 3.902881 AACTGGATTTTGCCACACAAA 57.097 38.095 0.00 0.00 46.51 2.83
3185 3706 3.703001 TTTGCCACACAAAAGGGAAAA 57.297 38.095 0.00 0.00 45.22 2.29
3186 3707 2.977772 TGCCACACAAAAGGGAAAAG 57.022 45.000 0.00 0.00 0.00 2.27
3187 3708 2.461695 TGCCACACAAAAGGGAAAAGA 58.538 42.857 0.00 0.00 0.00 2.52
3188 3709 2.834549 TGCCACACAAAAGGGAAAAGAA 59.165 40.909 0.00 0.00 0.00 2.52
3189 3710 3.261897 TGCCACACAAAAGGGAAAAGAAA 59.738 39.130 0.00 0.00 0.00 2.52
3190 3711 4.257731 GCCACACAAAAGGGAAAAGAAAA 58.742 39.130 0.00 0.00 0.00 2.29
3191 3712 4.881273 GCCACACAAAAGGGAAAAGAAAAT 59.119 37.500 0.00 0.00 0.00 1.82
3192 3713 5.356751 GCCACACAAAAGGGAAAAGAAAATT 59.643 36.000 0.00 0.00 0.00 1.82
3193 3714 6.677675 GCCACACAAAAGGGAAAAGAAAATTG 60.678 38.462 0.00 0.00 0.00 2.32
3194 3715 6.257423 CACACAAAAGGGAAAAGAAAATTGC 58.743 36.000 0.00 0.00 0.00 3.56
3195 3716 5.942826 ACACAAAAGGGAAAAGAAAATTGCA 59.057 32.000 0.00 0.00 0.00 4.08
3196 3717 6.432472 ACACAAAAGGGAAAAGAAAATTGCAA 59.568 30.769 0.00 0.00 0.00 4.08
3197 3718 6.746822 CACAAAAGGGAAAAGAAAATTGCAAC 59.253 34.615 0.00 0.00 0.00 4.17
3198 3719 6.658816 ACAAAAGGGAAAAGAAAATTGCAACT 59.341 30.769 0.00 0.00 0.00 3.16
3199 3720 6.682423 AAAGGGAAAAGAAAATTGCAACTG 57.318 33.333 0.00 0.00 0.00 3.16
3210 3731 0.179037 TTGCAACTGACTGCTGAGCT 60.179 50.000 5.83 0.00 43.07 4.09
3215 3736 2.735663 CAACTGACTGCTGAGCTAGTTG 59.264 50.000 20.50 20.50 39.04 3.16
3258 3779 1.271934 TGGATTTGTGTCGCATTTGGG 59.728 47.619 0.00 0.00 0.00 4.12
3262 3783 0.387202 TTGTGTCGCATTTGGGTTGG 59.613 50.000 0.00 0.00 0.00 3.77
3311 3832 0.313043 GCATCAGGGCGAAATGGATG 59.687 55.000 0.00 0.00 38.64 3.51
3324 3845 4.201950 CGAAATGGATGGAAGGATTGTGTC 60.202 45.833 0.00 0.00 0.00 3.67
3330 3851 1.079503 GGAAGGATTGTGTCGCTGAC 58.920 55.000 2.32 2.32 0.00 3.51
3336 3857 2.744202 GGATTGTGTCGCTGACAAGATT 59.256 45.455 11.92 0.50 44.49 2.40
3351 3872 5.685068 TGACAAGATTAAAAACATGTGCACG 59.315 36.000 13.13 0.65 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.156891 TCGCTTTTTACTGTAGCTTGCG 59.843 45.455 15.67 15.67 41.82 4.85
155 166 1.801983 CATGCATTGCACGCCAGTA 59.198 52.632 14.66 0.00 43.04 2.74
271 298 1.631072 CACATGCGCGTGCTAGTAC 59.369 57.895 28.93 0.08 43.34 2.73
272 299 4.086860 CACATGCGCGTGCTAGTA 57.913 55.556 28.93 1.06 43.34 1.82
440 488 4.253257 CGACCGAGACCGCTAGCC 62.253 72.222 9.66 0.00 0.00 3.93
466 514 1.140589 CAGCACGGCACACCAAAAA 59.859 52.632 0.00 0.00 34.57 1.94
519 567 0.475475 TATCTCCCCAGCCAGCAATG 59.525 55.000 0.00 0.00 0.00 2.82
520 568 0.769873 CTATCTCCCCAGCCAGCAAT 59.230 55.000 0.00 0.00 0.00 3.56
522 570 0.104777 ATCTATCTCCCCAGCCAGCA 60.105 55.000 0.00 0.00 0.00 4.41
679 754 2.095567 CAGAAATTTGACGCAGAGGGTG 60.096 50.000 0.00 0.00 0.00 4.61
680 755 2.154462 CAGAAATTTGACGCAGAGGGT 58.846 47.619 0.00 0.00 0.00 4.34
688 763 2.160417 GCTGGGTCTCAGAAATTTGACG 59.840 50.000 3.10 0.00 46.18 4.35
698 773 1.134461 CATCCTTCTGCTGGGTCTCAG 60.134 57.143 0.00 0.00 46.03 3.35
709 784 4.430007 CAAATCCAACATGCATCCTTCTG 58.570 43.478 0.00 0.00 0.00 3.02
719 794 4.100529 GTCATTCGAGCAAATCCAACATG 58.899 43.478 0.00 0.00 0.00 3.21
739 814 9.555727 TTATACCTAGGCAGATAAAACATTGTC 57.444 33.333 9.30 0.00 0.00 3.18
755 830 5.864474 GCTCGTCATGTTGATTATACCTAGG 59.136 44.000 7.41 7.41 0.00 3.02
760 835 6.358030 GCAAATGCTCGTCATGTTGATTATAC 59.642 38.462 0.00 0.00 35.13 1.47
761 836 6.038050 TGCAAATGCTCGTCATGTTGATTATA 59.962 34.615 6.97 0.00 42.66 0.98
762 837 5.163632 TGCAAATGCTCGTCATGTTGATTAT 60.164 36.000 6.97 0.00 42.66 1.28
763 838 4.155644 TGCAAATGCTCGTCATGTTGATTA 59.844 37.500 6.97 0.00 42.66 1.75
765 840 2.488937 TGCAAATGCTCGTCATGTTGAT 59.511 40.909 6.97 0.00 42.66 2.57
767 842 2.247637 CTGCAAATGCTCGTCATGTTG 58.752 47.619 6.97 0.00 42.66 3.33
768 843 1.401931 GCTGCAAATGCTCGTCATGTT 60.402 47.619 6.97 0.00 42.66 2.71
775 854 1.057636 CACTTTGCTGCAAATGCTCG 58.942 50.000 26.18 16.94 42.66 5.03
786 865 1.890489 TGCATCATGCTTCACTTTGCT 59.110 42.857 11.84 0.00 45.31 3.91
797 876 5.593968 TCATGGTAAAAATCTGCATCATGC 58.406 37.500 1.35 1.35 45.29 4.06
829 908 5.622770 AGCGTTTATTTAGTTCCAGTTGG 57.377 39.130 0.00 0.00 0.00 3.77
832 921 5.935789 TGCTTAGCGTTTATTTAGTTCCAGT 59.064 36.000 0.00 0.00 0.00 4.00
848 937 4.218635 TCTCCTATATGTCCTTGCTTAGCG 59.781 45.833 0.00 0.00 0.00 4.26
855 944 9.197694 CGTAAAATCTTCTCCTATATGTCCTTG 57.802 37.037 0.00 0.00 0.00 3.61
856 945 9.144298 TCGTAAAATCTTCTCCTATATGTCCTT 57.856 33.333 0.00 0.00 0.00 3.36
858 947 9.194271 GTTCGTAAAATCTTCTCCTATATGTCC 57.806 37.037 0.00 0.00 0.00 4.02
868 957 5.013861 TGCGTTGTTCGTAAAATCTTCTC 57.986 39.130 0.00 0.00 42.13 2.87
869 958 5.607119 ATGCGTTGTTCGTAAAATCTTCT 57.393 34.783 0.00 0.00 42.13 2.85
870 959 5.448162 GCTATGCGTTGTTCGTAAAATCTTC 59.552 40.000 0.00 0.00 42.13 2.87
871 960 5.321516 GCTATGCGTTGTTCGTAAAATCTT 58.678 37.500 0.00 0.00 42.13 2.40
888 977 0.108424 CTGAGCTATCCCCGCTATGC 60.108 60.000 0.00 0.00 37.96 3.14
891 980 1.040646 CAACTGAGCTATCCCCGCTA 58.959 55.000 0.00 0.00 37.96 4.26
979 1068 3.620488 TGGAATTTTCGGATGGGAGAAG 58.380 45.455 0.00 0.00 0.00 2.85
989 1078 7.095187 GCTCAAGTATATACCTGGAATTTTCGG 60.095 40.741 9.32 0.00 0.00 4.30
1081 1175 2.356553 GCGTCCTGTGTTGCGGTA 60.357 61.111 0.00 0.00 0.00 4.02
1093 1187 2.617274 GCTGGAAGTTGTGGCGTCC 61.617 63.158 0.00 0.00 37.50 4.79
1116 1210 7.187244 AGAAAAGAAAAGGTAGAACTTACGC 57.813 36.000 0.00 0.00 0.00 4.42
1147 1241 4.717310 GCTGGAGCAATACGCAGTAAACA 61.717 47.826 0.00 0.00 43.83 2.83
1148 1242 2.223044 GCTGGAGCAATACGCAGTAAAC 60.223 50.000 0.00 0.00 43.83 2.01
1149 1243 2.006888 GCTGGAGCAATACGCAGTAAA 58.993 47.619 0.00 0.00 43.83 2.01
1177 1276 6.207810 TGGTAATGGAGTACAAAATTTTCGCT 59.792 34.615 0.00 0.00 0.00 4.93
1178 1277 6.383415 TGGTAATGGAGTACAAAATTTTCGC 58.617 36.000 0.00 0.00 0.00 4.70
1212 1348 1.071385 CTAGGGTTGCTATGGCCTGAG 59.929 57.143 3.32 1.57 37.74 3.35
1213 1349 1.131638 CTAGGGTTGCTATGGCCTGA 58.868 55.000 3.32 0.00 37.74 3.86
1214 1350 1.131638 TCTAGGGTTGCTATGGCCTG 58.868 55.000 3.32 0.00 37.74 4.85
1215 1351 1.490910 GTTCTAGGGTTGCTATGGCCT 59.509 52.381 3.32 0.00 37.74 5.19
1217 1353 1.490910 AGGTTCTAGGGTTGCTATGGC 59.509 52.381 0.00 0.00 39.26 4.40
1252 1388 0.744874 CGGATCTGACGGGAAGCTTA 59.255 55.000 0.00 0.00 0.00 3.09
1260 1396 0.457853 TTTCGAAGCGGATCTGACGG 60.458 55.000 5.48 0.00 0.00 4.79
1424 1580 7.898014 AGACAAGACCAAAACCTAGATTTTT 57.102 32.000 0.00 0.00 29.17 1.94
1425 1581 7.255139 CGAAGACAAGACCAAAACCTAGATTTT 60.255 37.037 0.00 0.00 31.87 1.82
1426 1582 6.204882 CGAAGACAAGACCAAAACCTAGATTT 59.795 38.462 0.00 0.00 0.00 2.17
1440 1596 4.932200 AGATGGTGAAATCGAAGACAAGAC 59.068 41.667 0.00 0.00 42.51 3.01
1442 1598 5.521735 CCTAGATGGTGAAATCGAAGACAAG 59.478 44.000 0.00 0.00 42.51 3.16
1458 1614 7.445402 CCAGGTACATAATCAAAACCTAGATGG 59.555 40.741 0.00 0.00 38.51 3.51
1480 1639 0.673644 CGTGACTTGTAAGCCCCAGG 60.674 60.000 0.00 0.00 0.00 4.45
1501 1660 5.266788 TCCCGAACTGAGTTTCCTTCTATA 58.733 41.667 0.00 0.00 0.00 1.31
1514 1673 5.873164 GCTAACTTTTAGAATCCCGAACTGA 59.127 40.000 0.00 0.00 0.00 3.41
1516 1675 5.801380 TGCTAACTTTTAGAATCCCGAACT 58.199 37.500 0.00 0.00 0.00 3.01
1520 1679 5.817816 ACTGATGCTAACTTTTAGAATCCCG 59.182 40.000 10.28 5.56 30.19 5.14
1522 1681 6.599638 ACCACTGATGCTAACTTTTAGAATCC 59.400 38.462 10.28 0.00 30.19 3.01
1523 1682 7.119846 ACACCACTGATGCTAACTTTTAGAATC 59.880 37.037 6.89 6.89 31.60 2.52
1586 1745 8.956426 GTGTATCTTCCCTTGATTGACAAAATA 58.044 33.333 0.00 0.00 38.08 1.40
1660 1820 2.231964 CTGGTCCCATTGTCCATTTGTG 59.768 50.000 0.00 0.00 0.00 3.33
1742 1998 5.835113 TGGCCTAAACTAATCTCAAATGC 57.165 39.130 3.32 0.00 0.00 3.56
1774 2030 5.858581 CCAGAGTTGTATAAAGCAAACAAGC 59.141 40.000 0.00 0.00 34.01 4.01
1783 2039 4.843728 TCCAAGGCCAGAGTTGTATAAAG 58.156 43.478 5.01 0.00 0.00 1.85
1784 2040 4.288626 ACTCCAAGGCCAGAGTTGTATAAA 59.711 41.667 15.26 0.00 40.43 1.40
1830 2087 8.963725 ACATGATTCATATACATAAGCAATGGG 58.036 33.333 0.00 0.00 40.16 4.00
1863 2120 7.297614 AGTAATCACCATTGCAAGGGTAATAT 58.702 34.615 33.30 23.06 41.92 1.28
1870 2133 3.928375 GCAAAGTAATCACCATTGCAAGG 59.072 43.478 4.94 4.26 42.87 3.61
1919 2182 1.471684 CAGCCTGATTCAAGAGCAACC 59.528 52.381 0.00 0.00 0.00 3.77
2072 2335 1.985473 TTGCATTGTCCTTCACAGCT 58.015 45.000 0.00 0.00 35.97 4.24
2078 2341 3.751621 CGTCTCATTTGCATTGTCCTTC 58.248 45.455 0.00 0.00 0.00 3.46
2143 2406 1.899814 TCCTATGACGCTTCACAAGGT 59.100 47.619 17.91 0.00 38.56 3.50
2266 2529 7.815840 TCTGGAACAAACATTAATCAAGTCA 57.184 32.000 0.00 0.00 38.70 3.41
2376 2639 3.367292 CGCTTCAACCAAGGCAACAATAT 60.367 43.478 0.00 0.00 41.41 1.28
2377 2640 2.030363 CGCTTCAACCAAGGCAACAATA 60.030 45.455 0.00 0.00 41.41 1.90
2397 2662 5.723492 TCATGCACATAGAGAAATTCACG 57.277 39.130 0.00 0.00 0.00 4.35
2458 2723 1.973812 GGCACTCACTCTTTGGCCC 60.974 63.158 0.00 0.00 35.42 5.80
2459 2724 0.823356 TTGGCACTCACTCTTTGGCC 60.823 55.000 0.00 0.00 41.70 5.36
2460 2725 0.312102 GTTGGCACTCACTCTTTGGC 59.688 55.000 0.00 0.00 36.39 4.52
2463 2728 2.972713 TCCTAGTTGGCACTCACTCTTT 59.027 45.455 0.00 0.00 34.06 2.52
2464 2729 2.609747 TCCTAGTTGGCACTCACTCTT 58.390 47.619 0.00 0.00 34.06 2.85
2465 2730 2.310779 TCCTAGTTGGCACTCACTCT 57.689 50.000 0.00 0.00 34.06 3.24
2467 2732 4.202461 TGAAAATCCTAGTTGGCACTCACT 60.202 41.667 0.00 0.00 34.06 3.41
2468 2733 4.072131 TGAAAATCCTAGTTGGCACTCAC 58.928 43.478 0.00 0.00 34.06 3.51
2469 2734 4.365514 TGAAAATCCTAGTTGGCACTCA 57.634 40.909 0.00 0.00 34.06 3.41
2470 2735 5.241728 ACTTTGAAAATCCTAGTTGGCACTC 59.758 40.000 0.00 0.00 34.06 3.51
2471 2736 5.140454 ACTTTGAAAATCCTAGTTGGCACT 58.860 37.500 0.00 0.00 36.99 4.40
2472 2737 5.453567 ACTTTGAAAATCCTAGTTGGCAC 57.546 39.130 0.00 0.00 35.26 5.01
2473 2738 6.097554 TCAAACTTTGAAAATCCTAGTTGGCA 59.902 34.615 1.47 0.00 36.59 4.92
2474 2739 6.512297 TCAAACTTTGAAAATCCTAGTTGGC 58.488 36.000 1.47 0.00 36.59 4.52
2475 2740 7.940850 TCTCAAACTTTGAAAATCCTAGTTGG 58.059 34.615 5.72 0.00 39.58 3.77
2476 2741 8.624776 ACTCTCAAACTTTGAAAATCCTAGTTG 58.375 33.333 5.72 0.00 39.58 3.16
2477 2742 8.753497 ACTCTCAAACTTTGAAAATCCTAGTT 57.247 30.769 5.72 0.00 39.58 2.24
2479 2744 9.455847 CAAACTCTCAAACTTTGAAAATCCTAG 57.544 33.333 5.72 0.00 39.58 3.02
2480 2745 9.184523 TCAAACTCTCAAACTTTGAAAATCCTA 57.815 29.630 5.72 0.00 39.58 2.94
2483 2748 8.917415 ACTCAAACTCTCAAACTTTGAAAATC 57.083 30.769 5.72 0.00 39.58 2.17
2489 2754 6.914757 GGATGAACTCAAACTCTCAAACTTTG 59.085 38.462 0.00 0.00 0.00 2.77
2491 2756 6.122277 TGGATGAACTCAAACTCTCAAACTT 58.878 36.000 0.00 0.00 0.00 2.66
2492 2757 5.684704 TGGATGAACTCAAACTCTCAAACT 58.315 37.500 0.00 0.00 0.00 2.66
2493 2758 5.760253 TCTGGATGAACTCAAACTCTCAAAC 59.240 40.000 0.00 0.00 0.00 2.93
2494 2759 5.928976 TCTGGATGAACTCAAACTCTCAAA 58.071 37.500 0.00 0.00 0.00 2.69
2495 2760 5.551305 TCTGGATGAACTCAAACTCTCAA 57.449 39.130 0.00 0.00 0.00 3.02
2496 2761 5.483231 AGATCTGGATGAACTCAAACTCTCA 59.517 40.000 0.00 0.00 0.00 3.27
2497 2762 5.976458 AGATCTGGATGAACTCAAACTCTC 58.024 41.667 0.00 0.00 0.00 3.20
2500 2765 7.487822 TCTAAGATCTGGATGAACTCAAACT 57.512 36.000 0.00 0.00 0.00 2.66
2501 2766 8.729805 AATCTAAGATCTGGATGAACTCAAAC 57.270 34.615 10.87 0.00 0.00 2.93
2504 2769 8.093307 GCATAATCTAAGATCTGGATGAACTCA 58.907 37.037 10.87 0.00 0.00 3.41
2505 2770 8.313292 AGCATAATCTAAGATCTGGATGAACTC 58.687 37.037 10.87 3.11 0.00 3.01
2506 2771 8.204903 AGCATAATCTAAGATCTGGATGAACT 57.795 34.615 10.87 5.03 0.00 3.01
2507 2772 8.845413 AAGCATAATCTAAGATCTGGATGAAC 57.155 34.615 10.87 3.35 0.00 3.18
2530 2795 7.324616 GCTCGATGGCTTAAATGCTTAATTAAG 59.675 37.037 19.08 19.08 40.46 1.85
2531 2796 7.138736 GCTCGATGGCTTAAATGCTTAATTAA 58.861 34.615 0.00 0.00 0.00 1.40
2532 2797 6.262049 TGCTCGATGGCTTAAATGCTTAATTA 59.738 34.615 0.00 0.00 0.00 1.40
2533 2798 5.067674 TGCTCGATGGCTTAAATGCTTAATT 59.932 36.000 0.00 0.00 0.00 1.40
2534 2799 4.580167 TGCTCGATGGCTTAAATGCTTAAT 59.420 37.500 0.00 0.00 0.00 1.40
2535 2800 3.944650 TGCTCGATGGCTTAAATGCTTAA 59.055 39.130 0.00 0.00 0.00 1.85
2536 2801 3.312421 GTGCTCGATGGCTTAAATGCTTA 59.688 43.478 0.00 0.00 0.00 3.09
2537 2802 2.098117 GTGCTCGATGGCTTAAATGCTT 59.902 45.455 0.00 0.00 0.00 3.91
2539 2804 1.401552 TGTGCTCGATGGCTTAAATGC 59.598 47.619 0.00 0.00 0.00 3.56
2540 2805 2.938451 TCTGTGCTCGATGGCTTAAATG 59.062 45.455 0.00 0.00 0.00 2.32
2542 2807 2.760634 TCTGTGCTCGATGGCTTAAA 57.239 45.000 0.00 0.00 0.00 1.52
2545 2810 1.896220 TTTTCTGTGCTCGATGGCTT 58.104 45.000 0.00 0.00 0.00 4.35
2546 2811 1.741706 CATTTTCTGTGCTCGATGGCT 59.258 47.619 0.00 0.00 0.00 4.75
2547 2812 1.796617 GCATTTTCTGTGCTCGATGGC 60.797 52.381 0.00 0.00 39.45 4.40
2549 2814 1.530441 CCGCATTTTCTGTGCTCGATG 60.530 52.381 0.00 0.00 40.37 3.84
2550 2815 0.729116 CCGCATTTTCTGTGCTCGAT 59.271 50.000 0.00 0.00 40.37 3.59
2551 2816 1.911293 GCCGCATTTTCTGTGCTCGA 61.911 55.000 0.00 0.00 40.37 4.04
2553 2818 0.455633 CAGCCGCATTTTCTGTGCTC 60.456 55.000 0.00 0.00 40.37 4.26
2554 2819 1.582968 CAGCCGCATTTTCTGTGCT 59.417 52.632 0.00 0.00 40.37 4.40
2555 2820 1.444895 CCAGCCGCATTTTCTGTGC 60.445 57.895 0.00 0.00 39.18 4.57
2556 2821 0.109597 GTCCAGCCGCATTTTCTGTG 60.110 55.000 0.00 0.00 35.02 3.66
2557 2822 1.577328 CGTCCAGCCGCATTTTCTGT 61.577 55.000 0.00 0.00 0.00 3.41
2559 2824 1.003839 TCGTCCAGCCGCATTTTCT 60.004 52.632 0.00 0.00 0.00 2.52
2560 2825 1.134694 GTCGTCCAGCCGCATTTTC 59.865 57.895 0.00 0.00 0.00 2.29
2561 2826 1.577328 CTGTCGTCCAGCCGCATTTT 61.577 55.000 0.00 0.00 33.59 1.82
2562 2827 2.031919 TGTCGTCCAGCCGCATTT 59.968 55.556 0.00 0.00 0.00 2.32
2564 2829 3.381983 TCTGTCGTCCAGCCGCAT 61.382 61.111 0.00 0.00 41.25 4.73
2565 2830 4.357947 GTCTGTCGTCCAGCCGCA 62.358 66.667 0.00 0.00 41.25 5.69
2566 2831 3.858868 TTGTCTGTCGTCCAGCCGC 62.859 63.158 0.79 0.00 41.25 6.53
2567 2832 0.670546 AATTGTCTGTCGTCCAGCCG 60.671 55.000 0.79 0.00 41.25 5.52
2570 2835 2.674852 CCATGAATTGTCTGTCGTCCAG 59.325 50.000 0.00 0.00 42.97 3.86
2571 2836 2.698803 CCATGAATTGTCTGTCGTCCA 58.301 47.619 0.00 0.00 0.00 4.02
2572 2837 1.398390 GCCATGAATTGTCTGTCGTCC 59.602 52.381 0.00 0.00 0.00 4.79
2575 2840 2.349590 TCAGCCATGAATTGTCTGTCG 58.650 47.619 0.00 0.00 30.61 4.35
2586 2851 2.924757 CTGAGCCTATTCAGCCATGA 57.075 50.000 0.00 0.00 38.28 3.07
2592 2857 2.641305 AGCAAAGCTGAGCCTATTCAG 58.359 47.619 0.00 0.00 45.85 3.02
2595 2860 4.952335 ACAATTAGCAAAGCTGAGCCTATT 59.048 37.500 0.00 4.96 40.10 1.73
2598 2863 2.490903 CACAATTAGCAAAGCTGAGCCT 59.509 45.455 0.00 0.00 40.10 4.58
2600 2865 2.094854 AGCACAATTAGCAAAGCTGAGC 60.095 45.455 0.00 0.00 40.10 4.26
2601 2866 3.844577 AGCACAATTAGCAAAGCTGAG 57.155 42.857 1.04 0.00 40.10 3.35
2602 2867 3.365264 CGAAGCACAATTAGCAAAGCTGA 60.365 43.478 1.04 0.00 40.10 4.26
2605 2870 2.911102 GTCGAAGCACAATTAGCAAAGC 59.089 45.455 5.04 0.00 0.00 3.51
2606 2871 4.410492 AGTCGAAGCACAATTAGCAAAG 57.590 40.909 5.04 0.00 0.00 2.77
2611 2876 8.749841 AGCTAATATAGTCGAAGCACAATTAG 57.250 34.615 5.86 7.24 35.63 1.73
2612 2877 9.542462 AAAGCTAATATAGTCGAAGCACAATTA 57.458 29.630 5.86 0.00 35.63 1.40
2614 2879 7.519008 GCAAAGCTAATATAGTCGAAGCACAAT 60.519 37.037 5.86 0.00 35.63 2.71
2615 2880 6.238103 GCAAAGCTAATATAGTCGAAGCACAA 60.238 38.462 5.86 0.00 35.63 3.33
2616 2881 5.234329 GCAAAGCTAATATAGTCGAAGCACA 59.766 40.000 5.86 0.00 35.63 4.57
2617 2882 5.610552 CGCAAAGCTAATATAGTCGAAGCAC 60.611 44.000 5.86 0.00 35.63 4.40
2619 2884 4.143305 CCGCAAAGCTAATATAGTCGAAGC 60.143 45.833 0.00 0.00 0.00 3.86
2620 2885 4.982916 ACCGCAAAGCTAATATAGTCGAAG 59.017 41.667 0.00 0.00 0.00 3.79
2623 2888 3.361053 CGACCGCAAAGCTAATATAGTCG 59.639 47.826 9.66 9.66 38.63 4.18
2624 2889 4.543692 TCGACCGCAAAGCTAATATAGTC 58.456 43.478 0.00 0.00 0.00 2.59
2625 2890 4.579454 TCGACCGCAAAGCTAATATAGT 57.421 40.909 0.00 0.00 0.00 2.12
2626 2891 5.900339 TTTCGACCGCAAAGCTAATATAG 57.100 39.130 0.00 0.00 0.00 1.31
2627 2892 6.924612 TGTATTTCGACCGCAAAGCTAATATA 59.075 34.615 0.00 0.00 0.00 0.86
2628 2893 5.756347 TGTATTTCGACCGCAAAGCTAATAT 59.244 36.000 0.00 0.00 0.00 1.28
2629 2894 5.005971 GTGTATTTCGACCGCAAAGCTAATA 59.994 40.000 0.00 0.00 0.00 0.98
2631 2896 3.123959 GTGTATTTCGACCGCAAAGCTAA 59.876 43.478 0.00 0.00 0.00 3.09
2632 2897 2.669434 GTGTATTTCGACCGCAAAGCTA 59.331 45.455 0.00 0.00 0.00 3.32
2634 2899 1.463444 AGTGTATTTCGACCGCAAAGC 59.537 47.619 0.00 0.00 0.00 3.51
2635 2900 3.806316 AAGTGTATTTCGACCGCAAAG 57.194 42.857 0.00 0.00 0.00 2.77
2636 2901 4.136517 GAAAGTGTATTTCGACCGCAAA 57.863 40.909 0.00 0.00 0.00 3.68
2637 2902 3.799137 GAAAGTGTATTTCGACCGCAA 57.201 42.857 0.00 0.00 0.00 4.85
2649 2914 8.938906 GGTAATTGTTCTATTTCCGAAAGTGTA 58.061 33.333 0.00 0.00 0.00 2.90
2651 2916 8.040716 AGGTAATTGTTCTATTTCCGAAAGTG 57.959 34.615 0.00 0.00 32.14 3.16
2655 2920 9.374838 GACTAAGGTAATTGTTCTATTTCCGAA 57.625 33.333 0.00 0.00 32.14 4.30
2656 2921 8.755977 AGACTAAGGTAATTGTTCTATTTCCGA 58.244 33.333 0.00 0.00 32.14 4.55
2657 2922 8.943909 AGACTAAGGTAATTGTTCTATTTCCG 57.056 34.615 0.00 0.00 32.14 4.30
2663 2928 9.924650 GAAAGTGAGACTAAGGTAATTGTTCTA 57.075 33.333 0.00 0.00 0.00 2.10
2664 2929 8.429641 TGAAAGTGAGACTAAGGTAATTGTTCT 58.570 33.333 0.00 0.00 0.00 3.01
2665 2930 8.603242 TGAAAGTGAGACTAAGGTAATTGTTC 57.397 34.615 0.00 0.00 0.00 3.18
2666 2931 9.003658 CATGAAAGTGAGACTAAGGTAATTGTT 57.996 33.333 0.00 0.00 0.00 2.83
2667 2932 8.375506 TCATGAAAGTGAGACTAAGGTAATTGT 58.624 33.333 0.00 0.00 0.00 2.71
2668 2933 8.777865 TCATGAAAGTGAGACTAAGGTAATTG 57.222 34.615 0.00 0.00 0.00 2.32
2669 2934 9.965902 AATCATGAAAGTGAGACTAAGGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2670 2935 9.388506 CAATCATGAAAGTGAGACTAAGGTAAT 57.611 33.333 0.00 0.00 0.00 1.89
2671 2936 8.593679 TCAATCATGAAAGTGAGACTAAGGTAA 58.406 33.333 0.00 0.00 30.99 2.85
2672 2937 8.134202 TCAATCATGAAAGTGAGACTAAGGTA 57.866 34.615 0.00 0.00 30.99 3.08
2673 2938 7.009179 TCAATCATGAAAGTGAGACTAAGGT 57.991 36.000 0.00 0.00 30.99 3.50
2674 2939 7.767659 TCATCAATCATGAAAGTGAGACTAAGG 59.232 37.037 0.00 0.00 38.68 2.69
2675 2940 8.602328 GTCATCAATCATGAAAGTGAGACTAAG 58.398 37.037 0.00 0.00 43.52 2.18
2676 2941 8.096414 TGTCATCAATCATGAAAGTGAGACTAA 58.904 33.333 21.13 11.04 43.52 2.24
2677 2942 7.547019 GTGTCATCAATCATGAAAGTGAGACTA 59.453 37.037 21.13 13.51 43.52 2.59
2678 2943 6.370994 GTGTCATCAATCATGAAAGTGAGACT 59.629 38.462 21.13 6.17 43.52 3.24
2679 2944 6.148315 TGTGTCATCAATCATGAAAGTGAGAC 59.852 38.462 16.87 16.87 43.52 3.36
2680 2945 6.232692 TGTGTCATCAATCATGAAAGTGAGA 58.767 36.000 0.00 0.00 43.52 3.27
2681 2946 6.490566 TGTGTCATCAATCATGAAAGTGAG 57.509 37.500 0.00 0.00 43.52 3.51
2682 2947 8.741603 ATATGTGTCATCAATCATGAAAGTGA 57.258 30.769 0.00 4.48 43.52 3.41
2712 2977 9.809096 CTGAAGTCTAAGCTTATGAATGTAAGA 57.191 33.333 6.64 0.00 34.34 2.10
2713 2978 8.547069 GCTGAAGTCTAAGCTTATGAATGTAAG 58.453 37.037 6.64 6.35 36.47 2.34
2714 2979 8.425577 GCTGAAGTCTAAGCTTATGAATGTAA 57.574 34.615 6.64 0.00 36.47 2.41
2716 2981 6.917217 GCTGAAGTCTAAGCTTATGAATGT 57.083 37.500 6.64 0.00 36.47 2.71
2732 2997 3.073650 AGGAGGAATTCACAAGCTGAAGT 59.926 43.478 7.93 0.00 42.36 3.01
2734 2999 3.795688 AGGAGGAATTCACAAGCTGAA 57.204 42.857 7.93 0.00 43.28 3.02
2736 3001 5.884792 AGAAATAGGAGGAATTCACAAGCTG 59.115 40.000 7.93 0.00 0.00 4.24
2748 3066 2.569853 TGCGGTCAAAGAAATAGGAGGA 59.430 45.455 0.00 0.00 0.00 3.71
2749 3067 2.985896 TGCGGTCAAAGAAATAGGAGG 58.014 47.619 0.00 0.00 0.00 4.30
2760 3078 5.233476 CGACTATATTAGCTTTGCGGTCAAA 59.767 40.000 0.00 0.00 39.67 2.69
2761 3079 4.743151 CGACTATATTAGCTTTGCGGTCAA 59.257 41.667 0.00 0.00 0.00 3.18
2766 3271 4.444388 TGCTTCGACTATATTAGCTTTGCG 59.556 41.667 0.00 0.00 33.15 4.85
2852 3366 8.719478 CTTAATTAAGCATTTAAGCCATCGAG 57.281 34.615 12.15 0.00 32.58 4.04
2913 3427 5.140454 AGTGCCAACTAGGATTTTCAAAGT 58.860 37.500 0.00 0.00 41.22 2.66
2916 3430 4.518970 GTGAGTGCCAACTAGGATTTTCAA 59.481 41.667 0.00 0.00 41.22 2.69
2952 3467 0.532862 CAACCGTTGTGGCAGAGAGT 60.533 55.000 2.87 0.00 43.94 3.24
2979 3500 3.758554 CCTTGTTAAAGTCTGGGGACATG 59.241 47.826 0.00 0.00 44.36 3.21
2990 3511 2.100749 GGTGTTGCAGCCTTGTTAAAGT 59.899 45.455 0.00 0.00 0.00 2.66
2995 3516 0.175531 GTTGGTGTTGCAGCCTTGTT 59.824 50.000 0.00 0.00 0.00 2.83
2996 3517 0.969917 TGTTGGTGTTGCAGCCTTGT 60.970 50.000 0.00 0.00 0.00 3.16
3034 3555 2.426738 TGGTTTGTTTCTCCAGCACTTG 59.573 45.455 0.00 0.00 0.00 3.16
3036 3557 2.024414 GTGGTTTGTTTCTCCAGCACT 58.976 47.619 0.00 0.00 35.28 4.40
3037 3558 1.268539 CGTGGTTTGTTTCTCCAGCAC 60.269 52.381 0.00 0.00 34.89 4.40
3051 3572 3.121030 GCATCGCTGCTCGTGGTT 61.121 61.111 3.51 0.00 45.32 3.67
3091 3612 1.902938 AGGGCTTTTGAAGAGCAGAC 58.097 50.000 10.00 0.00 41.89 3.51
3120 3641 6.789268 TCCTTTGGACATTCAGGAAAAGATA 58.211 36.000 0.00 0.00 32.19 1.98
3121 3642 5.644188 TCCTTTGGACATTCAGGAAAAGAT 58.356 37.500 0.00 0.00 32.19 2.40
3145 3666 6.756542 GGCAAAATCCAGTTTTACATATGTCC 59.243 38.462 12.68 0.00 37.93 4.02
3146 3667 7.275560 GTGGCAAAATCCAGTTTTACATATGTC 59.724 37.037 12.68 0.00 37.93 3.06
3147 3668 7.096551 GTGGCAAAATCCAGTTTTACATATGT 58.903 34.615 13.93 13.93 37.93 2.29
3148 3669 7.063308 GTGTGGCAAAATCCAGTTTTACATATG 59.937 37.037 0.00 0.00 37.93 1.78
3149 3670 7.096551 GTGTGGCAAAATCCAGTTTTACATAT 58.903 34.615 0.00 0.00 37.93 1.78
3150 3671 6.040955 TGTGTGGCAAAATCCAGTTTTACATA 59.959 34.615 0.00 0.00 37.93 2.29
3151 3672 5.163364 TGTGTGGCAAAATCCAGTTTTACAT 60.163 36.000 0.00 0.00 37.93 2.29
3152 3673 4.160439 TGTGTGGCAAAATCCAGTTTTACA 59.840 37.500 0.00 0.00 37.93 2.41
3153 3674 4.688021 TGTGTGGCAAAATCCAGTTTTAC 58.312 39.130 0.00 0.00 37.93 2.01
3154 3675 5.344743 TTGTGTGGCAAAATCCAGTTTTA 57.655 34.783 0.00 0.00 37.93 1.52
3155 3676 3.902881 TGTGTGGCAAAATCCAGTTTT 57.097 38.095 0.00 0.00 40.59 2.43
3156 3677 3.902881 TTGTGTGGCAAAATCCAGTTT 57.097 38.095 0.00 0.00 36.67 2.66
3157 3678 3.902881 TTTGTGTGGCAAAATCCAGTT 57.097 38.095 0.00 0.00 43.39 3.16
3165 3686 3.261897 TCTTTTCCCTTTTGTGTGGCAAA 59.738 39.130 0.00 0.00 44.52 3.68
3166 3687 2.834549 TCTTTTCCCTTTTGTGTGGCAA 59.165 40.909 0.00 0.00 34.87 4.52
3167 3688 2.461695 TCTTTTCCCTTTTGTGTGGCA 58.538 42.857 0.00 0.00 0.00 4.92
3168 3689 3.535280 TTCTTTTCCCTTTTGTGTGGC 57.465 42.857 0.00 0.00 0.00 5.01
3169 3690 6.677675 GCAATTTTCTTTTCCCTTTTGTGTGG 60.678 38.462 0.00 0.00 0.00 4.17
3170 3691 6.128063 TGCAATTTTCTTTTCCCTTTTGTGTG 60.128 34.615 0.00 0.00 0.00 3.82
3171 3692 5.942826 TGCAATTTTCTTTTCCCTTTTGTGT 59.057 32.000 0.00 0.00 0.00 3.72
3172 3693 6.434018 TGCAATTTTCTTTTCCCTTTTGTG 57.566 33.333 0.00 0.00 0.00 3.33
3173 3694 6.658816 AGTTGCAATTTTCTTTTCCCTTTTGT 59.341 30.769 0.59 0.00 0.00 2.83
3174 3695 6.968335 CAGTTGCAATTTTCTTTTCCCTTTTG 59.032 34.615 0.59 0.00 0.00 2.44
3175 3696 6.883756 TCAGTTGCAATTTTCTTTTCCCTTTT 59.116 30.769 0.59 0.00 0.00 2.27
3176 3697 6.316140 GTCAGTTGCAATTTTCTTTTCCCTTT 59.684 34.615 0.59 0.00 0.00 3.11
3177 3698 5.817296 GTCAGTTGCAATTTTCTTTTCCCTT 59.183 36.000 0.59 0.00 0.00 3.95
3178 3699 5.129320 AGTCAGTTGCAATTTTCTTTTCCCT 59.871 36.000 0.59 0.00 0.00 4.20
3179 3700 5.234972 CAGTCAGTTGCAATTTTCTTTTCCC 59.765 40.000 0.59 0.00 0.00 3.97
3180 3701 5.277011 GCAGTCAGTTGCAATTTTCTTTTCC 60.277 40.000 0.59 0.00 43.53 3.13
3181 3702 5.521372 AGCAGTCAGTTGCAATTTTCTTTTC 59.479 36.000 0.59 0.00 46.47 2.29
3182 3703 5.292589 CAGCAGTCAGTTGCAATTTTCTTTT 59.707 36.000 0.59 0.00 46.47 2.27
3183 3704 4.807304 CAGCAGTCAGTTGCAATTTTCTTT 59.193 37.500 0.59 0.00 46.47 2.52
3184 3705 4.098349 TCAGCAGTCAGTTGCAATTTTCTT 59.902 37.500 0.59 0.00 46.47 2.52
3185 3706 3.633525 TCAGCAGTCAGTTGCAATTTTCT 59.366 39.130 0.59 0.00 46.47 2.52
3186 3707 3.968649 TCAGCAGTCAGTTGCAATTTTC 58.031 40.909 0.59 0.00 46.47 2.29
3187 3708 3.797865 GCTCAGCAGTCAGTTGCAATTTT 60.798 43.478 0.59 0.00 46.47 1.82
3188 3709 2.288030 GCTCAGCAGTCAGTTGCAATTT 60.288 45.455 0.59 0.00 46.47 1.82
3189 3710 1.268899 GCTCAGCAGTCAGTTGCAATT 59.731 47.619 0.59 0.00 46.47 2.32
3190 3711 0.879765 GCTCAGCAGTCAGTTGCAAT 59.120 50.000 0.59 0.00 46.47 3.56
3191 3712 0.179037 AGCTCAGCAGTCAGTTGCAA 60.179 50.000 0.00 0.00 46.47 4.08
3192 3713 0.681175 TAGCTCAGCAGTCAGTTGCA 59.319 50.000 0.00 0.00 46.47 4.08
3193 3714 1.337635 ACTAGCTCAGCAGTCAGTTGC 60.338 52.381 0.00 0.00 44.41 4.17
3194 3715 2.735663 CAACTAGCTCAGCAGTCAGTTG 59.264 50.000 14.98 14.98 37.58 3.16
3195 3716 2.869636 GCAACTAGCTCAGCAGTCAGTT 60.870 50.000 0.00 0.00 41.15 3.16
3196 3717 1.337635 GCAACTAGCTCAGCAGTCAGT 60.338 52.381 0.00 0.00 41.15 3.41
3197 3718 1.337541 TGCAACTAGCTCAGCAGTCAG 60.338 52.381 0.00 0.00 45.94 3.51
3198 3719 0.681175 TGCAACTAGCTCAGCAGTCA 59.319 50.000 0.00 0.00 45.94 3.41
3199 3720 1.074752 GTGCAACTAGCTCAGCAGTC 58.925 55.000 0.00 0.00 45.94 3.51
3215 3736 6.308766 CCAGTTTCTTTTTACATATGCAGTGC 59.691 38.462 8.58 8.58 0.00 4.40
3284 3805 3.372730 GCCCTGATGCGTGCCAAA 61.373 61.111 0.00 0.00 0.00 3.28
3302 3823 4.201950 CGACACAATCCTTCCATCCATTTC 60.202 45.833 0.00 0.00 0.00 2.17
3311 3832 1.079503 GTCAGCGACACAATCCTTCC 58.920 55.000 4.20 0.00 32.09 3.46
3324 3845 5.164158 GCACATGTTTTTAATCTTGTCAGCG 60.164 40.000 0.00 0.00 0.00 5.18
3330 3851 5.218885 TCCGTGCACATGTTTTTAATCTTG 58.781 37.500 18.64 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.