Multiple sequence alignment - TraesCS6D01G214200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G214200 chr6D 100.000 3236 0 0 1 3236 304693908 304690673 0.000000e+00 5976.0
1 TraesCS6D01G214200 chr6D 96.154 52 2 0 614 665 304693340 304693289 5.750000e-13 86.1
2 TraesCS6D01G214200 chr6B 95.202 2355 80 14 869 3214 472708560 472710890 0.000000e+00 3692.0
3 TraesCS6D01G214200 chr6A 92.302 2650 123 32 614 3236 410834885 410837480 0.000000e+00 3688.0
4 TraesCS6D01G214200 chr6A 87.800 500 49 6 116 614 410834442 410834930 2.800000e-160 575.0
5 TraesCS6D01G214200 chr6A 79.062 320 36 12 132 444 410834824 410835119 1.180000e-44 191.0
6 TraesCS6D01G214200 chr6A 87.681 138 16 1 448 584 410834394 410834531 3.340000e-35 159.0
7 TraesCS6D01G214200 chr6A 88.679 106 8 4 1 102 204100740 204100635 3.390000e-25 126.0
8 TraesCS6D01G214200 chr5B 83.051 177 21 3 2259 2435 539928622 539928789 5.590000e-33 152.0
9 TraesCS6D01G214200 chr5B 87.288 118 11 4 1 114 666709774 666709657 7.280000e-27 132.0
10 TraesCS6D01G214200 chr5A 83.140 172 19 6 2259 2429 559738621 559738783 7.230000e-32 148.0
11 TraesCS6D01G214200 chr5A 86.408 103 14 0 3061 3163 544724733 544724631 2.640000e-21 113.0
12 TraesCS6D01G214200 chr5A 100.000 28 0 0 476 503 548858573 548858546 6.000000e-03 52.8
13 TraesCS6D01G214200 chr3B 85.981 107 13 2 1 105 363125898 363125792 2.640000e-21 113.0
14 TraesCS6D01G214200 chr2D 85.714 112 10 6 1 107 239782685 239782575 2.640000e-21 113.0
15 TraesCS6D01G214200 chr2D 90.385 52 5 0 452 503 97228932 97228983 5.790000e-08 69.4
16 TraesCS6D01G214200 chr7D 86.458 96 11 2 509 603 562192307 562192213 1.590000e-18 104.0
17 TraesCS6D01G214200 chr7D 86.458 96 11 2 509 603 618927136 618927230 1.590000e-18 104.0
18 TraesCS6D01G214200 chr7D 85.263 95 14 0 509 603 22628731 22628637 7.390000e-17 99.0
19 TraesCS6D01G214200 chr7D 93.878 49 3 0 455 503 135944794 135944746 1.250000e-09 75.0
20 TraesCS6D01G214200 chr4D 86.316 95 12 1 510 603 396958126 396958220 5.710000e-18 102.0
21 TraesCS6D01G214200 chr7A 86.170 94 12 1 511 603 115007712 115007619 2.050000e-17 100.0
22 TraesCS6D01G214200 chr7A 85.000 100 13 2 505 603 649157530 649157432 2.050000e-17 100.0
23 TraesCS6D01G214200 chr4A 84.694 98 15 0 506 603 665472540 665472637 7.390000e-17 99.0
24 TraesCS6D01G214200 chr4B 84.615 104 9 7 1 99 440963296 440963195 2.660000e-16 97.1
25 TraesCS6D01G214200 chr4B 90.385 52 5 0 452 503 169914303 169914354 5.790000e-08 69.4
26 TraesCS6D01G214200 chr7B 93.878 49 3 0 455 503 748425668 748425620 1.250000e-09 75.0
27 TraesCS6D01G214200 chr5D 89.286 56 5 1 452 506 13885303 13885248 5.790000e-08 69.4
28 TraesCS6D01G214200 chr3D 90.385 52 5 0 452 503 496845572 496845623 5.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G214200 chr6D 304690673 304693908 3235 True 3031.05 5976 98.07700 1 3236 2 chr6D.!!$R1 3235
1 TraesCS6D01G214200 chr6B 472708560 472710890 2330 False 3692.00 3692 95.20200 869 3214 1 chr6B.!!$F1 2345
2 TraesCS6D01G214200 chr6A 410834394 410837480 3086 False 1153.25 3688 86.71125 116 3236 4 chr6A.!!$F1 3120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.029267 AAGGGGAGAGGAGCCATCAT 60.029 55.0 0.00 0.00 0.0 2.45 F
877 883 0.101219 GCCCCGTACGGTGTAGTTAG 59.899 60.0 31.24 14.05 0.0 2.34 F
1164 1177 0.673644 CCATGTTCTTCGACGCCCTT 60.674 55.0 0.00 0.00 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1861 0.629596 TCCTCTTCTTCCTCCGCCTA 59.370 55.000 0.0 0.0 0.00 3.93 R
1893 1909 1.153289 CTGCATCCGCTTAGCCTGT 60.153 57.895 0.0 0.0 39.64 4.00 R
2528 2544 2.185004 AACATTTCCTCGGACTGTGG 57.815 50.000 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.061357 GGAGAAGTCCCAATGTAGTAGC 57.939 50.000 0.00 0.00 36.76 3.58
26 27 2.772515 AGAAGTCCCAATGTAGTAGCCC 59.227 50.000 0.00 0.00 0.00 5.19
27 28 2.263895 AGTCCCAATGTAGTAGCCCA 57.736 50.000 0.00 0.00 0.00 5.36
28 29 2.776665 AGTCCCAATGTAGTAGCCCAT 58.223 47.619 0.00 0.00 0.00 4.00
29 30 2.706190 AGTCCCAATGTAGTAGCCCATC 59.294 50.000 0.00 0.00 0.00 3.51
30 31 2.054799 TCCCAATGTAGTAGCCCATCC 58.945 52.381 0.00 0.00 0.00 3.51
31 32 1.774254 CCCAATGTAGTAGCCCATCCA 59.226 52.381 0.00 0.00 0.00 3.41
33 34 3.415212 CCAATGTAGTAGCCCATCCATG 58.585 50.000 0.00 0.00 0.00 3.66
47 48 3.940319 CATCCATGGAGGCTTAGATCAG 58.060 50.000 21.33 0.00 37.29 2.90
48 49 3.051940 TCCATGGAGGCTTAGATCAGT 57.948 47.619 11.44 0.00 37.29 3.41
50 51 2.224475 CCATGGAGGCTTAGATCAGTGG 60.224 54.545 5.56 0.00 0.00 4.00
51 52 2.550277 TGGAGGCTTAGATCAGTGGA 57.450 50.000 0.00 0.00 0.00 4.02
52 53 2.392662 TGGAGGCTTAGATCAGTGGAG 58.607 52.381 0.00 0.00 0.00 3.86
53 54 1.069978 GGAGGCTTAGATCAGTGGAGC 59.930 57.143 0.00 0.00 0.00 4.70
54 55 3.696306 GGCTTAGATCAGTGGAGCC 57.304 57.895 8.43 8.43 45.21 4.70
57 58 2.492012 GCTTAGATCAGTGGAGCCATG 58.508 52.381 0.00 0.00 0.00 3.66
58 59 2.809665 GCTTAGATCAGTGGAGCCATGG 60.810 54.545 7.63 7.63 0.00 3.66
59 60 2.477104 TAGATCAGTGGAGCCATGGA 57.523 50.000 18.40 0.00 0.00 3.41
60 61 1.588239 AGATCAGTGGAGCCATGGAA 58.412 50.000 18.40 0.00 0.00 3.53
61 62 1.489649 AGATCAGTGGAGCCATGGAAG 59.510 52.381 18.40 0.00 0.00 3.46
62 63 1.487976 GATCAGTGGAGCCATGGAAGA 59.512 52.381 18.40 1.76 0.00 2.87
63 64 1.588239 TCAGTGGAGCCATGGAAGAT 58.412 50.000 18.40 0.00 0.00 2.40
64 65 1.918262 TCAGTGGAGCCATGGAAGATT 59.082 47.619 18.40 0.00 0.00 2.40
65 66 2.022195 CAGTGGAGCCATGGAAGATTG 58.978 52.381 18.40 1.93 0.00 2.67
66 67 1.064166 AGTGGAGCCATGGAAGATTGG 60.064 52.381 18.40 0.00 36.03 3.16
67 68 1.002069 TGGAGCCATGGAAGATTGGT 58.998 50.000 18.40 0.00 35.34 3.67
68 69 1.341285 TGGAGCCATGGAAGATTGGTG 60.341 52.381 18.40 0.00 35.34 4.17
69 70 1.396653 GAGCCATGGAAGATTGGTGG 58.603 55.000 18.40 0.00 35.34 4.61
70 71 0.706433 AGCCATGGAAGATTGGTGGT 59.294 50.000 18.40 0.00 35.34 4.16
71 72 0.819582 GCCATGGAAGATTGGTGGTG 59.180 55.000 18.40 0.00 35.34 4.17
72 73 1.477553 CCATGGAAGATTGGTGGTGG 58.522 55.000 5.56 0.00 0.00 4.61
73 74 1.272648 CCATGGAAGATTGGTGGTGGT 60.273 52.381 5.56 0.00 0.00 4.16
74 75 2.528564 CATGGAAGATTGGTGGTGGTT 58.471 47.619 0.00 0.00 0.00 3.67
75 76 1.993956 TGGAAGATTGGTGGTGGTTG 58.006 50.000 0.00 0.00 0.00 3.77
76 77 1.256812 GGAAGATTGGTGGTGGTTGG 58.743 55.000 0.00 0.00 0.00 3.77
77 78 1.480498 GGAAGATTGGTGGTGGTTGGT 60.480 52.381 0.00 0.00 0.00 3.67
78 79 1.613437 GAAGATTGGTGGTGGTTGGTG 59.387 52.381 0.00 0.00 0.00 4.17
79 80 0.178964 AGATTGGTGGTGGTTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
80 81 1.152355 ATTGGTGGTGGTTGGTGGG 60.152 57.895 0.00 0.00 0.00 4.61
81 82 1.955458 ATTGGTGGTGGTTGGTGGGT 61.955 55.000 0.00 0.00 0.00 4.51
82 83 2.520741 GGTGGTGGTTGGTGGGTG 60.521 66.667 0.00 0.00 0.00 4.61
83 84 2.598467 GTGGTGGTTGGTGGGTGA 59.402 61.111 0.00 0.00 0.00 4.02
84 85 1.152830 GTGGTGGTTGGTGGGTGAT 59.847 57.895 0.00 0.00 0.00 3.06
85 86 1.152599 TGGTGGTTGGTGGGTGATG 59.847 57.895 0.00 0.00 0.00 3.07
86 87 1.606313 GGTGGTTGGTGGGTGATGG 60.606 63.158 0.00 0.00 0.00 3.51
87 88 1.606313 GTGGTTGGTGGGTGATGGG 60.606 63.158 0.00 0.00 0.00 4.00
88 89 2.037208 GGTTGGTGGGTGATGGGG 59.963 66.667 0.00 0.00 0.00 4.96
89 90 2.037208 GTTGGTGGGTGATGGGGG 59.963 66.667 0.00 0.00 0.00 5.40
103 104 2.612251 GGGGGAGAGGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
104 105 2.015726 GGGGGAGAGGGAGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
105 106 1.595058 GGGGGAGAGGGAGGAGAGAA 61.595 65.000 0.00 0.00 0.00 2.87
106 107 0.105709 GGGGAGAGGGAGGAGAGAAG 60.106 65.000 0.00 0.00 0.00 2.85
107 108 0.105709 GGGAGAGGGAGGAGAGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
108 109 0.105709 GGAGAGGGAGGAGAGAAGGG 60.106 65.000 0.00 0.00 0.00 3.95
109 110 0.105709 GAGAGGGAGGAGAGAAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
110 111 0.556380 AGAGGGAGGAGAGAAGGGGA 60.556 60.000 0.00 0.00 0.00 4.81
111 112 0.105709 GAGGGAGGAGAGAAGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
112 113 0.556380 AGGGAGGAGAGAAGGGGAGA 60.556 60.000 0.00 0.00 0.00 3.71
113 114 0.105709 GGGAGGAGAGAAGGGGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
114 115 0.105709 GGAGGAGAGAAGGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
115 116 0.930726 GAGGAGAGAAGGGGAGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
116 117 0.933700 AGGAGAGAAGGGGAGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
117 118 0.759060 GGAGAGAAGGGGAGAGGAGC 60.759 65.000 0.00 0.00 0.00 4.70
118 119 0.759060 GAGAGAAGGGGAGAGGAGCC 60.759 65.000 0.00 0.00 0.00 4.70
119 120 1.002274 GAGAAGGGGAGAGGAGCCA 59.998 63.158 0.00 0.00 0.00 4.75
120 121 0.399806 GAGAAGGGGAGAGGAGCCAT 60.400 60.000 0.00 0.00 0.00 4.40
121 122 0.399806 AGAAGGGGAGAGGAGCCATC 60.400 60.000 0.00 0.00 0.00 3.51
122 123 0.692419 GAAGGGGAGAGGAGCCATCA 60.692 60.000 0.00 0.00 0.00 3.07
123 124 0.029267 AAGGGGAGAGGAGCCATCAT 60.029 55.000 0.00 0.00 0.00 2.45
124 125 0.029267 AGGGGAGAGGAGCCATCATT 60.029 55.000 0.00 0.00 0.00 2.57
125 126 0.399833 GGGGAGAGGAGCCATCATTC 59.600 60.000 0.00 0.00 0.00 2.67
126 127 0.399833 GGGAGAGGAGCCATCATTCC 59.600 60.000 0.00 0.00 0.00 3.01
127 128 1.433121 GGAGAGGAGCCATCATTCCT 58.567 55.000 0.00 0.00 46.35 3.36
128 129 1.773653 GGAGAGGAGCCATCATTCCTT 59.226 52.381 0.00 0.00 43.76 3.36
129 130 2.486907 GGAGAGGAGCCATCATTCCTTG 60.487 54.545 0.00 0.00 43.76 3.61
130 131 2.437281 GAGAGGAGCCATCATTCCTTGA 59.563 50.000 0.00 0.00 43.76 3.02
133 134 2.149578 GGAGCCATCATTCCTTGATCG 58.850 52.381 0.00 0.00 43.40 3.69
158 159 1.461127 CTCGCTTCAGTGTTTGTAGCC 59.539 52.381 1.12 0.00 44.63 3.93
163 164 1.860676 TCAGTGTTTGTAGCCGTCAC 58.139 50.000 0.00 0.00 0.00 3.67
181 182 4.528920 GTCACTAGGTGATCTACAGACCT 58.471 47.826 6.87 6.87 44.63 3.85
189 190 7.097623 AGGTGATCTACAGACCTAGATGTAT 57.902 40.000 0.00 0.00 34.21 2.29
229 230 9.002600 TGATGCTATTTGTACACCATGATAATC 57.997 33.333 0.00 0.00 0.00 1.75
231 232 7.213678 TGCTATTTGTACACCATGATAATCGA 58.786 34.615 0.00 0.00 0.00 3.59
299 300 2.509569 TGTGATGCCCTTCGCTAAAAA 58.490 42.857 0.00 0.00 38.78 1.94
320 321 5.859205 AAAATGAGTGATAGAAATGGGCC 57.141 39.130 0.00 0.00 0.00 5.80
322 323 2.115427 TGAGTGATAGAAATGGGCCGA 58.885 47.619 0.00 0.00 0.00 5.54
324 325 3.070018 GAGTGATAGAAATGGGCCGATG 58.930 50.000 0.00 0.00 0.00 3.84
335 336 1.147191 TGGGCCGATGGAGTACTCTAT 59.853 52.381 20.54 20.54 33.28 1.98
356 357 1.265905 GGCACACGAAAACCTTAGGTG 59.734 52.381 3.99 0.00 35.34 4.00
365 366 4.220163 CGAAAACCTTAGGTGAGAGGTAGT 59.780 45.833 3.99 0.00 45.32 2.73
400 401 1.107945 GGTGAGAGGTAGGTGCTCTC 58.892 60.000 0.00 0.00 42.69 3.20
433 434 6.751514 GAGATATAATTCTCTCGGCTCAGA 57.248 41.667 0.00 0.00 39.27 3.27
434 435 7.333528 GAGATATAATTCTCTCGGCTCAGAT 57.666 40.000 0.00 0.00 39.27 2.90
444 445 0.826715 CGGCTCAGATGGAAGGAAGA 59.173 55.000 0.00 0.00 0.00 2.87
451 452 2.765135 CAGATGGAAGGAAGAGCTCAGA 59.235 50.000 17.77 0.00 0.00 3.27
462 464 4.082679 GGAAGAGCTCAGAAACTCGTAGAA 60.083 45.833 17.77 0.00 37.99 2.10
513 515 2.225068 AGCCATGATTACGTCTTCGG 57.775 50.000 0.00 0.00 41.85 4.30
535 537 2.390938 TCGCTTCAGTGTTTGTAGTCG 58.609 47.619 0.00 0.00 0.00 4.18
537 539 2.153247 CGCTTCAGTGTTTGTAGTCGTC 59.847 50.000 0.00 0.00 0.00 4.20
539 541 3.060473 GCTTCAGTGTTTGTAGTCGTCAC 60.060 47.826 0.00 0.00 0.00 3.67
556 558 3.688235 GTCACTAGGTGGTCTACAGACT 58.312 50.000 9.15 0.00 44.20 3.24
562 564 7.126879 TCACTAGGTGGTCTACAGACTTAGATA 59.873 40.741 9.15 0.00 44.20 1.98
600 602 9.701098 ATTTTTGATGCTATTTATACTGCCATG 57.299 29.630 0.00 0.00 0.00 3.66
601 603 8.462589 TTTTGATGCTATTTATACTGCCATGA 57.537 30.769 0.00 0.00 0.00 3.07
602 604 8.640063 TTTGATGCTATTTATACTGCCATGAT 57.360 30.769 0.00 0.00 0.00 2.45
603 605 9.737844 TTTGATGCTATTTATACTGCCATGATA 57.262 29.630 0.00 0.00 0.00 2.15
604 606 9.737844 TTGATGCTATTTATACTGCCATGATAA 57.262 29.630 0.00 0.00 0.00 1.75
605 607 9.910267 TGATGCTATTTATACTGCCATGATAAT 57.090 29.630 0.00 0.00 0.00 1.28
608 610 9.737844 TGCTATTTATACTGCCATGATAATTGA 57.262 29.630 0.00 0.00 0.00 2.57
727 729 3.939592 GACGGCCTTCAGTAAAAATAGCT 59.060 43.478 3.96 0.00 0.00 3.32
751 753 1.939934 CGAGCGATAAAAATGGGCTGA 59.060 47.619 0.00 0.00 33.40 4.26
753 755 3.607775 CGAGCGATAAAAATGGGCTGATG 60.608 47.826 0.00 0.00 33.40 3.07
766 768 1.609555 GGCTGATGGAGTACTCTACGG 59.390 57.143 21.88 17.32 0.00 4.02
772 774 0.455005 GGAGTACTCTACGGCACACC 59.545 60.000 21.88 0.00 0.00 4.16
837 843 5.646606 GATATAATTCTCTCGGCTCAGACC 58.353 45.833 0.00 0.00 0.00 3.85
838 844 1.859302 AATTCTCTCGGCTCAGACCT 58.141 50.000 0.00 0.00 0.00 3.85
839 845 1.398692 ATTCTCTCGGCTCAGACCTC 58.601 55.000 0.00 0.00 0.00 3.85
840 846 1.027255 TTCTCTCGGCTCAGACCTCG 61.027 60.000 0.00 0.00 0.00 4.63
841 847 1.450491 CTCTCGGCTCAGACCTCGA 60.450 63.158 0.00 0.00 0.00 4.04
842 848 1.711060 CTCTCGGCTCAGACCTCGAC 61.711 65.000 0.00 0.00 0.00 4.20
843 849 3.102107 CTCGGCTCAGACCTCGACG 62.102 68.421 0.00 0.00 0.00 5.12
844 850 3.432588 CGGCTCAGACCTCGACGT 61.433 66.667 0.00 0.00 0.00 4.34
845 851 2.486042 GGCTCAGACCTCGACGTC 59.514 66.667 5.18 5.18 0.00 4.34
847 853 2.098680 CTCAGACCTCGACGTCGC 59.901 66.667 32.19 18.35 37.85 5.19
848 854 2.358369 TCAGACCTCGACGTCGCT 60.358 61.111 32.19 20.35 37.85 4.93
850 856 3.488978 AGACCTCGACGTCGCTCG 61.489 66.667 32.19 22.18 46.00 5.03
871 877 4.692475 GCTTGCCCCGTACGGTGT 62.692 66.667 31.24 0.00 0.00 4.16
872 878 2.972267 CTTGCCCCGTACGGTGTA 59.028 61.111 31.24 18.72 0.00 2.90
873 879 1.153706 CTTGCCCCGTACGGTGTAG 60.154 63.158 31.24 17.87 0.00 2.74
874 880 1.880819 CTTGCCCCGTACGGTGTAGT 61.881 60.000 31.24 0.00 0.00 2.73
876 882 0.610509 TGCCCCGTACGGTGTAGTTA 60.611 55.000 31.24 8.78 0.00 2.24
877 883 0.101219 GCCCCGTACGGTGTAGTTAG 59.899 60.000 31.24 14.05 0.00 2.34
969 982 0.689623 CAGAGACAGCAAACCCCTCT 59.310 55.000 0.00 0.00 34.83 3.69
1164 1177 0.673644 CCATGTTCTTCGACGCCCTT 60.674 55.000 0.00 0.00 0.00 3.95
1185 1198 2.819550 CAGCTTATACCCCCGCGT 59.180 61.111 4.92 0.00 0.00 6.01
1434 1447 2.113433 CCAGGAGTCCGACGACGAT 61.113 63.158 9.28 0.00 44.28 3.73
1539 1555 2.760378 GGAGATGCAGATGGCCCCA 61.760 63.158 0.00 0.00 43.89 4.96
1713 1729 2.133858 AAGTGAAGGGGAAGGAGGAA 57.866 50.000 0.00 0.00 0.00 3.36
1812 1828 5.247110 GGAAGAGAAGGCACCAGATATCATA 59.753 44.000 5.32 0.00 0.00 2.15
1845 1861 2.978156 TGGTTGATCCAAAGGAAGCT 57.022 45.000 0.00 0.00 44.12 3.74
1893 1909 3.392616 AGAACAAGAAGAAGGAGCTGGAA 59.607 43.478 0.00 0.00 0.00 3.53
2229 2245 2.292267 CGCAAGGAAGGCTATGTCAAT 58.708 47.619 0.00 0.00 0.00 2.57
2282 2298 7.646130 GTGACTGAGTACTGTATCTGCTTTATC 59.354 40.741 0.00 0.00 0.00 1.75
2350 2366 4.896482 AGGTATCCAGATCTTGACTACCAC 59.104 45.833 22.87 9.83 36.69 4.16
2455 2471 9.430838 CATTGAGCTTAGATAAATTTGTCGAAG 57.569 33.333 23.96 23.96 35.33 3.79
2458 2474 9.214957 TGAGCTTAGATAAATTTGTCGAAGAAA 57.785 29.630 29.01 16.62 39.69 2.52
2482 2498 3.668447 ACTTCTGTGTGTGGCTTCATAG 58.332 45.455 0.00 0.00 0.00 2.23
2504 2520 6.702716 AGTTATCTCTAGCACTAGACCAAC 57.297 41.667 3.22 7.84 37.28 3.77
2558 2574 5.652014 TCCGAGGAAATGTTAATGATGCTTT 59.348 36.000 0.00 0.00 0.00 3.51
2560 2576 7.012327 TCCGAGGAAATGTTAATGATGCTTTAG 59.988 37.037 0.00 0.00 0.00 1.85
2598 2614 4.843728 TCTTTGTTATTCCTAGCAGTGGG 58.156 43.478 0.00 0.00 0.00 4.61
2651 2667 4.532126 TCAGTGAAGATGTTCTGGGTACAT 59.468 41.667 4.03 0.00 38.86 2.29
2677 2701 9.241919 TGCTTATCTGAATTCTTGGTAAATTGA 57.758 29.630 7.05 0.00 0.00 2.57
2708 2732 3.609853 TGCCCACTTCTCATCATGTTAC 58.390 45.455 0.00 0.00 0.00 2.50
2848 2874 8.719645 ACTCTCTGCAGTTATATCCTAGATTT 57.280 34.615 14.67 0.00 0.00 2.17
2913 2939 8.132362 GTGTTTATTCATTTGTGTCCACTGTTA 58.868 33.333 0.00 0.00 0.00 2.41
3133 3159 7.513436 AGGATCATCTCTCTCCACAAGATATTT 59.487 37.037 0.00 0.00 32.19 1.40
3185 3211 4.831674 ATATGAATCATGGCGGATGAGA 57.168 40.909 5.91 0.00 44.54 3.27
3227 3253 2.526120 GCCTTAGTGCGCATCCGTC 61.526 63.158 15.91 0.00 36.67 4.79
3230 3256 1.202973 CTTAGTGCGCATCCGTCGAG 61.203 60.000 15.91 1.30 36.67 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.181464 GGGCTACTACATTGGGACTTCTC 60.181 52.174 0.00 0.00 0.00 2.87
6 7 2.504175 TGGGCTACTACATTGGGACTTC 59.496 50.000 0.00 0.00 0.00 3.01
8 9 2.263895 TGGGCTACTACATTGGGACT 57.736 50.000 0.00 0.00 0.00 3.85
9 10 2.224548 GGATGGGCTACTACATTGGGAC 60.225 54.545 0.00 0.00 0.00 4.46
10 11 2.054799 GGATGGGCTACTACATTGGGA 58.945 52.381 0.00 0.00 0.00 4.37
11 12 1.774254 TGGATGGGCTACTACATTGGG 59.226 52.381 0.00 0.00 0.00 4.12
12 13 3.415212 CATGGATGGGCTACTACATTGG 58.585 50.000 0.00 0.00 0.00 3.16
13 14 3.415212 CCATGGATGGGCTACTACATTG 58.585 50.000 5.56 0.00 44.31 2.82
14 15 3.795688 CCATGGATGGGCTACTACATT 57.204 47.619 5.56 0.00 44.31 2.71
26 27 3.327172 ACTGATCTAAGCCTCCATGGATG 59.673 47.826 16.63 14.26 38.35 3.51
27 28 3.327172 CACTGATCTAAGCCTCCATGGAT 59.673 47.826 16.63 2.31 38.35 3.41
28 29 2.702478 CACTGATCTAAGCCTCCATGGA 59.298 50.000 15.27 15.27 38.35 3.41
29 30 2.224475 CCACTGATCTAAGCCTCCATGG 60.224 54.545 4.97 4.97 39.35 3.66
30 31 2.702478 TCCACTGATCTAAGCCTCCATG 59.298 50.000 0.00 0.00 0.00 3.66
31 32 2.971330 CTCCACTGATCTAAGCCTCCAT 59.029 50.000 0.00 0.00 0.00 3.41
33 34 1.069978 GCTCCACTGATCTAAGCCTCC 59.930 57.143 0.00 0.00 0.00 4.30
34 35 2.524569 GCTCCACTGATCTAAGCCTC 57.475 55.000 0.00 0.00 0.00 4.70
36 37 3.696306 GGCTCCACTGATCTAAGCC 57.304 57.895 8.08 8.08 45.11 4.35
37 38 2.492012 CATGGCTCCACTGATCTAAGC 58.508 52.381 0.00 0.00 0.00 3.09
38 39 2.702478 TCCATGGCTCCACTGATCTAAG 59.298 50.000 6.96 0.00 0.00 2.18
39 40 2.763039 TCCATGGCTCCACTGATCTAA 58.237 47.619 6.96 0.00 0.00 2.10
40 41 2.477104 TCCATGGCTCCACTGATCTA 57.523 50.000 6.96 0.00 0.00 1.98
41 42 1.489649 CTTCCATGGCTCCACTGATCT 59.510 52.381 6.96 0.00 0.00 2.75
42 43 1.487976 TCTTCCATGGCTCCACTGATC 59.512 52.381 6.96 0.00 0.00 2.92
44 45 1.588239 ATCTTCCATGGCTCCACTGA 58.412 50.000 6.96 0.00 0.00 3.41
45 46 2.022195 CAATCTTCCATGGCTCCACTG 58.978 52.381 6.96 0.00 0.00 3.66
46 47 1.064166 CCAATCTTCCATGGCTCCACT 60.064 52.381 6.96 0.00 0.00 4.00
47 48 1.341383 ACCAATCTTCCATGGCTCCAC 60.341 52.381 6.96 0.00 40.51 4.02
48 49 1.002069 ACCAATCTTCCATGGCTCCA 58.998 50.000 6.96 0.00 40.51 3.86
50 51 1.341383 ACCACCAATCTTCCATGGCTC 60.341 52.381 6.96 0.00 40.51 4.70
51 52 0.706433 ACCACCAATCTTCCATGGCT 59.294 50.000 6.96 0.00 40.51 4.75
52 53 0.819582 CACCACCAATCTTCCATGGC 59.180 55.000 6.96 0.00 40.51 4.40
53 54 1.272648 ACCACCACCAATCTTCCATGG 60.273 52.381 4.97 4.97 42.60 3.66
54 55 2.220653 ACCACCACCAATCTTCCATG 57.779 50.000 0.00 0.00 0.00 3.66
57 58 1.256812 CCAACCACCACCAATCTTCC 58.743 55.000 0.00 0.00 0.00 3.46
58 59 1.613437 CACCAACCACCACCAATCTTC 59.387 52.381 0.00 0.00 0.00 2.87
59 60 1.703411 CACCAACCACCACCAATCTT 58.297 50.000 0.00 0.00 0.00 2.40
60 61 0.178964 CCACCAACCACCACCAATCT 60.179 55.000 0.00 0.00 0.00 2.40
61 62 1.184970 CCCACCAACCACCACCAATC 61.185 60.000 0.00 0.00 0.00 2.67
62 63 1.152355 CCCACCAACCACCACCAAT 60.152 57.895 0.00 0.00 0.00 3.16
63 64 2.280416 CCCACCAACCACCACCAA 59.720 61.111 0.00 0.00 0.00 3.67
64 65 3.024356 ACCCACCAACCACCACCA 61.024 61.111 0.00 0.00 0.00 4.17
65 66 2.366153 ATCACCCACCAACCACCACC 62.366 60.000 0.00 0.00 0.00 4.61
66 67 1.152830 ATCACCCACCAACCACCAC 59.847 57.895 0.00 0.00 0.00 4.16
67 68 1.152599 CATCACCCACCAACCACCA 59.847 57.895 0.00 0.00 0.00 4.17
68 69 1.606313 CCATCACCCACCAACCACC 60.606 63.158 0.00 0.00 0.00 4.61
69 70 1.606313 CCCATCACCCACCAACCAC 60.606 63.158 0.00 0.00 0.00 4.16
70 71 2.850290 CCCATCACCCACCAACCA 59.150 61.111 0.00 0.00 0.00 3.67
71 72 2.037208 CCCCATCACCCACCAACC 59.963 66.667 0.00 0.00 0.00 3.77
72 73 2.037208 CCCCCATCACCCACCAAC 59.963 66.667 0.00 0.00 0.00 3.77
86 87 1.595058 TTCTCTCCTCCCTCTCCCCC 61.595 65.000 0.00 0.00 0.00 5.40
87 88 0.105709 CTTCTCTCCTCCCTCTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
88 89 0.105709 CCTTCTCTCCTCCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
89 90 0.105709 CCCTTCTCTCCTCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
90 91 0.105709 CCCCTTCTCTCCTCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
91 92 0.556380 TCCCCTTCTCTCCTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
92 93 0.105709 CTCCCCTTCTCTCCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
93 94 0.556380 TCTCCCCTTCTCTCCTCCCT 60.556 60.000 0.00 0.00 0.00 4.20
94 95 0.105709 CTCTCCCCTTCTCTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
95 96 0.105709 CCTCTCCCCTTCTCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
96 97 0.930726 TCCTCTCCCCTTCTCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
97 98 0.933700 CTCCTCTCCCCTTCTCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
98 99 0.759060 GCTCCTCTCCCCTTCTCTCC 60.759 65.000 0.00 0.00 0.00 3.71
99 100 0.759060 GGCTCCTCTCCCCTTCTCTC 60.759 65.000 0.00 0.00 0.00 3.20
100 101 1.313129 GGCTCCTCTCCCCTTCTCT 59.687 63.158 0.00 0.00 0.00 3.10
101 102 0.399806 ATGGCTCCTCTCCCCTTCTC 60.400 60.000 0.00 0.00 0.00 2.87
102 103 0.399806 GATGGCTCCTCTCCCCTTCT 60.400 60.000 0.00 0.00 0.00 2.85
103 104 0.692419 TGATGGCTCCTCTCCCCTTC 60.692 60.000 0.00 0.00 0.00 3.46
104 105 0.029267 ATGATGGCTCCTCTCCCCTT 60.029 55.000 0.00 0.00 0.00 3.95
105 106 0.029267 AATGATGGCTCCTCTCCCCT 60.029 55.000 0.00 0.00 0.00 4.79
106 107 0.399833 GAATGATGGCTCCTCTCCCC 59.600 60.000 0.00 0.00 0.00 4.81
107 108 0.399833 GGAATGATGGCTCCTCTCCC 59.600 60.000 0.00 0.00 0.00 4.30
108 109 1.433121 AGGAATGATGGCTCCTCTCC 58.567 55.000 0.00 0.00 37.53 3.71
109 110 2.437281 TCAAGGAATGATGGCTCCTCTC 59.563 50.000 0.00 0.00 41.40 3.20
110 111 2.485659 TCAAGGAATGATGGCTCCTCT 58.514 47.619 0.00 0.00 41.40 3.69
120 121 0.824109 AGCCGACGATCAAGGAATGA 59.176 50.000 0.00 0.00 43.67 2.57
121 122 1.212616 GAGCCGACGATCAAGGAATG 58.787 55.000 0.00 0.00 0.00 2.67
122 123 0.249073 CGAGCCGACGATCAAGGAAT 60.249 55.000 0.00 0.00 35.09 3.01
123 124 1.138883 CGAGCCGACGATCAAGGAA 59.861 57.895 0.00 0.00 35.09 3.36
124 125 2.798689 CGAGCCGACGATCAAGGA 59.201 61.111 0.00 0.00 35.09 3.36
125 126 2.890847 AAGCGAGCCGACGATCAAGG 62.891 60.000 0.00 0.00 35.09 3.61
126 127 1.475441 GAAGCGAGCCGACGATCAAG 61.475 60.000 0.00 0.00 35.09 3.02
127 128 1.516386 GAAGCGAGCCGACGATCAA 60.516 57.895 0.00 0.00 35.09 2.57
128 129 2.102357 GAAGCGAGCCGACGATCA 59.898 61.111 0.00 0.00 35.09 2.92
129 130 1.941734 CTGAAGCGAGCCGACGATC 60.942 63.158 0.00 0.00 35.09 3.69
130 131 2.103143 CTGAAGCGAGCCGACGAT 59.897 61.111 0.00 0.00 35.09 3.73
133 134 1.222115 AAACACTGAAGCGAGCCGAC 61.222 55.000 0.00 0.00 0.00 4.79
158 159 3.312973 GGTCTGTAGATCACCTAGTGACG 59.687 52.174 0.00 0.00 45.65 4.35
163 164 6.539173 ACATCTAGGTCTGTAGATCACCTAG 58.461 44.000 21.98 21.98 46.88 3.02
206 207 7.213678 TCGATTATCATGGTGTACAAATAGCA 58.786 34.615 0.00 0.00 0.00 3.49
207 208 7.652300 TCGATTATCATGGTGTACAAATAGC 57.348 36.000 0.00 0.00 0.00 2.97
208 209 9.423061 TCATCGATTATCATGGTGTACAAATAG 57.577 33.333 0.00 0.00 0.00 1.73
209 210 9.771534 TTCATCGATTATCATGGTGTACAAATA 57.228 29.630 0.00 0.00 0.00 1.40
210 211 8.675705 TTCATCGATTATCATGGTGTACAAAT 57.324 30.769 0.00 0.00 0.00 2.32
211 212 8.675705 ATTCATCGATTATCATGGTGTACAAA 57.324 30.769 0.00 0.00 0.00 2.83
212 213 9.771534 TTATTCATCGATTATCATGGTGTACAA 57.228 29.630 0.00 0.00 0.00 2.41
299 300 3.885297 CGGCCCATTTCTATCACTCATTT 59.115 43.478 0.00 0.00 0.00 2.32
302 303 2.115427 TCGGCCCATTTCTATCACTCA 58.885 47.619 0.00 0.00 0.00 3.41
306 307 2.038952 CTCCATCGGCCCATTTCTATCA 59.961 50.000 0.00 0.00 0.00 2.15
307 308 2.039084 ACTCCATCGGCCCATTTCTATC 59.961 50.000 0.00 0.00 0.00 2.08
319 320 2.029828 GTGCCATAGAGTACTCCATCGG 60.030 54.545 19.38 15.02 0.00 4.18
320 321 2.623416 TGTGCCATAGAGTACTCCATCG 59.377 50.000 19.38 5.41 0.00 3.84
322 323 2.362397 CGTGTGCCATAGAGTACTCCAT 59.638 50.000 19.38 8.73 0.00 3.41
324 325 2.022195 TCGTGTGCCATAGAGTACTCC 58.978 52.381 19.38 4.25 0.00 3.85
335 336 1.134037 ACCTAAGGTTTTCGTGTGCCA 60.134 47.619 0.00 0.00 27.29 4.92
373 374 1.208293 CCTACCTCTCACCTTTGCCTC 59.792 57.143 0.00 0.00 0.00 4.70
427 428 1.485895 AGCTCTTCCTTCCATCTGAGC 59.514 52.381 0.00 0.00 44.85 4.26
430 431 2.765135 TCTGAGCTCTTCCTTCCATCTG 59.235 50.000 16.19 0.00 0.00 2.90
431 432 3.113191 TCTGAGCTCTTCCTTCCATCT 57.887 47.619 16.19 0.00 0.00 2.90
433 434 3.586618 AGTTTCTGAGCTCTTCCTTCCAT 59.413 43.478 16.19 0.00 0.00 3.41
434 435 2.975489 AGTTTCTGAGCTCTTCCTTCCA 59.025 45.455 16.19 0.00 0.00 3.53
444 445 4.461081 ACATCTTCTACGAGTTTCTGAGCT 59.539 41.667 0.00 0.00 0.00 4.09
503 505 1.136147 GAAGCGAGCCGAAGACGTA 59.864 57.895 0.00 0.00 37.88 3.57
513 515 2.135933 ACTACAAACACTGAAGCGAGC 58.864 47.619 0.00 0.00 0.00 5.03
535 537 3.688235 AGTCTGTAGACCACCTAGTGAC 58.312 50.000 8.34 0.00 45.85 3.67
537 539 5.498393 TCTAAGTCTGTAGACCACCTAGTG 58.502 45.833 8.34 0.00 45.85 2.74
582 584 9.737844 TCAATTATCATGGCAGTATAAATAGCA 57.262 29.630 7.99 0.00 0.00 3.49
619 621 9.701098 CATGGCAGTATAAATAGCATCAAAAAT 57.299 29.630 0.00 0.00 0.00 1.82
620 622 8.911965 TCATGGCAGTATAAATAGCATCAAAAA 58.088 29.630 0.00 0.00 0.00 1.94
621 623 8.462589 TCATGGCAGTATAAATAGCATCAAAA 57.537 30.769 0.00 0.00 0.00 2.44
622 624 8.640063 ATCATGGCAGTATAAATAGCATCAAA 57.360 30.769 0.00 0.00 0.00 2.69
623 625 9.737844 TTATCATGGCAGTATAAATAGCATCAA 57.262 29.630 0.00 0.00 0.00 2.57
624 626 9.910267 ATTATCATGGCAGTATAAATAGCATCA 57.090 29.630 7.99 0.00 0.00 3.07
704 706 3.242316 GCTATTTTTACTGAAGGCCGTCG 60.242 47.826 14.24 10.99 0.00 5.12
708 710 5.641709 GTCAAGCTATTTTTACTGAAGGCC 58.358 41.667 0.00 0.00 0.00 5.19
727 729 2.096819 GCCCATTTTTATCGCTCGTCAA 59.903 45.455 0.00 0.00 0.00 3.18
735 737 3.885297 ACTCCATCAGCCCATTTTTATCG 59.115 43.478 0.00 0.00 0.00 2.92
751 753 1.749634 GTGTGCCGTAGAGTACTCCAT 59.250 52.381 19.38 4.54 0.00 3.41
753 755 0.455005 GGTGTGCCGTAGAGTACTCC 59.545 60.000 19.38 4.19 0.00 3.85
766 768 3.965780 CCTGAAGGTTTTGGTGTGC 57.034 52.632 0.00 0.00 0.00 4.57
813 819 5.328691 GTCTGAGCCGAGAGAATTATATCG 58.671 45.833 10.01 10.01 35.02 2.92
823 829 1.450491 TCGAGGTCTGAGCCGAGAG 60.450 63.158 13.65 0.00 0.00 3.20
854 860 3.299524 TACACCGTACGGGGCAAGC 62.300 63.158 35.88 0.00 44.03 4.01
856 862 1.470996 AACTACACCGTACGGGGCAA 61.471 55.000 35.88 22.93 44.03 4.52
857 863 0.610509 TAACTACACCGTACGGGGCA 60.611 55.000 35.88 23.60 44.03 5.36
858 864 0.101219 CTAACTACACCGTACGGGGC 59.899 60.000 35.88 0.00 44.03 5.80
859 865 1.401905 GACTAACTACACCGTACGGGG 59.598 57.143 34.47 34.47 46.10 5.73
860 866 1.401905 GGACTAACTACACCGTACGGG 59.598 57.143 35.86 26.14 43.62 5.28
862 868 4.361451 AATGGACTAACTACACCGTACG 57.639 45.455 8.69 8.69 0.00 3.67
864 870 6.183360 GCTTCTAATGGACTAACTACACCGTA 60.183 42.308 0.00 0.00 0.00 4.02
866 872 5.041940 GCTTCTAATGGACTAACTACACCG 58.958 45.833 0.00 0.00 0.00 4.94
868 874 5.105064 TGGGCTTCTAATGGACTAACTACAC 60.105 44.000 0.00 0.00 0.00 2.90
869 875 5.027460 TGGGCTTCTAATGGACTAACTACA 58.973 41.667 0.00 0.00 0.00 2.74
871 877 5.278061 ACTGGGCTTCTAATGGACTAACTA 58.722 41.667 0.00 0.00 0.00 2.24
872 878 4.104831 ACTGGGCTTCTAATGGACTAACT 58.895 43.478 0.00 0.00 0.00 2.24
873 879 4.489306 ACTGGGCTTCTAATGGACTAAC 57.511 45.455 0.00 0.00 0.00 2.34
874 880 5.071788 CCATACTGGGCTTCTAATGGACTAA 59.928 44.000 0.00 0.00 36.76 2.24
876 882 3.392616 CCATACTGGGCTTCTAATGGACT 59.607 47.826 0.00 0.00 36.76 3.85
877 883 3.744660 CCATACTGGGCTTCTAATGGAC 58.255 50.000 0.00 0.00 36.76 4.02
969 982 2.706890 GTTTGGAGGGTTTCAGCGATA 58.293 47.619 0.00 0.00 0.00 2.92
1164 1177 1.524961 CGGGGGTATAAGCTGCACA 59.475 57.895 1.02 0.00 0.00 4.57
1185 1198 1.651240 CGTCGGCGGAGAGGTAGAAA 61.651 60.000 7.21 0.00 0.00 2.52
1434 1447 3.160585 CCACCCTCTGAGGTTGCA 58.839 61.111 21.70 0.00 38.39 4.08
1539 1555 2.615912 GTCTTCAGAAACAACTGCTGCT 59.384 45.455 0.00 0.00 37.75 4.24
1599 1615 2.875786 GAGCTCTGTAATGCGGCGC 61.876 63.158 27.44 27.44 34.56 6.53
1656 1672 1.559718 ACCCTTCTCCTTCTGGGGT 59.440 57.895 0.00 0.00 44.66 4.95
1713 1729 0.949105 CACGCTTCCGCTTTGTACCT 60.949 55.000 0.00 0.00 38.22 3.08
1812 1828 4.099881 GGATCAACCAACACATTGCCATAT 59.900 41.667 0.00 0.00 38.79 1.78
1845 1861 0.629596 TCCTCTTCTTCCTCCGCCTA 59.370 55.000 0.00 0.00 0.00 3.93
1893 1909 1.153289 CTGCATCCGCTTAGCCTGT 60.153 57.895 0.00 0.00 39.64 4.00
2229 2245 7.174107 TCATCTTCAATGTAGATGTCACTCA 57.826 36.000 23.02 6.27 45.85 3.41
2301 2317 2.370349 CAGTACCAACACCAACACCAA 58.630 47.619 0.00 0.00 0.00 3.67
2340 2356 9.378551 CAAGCTATAATTAAGTGTGGTAGTCAA 57.621 33.333 0.00 0.00 0.00 3.18
2458 2474 3.088532 TGAAGCCACACACAGAAGTTTT 58.911 40.909 0.00 0.00 0.00 2.43
2465 2481 5.423015 AGATAACTATGAAGCCACACACAG 58.577 41.667 0.00 0.00 0.00 3.66
2466 2482 5.187772 AGAGATAACTATGAAGCCACACACA 59.812 40.000 0.00 0.00 0.00 3.72
2467 2483 5.665459 AGAGATAACTATGAAGCCACACAC 58.335 41.667 0.00 0.00 0.00 3.82
2471 2487 5.923684 GTGCTAGAGATAACTATGAAGCCAC 59.076 44.000 0.00 0.00 0.00 5.01
2482 2498 5.296283 TCGTTGGTCTAGTGCTAGAGATAAC 59.704 44.000 9.00 12.14 42.31 1.89
2528 2544 2.185004 AACATTTCCTCGGACTGTGG 57.815 50.000 0.00 0.00 0.00 4.17
2532 2548 4.576463 GCATCATTAACATTTCCTCGGACT 59.424 41.667 0.00 0.00 0.00 3.85
2651 2667 9.241919 TCAATTTACCAAGAATTCAGATAAGCA 57.758 29.630 8.44 0.00 0.00 3.91
2677 2701 2.827921 GAGAAGTGGGCATTGTGGATTT 59.172 45.455 0.00 0.00 0.00 2.17
2708 2732 6.093404 AGAATATTGACATGTAGCGTATCCG 58.907 40.000 0.00 0.00 37.07 4.18
2913 2939 3.009143 GGAACAAGTACCTCACCCTTGAT 59.991 47.826 5.69 0.00 39.07 2.57
3003 3029 5.474532 ACAGAAATGTGCACATACAAGACAT 59.525 36.000 31.55 11.57 35.10 3.06
3044 3070 2.473530 TTTTGCACTTTGTCGAGCAG 57.526 45.000 0.00 0.00 38.35 4.24
3133 3159 3.859411 AACTTGTCGCCAAACAGAAAA 57.141 38.095 0.00 0.00 0.00 2.29
3142 3168 2.839486 ATCTCTCAAACTTGTCGCCA 57.161 45.000 0.00 0.00 0.00 5.69
3185 3211 5.558818 GCATCTACATTCCATCAATCCTCT 58.441 41.667 0.00 0.00 0.00 3.69
3218 3244 2.490217 AGAACCTCGACGGATGCG 59.510 61.111 4.58 4.58 36.31 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.