Multiple sequence alignment - TraesCS6D01G214100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G214100 chr6D 100.000 4922 0 0 1 4922 304298573 304293652 0.000000e+00 9090.0
1 TraesCS6D01G214100 chr6D 84.539 401 46 9 4023 4415 122523306 122522914 2.780000e-102 383.0
2 TraesCS6D01G214100 chr6D 83.178 214 23 6 4125 4328 60551024 60551234 3.030000e-42 183.0
3 TraesCS6D01G214100 chr6D 79.389 131 23 3 662 789 372925524 372925395 6.790000e-14 89.8
4 TraesCS6D01G214100 chr6A 95.218 2844 86 24 1114 3925 410866033 410868858 0.000000e+00 4453.0
5 TraesCS6D01G214100 chr6A 90.385 312 25 2 814 1120 410850853 410851164 5.930000e-109 405.0
6 TraesCS6D01G214100 chr3D 93.694 666 33 7 1 661 169916796 169917457 0.000000e+00 989.0
7 TraesCS6D01G214100 chr3D 93.788 660 38 3 1 658 204709419 204708761 0.000000e+00 989.0
8 TraesCS6D01G214100 chr3D 93.072 664 39 7 1 659 542537325 542537986 0.000000e+00 965.0
9 TraesCS6D01G214100 chr3D 85.714 308 33 10 4615 4917 8725465 8725164 1.030000e-81 315.0
10 TraesCS6D01G214100 chr3D 79.321 324 45 13 4023 4327 56232090 56232410 1.800000e-49 207.0
11 TraesCS6D01G214100 chr3D 77.586 290 50 9 662 943 414657018 414656736 1.420000e-35 161.0
12 TraesCS6D01G214100 chr1D 93.505 662 36 7 1 658 252343299 252343957 0.000000e+00 977.0
13 TraesCS6D01G214100 chr1D 93.083 665 39 7 1 661 221451494 221452155 0.000000e+00 966.0
14 TraesCS6D01G214100 chr1D 92.943 666 41 6 1 661 317352605 317351941 0.000000e+00 965.0
15 TraesCS6D01G214100 chr1D 92.932 665 41 6 1 661 189594130 189594792 0.000000e+00 963.0
16 TraesCS6D01G214100 chr1D 77.947 263 44 12 4078 4328 46459949 46460209 8.530000e-33 152.0
17 TraesCS6D01G214100 chr5D 93.363 663 39 5 1 659 214352167 214352828 0.000000e+00 976.0
18 TraesCS6D01G214100 chr5D 86.093 151 20 1 679 828 369554050 369554200 1.420000e-35 161.0
19 TraesCS6D01G214100 chr5D 80.303 132 23 1 662 790 44165732 44165863 4.060000e-16 97.1
20 TraesCS6D01G214100 chr5A 93.202 662 38 7 1 658 347017940 347017282 0.000000e+00 966.0
21 TraesCS6D01G214100 chr5A 84.672 137 20 1 660 796 572847776 572847641 8.590000e-28 135.0
22 TraesCS6D01G214100 chr5A 81.343 134 22 1 660 790 34325369 34325502 6.740000e-19 106.0
23 TraesCS6D01G214100 chr5A 89.412 85 4 2 1983 2067 500030740 500030661 8.720000e-18 102.0
24 TraesCS6D01G214100 chr6B 96.127 568 15 5 1075 1640 470631900 470631338 0.000000e+00 920.0
25 TraesCS6D01G214100 chr6B 98.221 281 4 1 1643 1923 470630510 470630231 1.590000e-134 490.0
26 TraesCS6D01G214100 chr6B 89.264 326 34 1 659 983 470632238 470631913 1.650000e-109 407.0
27 TraesCS6D01G214100 chr2A 81.494 924 163 8 2747 3666 619625268 619624349 0.000000e+00 752.0
28 TraesCS6D01G214100 chr2A 81.842 749 93 24 4132 4850 196502341 196503076 1.530000e-164 590.0
29 TraesCS6D01G214100 chr2A 77.895 760 148 17 2885 3634 758882655 758883404 5.810000e-124 455.0
30 TraesCS6D01G214100 chr2A 82.231 484 58 16 4440 4918 719568592 719568132 4.620000e-105 392.0
31 TraesCS6D01G214100 chr2A 84.946 279 38 4 1411 1687 619628275 619627999 3.750000e-71 279.0
32 TraesCS6D01G214100 chr2A 85.145 276 38 3 1412 1685 619755114 619755388 3.750000e-71 279.0
33 TraesCS6D01G214100 chr2A 84.698 281 30 11 1412 1685 619765259 619765533 8.120000e-68 268.0
34 TraesCS6D01G214100 chr2A 78.947 152 26 5 798 943 554522473 554522624 1.130000e-16 99.0
35 TraesCS6D01G214100 chr2B 81.277 924 165 8 2747 3666 559189674 559188755 0.000000e+00 741.0
36 TraesCS6D01G214100 chr2B 77.822 762 152 16 2885 3638 772116676 772115924 5.810000e-124 455.0
37 TraesCS6D01G214100 chr2B 82.377 488 44 22 4440 4920 706695840 706695388 2.150000e-103 387.0
38 TraesCS6D01G214100 chr2B 86.022 279 36 3 1411 1687 559193213 559192936 3.730000e-76 296.0
39 TraesCS6D01G214100 chr2B 84.420 276 40 3 1412 1685 559306371 559306645 8.120000e-68 268.0
40 TraesCS6D01G214100 chr2D 80.715 923 172 6 2747 3666 477261334 477260415 0.000000e+00 713.0
41 TraesCS6D01G214100 chr2D 77.165 762 157 15 2885 3638 629079476 629080228 1.270000e-115 427.0
42 TraesCS6D01G214100 chr2D 86.335 322 34 6 4440 4757 585625189 585624874 4.720000e-90 342.0
43 TraesCS6D01G214100 chr2D 84.588 279 40 3 1411 1687 477264723 477264446 1.750000e-69 274.0
44 TraesCS6D01G214100 chr2D 84.058 276 41 3 1412 1685 477270177 477270451 3.780000e-66 263.0
45 TraesCS6D01G214100 chr2D 75.000 208 40 12 4111 4311 55233877 55234079 8.780000e-13 86.1
46 TraesCS6D01G214100 chr3B 85.270 482 51 10 4444 4922 582996956 582996492 3.450000e-131 479.0
47 TraesCS6D01G214100 chr3B 84.937 478 51 11 4444 4917 583091348 583090888 9.650000e-127 464.0
48 TraesCS6D01G214100 chr3B 79.560 318 48 12 4023 4327 85329333 85329646 1.390000e-50 211.0
49 TraesCS6D01G214100 chr3B 81.910 199 27 5 689 882 540499131 540498937 5.100000e-35 159.0
50 TraesCS6D01G214100 chr7D 85.263 475 55 6 4444 4917 540843720 540844180 4.460000e-130 475.0
51 TraesCS6D01G214100 chr7D 86.728 324 25 14 4594 4913 540844287 540844596 1.310000e-90 344.0
52 TraesCS6D01G214100 chr7D 86.000 200 23 5 4217 4415 540843448 540843643 4.990000e-50 209.0
53 TraesCS6D01G214100 chr7D 77.670 309 48 15 663 951 39218124 39217817 8.470000e-38 169.0
54 TraesCS6D01G214100 chr7A 87.023 393 44 6 4444 4833 37851261 37851649 2.100000e-118 436.0
55 TraesCS6D01G214100 chr7A 85.961 406 45 7 4019 4415 37850780 37851182 1.640000e-114 424.0
56 TraesCS6D01G214100 chr7A 90.588 85 3 1 1983 2067 35742574 35742653 1.870000e-19 108.0
57 TraesCS6D01G214100 chr7A 89.412 85 4 1 1983 2067 17964918 17964839 8.720000e-18 102.0
58 TraesCS6D01G214100 chr7A 82.353 119 18 2 678 793 553223503 553223621 3.130000e-17 100.0
59 TraesCS6D01G214100 chr7A 78.912 147 23 8 4480 4620 558087257 558087113 5.250000e-15 93.5
60 TraesCS6D01G214100 chr1B 89.510 286 26 4 4625 4908 100638799 100638516 4.680000e-95 359.0
61 TraesCS6D01G214100 chr1B 89.286 56 6 0 896 951 401761057 401761112 2.460000e-08 71.3
62 TraesCS6D01G214100 chr4B 84.076 314 36 10 4615 4920 664090966 664091273 1.730000e-74 291.0
63 TraesCS6D01G214100 chr1A 77.703 296 42 18 4023 4303 481657617 481657331 5.100000e-35 159.0
64 TraesCS6D01G214100 chr1A 88.235 85 5 1 1983 2067 526136242 526136163 4.060000e-16 97.1
65 TraesCS6D01G214100 chr1A 97.059 34 0 1 4416 4448 468655451 468655418 6.880000e-04 56.5
66 TraesCS6D01G214100 chr1A 97.059 34 0 1 4416 4448 468655921 468655888 6.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G214100 chr6D 304293652 304298573 4921 True 9090.000000 9090 100.000000 1 4922 1 chr6D.!!$R2 4921
1 TraesCS6D01G214100 chr6A 410866033 410868858 2825 False 4453.000000 4453 95.218000 1114 3925 1 chr6A.!!$F2 2811
2 TraesCS6D01G214100 chr3D 169916796 169917457 661 False 989.000000 989 93.694000 1 661 1 chr3D.!!$F2 660
3 TraesCS6D01G214100 chr3D 204708761 204709419 658 True 989.000000 989 93.788000 1 658 1 chr3D.!!$R2 657
4 TraesCS6D01G214100 chr3D 542537325 542537986 661 False 965.000000 965 93.072000 1 659 1 chr3D.!!$F3 658
5 TraesCS6D01G214100 chr1D 252343299 252343957 658 False 977.000000 977 93.505000 1 658 1 chr1D.!!$F4 657
6 TraesCS6D01G214100 chr1D 221451494 221452155 661 False 966.000000 966 93.083000 1 661 1 chr1D.!!$F3 660
7 TraesCS6D01G214100 chr1D 317351941 317352605 664 True 965.000000 965 92.943000 1 661 1 chr1D.!!$R1 660
8 TraesCS6D01G214100 chr1D 189594130 189594792 662 False 963.000000 963 92.932000 1 661 1 chr1D.!!$F2 660
9 TraesCS6D01G214100 chr5D 214352167 214352828 661 False 976.000000 976 93.363000 1 659 1 chr5D.!!$F2 658
10 TraesCS6D01G214100 chr5A 347017282 347017940 658 True 966.000000 966 93.202000 1 658 1 chr5A.!!$R1 657
11 TraesCS6D01G214100 chr6B 470630231 470632238 2007 True 605.666667 920 94.537333 659 1923 3 chr6B.!!$R1 1264
12 TraesCS6D01G214100 chr2A 196502341 196503076 735 False 590.000000 590 81.842000 4132 4850 1 chr2A.!!$F1 718
13 TraesCS6D01G214100 chr2A 619624349 619628275 3926 True 515.500000 752 83.220000 1411 3666 2 chr2A.!!$R2 2255
14 TraesCS6D01G214100 chr2A 758882655 758883404 749 False 455.000000 455 77.895000 2885 3634 1 chr2A.!!$F5 749
15 TraesCS6D01G214100 chr2B 559188755 559193213 4458 True 518.500000 741 83.649500 1411 3666 2 chr2B.!!$R3 2255
16 TraesCS6D01G214100 chr2B 772115924 772116676 752 True 455.000000 455 77.822000 2885 3638 1 chr2B.!!$R2 753
17 TraesCS6D01G214100 chr2D 477260415 477264723 4308 True 493.500000 713 82.651500 1411 3666 2 chr2D.!!$R2 2255
18 TraesCS6D01G214100 chr2D 629079476 629080228 752 False 427.000000 427 77.165000 2885 3638 1 chr2D.!!$F3 753
19 TraesCS6D01G214100 chr7D 540843448 540844596 1148 False 342.666667 475 85.997000 4217 4917 3 chr7D.!!$F1 700
20 TraesCS6D01G214100 chr7A 37850780 37851649 869 False 430.000000 436 86.492000 4019 4833 2 chr7A.!!$F3 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 999 0.034186 GGACATGGTTGGATGGCTGA 60.034 55.0 0.00 0.00 31.31 4.26 F
1019 1029 0.182775 ACTGTTCACTGGTTGGTCCC 59.817 55.0 0.00 0.00 34.77 4.46 F
1038 1048 0.324943 CCACTGGTCCTTGGACGATT 59.675 55.0 12.97 1.66 34.46 3.34 F
2291 5397 0.970937 TCTTGGCAGGTACTCCCTCG 60.971 60.0 0.00 0.00 43.86 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2729 6379 1.006825 CGCAAGTCATCGTCGTCCAA 61.007 55.000 0.00 0.0 0.00 3.53 R
3100 6756 1.515954 CGACGCCAGGGTCAAGTAT 59.484 57.895 14.29 0.0 36.73 2.12 R
3304 6960 2.113986 GTGAGGCAGTGCTTGGGT 59.886 61.111 16.11 0.0 0.00 4.51 R
4108 7779 0.321653 CTTCGGCCCAGTAGCAAACT 60.322 55.000 0.00 0.0 39.81 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.269998 GCTACTAGCTATGGACCCGTG 59.730 57.143 0.35 0.00 38.45 4.94
129 130 1.337823 CCGTGGGTCTGAGGTAAACTG 60.338 57.143 0.00 0.00 0.00 3.16
144 145 0.038251 AACTGCTCACGCTTCATCGA 60.038 50.000 0.00 0.00 36.97 3.59
146 147 1.284657 CTGCTCACGCTTCATCGAAT 58.715 50.000 0.00 0.00 36.97 3.34
152 153 1.353103 CGCTTCATCGAATGGGCAC 59.647 57.895 0.00 0.00 32.64 5.01
251 253 1.959226 GAACAGAAGGTTGCGGCGA 60.959 57.895 12.98 0.00 40.63 5.54
330 332 1.381872 GCAGAGCTAGGTCAGGGGA 60.382 63.158 23.18 0.00 0.00 4.81
331 333 1.398958 GCAGAGCTAGGTCAGGGGAG 61.399 65.000 23.18 7.29 0.00 4.30
430 433 1.194781 TCTCCTGGGTGTCTTCTGGC 61.195 60.000 0.00 0.00 0.00 4.85
659 668 3.570550 AGATACCTTGGAGACGTATCAGC 59.429 47.826 12.92 0.00 40.44 4.26
660 669 1.557099 ACCTTGGAGACGTATCAGCA 58.443 50.000 12.92 0.00 0.00 4.41
661 670 1.478510 ACCTTGGAGACGTATCAGCAG 59.521 52.381 12.92 4.20 0.00 4.24
668 677 1.746220 AGACGTATCAGCAGACAGGTC 59.254 52.381 2.36 2.36 36.57 3.85
681 690 2.049433 AGGTCGCGGACTTTGACG 60.049 61.111 6.13 0.00 33.45 4.35
701 710 0.399233 AGGAGTAGTGGATGGGAGGC 60.399 60.000 0.00 0.00 0.00 4.70
724 733 2.266055 GGCCTCGAGTCCCAAGTG 59.734 66.667 12.31 0.00 0.00 3.16
751 760 1.065928 CGCGTCCCATGTCCTACTC 59.934 63.158 0.00 0.00 0.00 2.59
758 767 2.314852 TCCCATGTCCTACTCTTCCTCA 59.685 50.000 0.00 0.00 0.00 3.86
762 771 1.353358 TGTCCTACTCTTCCTCACCGA 59.647 52.381 0.00 0.00 0.00 4.69
763 772 1.744522 GTCCTACTCTTCCTCACCGAC 59.255 57.143 0.00 0.00 0.00 4.79
775 784 3.920196 ACCGACGACCGCACCTTT 61.920 61.111 0.00 0.00 36.84 3.11
776 785 3.411351 CCGACGACCGCACCTTTG 61.411 66.667 0.00 0.00 36.84 2.77
777 786 4.072088 CGACGACCGCACCTTTGC 62.072 66.667 0.00 0.00 46.21 3.68
809 818 2.765699 TCATCTTCATCGGACATGGACA 59.234 45.455 0.00 0.00 0.00 4.02
845 854 2.844348 GGGAATAAGGACTTGGAGGACA 59.156 50.000 0.00 0.00 0.00 4.02
846 855 3.459969 GGGAATAAGGACTTGGAGGACAT 59.540 47.826 0.00 0.00 0.00 3.06
848 857 4.164221 GGAATAAGGACTTGGAGGACATCA 59.836 45.833 0.00 0.00 0.00 3.07
853 862 1.625818 GACTTGGAGGACATCACCACT 59.374 52.381 0.00 0.00 33.20 4.00
854 863 2.832129 GACTTGGAGGACATCACCACTA 59.168 50.000 0.00 0.00 33.20 2.74
857 866 4.651503 ACTTGGAGGACATCACCACTATAG 59.348 45.833 0.00 0.00 33.20 1.31
883 893 2.308275 AGACTAGGTTAGGTCCAGTCGT 59.692 50.000 0.00 0.00 38.90 4.34
885 895 3.504375 ACTAGGTTAGGTCCAGTCGTTT 58.496 45.455 0.00 0.00 0.00 3.60
923 933 8.714179 CATGTCAAAAATGTAATGAATGTGCTT 58.286 29.630 0.00 0.00 0.00 3.91
924 934 8.296799 TGTCAAAAATGTAATGAATGTGCTTC 57.703 30.769 0.00 0.00 0.00 3.86
932 942 7.151999 TGTAATGAATGTGCTTCGGTTTAAT 57.848 32.000 0.00 0.00 36.60 1.40
984 994 9.664332 TTATTTTAAAATGGACATGGTTGGATG 57.336 29.630 21.19 0.00 0.00 3.51
985 995 5.674052 TTAAAATGGACATGGTTGGATGG 57.326 39.130 0.00 0.00 0.00 3.51
986 996 1.488390 AATGGACATGGTTGGATGGC 58.512 50.000 0.00 0.00 0.00 4.40
987 997 0.632835 ATGGACATGGTTGGATGGCT 59.367 50.000 0.00 0.00 31.31 4.75
988 998 0.323633 TGGACATGGTTGGATGGCTG 60.324 55.000 0.00 0.00 31.31 4.85
989 999 0.034186 GGACATGGTTGGATGGCTGA 60.034 55.000 0.00 0.00 31.31 4.26
990 1000 1.098050 GACATGGTTGGATGGCTGAC 58.902 55.000 0.00 0.00 0.00 3.51
991 1001 0.700564 ACATGGTTGGATGGCTGACT 59.299 50.000 0.00 0.00 0.00 3.41
992 1002 1.915489 ACATGGTTGGATGGCTGACTA 59.085 47.619 0.00 0.00 0.00 2.59
993 1003 2.292267 CATGGTTGGATGGCTGACTAC 58.708 52.381 0.00 0.00 0.00 2.73
994 1004 1.656587 TGGTTGGATGGCTGACTACT 58.343 50.000 0.00 0.00 0.00 2.57
995 1005 1.278985 TGGTTGGATGGCTGACTACTG 59.721 52.381 0.00 0.00 0.00 2.74
996 1006 1.373570 GTTGGATGGCTGACTACTGC 58.626 55.000 0.00 0.00 39.64 4.40
997 1007 0.983467 TTGGATGGCTGACTACTGCA 59.017 50.000 0.00 0.00 41.61 4.41
998 1008 1.206878 TGGATGGCTGACTACTGCAT 58.793 50.000 0.00 0.00 41.61 3.96
999 1009 1.139654 TGGATGGCTGACTACTGCATC 59.860 52.381 0.00 0.00 41.61 3.91
1000 1010 1.139654 GGATGGCTGACTACTGCATCA 59.860 52.381 0.00 0.00 41.61 3.07
1001 1011 2.208431 GATGGCTGACTACTGCATCAC 58.792 52.381 0.00 0.00 41.61 3.06
1002 1012 1.269958 TGGCTGACTACTGCATCACT 58.730 50.000 0.00 0.00 41.61 3.41
1003 1013 1.066645 TGGCTGACTACTGCATCACTG 60.067 52.381 0.00 0.00 41.61 3.66
1004 1014 1.066573 GGCTGACTACTGCATCACTGT 60.067 52.381 0.00 0.00 41.61 3.55
1005 1015 2.613977 GGCTGACTACTGCATCACTGTT 60.614 50.000 0.00 0.00 41.61 3.16
1006 1016 2.670414 GCTGACTACTGCATCACTGTTC 59.330 50.000 0.00 0.00 40.01 3.18
1007 1017 3.862264 GCTGACTACTGCATCACTGTTCA 60.862 47.826 0.00 0.00 40.01 3.18
1008 1018 3.653344 TGACTACTGCATCACTGTTCAC 58.347 45.455 0.00 0.00 0.00 3.18
1009 1019 3.321968 TGACTACTGCATCACTGTTCACT 59.678 43.478 0.00 0.00 0.00 3.41
1010 1020 3.657634 ACTACTGCATCACTGTTCACTG 58.342 45.455 0.00 0.00 0.00 3.66
1011 1021 1.888215 ACTGCATCACTGTTCACTGG 58.112 50.000 0.00 0.00 0.00 4.00
1012 1022 1.141657 ACTGCATCACTGTTCACTGGT 59.858 47.619 0.00 0.00 0.00 4.00
1013 1023 2.224606 CTGCATCACTGTTCACTGGTT 58.775 47.619 0.00 0.00 0.00 3.67
1014 1024 1.948834 TGCATCACTGTTCACTGGTTG 59.051 47.619 0.00 0.00 0.00 3.77
1015 1025 1.267806 GCATCACTGTTCACTGGTTGG 59.732 52.381 0.00 0.00 0.00 3.77
1016 1026 2.575532 CATCACTGTTCACTGGTTGGT 58.424 47.619 0.00 0.00 0.00 3.67
1017 1027 2.325583 TCACTGTTCACTGGTTGGTC 57.674 50.000 0.00 0.00 0.00 4.02
1018 1028 1.134220 TCACTGTTCACTGGTTGGTCC 60.134 52.381 0.00 0.00 0.00 4.46
1019 1029 0.182775 ACTGTTCACTGGTTGGTCCC 59.817 55.000 0.00 0.00 34.77 4.46
1020 1030 0.537371 CTGTTCACTGGTTGGTCCCC 60.537 60.000 0.00 0.00 34.77 4.81
1021 1031 1.282653 TGTTCACTGGTTGGTCCCCA 61.283 55.000 0.00 0.00 34.77 4.96
1022 1032 0.822121 GTTCACTGGTTGGTCCCCAC 60.822 60.000 0.00 0.00 30.78 4.61
1023 1033 0.991355 TTCACTGGTTGGTCCCCACT 60.991 55.000 0.00 0.00 30.78 4.00
1024 1034 1.228245 CACTGGTTGGTCCCCACTG 60.228 63.158 0.00 0.00 30.78 3.66
1025 1035 2.436109 CTGGTTGGTCCCCACTGG 59.564 66.667 0.00 0.00 30.78 4.00
1026 1036 2.369015 TGGTTGGTCCCCACTGGT 60.369 61.111 0.00 0.00 30.78 4.00
1027 1037 2.411765 CTGGTTGGTCCCCACTGGTC 62.412 65.000 0.00 0.00 30.78 4.02
1028 1038 2.434774 GTTGGTCCCCACTGGTCC 59.565 66.667 0.00 0.00 42.22 4.46
1029 1039 2.154074 GTTGGTCCCCACTGGTCCT 61.154 63.158 0.00 0.00 42.35 3.85
1030 1040 1.386772 TTGGTCCCCACTGGTCCTT 60.387 57.895 0.00 0.00 42.35 3.36
1031 1041 1.715019 TTGGTCCCCACTGGTCCTTG 61.715 60.000 0.00 0.00 42.35 3.61
1032 1042 2.757077 GTCCCCACTGGTCCTTGG 59.243 66.667 3.61 3.61 34.77 3.61
1033 1043 1.846124 GTCCCCACTGGTCCTTGGA 60.846 63.158 10.84 0.00 34.46 3.53
1034 1044 1.846124 TCCCCACTGGTCCTTGGAC 60.846 63.158 11.13 11.13 34.46 4.02
1035 1045 2.347490 CCCACTGGTCCTTGGACG 59.653 66.667 12.97 3.83 34.46 4.79
1036 1046 2.214216 CCCACTGGTCCTTGGACGA 61.214 63.158 12.97 8.80 34.46 4.20
1037 1047 1.553690 CCCACTGGTCCTTGGACGAT 61.554 60.000 12.97 0.00 34.46 3.73
1038 1048 0.324943 CCACTGGTCCTTGGACGATT 59.675 55.000 12.97 1.66 34.46 3.34
1039 1049 1.271379 CCACTGGTCCTTGGACGATTT 60.271 52.381 12.97 0.00 34.46 2.17
1040 1050 1.806542 CACTGGTCCTTGGACGATTTG 59.193 52.381 12.97 6.48 0.00 2.32
1041 1051 1.271379 ACTGGTCCTTGGACGATTTGG 60.271 52.381 12.97 1.36 0.00 3.28
1042 1052 1.003118 CTGGTCCTTGGACGATTTGGA 59.997 52.381 12.97 0.00 0.00 3.53
1043 1053 1.003118 TGGTCCTTGGACGATTTGGAG 59.997 52.381 12.97 0.00 0.00 3.86
1044 1054 1.003233 GGTCCTTGGACGATTTGGAGT 59.997 52.381 12.97 0.00 0.00 3.85
1045 1055 2.552373 GGTCCTTGGACGATTTGGAGTT 60.552 50.000 12.97 0.00 0.00 3.01
1046 1056 3.307199 GGTCCTTGGACGATTTGGAGTTA 60.307 47.826 12.97 0.00 0.00 2.24
1047 1057 4.320870 GTCCTTGGACGATTTGGAGTTAA 58.679 43.478 3.87 0.00 0.00 2.01
1048 1058 4.941873 GTCCTTGGACGATTTGGAGTTAAT 59.058 41.667 3.87 0.00 0.00 1.40
1049 1059 4.941263 TCCTTGGACGATTTGGAGTTAATG 59.059 41.667 0.00 0.00 0.00 1.90
1050 1060 4.700213 CCTTGGACGATTTGGAGTTAATGT 59.300 41.667 0.00 0.00 0.00 2.71
1051 1061 5.183140 CCTTGGACGATTTGGAGTTAATGTT 59.817 40.000 0.00 0.00 0.00 2.71
1052 1062 5.621197 TGGACGATTTGGAGTTAATGTTG 57.379 39.130 0.00 0.00 0.00 3.33
1053 1063 4.457603 TGGACGATTTGGAGTTAATGTTGG 59.542 41.667 0.00 0.00 0.00 3.77
1054 1064 4.698304 GGACGATTTGGAGTTAATGTTGGA 59.302 41.667 0.00 0.00 0.00 3.53
1061 1071 2.614057 GGAGTTAATGTTGGAGATGCCG 59.386 50.000 0.00 0.00 40.66 5.69
1068 1078 1.206132 TGTTGGAGATGCCGTAATCGT 59.794 47.619 0.00 0.00 40.66 3.73
1069 1079 2.277084 GTTGGAGATGCCGTAATCGTT 58.723 47.619 0.00 0.00 40.66 3.85
1070 1080 3.119065 TGTTGGAGATGCCGTAATCGTTA 60.119 43.478 0.00 0.00 40.66 3.18
1071 1081 4.056050 GTTGGAGATGCCGTAATCGTTAT 58.944 43.478 0.00 0.00 40.66 1.89
1072 1082 5.221283 TGTTGGAGATGCCGTAATCGTTATA 60.221 40.000 0.00 0.00 40.66 0.98
1073 1083 5.654603 TGGAGATGCCGTAATCGTTATAT 57.345 39.130 0.00 0.00 40.66 0.86
1074 1084 5.407502 TGGAGATGCCGTAATCGTTATATG 58.592 41.667 0.00 0.00 40.66 1.78
1824 4749 1.227586 CATGAGCAGCAGGATCGCT 60.228 57.895 0.00 0.00 45.21 4.93
1929 4854 2.470362 CGTCGGCCTCTTCGCTCTA 61.470 63.158 0.00 0.00 0.00 2.43
1955 4880 4.527944 CCCCTGAGAAAGGTAAATCTTCC 58.472 47.826 0.00 0.00 45.78 3.46
1957 4882 4.192317 CCTGAGAAAGGTAAATCTTCCGG 58.808 47.826 0.00 0.00 41.74 5.14
1959 4884 2.943690 GAGAAAGGTAAATCTTCCGGCC 59.056 50.000 0.00 0.00 0.00 6.13
1962 4887 1.580059 AGGTAAATCTTCCGGCCAGA 58.420 50.000 2.24 0.00 0.00 3.86
1963 4888 1.913419 AGGTAAATCTTCCGGCCAGAA 59.087 47.619 2.24 1.26 0.00 3.02
1965 4890 2.617021 GGTAAATCTTCCGGCCAGAACA 60.617 50.000 2.24 0.00 0.00 3.18
1966 4891 2.286365 AAATCTTCCGGCCAGAACAA 57.714 45.000 2.24 0.00 0.00 2.83
1967 4892 2.286365 AATCTTCCGGCCAGAACAAA 57.714 45.000 2.24 0.00 0.00 2.83
1968 4893 2.514458 ATCTTCCGGCCAGAACAAAT 57.486 45.000 2.24 0.00 0.00 2.32
1969 4894 1.821216 TCTTCCGGCCAGAACAAATC 58.179 50.000 2.24 0.00 0.00 2.17
1992 5052 4.992688 TGATCCGTTAATTTGTGCCATTC 58.007 39.130 0.00 0.00 0.00 2.67
1993 5053 4.704540 TGATCCGTTAATTTGTGCCATTCT 59.295 37.500 0.00 0.00 0.00 2.40
1994 5054 4.695217 TCCGTTAATTTGTGCCATTCTC 57.305 40.909 0.00 0.00 0.00 2.87
1995 5055 3.442273 TCCGTTAATTTGTGCCATTCTCC 59.558 43.478 0.00 0.00 0.00 3.71
1996 5056 3.192422 CCGTTAATTTGTGCCATTCTCCA 59.808 43.478 0.00 0.00 0.00 3.86
1998 5058 5.410067 CGTTAATTTGTGCCATTCTCCATT 58.590 37.500 0.00 0.00 0.00 3.16
1999 5059 5.868801 CGTTAATTTGTGCCATTCTCCATTT 59.131 36.000 0.00 0.00 0.00 2.32
2001 5061 2.747396 TTGTGCCATTCTCCATTTGC 57.253 45.000 0.00 0.00 0.00 3.68
2006 5070 2.633967 TGCCATTCTCCATTTGCAAAGT 59.366 40.909 18.19 3.30 0.00 2.66
2132 5228 4.033776 CCTCAGGGCGCCAAGGAA 62.034 66.667 30.85 7.44 32.56 3.36
2161 5257 4.988065 GCAGTCAGTGCGACCTTA 57.012 55.556 0.00 0.00 46.69 2.69
2162 5258 3.210857 GCAGTCAGTGCGACCTTAA 57.789 52.632 0.00 0.00 46.69 1.85
2163 5259 1.726853 GCAGTCAGTGCGACCTTAAT 58.273 50.000 0.00 0.00 46.69 1.40
2164 5260 2.076863 GCAGTCAGTGCGACCTTAATT 58.923 47.619 0.00 0.00 46.69 1.40
2178 5274 6.523201 GCGACCTTAATTTGTTCTGTACATTG 59.477 38.462 0.00 0.00 36.44 2.82
2291 5397 0.970937 TCTTGGCAGGTACTCCCTCG 60.971 60.000 0.00 0.00 43.86 4.63
2503 5725 3.716195 TGGGGACTGATGTGGCCG 61.716 66.667 0.00 0.00 0.00 6.13
2587 6237 2.508526 CTGCAAGGCTACAAGGTCTTT 58.491 47.619 0.00 0.00 0.00 2.52
2617 6267 1.950484 GCCATGATTCTTGGTGACGGT 60.950 52.381 17.27 0.00 36.57 4.83
2655 6305 2.046023 CAGCCTGCGGATGACCAA 60.046 61.111 6.97 0.00 42.34 3.67
2689 6339 2.125350 GCCAAGAGGAGGAGCACG 60.125 66.667 0.00 0.00 36.89 5.34
3061 6717 1.290203 GCGTCATGATGACCATCGTT 58.710 50.000 19.30 0.00 44.20 3.85
3100 6756 1.118965 TGCAGGACTTCAAGACCGGA 61.119 55.000 9.46 0.00 35.19 5.14
3104 6760 2.761208 CAGGACTTCAAGACCGGATACT 59.239 50.000 9.46 0.87 35.19 2.12
3340 6996 2.480610 CCTGTGCTGCGTGGTGTTT 61.481 57.895 0.00 0.00 0.00 2.83
3394 7050 2.343758 GCGCCAGAGAAGGTGTCA 59.656 61.111 0.00 0.00 41.26 3.58
3403 7059 4.020218 CCAGAGAAGGTGTCAAGGTTCATA 60.020 45.833 0.00 0.00 0.00 2.15
3634 7290 2.159043 TCCGATCTGCATGAAGTTCCTC 60.159 50.000 0.00 0.00 0.00 3.71
3698 7354 3.181471 CCTCTCGTCCAAGACATAGCATT 60.181 47.826 0.00 0.00 32.09 3.56
3716 7376 4.949856 AGCATTCATTCTCGTTTACCCAAT 59.050 37.500 0.00 0.00 0.00 3.16
3737 7400 4.959596 TTAGTACTACTCAGCTTCGTGG 57.040 45.455 0.91 0.00 0.00 4.94
3760 7423 4.666176 GTCGTGCAACATTATATCGCTTTG 59.334 41.667 0.00 0.00 35.74 2.77
3782 7446 4.337836 TGTTGATTTAGTTTGTGCTGCTGA 59.662 37.500 0.00 0.00 0.00 4.26
3799 7463 3.982701 TGCTGATTTGTCTGCGATTTTTG 59.017 39.130 0.00 0.00 37.38 2.44
3801 7465 4.089065 GCTGATTTGTCTGCGATTTTTGAC 59.911 41.667 0.00 0.00 0.00 3.18
3802 7466 4.218265 TGATTTGTCTGCGATTTTTGACG 58.782 39.130 0.00 0.00 32.64 4.35
3834 7498 6.608405 TCATCTAAATGGCAAGATCCAATGTT 59.392 34.615 0.00 0.00 39.96 2.71
3841 7505 4.400251 TGGCAAGATCCAATGTTCTGAATC 59.600 41.667 0.00 0.00 32.18 2.52
3872 7536 3.239449 TGGTATGTCCAACTGACTGACT 58.761 45.455 0.00 0.00 44.12 3.41
3873 7537 3.006859 TGGTATGTCCAACTGACTGACTG 59.993 47.826 0.00 0.00 44.12 3.51
3875 7539 2.890808 TGTCCAACTGACTGACTGTC 57.109 50.000 0.00 0.00 44.75 3.51
3876 7540 1.412710 TGTCCAACTGACTGACTGTCC 59.587 52.381 5.17 0.00 44.75 4.02
3936 7603 9.893305 ACACAAAATAATTGACACTTTAGCTAC 57.107 29.630 0.00 0.00 0.00 3.58
3939 7606 9.478019 CAAAATAATTGACACTTTAGCTACTCG 57.522 33.333 0.00 0.00 0.00 4.18
3940 7607 8.773404 AAATAATTGACACTTTAGCTACTCGT 57.227 30.769 0.00 0.00 0.00 4.18
3941 7608 9.865321 AAATAATTGACACTTTAGCTACTCGTA 57.135 29.630 0.00 0.00 0.00 3.43
3942 7609 9.865321 AATAATTGACACTTTAGCTACTCGTAA 57.135 29.630 0.00 0.00 0.00 3.18
3943 7610 7.813852 AATTGACACTTTAGCTACTCGTAAG 57.186 36.000 0.00 0.00 0.00 2.34
3944 7611 5.954296 TGACACTTTAGCTACTCGTAAGT 57.046 39.130 0.00 0.00 39.66 2.24
3945 7612 6.323203 TGACACTTTAGCTACTCGTAAGTT 57.677 37.500 5.24 0.00 36.92 2.66
3946 7613 6.147581 TGACACTTTAGCTACTCGTAAGTTG 58.852 40.000 5.24 4.82 36.92 3.16
3951 7618 1.641577 GCTACTCGTAAGTTGCCTGG 58.358 55.000 1.32 0.00 45.07 4.45
3952 7619 1.203994 GCTACTCGTAAGTTGCCTGGA 59.796 52.381 0.00 0.00 45.07 3.86
3953 7620 2.159085 GCTACTCGTAAGTTGCCTGGAT 60.159 50.000 0.00 0.00 45.07 3.41
3954 7621 3.679083 GCTACTCGTAAGTTGCCTGGATT 60.679 47.826 0.00 0.00 45.07 3.01
3955 7622 3.418684 ACTCGTAAGTTGCCTGGATTT 57.581 42.857 0.00 0.00 39.48 2.17
3956 7623 3.751518 ACTCGTAAGTTGCCTGGATTTT 58.248 40.909 0.00 0.00 39.48 1.82
3957 7624 4.901868 ACTCGTAAGTTGCCTGGATTTTA 58.098 39.130 0.00 0.00 39.48 1.52
3958 7625 5.310451 ACTCGTAAGTTGCCTGGATTTTAA 58.690 37.500 0.00 0.00 39.48 1.52
3959 7626 5.766174 ACTCGTAAGTTGCCTGGATTTTAAA 59.234 36.000 0.00 0.00 39.48 1.52
3960 7627 6.433093 ACTCGTAAGTTGCCTGGATTTTAAAT 59.567 34.615 0.00 0.00 39.48 1.40
3961 7628 7.039993 ACTCGTAAGTTGCCTGGATTTTAAATT 60.040 33.333 0.00 0.00 39.48 1.82
3962 7629 7.662897 TCGTAAGTTGCCTGGATTTTAAATTT 58.337 30.769 0.00 0.00 39.48 1.82
3963 7630 7.596995 TCGTAAGTTGCCTGGATTTTAAATTTG 59.403 33.333 0.00 0.00 39.48 2.32
3964 7631 7.148656 CGTAAGTTGCCTGGATTTTAAATTTGG 60.149 37.037 0.00 0.00 0.00 3.28
3965 7632 5.559770 AGTTGCCTGGATTTTAAATTTGGG 58.440 37.500 0.00 0.00 0.00 4.12
3966 7633 5.073008 AGTTGCCTGGATTTTAAATTTGGGT 59.927 36.000 0.00 0.00 0.00 4.51
3967 7634 5.159273 TGCCTGGATTTTAAATTTGGGTC 57.841 39.130 0.00 0.00 0.00 4.46
3968 7635 4.594920 TGCCTGGATTTTAAATTTGGGTCA 59.405 37.500 0.00 0.00 0.00 4.02
3969 7636 5.178061 GCCTGGATTTTAAATTTGGGTCAG 58.822 41.667 0.00 1.79 0.00 3.51
3970 7637 5.279960 GCCTGGATTTTAAATTTGGGTCAGT 60.280 40.000 0.00 0.00 0.00 3.41
3971 7638 6.398095 CCTGGATTTTAAATTTGGGTCAGTC 58.602 40.000 0.00 0.00 0.00 3.51
3972 7639 6.019779 TGGATTTTAAATTTGGGTCAGTCG 57.980 37.500 0.00 0.00 0.00 4.18
3973 7640 5.770663 TGGATTTTAAATTTGGGTCAGTCGA 59.229 36.000 0.00 0.00 0.00 4.20
3974 7641 6.435904 TGGATTTTAAATTTGGGTCAGTCGAT 59.564 34.615 0.00 0.00 0.00 3.59
3975 7642 7.039363 TGGATTTTAAATTTGGGTCAGTCGATT 60.039 33.333 0.00 0.00 0.00 3.34
3976 7643 7.817478 GGATTTTAAATTTGGGTCAGTCGATTT 59.183 33.333 0.00 0.00 0.00 2.17
3977 7644 9.203421 GATTTTAAATTTGGGTCAGTCGATTTT 57.797 29.630 0.00 0.00 0.00 1.82
3978 7645 8.582433 TTTTAAATTTGGGTCAGTCGATTTTC 57.418 30.769 0.00 0.00 0.00 2.29
3979 7646 7.519032 TTAAATTTGGGTCAGTCGATTTTCT 57.481 32.000 0.00 0.00 0.00 2.52
3980 7647 8.624367 TTAAATTTGGGTCAGTCGATTTTCTA 57.376 30.769 0.00 0.00 0.00 2.10
3981 7648 7.519032 AAATTTGGGTCAGTCGATTTTCTAA 57.481 32.000 0.00 0.00 0.00 2.10
3982 7649 5.934935 TTTGGGTCAGTCGATTTTCTAAC 57.065 39.130 0.00 0.00 0.00 2.34
3983 7650 3.934068 TGGGTCAGTCGATTTTCTAACC 58.066 45.455 0.00 0.00 0.00 2.85
3984 7651 3.325425 TGGGTCAGTCGATTTTCTAACCA 59.675 43.478 0.00 0.00 0.00 3.67
3985 7652 4.019681 TGGGTCAGTCGATTTTCTAACCAT 60.020 41.667 0.00 0.00 0.00 3.55
3986 7653 4.941873 GGGTCAGTCGATTTTCTAACCATT 59.058 41.667 0.00 0.00 0.00 3.16
3987 7654 5.163754 GGGTCAGTCGATTTTCTAACCATTG 60.164 44.000 0.00 0.00 0.00 2.82
3988 7655 5.642063 GGTCAGTCGATTTTCTAACCATTGA 59.358 40.000 0.00 0.00 0.00 2.57
3989 7656 6.316390 GGTCAGTCGATTTTCTAACCATTGAT 59.684 38.462 0.00 0.00 0.00 2.57
3990 7657 7.148239 GGTCAGTCGATTTTCTAACCATTGATT 60.148 37.037 0.00 0.00 0.00 2.57
3991 7658 8.237267 GTCAGTCGATTTTCTAACCATTGATTT 58.763 33.333 0.00 0.00 0.00 2.17
3992 7659 8.450964 TCAGTCGATTTTCTAACCATTGATTTC 58.549 33.333 0.00 0.00 0.00 2.17
3993 7660 8.454106 CAGTCGATTTTCTAACCATTGATTTCT 58.546 33.333 0.00 0.00 0.00 2.52
3994 7661 8.454106 AGTCGATTTTCTAACCATTGATTTCTG 58.546 33.333 0.00 0.00 0.00 3.02
3995 7662 7.218963 GTCGATTTTCTAACCATTGATTTCTGC 59.781 37.037 0.00 0.00 0.00 4.26
3996 7663 7.121168 TCGATTTTCTAACCATTGATTTCTGCT 59.879 33.333 0.00 0.00 0.00 4.24
3997 7664 7.430502 CGATTTTCTAACCATTGATTTCTGCTC 59.569 37.037 0.00 0.00 0.00 4.26
3998 7665 6.515272 TTTCTAACCATTGATTTCTGCTCC 57.485 37.500 0.00 0.00 0.00 4.70
3999 7666 4.191544 TCTAACCATTGATTTCTGCTCCG 58.808 43.478 0.00 0.00 0.00 4.63
4000 7667 2.787473 ACCATTGATTTCTGCTCCGA 57.213 45.000 0.00 0.00 0.00 4.55
4001 7668 2.636830 ACCATTGATTTCTGCTCCGAG 58.363 47.619 0.00 0.00 0.00 4.63
4002 7669 2.237143 ACCATTGATTTCTGCTCCGAGA 59.763 45.455 0.00 0.00 0.00 4.04
4003 7670 3.118112 ACCATTGATTTCTGCTCCGAGAT 60.118 43.478 0.00 0.00 0.00 2.75
4004 7671 3.881688 CCATTGATTTCTGCTCCGAGATT 59.118 43.478 0.00 0.00 0.00 2.40
4005 7672 4.261072 CCATTGATTTCTGCTCCGAGATTG 60.261 45.833 0.00 0.00 0.00 2.67
4006 7673 3.616956 TGATTTCTGCTCCGAGATTGT 57.383 42.857 0.00 0.00 0.00 2.71
4007 7674 3.942829 TGATTTCTGCTCCGAGATTGTT 58.057 40.909 0.00 0.00 0.00 2.83
4008 7675 4.326826 TGATTTCTGCTCCGAGATTGTTT 58.673 39.130 0.00 0.00 0.00 2.83
4009 7676 4.761739 TGATTTCTGCTCCGAGATTGTTTT 59.238 37.500 0.00 0.00 0.00 2.43
4010 7677 5.241506 TGATTTCTGCTCCGAGATTGTTTTT 59.758 36.000 0.00 0.00 0.00 1.94
4036 7703 2.038952 ACAACTGCTGAGATTGGTGCTA 59.961 45.455 0.00 0.00 0.00 3.49
4040 7707 3.276857 CTGCTGAGATTGGTGCTACATT 58.723 45.455 0.00 0.00 0.00 2.71
4070 7737 4.279671 TCTGTCCTTTGTTGTTTGTTGTGT 59.720 37.500 0.00 0.00 0.00 3.72
4081 7748 2.663826 TTGTTGTGTTGGGCTTGTTC 57.336 45.000 0.00 0.00 0.00 3.18
4093 7764 3.766591 TGGGCTTGTTCTTTTTGACTGAA 59.233 39.130 0.00 0.00 0.00 3.02
4099 7770 7.203218 GCTTGTTCTTTTTGACTGAACCTATT 58.797 34.615 0.00 0.00 39.24 1.73
4100 7771 7.168135 GCTTGTTCTTTTTGACTGAACCTATTG 59.832 37.037 0.00 0.00 39.24 1.90
4101 7772 7.038154 TGTTCTTTTTGACTGAACCTATTGG 57.962 36.000 0.00 0.00 39.24 3.16
4102 7773 6.040391 TGTTCTTTTTGACTGAACCTATTGGG 59.960 38.462 0.00 0.00 39.24 4.12
4124 7799 2.763651 GTAGTTTGCTACTGGGCCG 58.236 57.895 0.00 0.00 43.14 6.13
4141 7816 1.816224 GCCGAAGCCCATTAACTTTGA 59.184 47.619 0.00 0.00 30.10 2.69
4147 7822 4.591321 AGCCCATTAACTTTGAGATCCA 57.409 40.909 0.00 0.00 0.00 3.41
4208 7883 9.818796 TTCTGTTTTTATGTGTTTTTGCTTTTC 57.181 25.926 0.00 0.00 0.00 2.29
4440 8142 5.518865 AGGGCAATACCAATGTCACTAATT 58.481 37.500 0.00 0.00 42.05 1.40
4498 8232 7.100458 AGTAACAATGCCACTAATTCATTCC 57.900 36.000 0.00 0.00 0.00 3.01
4503 8237 4.591321 TGCCACTAATTCATTCCTCCTT 57.409 40.909 0.00 0.00 0.00 3.36
4504 8238 5.708736 TGCCACTAATTCATTCCTCCTTA 57.291 39.130 0.00 0.00 0.00 2.69
4506 8240 5.428457 TGCCACTAATTCATTCCTCCTTAGA 59.572 40.000 0.00 0.00 0.00 2.10
4518 8252 8.739972 TCATTCCTCCTTAGAAAACTATTTTGC 58.260 33.333 0.00 0.00 31.94 3.68
4526 8260 9.887406 CCTTAGAAAACTATTTTGCGAAAGTTA 57.113 29.630 5.18 0.00 31.94 2.24
4538 8272 9.769093 ATTTTGCGAAAGTTACACTATTGTATC 57.231 29.630 5.18 0.00 38.05 2.24
4796 8531 8.887036 TTTCATTTTCTTTCTTCTTAAAGGGC 57.113 30.769 0.00 0.00 37.13 5.19
4816 8551 7.220741 AGGGCTTCATTCTTTCTTAGAAAAC 57.779 36.000 8.82 0.00 45.62 2.43
4820 8555 9.833182 GGCTTCATTCTTTCTTAGAAAACTTAG 57.167 33.333 8.82 0.00 45.62 2.18
4877 9019 7.754851 TTTCTTCTGAAAGGGTAATACCAAC 57.245 36.000 12.03 0.00 37.34 3.77
4881 9023 2.040012 TGAAAGGGTAATACCAACGCCA 59.960 45.455 12.03 0.00 41.02 5.69
4882 9024 3.284617 GAAAGGGTAATACCAACGCCAT 58.715 45.455 12.03 0.00 41.02 4.40
4890 9032 5.163602 GGTAATACCAACGCCATGAATTCAA 60.164 40.000 13.09 0.00 38.42 2.69
4895 9037 4.704540 ACCAACGCCATGAATTCAATCTTA 59.295 37.500 13.09 0.00 0.00 2.10
4898 9040 5.235305 ACGCCATGAATTCAATCTTACAC 57.765 39.130 13.09 0.00 0.00 2.90
4904 9046 8.437742 GCCATGAATTCAATCTTACACAAAAAG 58.562 33.333 13.09 0.00 0.00 2.27
4905 9047 8.437742 CCATGAATTCAATCTTACACAAAAAGC 58.562 33.333 13.09 0.00 0.00 3.51
4906 9048 9.199982 CATGAATTCAATCTTACACAAAAAGCT 57.800 29.630 13.09 0.00 0.00 3.74
4907 9049 9.768662 ATGAATTCAATCTTACACAAAAAGCTT 57.231 25.926 13.09 0.00 0.00 3.74
4908 9050 9.248291 TGAATTCAATCTTACACAAAAAGCTTC 57.752 29.630 5.45 0.00 0.00 3.86
4909 9051 9.248291 GAATTCAATCTTACACAAAAAGCTTCA 57.752 29.630 0.00 0.00 0.00 3.02
4910 9052 9.768662 AATTCAATCTTACACAAAAAGCTTCAT 57.231 25.926 0.00 0.00 0.00 2.57
4911 9053 9.768662 ATTCAATCTTACACAAAAAGCTTCATT 57.231 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.623811 TGAGCAGTTTACCTCAGACCC 59.376 52.381 0.00 0.00 33.44 4.46
144 145 1.640670 ACATCAACCCTAGTGCCCATT 59.359 47.619 0.00 0.00 0.00 3.16
146 147 1.837439 CTACATCAACCCTAGTGCCCA 59.163 52.381 0.00 0.00 0.00 5.36
152 153 2.975489 AGGGCATCTACATCAACCCTAG 59.025 50.000 0.00 0.00 45.93 3.02
251 253 4.795962 GCATCCACGAAAACACTTTTCCAT 60.796 41.667 0.00 0.00 44.73 3.41
330 332 3.810687 TTGTGGGCCCCTCAGGACT 62.811 63.158 22.27 0.00 46.87 3.85
335 337 1.923395 CTACCTTGTGGGCCCCTCA 60.923 63.158 22.27 16.32 39.10 3.86
523 530 4.896482 CCTATTAACCTAGAGTCCAGTGCT 59.104 45.833 0.00 0.00 0.00 4.40
531 538 6.989894 TGGGACTAACCTATTAACCTAGAGT 58.010 40.000 0.00 0.00 38.98 3.24
659 668 1.006102 AAAGTCCGCGACCTGTCTG 60.006 57.895 8.23 0.00 32.18 3.51
660 669 1.006102 CAAAGTCCGCGACCTGTCT 60.006 57.895 8.23 0.00 32.18 3.41
661 670 1.006571 TCAAAGTCCGCGACCTGTC 60.007 57.895 8.23 0.00 32.18 3.51
668 677 1.801913 CTCCTCGTCAAAGTCCGCG 60.802 63.158 0.00 0.00 0.00 6.46
681 690 1.710816 CCTCCCATCCACTACTCCTC 58.289 60.000 0.00 0.00 0.00 3.71
705 714 3.787001 CTTGGGACTCGAGGCCCC 61.787 72.222 46.41 36.48 44.03 5.80
735 744 1.409427 GGAAGAGTAGGACATGGGACG 59.591 57.143 0.00 0.00 0.00 4.79
751 760 2.178521 CGGTCGTCGGTGAGGAAG 59.821 66.667 0.00 0.00 34.75 3.46
758 767 3.920196 AAAGGTGCGGTCGTCGGT 61.920 61.111 0.00 0.00 39.69 4.69
775 784 2.573009 TGAAGATGAGACCCATGAAGCA 59.427 45.455 0.00 0.00 35.17 3.91
776 785 3.272574 TGAAGATGAGACCCATGAAGC 57.727 47.619 0.00 0.00 35.17 3.86
777 786 4.056740 CGATGAAGATGAGACCCATGAAG 58.943 47.826 0.00 0.00 35.17 3.02
819 828 1.141053 CCAAGTCCTTATTCCCCTCCG 59.859 57.143 0.00 0.00 0.00 4.63
829 838 2.838202 GGTGATGTCCTCCAAGTCCTTA 59.162 50.000 0.00 0.00 0.00 2.69
845 854 9.884814 AACCTAGTCTAAATCTATAGTGGTGAT 57.115 33.333 0.00 0.00 0.00 3.06
848 857 9.810870 CCTAACCTAGTCTAAATCTATAGTGGT 57.189 37.037 0.00 0.00 0.00 4.16
854 863 8.512813 ACTGGACCTAACCTAGTCTAAATCTAT 58.487 37.037 0.00 0.00 33.39 1.98
857 866 6.238703 CGACTGGACCTAACCTAGTCTAAATC 60.239 46.154 0.00 0.00 36.69 2.17
885 895 8.190888 ACATTTTTGACATGTTTCGCTAAAAA 57.809 26.923 0.00 8.17 30.22 1.94
891 901 7.332003 TCATTACATTTTTGACATGTTTCGC 57.668 32.000 0.00 0.00 36.28 4.70
923 933 7.393841 ACCGGATGATTTTTAATTAAACCGA 57.606 32.000 25.28 11.49 39.11 4.69
924 934 8.376942 CAAACCGGATGATTTTTAATTAAACCG 58.623 33.333 20.31 20.31 37.02 4.44
965 975 2.236893 GCCATCCAACCATGTCCATTTT 59.763 45.455 0.00 0.00 0.00 1.82
983 993 1.066645 CAGTGATGCAGTAGTCAGCCA 60.067 52.381 0.00 0.00 0.00 4.75
984 994 1.066573 ACAGTGATGCAGTAGTCAGCC 60.067 52.381 0.00 0.00 0.00 4.85
985 995 2.376808 ACAGTGATGCAGTAGTCAGC 57.623 50.000 0.00 0.00 0.00 4.26
986 996 3.677121 GTGAACAGTGATGCAGTAGTCAG 59.323 47.826 0.00 0.00 0.00 3.51
987 997 3.321968 AGTGAACAGTGATGCAGTAGTCA 59.678 43.478 0.00 0.00 0.00 3.41
988 998 3.677121 CAGTGAACAGTGATGCAGTAGTC 59.323 47.826 0.00 0.00 33.67 2.59
989 999 3.555795 CCAGTGAACAGTGATGCAGTAGT 60.556 47.826 10.71 0.00 33.67 2.73
990 1000 2.998670 CCAGTGAACAGTGATGCAGTAG 59.001 50.000 10.71 0.00 33.67 2.57
991 1001 2.368548 ACCAGTGAACAGTGATGCAGTA 59.631 45.455 10.71 0.00 33.67 2.74
992 1002 1.141657 ACCAGTGAACAGTGATGCAGT 59.858 47.619 10.71 0.00 33.67 4.40
993 1003 1.888215 ACCAGTGAACAGTGATGCAG 58.112 50.000 10.71 0.00 33.67 4.41
994 1004 1.948834 CAACCAGTGAACAGTGATGCA 59.051 47.619 10.71 0.00 33.67 3.96
995 1005 1.267806 CCAACCAGTGAACAGTGATGC 59.732 52.381 10.71 0.00 33.67 3.91
996 1006 2.549754 GACCAACCAGTGAACAGTGATG 59.450 50.000 10.71 8.99 33.67 3.07
997 1007 2.487265 GGACCAACCAGTGAACAGTGAT 60.487 50.000 10.71 0.00 38.79 3.06
998 1008 1.134220 GGACCAACCAGTGAACAGTGA 60.134 52.381 10.71 0.00 38.79 3.41
999 1009 1.308998 GGACCAACCAGTGAACAGTG 58.691 55.000 0.00 2.98 38.79 3.66
1000 1010 0.182775 GGGACCAACCAGTGAACAGT 59.817 55.000 0.00 0.00 41.20 3.55
1001 1011 3.021451 GGGACCAACCAGTGAACAG 57.979 57.895 0.00 0.00 41.20 3.16
1015 1025 1.846124 TCCAAGGACCAGTGGGGAC 60.846 63.158 15.21 2.83 41.15 4.46
1016 1026 1.846124 GTCCAAGGACCAGTGGGGA 60.846 63.158 15.21 7.08 41.15 4.81
1017 1027 2.757077 GTCCAAGGACCAGTGGGG 59.243 66.667 15.21 4.45 44.81 4.96
1018 1028 1.553690 ATCGTCCAAGGACCAGTGGG 61.554 60.000 15.21 0.00 41.76 4.61
1019 1029 0.324943 AATCGTCCAAGGACCAGTGG 59.675 55.000 7.91 7.91 41.76 4.00
1020 1030 1.806542 CAAATCGTCCAAGGACCAGTG 59.193 52.381 13.35 3.60 41.76 3.66
1021 1031 1.271379 CCAAATCGTCCAAGGACCAGT 60.271 52.381 13.35 0.00 41.76 4.00
1022 1032 1.003118 TCCAAATCGTCCAAGGACCAG 59.997 52.381 13.35 1.03 41.76 4.00
1023 1033 1.003118 CTCCAAATCGTCCAAGGACCA 59.997 52.381 13.35 0.96 41.76 4.02
1024 1034 1.003233 ACTCCAAATCGTCCAAGGACC 59.997 52.381 13.35 0.00 41.76 4.46
1025 1035 2.474410 ACTCCAAATCGTCCAAGGAC 57.526 50.000 9.22 9.22 41.40 3.85
1026 1036 4.627284 TTAACTCCAAATCGTCCAAGGA 57.373 40.909 0.00 0.00 0.00 3.36
1027 1037 4.700213 ACATTAACTCCAAATCGTCCAAGG 59.300 41.667 0.00 0.00 0.00 3.61
1028 1038 5.880054 ACATTAACTCCAAATCGTCCAAG 57.120 39.130 0.00 0.00 0.00 3.61
1029 1039 5.048364 CCAACATTAACTCCAAATCGTCCAA 60.048 40.000 0.00 0.00 0.00 3.53
1030 1040 4.457603 CCAACATTAACTCCAAATCGTCCA 59.542 41.667 0.00 0.00 0.00 4.02
1031 1041 4.698304 TCCAACATTAACTCCAAATCGTCC 59.302 41.667 0.00 0.00 0.00 4.79
1032 1042 5.642063 TCTCCAACATTAACTCCAAATCGTC 59.358 40.000 0.00 0.00 0.00 4.20
1033 1043 5.556915 TCTCCAACATTAACTCCAAATCGT 58.443 37.500 0.00 0.00 0.00 3.73
1034 1044 6.489675 CATCTCCAACATTAACTCCAAATCG 58.510 40.000 0.00 0.00 0.00 3.34
1035 1045 6.268566 GCATCTCCAACATTAACTCCAAATC 58.731 40.000 0.00 0.00 0.00 2.17
1036 1046 5.127682 GGCATCTCCAACATTAACTCCAAAT 59.872 40.000 0.00 0.00 34.01 2.32
1037 1047 4.462483 GGCATCTCCAACATTAACTCCAAA 59.538 41.667 0.00 0.00 34.01 3.28
1038 1048 4.016444 GGCATCTCCAACATTAACTCCAA 58.984 43.478 0.00 0.00 34.01 3.53
1039 1049 3.620488 GGCATCTCCAACATTAACTCCA 58.380 45.455 0.00 0.00 34.01 3.86
1040 1050 2.614057 CGGCATCTCCAACATTAACTCC 59.386 50.000 0.00 0.00 34.01 3.85
1041 1051 3.270877 ACGGCATCTCCAACATTAACTC 58.729 45.455 0.00 0.00 34.01 3.01
1042 1052 3.350219 ACGGCATCTCCAACATTAACT 57.650 42.857 0.00 0.00 34.01 2.24
1043 1053 5.558273 CGATTACGGCATCTCCAACATTAAC 60.558 44.000 0.00 0.00 35.72 2.01
1044 1054 4.509970 CGATTACGGCATCTCCAACATTAA 59.490 41.667 0.00 0.00 35.72 1.40
1045 1055 4.055360 CGATTACGGCATCTCCAACATTA 58.945 43.478 0.00 0.00 35.72 1.90
1046 1056 2.872245 CGATTACGGCATCTCCAACATT 59.128 45.455 0.00 0.00 35.72 2.71
1047 1057 2.158957 ACGATTACGGCATCTCCAACAT 60.159 45.455 0.00 0.00 44.46 2.71
1048 1058 1.206132 ACGATTACGGCATCTCCAACA 59.794 47.619 0.00 0.00 44.46 3.33
1049 1059 1.935933 ACGATTACGGCATCTCCAAC 58.064 50.000 0.00 0.00 44.46 3.77
1050 1060 2.684001 AACGATTACGGCATCTCCAA 57.316 45.000 0.00 0.00 44.46 3.53
1051 1061 5.047590 ACATATAACGATTACGGCATCTCCA 60.048 40.000 0.00 0.00 44.46 3.86
1052 1062 5.288712 CACATATAACGATTACGGCATCTCC 59.711 44.000 0.00 0.00 44.46 3.71
1053 1063 5.862323 ACACATATAACGATTACGGCATCTC 59.138 40.000 0.00 0.00 44.46 2.75
1054 1064 5.633601 CACACATATAACGATTACGGCATCT 59.366 40.000 0.00 0.00 44.46 2.90
1061 1071 9.286946 GAGCCTATACACACATATAACGATTAC 57.713 37.037 0.00 0.00 0.00 1.89
1068 1078 5.780282 AGCTGGAGCCTATACACACATATAA 59.220 40.000 0.00 0.00 43.38 0.98
1069 1079 5.185828 CAGCTGGAGCCTATACACACATATA 59.814 44.000 5.57 0.00 43.38 0.86
1070 1080 4.020751 CAGCTGGAGCCTATACACACATAT 60.021 45.833 5.57 0.00 43.38 1.78
1071 1081 3.321968 CAGCTGGAGCCTATACACACATA 59.678 47.826 5.57 0.00 43.38 2.29
1072 1082 2.103771 CAGCTGGAGCCTATACACACAT 59.896 50.000 5.57 0.00 43.38 3.21
1073 1083 1.482182 CAGCTGGAGCCTATACACACA 59.518 52.381 5.57 0.00 43.38 3.72
1074 1084 1.482593 ACAGCTGGAGCCTATACACAC 59.517 52.381 19.93 0.00 43.38 3.82
1127 1137 6.945218 TGCCATTTAGGAAAAATGTATGCTT 58.055 32.000 9.03 0.00 41.22 3.91
1461 1475 2.604686 AAGAGCACGGCCAGGAGA 60.605 61.111 2.24 0.00 0.00 3.71
1962 4887 6.586082 GCACAAATTAACGGATCAGATTTGTT 59.414 34.615 16.21 6.49 44.16 2.83
1963 4888 6.092748 GCACAAATTAACGGATCAGATTTGT 58.907 36.000 14.26 14.26 46.18 2.83
1965 4890 5.184864 TGGCACAAATTAACGGATCAGATTT 59.815 36.000 0.00 0.00 31.92 2.17
1966 4891 4.704540 TGGCACAAATTAACGGATCAGATT 59.295 37.500 0.00 0.00 31.92 2.40
1967 4892 4.269183 TGGCACAAATTAACGGATCAGAT 58.731 39.130 0.00 0.00 31.92 2.90
1968 4893 3.680490 TGGCACAAATTAACGGATCAGA 58.320 40.909 0.00 0.00 31.92 3.27
1992 5052 7.147312 TCAGATTTACAACTTTGCAAATGGAG 58.853 34.615 13.23 3.05 35.03 3.86
1993 5053 7.048629 TCAGATTTACAACTTTGCAAATGGA 57.951 32.000 13.23 2.59 35.03 3.41
1994 5054 7.712264 TTCAGATTTACAACTTTGCAAATGG 57.288 32.000 13.23 4.51 35.03 3.16
1995 5055 8.225107 CCATTCAGATTTACAACTTTGCAAATG 58.775 33.333 13.23 11.67 35.03 2.32
1996 5056 8.149647 TCCATTCAGATTTACAACTTTGCAAAT 58.850 29.630 13.23 0.00 36.97 2.32
1998 5058 7.048629 TCCATTCAGATTTACAACTTTGCAA 57.951 32.000 0.00 0.00 0.00 4.08
1999 5059 6.647334 TCCATTCAGATTTACAACTTTGCA 57.353 33.333 0.00 0.00 0.00 4.08
2001 5061 7.201376 CGCAATCCATTCAGATTTACAACTTTG 60.201 37.037 0.00 0.00 34.19 2.77
2006 5070 5.895636 ACGCAATCCATTCAGATTTACAA 57.104 34.783 0.00 0.00 34.19 2.41
2132 5228 1.779025 CTGACTGCACGCACTTTGCT 61.779 55.000 0.00 0.00 42.25 3.91
2157 5253 6.523201 GTCGCAATGTACAGAACAAATTAAGG 59.477 38.462 0.33 0.00 42.70 2.69
2161 5257 5.238432 TCAGTCGCAATGTACAGAACAAATT 59.762 36.000 0.33 0.00 42.70 1.82
2162 5258 4.754618 TCAGTCGCAATGTACAGAACAAAT 59.245 37.500 0.33 0.00 42.70 2.32
2163 5259 4.025229 GTCAGTCGCAATGTACAGAACAAA 60.025 41.667 0.33 0.00 42.70 2.83
2164 5260 3.493129 GTCAGTCGCAATGTACAGAACAA 59.507 43.478 0.33 0.00 42.70 2.83
2178 5274 4.294416 ACACTATCACTATGTCAGTCGC 57.706 45.455 0.00 0.00 34.26 5.19
2291 5397 1.846712 AAGCCCCAGAGGAAGCTGAC 61.847 60.000 0.00 0.00 38.14 3.51
2503 5725 3.964031 TCCCCTTCTTCTTCTCTATCAGC 59.036 47.826 0.00 0.00 0.00 4.26
2551 5773 3.083997 AGCCCATGGAGGTCGGAC 61.084 66.667 15.22 0.00 34.66 4.79
2587 6237 5.045651 ACCAAGAATCATGGCGATGGATATA 60.046 40.000 8.98 0.00 41.89 0.86
2655 6305 2.423898 GCTGCTGCCATGAATGCCT 61.424 57.895 3.85 0.00 0.00 4.75
2729 6379 1.006825 CGCAAGTCATCGTCGTCCAA 61.007 55.000 0.00 0.00 0.00 3.53
3100 6756 1.515954 CGACGCCAGGGTCAAGTAT 59.484 57.895 14.29 0.00 36.73 2.12
3304 6960 2.113986 GTGAGGCAGTGCTTGGGT 59.886 61.111 16.11 0.00 0.00 4.51
3394 7050 0.548197 TGGGGACGGGTATGAACCTT 60.548 55.000 0.00 0.00 45.95 3.50
3634 7290 2.625314 TCTAGCATTCGTGGATCTGGAG 59.375 50.000 0.00 0.00 0.00 3.86
3698 7354 7.844009 AGTACTAATTGGGTAAACGAGAATGA 58.156 34.615 0.00 0.00 0.00 2.57
3716 7376 4.330250 ACCACGAAGCTGAGTAGTACTAA 58.670 43.478 3.61 0.00 0.00 2.24
3737 7400 4.452890 AAGCGATATAATGTTGCACGAC 57.547 40.909 0.00 0.00 0.00 4.34
3760 7423 4.858935 TCAGCAGCACAAACTAAATCAAC 58.141 39.130 0.00 0.00 0.00 3.18
3782 7446 3.252215 TCCGTCAAAAATCGCAGACAAAT 59.748 39.130 0.00 0.00 42.51 2.32
3799 7463 3.002759 GCCATTTAGATGAAGCTTCCGTC 59.997 47.826 23.42 19.70 35.16 4.79
3801 7465 2.945008 TGCCATTTAGATGAAGCTTCCG 59.055 45.455 23.42 2.30 35.16 4.30
3802 7466 4.641989 TCTTGCCATTTAGATGAAGCTTCC 59.358 41.667 23.42 9.23 35.16 3.46
3834 7498 8.762645 GGACATACCAAGATATATGGATTCAGA 58.237 37.037 12.76 0.00 40.56 3.27
3870 7534 1.980765 TGGAAGATCAGCAAGGACAGT 59.019 47.619 0.00 0.00 0.00 3.55
3872 7536 2.573009 TCATGGAAGATCAGCAAGGACA 59.427 45.455 0.00 0.00 0.00 4.02
3873 7537 3.272574 TCATGGAAGATCAGCAAGGAC 57.727 47.619 0.00 0.00 0.00 3.85
3875 7539 3.618351 ACTTCATGGAAGATCAGCAAGG 58.382 45.455 12.56 0.00 41.71 3.61
3876 7540 6.939132 AATACTTCATGGAAGATCAGCAAG 57.061 37.500 12.56 0.00 41.71 4.01
3925 7592 4.326548 GGCAACTTACGAGTAGCTAAAGTG 59.673 45.833 8.22 5.07 34.21 3.16
3926 7593 4.492611 GGCAACTTACGAGTAGCTAAAGT 58.507 43.478 0.00 0.00 34.21 2.66
3943 7610 5.312895 ACCCAAATTTAAAATCCAGGCAAC 58.687 37.500 0.00 0.00 0.00 4.17
3944 7611 5.072329 TGACCCAAATTTAAAATCCAGGCAA 59.928 36.000 0.00 0.00 0.00 4.52
3945 7612 4.594920 TGACCCAAATTTAAAATCCAGGCA 59.405 37.500 0.00 0.00 0.00 4.75
3946 7613 5.159273 TGACCCAAATTTAAAATCCAGGC 57.841 39.130 0.00 0.00 0.00 4.85
3947 7614 6.358974 ACTGACCCAAATTTAAAATCCAGG 57.641 37.500 0.00 0.00 0.00 4.45
3948 7615 6.072175 TCGACTGACCCAAATTTAAAATCCAG 60.072 38.462 0.00 0.00 0.00 3.86
3949 7616 5.770663 TCGACTGACCCAAATTTAAAATCCA 59.229 36.000 0.00 0.00 0.00 3.41
3950 7617 6.262193 TCGACTGACCCAAATTTAAAATCC 57.738 37.500 0.00 0.00 0.00 3.01
3951 7618 8.757164 AAATCGACTGACCCAAATTTAAAATC 57.243 30.769 0.00 0.00 0.00 2.17
3952 7619 9.203421 GAAAATCGACTGACCCAAATTTAAAAT 57.797 29.630 0.00 0.00 0.00 1.82
3953 7620 8.417884 AGAAAATCGACTGACCCAAATTTAAAA 58.582 29.630 0.00 0.00 0.00 1.52
3954 7621 7.947282 AGAAAATCGACTGACCCAAATTTAAA 58.053 30.769 0.00 0.00 0.00 1.52
3955 7622 7.519032 AGAAAATCGACTGACCCAAATTTAA 57.481 32.000 0.00 0.00 0.00 1.52
3956 7623 8.508875 GTTAGAAAATCGACTGACCCAAATTTA 58.491 33.333 0.00 0.00 0.00 1.40
3957 7624 7.368059 GTTAGAAAATCGACTGACCCAAATTT 58.632 34.615 0.00 0.00 0.00 1.82
3958 7625 6.072119 GGTTAGAAAATCGACTGACCCAAATT 60.072 38.462 3.99 0.00 36.99 1.82
3959 7626 5.414765 GGTTAGAAAATCGACTGACCCAAAT 59.585 40.000 3.99 0.00 36.99 2.32
3960 7627 4.758165 GGTTAGAAAATCGACTGACCCAAA 59.242 41.667 3.99 0.00 36.99 3.28
3961 7628 4.202377 TGGTTAGAAAATCGACTGACCCAA 60.202 41.667 10.88 0.00 40.51 4.12
3962 7629 3.325425 TGGTTAGAAAATCGACTGACCCA 59.675 43.478 10.88 0.00 40.51 4.51
3963 7630 3.934068 TGGTTAGAAAATCGACTGACCC 58.066 45.455 10.88 0.00 40.51 4.46
3964 7631 5.642063 TCAATGGTTAGAAAATCGACTGACC 59.358 40.000 7.53 7.53 41.25 4.02
3965 7632 6.721571 TCAATGGTTAGAAAATCGACTGAC 57.278 37.500 0.00 0.00 0.00 3.51
3966 7633 7.921786 AATCAATGGTTAGAAAATCGACTGA 57.078 32.000 0.00 0.00 0.00 3.41
3967 7634 8.454106 AGAAATCAATGGTTAGAAAATCGACTG 58.546 33.333 0.00 0.00 0.00 3.51
3968 7635 8.454106 CAGAAATCAATGGTTAGAAAATCGACT 58.546 33.333 0.00 0.00 0.00 4.18
3969 7636 7.218963 GCAGAAATCAATGGTTAGAAAATCGAC 59.781 37.037 0.00 0.00 0.00 4.20
3970 7637 7.121168 AGCAGAAATCAATGGTTAGAAAATCGA 59.879 33.333 0.00 0.00 0.00 3.59
3971 7638 7.253422 AGCAGAAATCAATGGTTAGAAAATCG 58.747 34.615 0.00 0.00 0.00 3.34
3972 7639 7.704047 GGAGCAGAAATCAATGGTTAGAAAATC 59.296 37.037 0.00 0.00 0.00 2.17
3973 7640 7.550712 GGAGCAGAAATCAATGGTTAGAAAAT 58.449 34.615 0.00 0.00 0.00 1.82
3974 7641 6.349280 CGGAGCAGAAATCAATGGTTAGAAAA 60.349 38.462 0.00 0.00 0.00 2.29
3975 7642 5.123820 CGGAGCAGAAATCAATGGTTAGAAA 59.876 40.000 0.00 0.00 0.00 2.52
3976 7643 4.635765 CGGAGCAGAAATCAATGGTTAGAA 59.364 41.667 0.00 0.00 0.00 2.10
3977 7644 4.081142 TCGGAGCAGAAATCAATGGTTAGA 60.081 41.667 0.00 0.00 0.00 2.10
3978 7645 4.191544 TCGGAGCAGAAATCAATGGTTAG 58.808 43.478 0.00 0.00 0.00 2.34
3979 7646 4.081142 TCTCGGAGCAGAAATCAATGGTTA 60.081 41.667 0.00 0.00 0.00 2.85
3980 7647 3.012518 CTCGGAGCAGAAATCAATGGTT 58.987 45.455 0.00 0.00 0.00 3.67
3981 7648 2.237143 TCTCGGAGCAGAAATCAATGGT 59.763 45.455 0.00 0.00 0.00 3.55
3982 7649 2.910199 TCTCGGAGCAGAAATCAATGG 58.090 47.619 0.00 0.00 0.00 3.16
3983 7650 4.334759 ACAATCTCGGAGCAGAAATCAATG 59.665 41.667 0.00 0.00 0.00 2.82
3984 7651 4.521146 ACAATCTCGGAGCAGAAATCAAT 58.479 39.130 0.00 0.00 0.00 2.57
3985 7652 3.942829 ACAATCTCGGAGCAGAAATCAA 58.057 40.909 0.00 0.00 0.00 2.57
3986 7653 3.616956 ACAATCTCGGAGCAGAAATCA 57.383 42.857 0.00 0.00 0.00 2.57
3987 7654 4.954092 AAACAATCTCGGAGCAGAAATC 57.046 40.909 0.00 0.00 0.00 2.17
3988 7655 5.712152 AAAAACAATCTCGGAGCAGAAAT 57.288 34.783 0.00 0.00 0.00 2.17
4008 7675 5.827797 ACCAATCTCAGCAGTTGTCTAAAAA 59.172 36.000 0.00 0.00 0.00 1.94
4009 7676 5.239306 CACCAATCTCAGCAGTTGTCTAAAA 59.761 40.000 0.00 0.00 0.00 1.52
4010 7677 4.756642 CACCAATCTCAGCAGTTGTCTAAA 59.243 41.667 0.00 0.00 0.00 1.85
4011 7678 4.318332 CACCAATCTCAGCAGTTGTCTAA 58.682 43.478 0.00 0.00 0.00 2.10
4012 7679 3.866066 GCACCAATCTCAGCAGTTGTCTA 60.866 47.826 0.00 0.00 0.00 2.59
4013 7680 2.775890 CACCAATCTCAGCAGTTGTCT 58.224 47.619 0.00 0.00 0.00 3.41
4014 7681 1.198637 GCACCAATCTCAGCAGTTGTC 59.801 52.381 0.00 0.00 0.00 3.18
4015 7682 1.202855 AGCACCAATCTCAGCAGTTGT 60.203 47.619 0.00 0.00 0.00 3.32
4016 7683 1.531423 AGCACCAATCTCAGCAGTTG 58.469 50.000 0.00 0.00 0.00 3.16
4017 7684 2.038952 TGTAGCACCAATCTCAGCAGTT 59.961 45.455 0.00 0.00 0.00 3.16
4018 7685 1.625315 TGTAGCACCAATCTCAGCAGT 59.375 47.619 0.00 0.00 0.00 4.40
4019 7686 2.391616 TGTAGCACCAATCTCAGCAG 57.608 50.000 0.00 0.00 0.00 4.24
4020 7687 3.354948 AATGTAGCACCAATCTCAGCA 57.645 42.857 0.00 0.00 0.00 4.41
4021 7688 4.708726 AAAATGTAGCACCAATCTCAGC 57.291 40.909 0.00 0.00 0.00 4.26
4055 7722 2.037772 AGCCCAACACAACAAACAACAA 59.962 40.909 0.00 0.00 0.00 2.83
4070 7737 3.766591 TCAGTCAAAAAGAACAAGCCCAA 59.233 39.130 0.00 0.00 0.00 4.12
4107 7778 0.978151 TTCGGCCCAGTAGCAAACTA 59.022 50.000 0.00 0.00 35.76 2.24
4108 7779 0.321653 CTTCGGCCCAGTAGCAAACT 60.322 55.000 0.00 0.00 39.81 2.66
4124 7799 4.949856 TGGATCTCAAAGTTAATGGGCTTC 59.050 41.667 0.00 0.00 0.00 3.86
4130 7805 4.530875 AGGGCTGGATCTCAAAGTTAATG 58.469 43.478 0.00 0.00 0.00 1.90
4138 7813 2.045524 GAGATGAGGGCTGGATCTCAA 58.954 52.381 12.37 0.00 42.40 3.02
4141 7816 2.328319 GAAGAGATGAGGGCTGGATCT 58.672 52.381 0.00 0.00 0.00 2.75
4147 7822 2.273619 ACAAAGGAAGAGATGAGGGCT 58.726 47.619 0.00 0.00 0.00 5.19
4243 7918 6.366061 TCATCTATCATCGCAAAAATACCGAG 59.634 38.462 0.00 0.00 34.21 4.63
4245 7920 6.146184 ACTCATCTATCATCGCAAAAATACCG 59.854 38.462 0.00 0.00 0.00 4.02
4475 8209 7.100458 AGGAATGAATTAGTGGCATTGTTAC 57.900 36.000 0.00 0.00 32.80 2.50
4498 8232 8.290325 ACTTTCGCAAAATAGTTTTCTAAGGAG 58.710 33.333 0.00 0.00 35.90 3.69
4503 8237 9.654417 GTGTAACTTTCGCAAAATAGTTTTCTA 57.346 29.630 0.00 0.00 36.78 2.10
4504 8238 8.556517 GTGTAACTTTCGCAAAATAGTTTTCT 57.443 30.769 0.00 0.00 0.00 2.52
4517 8251 7.535489 AAGGATACAATAGTGTAACTTTCGC 57.465 36.000 7.17 0.00 44.20 4.70
4538 8272 8.306761 ACCTTTTTCAAGTATGCAAGAATAAGG 58.693 33.333 22.29 22.29 45.99 2.69
4553 8287 5.122082 ACACACAAATTGCACCTTTTTCAAG 59.878 36.000 0.00 0.00 0.00 3.02
4562 8296 7.508965 CACAAAATATACACACAAATTGCACC 58.491 34.615 0.00 0.00 0.00 5.01
4851 8993 8.803235 GTTGGTATTACCCTTTCAGAAGAAAAT 58.197 33.333 10.37 0.00 38.53 1.82
4852 8994 7.040961 CGTTGGTATTACCCTTTCAGAAGAAAA 60.041 37.037 10.37 0.00 38.53 2.29
4877 9019 5.233957 TGTGTAAGATTGAATTCATGGCG 57.766 39.130 9.40 0.00 0.00 5.69
4881 9023 9.768662 AAGCTTTTTGTGTAAGATTGAATTCAT 57.231 25.926 9.40 0.00 30.71 2.57
4882 9024 9.248291 GAAGCTTTTTGTGTAAGATTGAATTCA 57.752 29.630 3.38 3.38 31.93 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.