Multiple sequence alignment - TraesCS6D01G213300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G213300
chr6D
100.000
5834
0
0
1
5834
303056540
303062373
0.000000e+00
10774.0
1
TraesCS6D01G213300
chr6A
94.860
5389
188
30
24
5382
411766982
411772311
0.000000e+00
8335.0
2
TraesCS6D01G213300
chr6A
88.508
583
25
13
4163
4731
441440964
441440410
0.000000e+00
667.0
3
TraesCS6D01G213300
chr6A
97.403
308
8
0
3992
4299
441441268
441440961
5.180000e-145
525.0
4
TraesCS6D01G213300
chr6A
91.273
275
13
5
3325
3598
440694499
440694235
1.190000e-96
364.0
5
TraesCS6D01G213300
chr6A
84.530
362
14
14
5490
5834
411772318
411772654
2.620000e-83
320.0
6
TraesCS6D01G213300
chr6A
95.327
107
5
0
3826
3932
441443388
441443282
2.800000e-38
171.0
7
TraesCS6D01G213300
chr6A
98.039
51
1
0
3924
3974
441441316
441441266
8.050000e-14
89.8
8
TraesCS6D01G213300
chr6B
94.929
2682
96
19
849
3506
468731990
468734655
0.000000e+00
4163.0
9
TraesCS6D01G213300
chr6B
95.856
2027
68
8
3674
5693
468735100
468737117
0.000000e+00
3264.0
10
TraesCS6D01G213300
chr6B
91.135
846
45
18
24
851
468730988
468731821
0.000000e+00
1120.0
11
TraesCS6D01G213300
chr6B
88.274
307
24
5
1653
1950
131684026
131683723
2.000000e-94
357.0
12
TraesCS6D01G213300
chr6B
97.619
168
3
1
3510
3676
468734820
468734987
2.660000e-73
287.0
13
TraesCS6D01G213300
chr6B
94.203
138
3
1
5702
5834
468738574
468738711
7.660000e-49
206.0
14
TraesCS6D01G213300
chr7B
90.654
428
22
8
1539
1950
619156847
619156422
2.380000e-153
553.0
15
TraesCS6D01G213300
chr7B
83.108
592
39
28
972
1549
619158146
619157602
3.160000e-132
483.0
16
TraesCS6D01G213300
chr4A
89.151
424
30
6
1540
1950
68459557
68459137
1.120000e-141
514.0
17
TraesCS6D01G213300
chr4A
92.638
163
9
3
3318
3478
48905839
48906000
1.260000e-56
231.0
18
TraesCS6D01G213300
chr1B
88.208
424
34
7
1540
1950
23988590
23989010
5.250000e-135
492.0
19
TraesCS6D01G213300
chr1B
88.208
424
34
7
1540
1950
24092073
24091653
5.250000e-135
492.0
20
TraesCS6D01G213300
chr1B
86.813
182
20
4
2586
2764
566085912
566086092
3.570000e-47
200.0
21
TraesCS6D01G213300
chr5B
87.736
424
35
8
1540
1950
506660556
506660975
4.090000e-131
479.0
22
TraesCS6D01G213300
chr5B
91.265
332
21
5
1540
1866
56555438
56555766
4.150000e-121
446.0
23
TraesCS6D01G213300
chr5B
93.750
160
6
3
3313
3472
665744468
665744623
2.720000e-58
237.0
24
TraesCS6D01G213300
chr1A
93.750
160
8
2
3314
3472
155857706
155857864
7.560000e-59
239.0
25
TraesCS6D01G213300
chr5D
93.750
160
6
3
3313
3472
528717277
528717432
2.720000e-58
237.0
26
TraesCS6D01G213300
chr5A
93.750
160
6
3
3313
3472
656872284
656872439
2.720000e-58
237.0
27
TraesCS6D01G213300
chr3D
92.727
165
11
1
3311
3475
288550614
288550451
2.720000e-58
237.0
28
TraesCS6D01G213300
chr1D
89.385
179
14
5
3291
3468
7349878
7349704
2.740000e-53
220.0
29
TraesCS6D01G213300
chrUn
87.097
186
22
2
2586
2770
368162132
368162316
5.920000e-50
209.0
30
TraesCS6D01G213300
chr2B
86.772
189
23
2
2586
2773
38126387
38126200
5.920000e-50
209.0
31
TraesCS6D01G213300
chr2B
86.772
189
23
2
2586
2773
38173642
38173455
5.920000e-50
209.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G213300
chr6D
303056540
303062373
5833
False
10774.0
10774
100.00000
1
5834
1
chr6D.!!$F1
5833
1
TraesCS6D01G213300
chr6A
411766982
411772654
5672
False
4327.5
8335
89.69500
24
5834
2
chr6A.!!$F1
5810
2
TraesCS6D01G213300
chr6A
441440410
441443388
2978
True
363.2
667
94.81925
3826
4731
4
chr6A.!!$R2
905
3
TraesCS6D01G213300
chr6B
468730988
468738711
7723
False
1808.0
4163
94.74840
24
5834
5
chr6B.!!$F1
5810
4
TraesCS6D01G213300
chr7B
619156422
619158146
1724
True
518.0
553
86.88100
972
1950
2
chr7B.!!$R1
978
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
644
657
0.036388
TTGCTTCCCGATCGCTTTCT
60.036
50.000
10.32
0.00
0.00
2.52
F
1453
1660
0.859232
CAGTCGAACGTTGGGAGTTG
59.141
55.000
5.00
1.15
31.14
3.16
F
1595
2567
3.007290
AGACAGAGTGCTTGCATAGTTCA
59.993
43.478
0.00
0.00
0.00
3.18
F
3091
4088
3.483808
TTTGATGGCAGTCAGTGTGTA
57.516
42.857
0.00
0.00
0.00
2.90
F
4242
7628
0.240945
CGGCACAAGGTGTTGAATCC
59.759
55.000
0.00
0.00
37.10
3.01
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2239
3232
0.183492
AACAGCCACAGCCTGAGAAA
59.817
50.00
0.0
0.0
41.25
2.52
R
2778
3773
4.114073
TGTGCAAAGAAGTGAAAATGCTG
58.886
39.13
0.0
0.0
34.97
4.41
R
3300
4297
4.392445
CGGAGGGAGTATATCTTCTGTACG
59.608
50.00
0.0
0.0
0.00
3.67
R
4308
7694
0.251297
CACCATCACTTGCCCCAGAA
60.251
55.00
0.0
0.0
0.00
3.02
R
5354
8761
0.107165
CCCACTAACCCAGCTTAGCC
60.107
60.00
0.0
0.0
0.00
3.93
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
18
19
2.249692
ACGTGTGGGCGTTATTTGG
58.750
52.632
0.00
0.00
43.04
3.28
19
20
0.250381
ACGTGTGGGCGTTATTTGGA
60.250
50.000
0.00
0.00
43.04
3.53
20
21
0.167251
CGTGTGGGCGTTATTTGGAC
59.833
55.000
0.00
0.00
0.00
4.02
21
22
0.524414
GTGTGGGCGTTATTTGGACC
59.476
55.000
0.00
0.00
0.00
4.46
22
23
0.609681
TGTGGGCGTTATTTGGACCC
60.610
55.000
0.00
0.00
41.24
4.46
32
33
6.391537
GCGTTATTTGGACCCTTTCAAAATA
58.608
36.000
0.00
0.00
38.59
1.40
47
48
8.981647
CCTTTCAAAATACAGGAACATGAAAAG
58.018
33.333
0.00
0.00
35.59
2.27
54
55
3.821033
ACAGGAACATGAAAAGTGTAGGC
59.179
43.478
0.00
0.00
0.00
3.93
60
61
6.374333
GGAACATGAAAAGTGTAGGCATAGAA
59.626
38.462
0.00
0.00
0.00
2.10
126
130
9.883142
TGATAACACAAGAAAACAAAGGAATTT
57.117
25.926
0.00
0.00
0.00
1.82
147
151
9.929180
GAATTTTATAAAGAAGTTTGAGGGCTT
57.071
29.630
0.00
0.00
0.00
4.35
168
172
7.378181
GGCTTCTTTGATACAAAGGAATTTCA
58.622
34.615
19.43
1.41
0.00
2.69
169
173
8.037166
GGCTTCTTTGATACAAAGGAATTTCAT
58.963
33.333
19.43
0.00
0.00
2.57
392
397
0.179097
GTTGGATCTCCGAGCAGTCC
60.179
60.000
0.00
7.14
39.43
3.85
394
399
2.122167
GGATCTCCGAGCAGTCCGT
61.122
63.158
0.00
0.00
0.00
4.69
404
410
2.617274
GCAGTCCGTGGCTGGTTTC
61.617
63.158
7.47
0.00
34.73
2.78
584
595
2.908073
CGAACCCAAGGCAGCACAC
61.908
63.158
0.00
0.00
0.00
3.82
617
630
0.326595
TGCCAAGCCACCGAAAGATA
59.673
50.000
0.00
0.00
0.00
1.98
643
656
0.802494
TTTGCTTCCCGATCGCTTTC
59.198
50.000
10.32
0.00
0.00
2.62
644
657
0.036388
TTGCTTCCCGATCGCTTTCT
60.036
50.000
10.32
0.00
0.00
2.52
705
719
2.215196
GCTTTCGTGGTCTGGTTGTAA
58.785
47.619
0.00
0.00
0.00
2.41
719
733
2.137523
GTTGTAATCGACCACAACCGT
58.862
47.619
23.86
0.00
45.62
4.83
720
734
2.529780
TGTAATCGACCACAACCGTT
57.470
45.000
0.00
0.00
0.00
4.44
721
735
2.136728
TGTAATCGACCACAACCGTTG
58.863
47.619
9.80
9.80
0.00
4.10
722
736
2.223994
TGTAATCGACCACAACCGTTGA
60.224
45.455
18.19
0.00
0.00
3.18
1086
1278
1.222113
GGAGAAGAAGAAGGCGGGG
59.778
63.158
0.00
0.00
0.00
5.73
1277
1474
1.382146
AGGTCGCCGAATCCCCTAA
60.382
57.895
0.00
0.00
0.00
2.69
1453
1660
0.859232
CAGTCGAACGTTGGGAGTTG
59.141
55.000
5.00
1.15
31.14
3.16
1586
2558
3.290308
ACGAAGTAGACAGAGTGCTTG
57.710
47.619
0.00
0.00
41.94
4.01
1595
2567
3.007290
AGACAGAGTGCTTGCATAGTTCA
59.993
43.478
0.00
0.00
0.00
3.18
1724
2701
6.971184
CACAGATTTTGGCTATGATTGTTCTC
59.029
38.462
0.00
0.00
0.00
2.87
1780
2757
5.701224
TGTGGATTCCTTTCCTTTTGTAGT
58.299
37.500
3.95
0.00
36.68
2.73
2154
3147
9.102757
GAATTATTGAGTTCTGCACTTCTATGA
57.897
33.333
0.00
0.00
35.01
2.15
2155
3148
9.453572
AATTATTGAGTTCTGCACTTCTATGAA
57.546
29.630
0.00
0.00
35.01
2.57
2215
3208
8.405531
TGTACTAAATATCCAGCAAGCAATTTC
58.594
33.333
0.00
0.00
0.00
2.17
2239
3232
6.154021
TCTGCGTTCTTAATAGTTAGGTCCTT
59.846
38.462
0.00
0.00
0.00
3.36
2410
3403
4.274602
TGCGTAAGTATCTTGAAACCCA
57.725
40.909
0.00
0.00
41.68
4.51
2593
3586
9.502091
TTGTGAAGTATAGAGCACTATGTTTTT
57.498
29.630
13.28
3.30
39.36
1.94
2833
3828
4.202357
TGTGGTGCTTCTAGTTTGACTCAT
60.202
41.667
0.00
0.00
0.00
2.90
2834
3829
4.153117
GTGGTGCTTCTAGTTTGACTCATG
59.847
45.833
0.00
0.00
0.00
3.07
3091
4088
3.483808
TTTGATGGCAGTCAGTGTGTA
57.516
42.857
0.00
0.00
0.00
2.90
3111
4108
6.663093
TGTGTATTGAATTGCTTGGGACTTAT
59.337
34.615
0.00
0.00
0.00
1.73
3300
4297
9.502145
TTGCACGTTAATCATCTTTCATATTTC
57.498
29.630
0.00
0.00
0.00
2.17
3301
4298
7.850492
TGCACGTTAATCATCTTTCATATTTCG
59.150
33.333
0.00
0.00
0.00
3.46
3302
4299
7.850982
GCACGTTAATCATCTTTCATATTTCGT
59.149
33.333
0.00
0.00
0.00
3.85
3378
4380
5.126384
TGTGAATCGGATGTATGTAGACACA
59.874
40.000
0.00
0.00
39.52
3.72
3458
4460
9.883142
TCCAAAACATCTTTTATTTGTGAACTT
57.117
25.926
0.00
0.00
32.29
2.66
3459
4461
9.919348
CCAAAACATCTTTTATTTGTGAACTTG
57.081
29.630
0.00
0.00
32.29
3.16
3617
4781
7.434897
GCTTGTTCTGATACACAAATGACAAAA
59.565
33.333
0.00
0.00
32.53
2.44
3791
5070
4.752101
ACAGTTGAACGGAAAGATGAGAAG
59.248
41.667
1.76
0.00
0.00
2.85
3903
5182
0.537143
AAGCGGTCATTGGTCAAGCA
60.537
50.000
0.00
0.00
0.00
3.91
3944
7197
8.044060
TCGGATAGAATTTTATCATGGCATTC
57.956
34.615
15.67
0.00
32.76
2.67
3981
7234
8.055181
ACTAAATGATGACAAAGTGTATCCCAT
58.945
33.333
0.00
0.00
0.00
4.00
4103
7356
5.650283
ACATCTTGGGGAAGAACCAAATTA
58.350
37.500
0.00
0.00
46.54
1.40
4173
7426
1.163554
GGCTGAGAAACAGGAAGCAG
58.836
55.000
0.00
0.00
45.82
4.24
4235
7621
1.346395
TCATACTTCGGCACAAGGTGT
59.654
47.619
0.00
0.00
35.75
4.16
4242
7628
0.240945
CGGCACAAGGTGTTGAATCC
59.759
55.000
0.00
0.00
37.10
3.01
4308
7694
6.388619
AGGGTTGTAGAACATTATCAAGGT
57.611
37.500
5.00
0.00
33.27
3.50
4447
7837
4.451900
TGAGAAACAAAACTCTCTGACCC
58.548
43.478
0.00
0.00
39.11
4.46
4475
7865
5.463154
AGCTACTCCCTCTGTCTCAATATT
58.537
41.667
0.00
0.00
0.00
1.28
4481
7871
8.560124
ACTCCCTCTGTCTCAATATTTAAGAT
57.440
34.615
1.64
0.00
0.00
2.40
4548
7939
2.422093
GCAGAGGGAGTATTTCCTTGGG
60.422
54.545
0.00
0.00
45.98
4.12
4662
8065
6.822667
TGTCATGCTCTAAACACATCAAAT
57.177
33.333
0.00
0.00
0.00
2.32
5204
8611
1.723608
TTTGTGTGGCAGTTGCTCCG
61.724
55.000
3.88
0.00
41.70
4.63
5237
8644
4.380023
CGGAAGTTTTGACAGTGTTTGGAA
60.380
41.667
0.00
0.00
0.00
3.53
5275
8682
8.239314
CAGCTTCTTTTTGTAATCTTGATAGCA
58.761
33.333
0.00
0.00
0.00
3.49
5310
8717
3.632333
ACTGATGTCTCGTATCCTTGGA
58.368
45.455
0.00
0.00
0.00
3.53
5319
8726
2.029918
TCGTATCCTTGGAGCGATGATG
60.030
50.000
12.62
0.00
0.00
3.07
5351
8758
0.955905
GTTTCGTTTTGCCTGGGCTA
59.044
50.000
13.05
2.16
42.51
3.93
5352
8759
1.338655
GTTTCGTTTTGCCTGGGCTAA
59.661
47.619
13.05
8.70
42.51
3.09
5353
8760
0.955905
TTCGTTTTGCCTGGGCTAAC
59.044
50.000
13.05
14.32
42.51
2.34
5354
8761
1.209127
CGTTTTGCCTGGGCTAACG
59.791
57.895
24.97
24.97
45.13
3.18
5355
8762
1.584495
GTTTTGCCTGGGCTAACGG
59.416
57.895
13.05
0.00
42.51
4.44
5356
8763
2.272447
TTTTGCCTGGGCTAACGGC
61.272
57.895
13.05
0.00
44.02
5.68
5453
8860
5.125367
AACCTGTTTACTCTTCAGGGTTT
57.875
39.130
13.72
0.00
45.61
3.27
5480
8887
4.202090
TGTCATCAGATGAGAATGGACTCG
60.202
45.833
13.78
0.00
40.53
4.18
5488
8895
1.590259
GAATGGACTCGAGCCTCGC
60.590
63.158
21.36
0.00
40.21
5.03
5517
8924
7.315890
CCGCTACAATAGAACATCATCATCTA
58.684
38.462
0.00
0.00
0.00
1.98
5519
8926
9.363763
CGCTACAATAGAACATCATCATCTAAT
57.636
33.333
0.00
0.00
0.00
1.73
5538
8947
7.027874
TCTAATCACCCCATAACTTTTCAGT
57.972
36.000
0.00
0.00
33.11
3.41
5568
8981
8.655651
TTTTAACTTTCAAACATGGATTCCAC
57.344
30.769
7.76
0.00
35.80
4.02
5815
10689
3.569701
GGACGGGTTCGATATTAGGTGTA
59.430
47.826
0.00
0.00
40.11
2.90
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
0.167251
GTCCAAATAACGCCCACACG
59.833
55.000
0.00
0.00
39.50
4.49
2
3
0.524414
GGTCCAAATAACGCCCACAC
59.476
55.000
0.00
0.00
0.00
3.82
3
4
0.609681
GGGTCCAAATAACGCCCACA
60.610
55.000
0.00
0.00
39.13
4.17
4
5
0.323087
AGGGTCCAAATAACGCCCAC
60.323
55.000
0.00
0.00
41.67
4.61
5
6
0.406361
AAGGGTCCAAATAACGCCCA
59.594
50.000
0.00
0.00
41.67
5.36
6
7
1.475280
GAAAGGGTCCAAATAACGCCC
59.525
52.381
0.00
0.00
39.60
6.13
7
8
2.164338
TGAAAGGGTCCAAATAACGCC
58.836
47.619
0.00
0.00
0.00
5.68
8
9
3.926821
TTGAAAGGGTCCAAATAACGC
57.073
42.857
0.00
0.00
0.00
4.84
9
10
7.371936
TGTATTTTGAAAGGGTCCAAATAACG
58.628
34.615
0.00
0.00
36.26
3.18
10
11
7.817478
CCTGTATTTTGAAAGGGTCCAAATAAC
59.183
37.037
0.00
0.00
36.26
1.89
11
12
7.730784
TCCTGTATTTTGAAAGGGTCCAAATAA
59.269
33.333
0.00
0.00
36.26
1.40
12
13
7.242359
TCCTGTATTTTGAAAGGGTCCAAATA
58.758
34.615
0.00
0.00
34.37
1.40
13
14
6.081356
TCCTGTATTTTGAAAGGGTCCAAAT
58.919
36.000
0.00
0.00
36.05
2.32
14
15
5.459505
TCCTGTATTTTGAAAGGGTCCAAA
58.540
37.500
0.00
0.00
0.00
3.28
15
16
5.068215
TCCTGTATTTTGAAAGGGTCCAA
57.932
39.130
0.00
0.00
0.00
3.53
16
17
4.733077
TCCTGTATTTTGAAAGGGTCCA
57.267
40.909
0.00
0.00
0.00
4.02
17
18
4.830600
TGTTCCTGTATTTTGAAAGGGTCC
59.169
41.667
0.00
0.00
0.00
4.46
18
19
6.208599
TCATGTTCCTGTATTTTGAAAGGGTC
59.791
38.462
0.00
0.00
0.00
4.46
19
20
6.074648
TCATGTTCCTGTATTTTGAAAGGGT
58.925
36.000
0.00
0.00
0.00
4.34
20
21
6.588719
TCATGTTCCTGTATTTTGAAAGGG
57.411
37.500
0.00
0.00
0.00
3.95
21
22
8.885494
TTTTCATGTTCCTGTATTTTGAAAGG
57.115
30.769
0.00
0.00
34.31
3.11
22
23
9.533253
ACTTTTCATGTTCCTGTATTTTGAAAG
57.467
29.630
0.00
0.00
34.31
2.62
32
33
3.821033
GCCTACACTTTTCATGTTCCTGT
59.179
43.478
0.00
0.00
0.00
4.00
47
48
4.752101
GGACATGACATTCTATGCCTACAC
59.248
45.833
0.00
0.00
0.00
2.90
170
174
9.601810
GGACCCAAATCCTATAAAAATCCTATT
57.398
33.333
0.00
0.00
35.68
1.73
392
397
2.595386
GCATTAAAGAAACCAGCCACG
58.405
47.619
0.00
0.00
0.00
4.94
394
399
1.067915
GCGCATTAAAGAAACCAGCCA
60.068
47.619
0.30
0.00
0.00
4.75
404
410
0.179140
ATGTTGCCGGCGCATTAAAG
60.179
50.000
24.78
0.00
46.67
1.85
513
519
1.600413
GGCACAAACTCGCAAAGAAGG
60.600
52.381
0.00
0.00
0.00
3.46
617
630
1.880027
GATCGGGAAGCAAAGTTGTGT
59.120
47.619
0.00
0.00
0.00
3.72
705
719
1.804151
CAATCAACGGTTGTGGTCGAT
59.196
47.619
19.47
3.00
0.00
3.59
719
733
0.817013
GGGCCTGCGAAATCAATCAA
59.183
50.000
0.84
0.00
0.00
2.57
720
734
1.375853
CGGGCCTGCGAAATCAATCA
61.376
55.000
0.84
0.00
0.00
2.57
721
735
1.356624
CGGGCCTGCGAAATCAATC
59.643
57.895
0.84
0.00
0.00
2.67
722
736
2.120909
CCGGGCCTGCGAAATCAAT
61.121
57.895
5.85
0.00
0.00
2.57
783
800
0.670546
CGTCCGACCACAGAAGCAAT
60.671
55.000
0.00
0.00
0.00
3.56
784
801
1.300620
CGTCCGACCACAGAAGCAA
60.301
57.895
0.00
0.00
0.00
3.91
947
1139
2.035626
GATGGGGTGGTGGTGGTG
59.964
66.667
0.00
0.00
0.00
4.17
948
1140
3.646715
CGATGGGGTGGTGGTGGT
61.647
66.667
0.00
0.00
0.00
4.16
949
1141
4.424711
CCGATGGGGTGGTGGTGG
62.425
72.222
0.00
0.00
0.00
4.61
950
1142
2.608970
GATCCGATGGGGTGGTGGTG
62.609
65.000
0.00
0.00
37.00
4.17
951
1143
2.286121
ATCCGATGGGGTGGTGGT
60.286
61.111
0.00
0.00
37.00
4.16
952
1144
2.510906
GATCCGATGGGGTGGTGG
59.489
66.667
0.00
0.00
37.00
4.61
1277
1474
0.322546
GGAACAAAGAGCGGGATGGT
60.323
55.000
0.00
0.00
0.00
3.55
1453
1660
3.105937
GCACAGAAACACGGAAAGAAAC
58.894
45.455
0.00
0.00
0.00
2.78
1586
2558
4.008330
CCATGGATGATCCTGAACTATGC
58.992
47.826
13.44
0.00
37.46
3.14
1595
2567
4.909695
TGTCTAATCACCATGGATGATCCT
59.090
41.667
21.47
11.70
35.72
3.24
1724
2701
7.838771
TGACTTGTGAACATGAATATCTGAG
57.161
36.000
0.00
0.00
0.00
3.35
1967
2960
9.959749
GTTGTTCTAATGAAACCTCAAATACAA
57.040
29.630
0.00
0.00
34.49
2.41
2025
3018
7.581213
TTCCTTTTCAGCAGATACTCAAAAA
57.419
32.000
0.00
0.00
0.00
1.94
2168
3161
7.888546
AGTACAAAAATAGCCATTACTGGTCTT
59.111
33.333
0.55
0.00
45.10
3.01
2215
3208
5.903810
AGGACCTAACTATTAAGAACGCAG
58.096
41.667
0.00
0.00
0.00
5.18
2219
3212
9.939802
TGAGAAAAGGACCTAACTATTAAGAAC
57.060
33.333
0.00
0.00
0.00
3.01
2239
3232
0.183492
AACAGCCACAGCCTGAGAAA
59.817
50.000
0.00
0.00
41.25
2.52
2384
3377
5.234543
GGTTTCAAGATACTTACGCATCCTC
59.765
44.000
0.00
0.00
0.00
3.71
2593
3586
6.882610
AACATACTGTTGATCTGCAGAAAA
57.117
33.333
22.50
15.43
39.45
2.29
2619
3614
4.202315
ACAAGTACAATAGTGTGCCAGACA
60.202
41.667
5.98
0.00
40.95
3.41
2778
3773
4.114073
TGTGCAAAGAAGTGAAAATGCTG
58.886
39.130
0.00
0.00
34.97
4.41
2833
3828
6.806249
CACAAGTGAAAGTAAAAAGACTTGCA
59.194
34.615
0.00
0.00
41.80
4.08
2834
3829
6.806739
ACACAAGTGAAAGTAAAAAGACTTGC
59.193
34.615
7.28
0.00
42.55
4.01
3062
4057
5.479375
ACTGACTGCCATCAAATTTCAGAAT
59.521
36.000
9.99
0.00
34.41
2.40
3091
4088
9.646522
ACTTATATAAGTCCCAAGCAATTCAAT
57.353
29.630
20.27
0.00
42.52
2.57
3300
4297
4.392445
CGGAGGGAGTATATCTTCTGTACG
59.608
50.000
0.00
0.00
0.00
3.67
3301
4298
5.315348
ACGGAGGGAGTATATCTTCTGTAC
58.685
45.833
0.00
0.00
32.73
2.90
3302
4299
5.579753
ACGGAGGGAGTATATCTTCTGTA
57.420
43.478
0.00
0.00
32.73
2.74
3303
4300
4.456662
ACGGAGGGAGTATATCTTCTGT
57.543
45.455
0.00
0.00
0.00
3.41
3304
4301
4.827835
TGAACGGAGGGAGTATATCTTCTG
59.172
45.833
0.00
0.00
0.00
3.02
3305
4302
4.828387
GTGAACGGAGGGAGTATATCTTCT
59.172
45.833
0.00
0.00
0.00
2.85
3306
4303
4.583489
TGTGAACGGAGGGAGTATATCTTC
59.417
45.833
0.00
0.00
0.00
2.87
3378
4380
9.301153
GAAATGAGTGAACAAACACACTAAAAT
57.699
29.630
0.00
0.00
45.54
1.82
3445
4447
8.792633
CAAATACTCCCTCAAGTTCACAAATAA
58.207
33.333
0.00
0.00
0.00
1.40
3458
4460
8.691797
GTTAATAATTTGCCAAATACTCCCTCA
58.308
33.333
2.54
0.00
0.00
3.86
3459
4461
8.691797
TGTTAATAATTTGCCAAATACTCCCTC
58.308
33.333
2.54
0.00
0.00
4.30
3508
4510
8.800972
CATGCAACTATCAATATTTGTTGTGAC
58.199
33.333
15.54
6.20
39.81
3.67
3617
4781
3.564225
CCTAGCAAAAAGAACGTTGTCCT
59.436
43.478
5.00
0.00
0.00
3.85
3791
5070
4.572389
TCAGCTCTCAACTTTTCAAGTGTC
59.428
41.667
0.00
0.00
41.91
3.67
3903
5182
9.838339
ATTCTATCCGAAGTAATGAACTCAATT
57.162
29.630
0.00
0.00
37.50
2.32
3944
7197
7.420184
TGTCATCATTTAGTACTGTTGTGTG
57.580
36.000
5.39
4.95
0.00
3.82
3981
7234
7.555195
AGATCATATTTCTGCACATGTTCAAGA
59.445
33.333
0.00
0.00
0.00
3.02
4103
7356
3.211865
CTCATAACCACTGCTGCATCAT
58.788
45.455
1.31
0.00
0.00
2.45
4235
7621
0.700564
AAGAGCTGGGCTGGATTCAA
59.299
50.000
0.00
0.00
39.88
2.69
4242
7628
3.491208
AGCATTAAGAGCTGGGCTG
57.509
52.632
0.00
0.00
39.88
4.85
4308
7694
0.251297
CACCATCACTTGCCCCAGAA
60.251
55.000
0.00
0.00
0.00
3.02
4437
7825
4.098807
GGAGTAGCTAAAAGGGTCAGAGAG
59.901
50.000
0.00
0.00
0.00
3.20
4438
7826
4.024670
GGAGTAGCTAAAAGGGTCAGAGA
58.975
47.826
0.00
0.00
0.00
3.10
4447
7837
4.707448
TGAGACAGAGGGAGTAGCTAAAAG
59.293
45.833
0.00
0.00
0.00
2.27
4518
7909
5.975988
AATACTCCCTCTGCCTCAAAATA
57.024
39.130
0.00
0.00
0.00
1.40
4548
7939
2.029838
AGGTCATGCGTCCATTCTTC
57.970
50.000
0.00
0.00
0.00
2.87
4662
8065
3.035363
TGAGTATTGCCCCATCGAGTTA
58.965
45.455
0.00
0.00
0.00
2.24
4770
8173
1.866015
ACTCCTGCACTGTAGCCATA
58.134
50.000
0.00
0.00
0.00
2.74
5204
8611
1.029681
AAAACTTCCGCACCTCCAAC
58.970
50.000
0.00
0.00
0.00
3.77
5211
8618
1.400494
ACACTGTCAAAACTTCCGCAC
59.600
47.619
0.00
0.00
0.00
5.34
5219
8626
7.387945
CGTAAATTTCCAAACACTGTCAAAAC
58.612
34.615
0.00
0.00
0.00
2.43
5237
8644
5.767816
AAAAGAAGCTGTGACCGTAAATT
57.232
34.783
0.00
0.00
0.00
1.82
5284
8691
3.937311
AGGATACGAGACATCAGTCAGCA
60.937
47.826
0.00
0.00
45.26
4.41
5310
8717
7.820331
AACTACAAGTTGGAGCATCATCGCT
62.820
44.000
15.41
0.00
40.28
4.93
5319
8726
4.547406
AAACGAAACTACAAGTTGGAGC
57.453
40.909
15.41
0.00
38.66
4.70
5322
8729
3.794564
GGCAAAACGAAACTACAAGTTGG
59.205
43.478
7.96
0.00
38.66
3.77
5351
8758
0.981943
ACTAACCCAGCTTAGCCGTT
59.018
50.000
0.00
3.93
0.00
4.44
5352
8759
0.249398
CACTAACCCAGCTTAGCCGT
59.751
55.000
0.00
0.00
0.00
5.68
5353
8760
0.462047
CCACTAACCCAGCTTAGCCG
60.462
60.000
0.00
0.00
0.00
5.52
5354
8761
0.107165
CCCACTAACCCAGCTTAGCC
60.107
60.000
0.00
0.00
0.00
3.93
5355
8762
0.618981
ACCCACTAACCCAGCTTAGC
59.381
55.000
0.00
0.00
0.00
3.09
5356
8763
2.039879
ACAACCCACTAACCCAGCTTAG
59.960
50.000
0.00
0.00
0.00
2.18
5453
8860
4.160252
TCCATTCTCATCTGATGACACGAA
59.840
41.667
16.06
17.04
35.06
3.85
5517
8924
6.994421
AAACTGAAAAGTTATGGGGTGATT
57.006
33.333
0.00
0.00
0.00
2.57
5519
8926
6.800072
AAAAACTGAAAAGTTATGGGGTGA
57.200
33.333
0.00
0.00
0.00
4.02
5562
8975
7.282901
CCAAATTCAAAGAAAACTTGGTGGAAT
59.717
33.333
0.00
0.00
0.00
3.01
5567
8980
7.120579
GGAAACCAAATTCAAAGAAAACTTGGT
59.879
33.333
13.82
13.82
45.27
3.67
5568
8981
7.471721
GGAAACCAAATTCAAAGAAAACTTGG
58.528
34.615
12.96
12.96
38.23
3.61
5655
9076
1.134907
CGGTGCCAATACGTCTAACCT
60.135
52.381
0.00
0.00
0.00
3.50
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.