AutoCloner

Multiple sequence alignment - TraesCS6D01G212400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G212400	chr6D	100.000	5908	0	0	1	5908	300893930	300888023	0.000000e+00	10911.0
1	TraesCS6D01G212400	chr6A	94.339	3904	134	30	2046	5908	416655857	416659714	0.000000e+00	5904.0
2	TraesCS6D01G212400	chr6A	91.364	1320	44	30	403	1681	416653903	416655193	0.000000e+00	1742.0
3	TraesCS6D01G212400	chr6A	89.751	361	18	6	2	347	416653535	416653891	1.510000e-120	444.0
4	TraesCS6D01G212400	chr6A	92.908	282	14	4	1742	2017	416655577	416655858	7.130000e-109	405.0
5	TraesCS6D01G212400	chr6A	93.443	61	4	0	1686	1746	416655221	416655281	2.270000e-14	91.6
6	TraesCS6D01G212400	chr6B	91.062	2965	108	52	1	2866	465680273	465677367	0.000000e+00	3862.0
7	TraesCS6D01G212400	chr6B	97.155	2109	47	2	2878	4985	465677384	465675288	0.000000e+00	3550.0
8	TraesCS6D01G212400	chr6B	81.585	1754	315	8	3083	4832	465684951	465683202	0.000000e+00	1443.0
9	TraesCS6D01G212400	chr6B	94.867	487	12	3	5017	5503	465675290	465674817	0.000000e+00	749.0
10	TraesCS6D01G212400	chr6B	93.733	367	11	2	5486	5852	465674800	465674446	1.870000e-149	540.0
11	TraesCS6D01G212400	chr6B	90.698	86	3	3	157	240	465680035	465679953	6.260000e-20	110.0
12	TraesCS6D01G212400	chr2A	82.386	1760	298	10	3083	4836	624458796	624460549	0.000000e+00	1522.0
13	TraesCS6D01G212400	chr2A	81.886	403	64	6	1069	1468	624394333	624394729	1.230000e-86	331.0
14	TraesCS6D01G212400	chr2A	81.572	407	58	13	1069	1468	624359568	624359964	2.660000e-83	320.0
15	TraesCS6D01G212400	chr2A	81.390	403	66	6	1069	1468	624458285	624458681	2.660000e-83	320.0
16	TraesCS6D01G212400	chr1B	82.082	1758	299	14	3083	4832	28375292	28373543	0.000000e+00	1487.0
17	TraesCS6D01G212400	chr1B	81.628	1769	314	11	3087	4849	148415904	148414141	0.000000e+00	1456.0
18	TraesCS6D01G212400	chr2D	81.813	1754	303	13	3085	4830	156707847	156709592	0.000000e+00	1458.0
19	TraesCS6D01G212400	chr2D	81.728	405	65	6	1067	1468	481961487	481961885	4.410000e-86	329.0
20	TraesCS6D01G212400	chr2D	81.818	407	57	13	1069	1468	481599622	481600018	5.710000e-85	326.0
21	TraesCS6D01G212400	chr2D	81.327	407	63	10	1067	1468	481688639	481689037	9.550000e-83	318.0
22	TraesCS6D01G212400	chr1A	81.597	1766	301	20	3083	4836	20931982	20930229	0.000000e+00	1439.0
23	TraesCS6D01G212400	chr4A	81.500	1773	305	20	3076	4836	675285185	675283424	0.000000e+00	1435.0
24	TraesCS6D01G212400	chr2B	81.436	404	64	8	1069	1468	564920828	564921224	2.660000e-83	320.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G212400	chr6D	300888023	300893930	5907	True	10911.00	10911	100.000000	1	5908	1	chr6D.!!$R1	5907
1	TraesCS6D01G212400	chr6A	416653535	416659714	6179	False	1717.32	5904	92.361000	2	5908	5	chr6A.!!$F1	5906
2	TraesCS6D01G212400	chr6B	465674446	465684951	10505	True	1709.00	3862	91.516667	1	5852	6	chr6B.!!$R1	5851
3	TraesCS6D01G212400	chr2A	624458285	624460549	2264	False	921.00	1522	81.888000	1069	4836	2	chr2A.!!$F3	3767
4	TraesCS6D01G212400	chr1B	28373543	28375292	1749	True	1487.00	1487	82.082000	3083	4832	1	chr1B.!!$R1	1749
5	TraesCS6D01G212400	chr1B	148414141	148415904	1763	True	1456.00	1456	81.628000	3087	4849	1	chr1B.!!$R2	1762
6	TraesCS6D01G212400	chr2D	156707847	156709592	1745	False	1458.00	1458	81.813000	3085	4830	1	chr2D.!!$F1	1745
7	TraesCS6D01G212400	chr1A	20930229	20931982	1753	True	1439.00	1439	81.597000	3083	4836	1	chr1A.!!$R1	1753
8	TraesCS6D01G212400	chr4A	675283424	675285185	1761	True	1435.00	1435	81.500000	3076	4836	1	chr4A.!!$R1	1760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
361	5057	0.591170	CGCTTCATCCCGTTGTGTTT	59.409	50.0	0.00	0.00	2.83	F
1494	6326	0.389025	GGTTGCAGACCCAAAACCTG	59.611	55.0	6.76	43.06	4.00	F
1682	6516	0.468400	TTTGGGGTTTCGGGGAGTTG	60.468	55.0	0.00	0.00	3.16	F
2534	7749	0.673644	GTCGGGTGAGTCATGGTTGG	60.674	60.0	0.00	0.00	3.77	F
2763	7985	0.734253	AAGACGCGCACATCTGACTC	60.734	55.0	5.73	0.00	3.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
2285	7488	0.030235	GGTCGCCGAACAAAAAGCTT	59.970	50.000	3.74	R
2626	7842	0.170561	CTCCCACGTTCTACTGGACG	59.829	60.000	4.79	R
2634	7850	0.393077	CTTGACCACTCCCACGTTCT	59.607	55.000	3.01	R
4252	9479	1.266178	TCTCCTCAATGTGGCGAAGA	58.734	50.000	2.87	R
5079	10308	8.650143	AACAAAGGAGATAACATGGTGTATTT	57.350	30.769	1.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	4757	1.454572	AAATGCGGCAGCTTGACACA	61.455	50.000	10.92	0.00	45.42	3.72
142	4829	2.484662	GCAACCATGCGATGCGAA	59.515	55.556	0.00	0.00	43.83	4.70
305	5001	2.673833	GTCTTGGGTCTGTACTTGACG	58.326	52.381	11.45	0.00	35.45	4.35
319	5015	2.294791	ACTTGACGGTTCAGACTCTGAG	59.705	50.000	8.76	2.45	41.75	3.35
361	5057	0.591170	CGCTTCATCCCGTTGTGTTT	59.409	50.000	0.00	0.00	0.00	2.83
374	5070	3.066203	CGTTGTGTTTAGCCCTTTTCAGT	59.934	43.478	0.00	0.00	0.00	3.41
465	5161	0.745845	TGTAGGGTAGAGACGGACGC	60.746	60.000	0.00	0.00	0.00	5.19
918	5681	4.464069	TCTCCAAGAAGAGCTTAGCTTC	57.536	45.455	8.58	2.63	39.88	3.86
976	5747	5.861725	TCCATCTATCTATAAACGTACGCG	58.138	41.667	16.72	3.53	44.93	6.01
981	5752	9.481800	CATCTATCTATAAACGTACGCGATTAA	57.518	33.333	15.93	0.00	38.49	1.40
1004	5775	1.382695	TAGCAGTGGTAGCTCCCCC	60.383	63.158	0.00	0.00	42.32	5.40
1025	5796	1.726791	CACATCTGTCGTGCTTGTACC	59.273	52.381	0.00	0.00	0.00	3.34
1026	5797	1.618837	ACATCTGTCGTGCTTGTACCT	59.381	47.619	0.00	0.00	0.00	3.08
1494	6326	0.389025	GGTTGCAGACCCAAAACCTG	59.611	55.000	6.76	0.00	43.06	4.00
1495	6327	1.111277	GTTGCAGACCCAAAACCTGT	58.889	50.000	0.00	0.00	0.00	4.00
1562	6395	7.011109	AGCCATTAAGACGTGTTAATATGACAC	59.989	37.037	25.03	13.49	42.98	3.67
1580	6413	5.168569	TGACACTAAGGAGCAGATTAAACG	58.831	41.667	0.00	0.00	0.00	3.60
1662	6496	4.202346	CCAAGCCCAAAAGGATTCTTTTCA	60.202	41.667	8.88	0.00	41.74	2.69
1682	6516	0.468400	TTTGGGGTTTCGGGGAGTTG	60.468	55.000	0.00	0.00	0.00	3.16
1734	6594	6.935208	ACTACCCATCAACTAACTGAAACTTC	59.065	38.462	0.00	0.00	0.00	3.01
1747	6607	7.689446	AACTGAAACTTCTCCTAAATTAGGC	57.311	36.000	14.05	0.00	45.82	3.93
1835	6998	5.695851	AATTTACTTTGTGCAGACCTCAG	57.304	39.130	0.00	0.00	0.00	3.35
1930	7122	1.079543	AGCCAAGTAGCACGAGCAG	60.080	57.895	7.77	0.00	45.49	4.24
1993	7190	6.201226	TCTAGAGCACTTGACACATCTTAG	57.799	41.667	0.00	0.00	0.00	2.18
2169	7371	1.600107	TGGTCCACCATTACTCGCC	59.400	57.895	0.00	0.00	42.01	5.54
2189	7391	2.271800	CTATCTCTTTTCGCGGCAAGT	58.728	47.619	6.13	0.00	0.00	3.16
2191	7393	2.157834	TCTCTTTTCGCGGCAAGTAA	57.842	45.000	6.13	0.00	0.00	2.24
2282	7485	1.952635	ACCGGAGCAACGAACGAAC	60.953	57.895	9.46	0.00	35.47	3.95
2283	7486	2.464189	CGGAGCAACGAACGAACG	59.536	61.111	0.14	0.00	39.31	3.95
2284	7487	2.012414	CGGAGCAACGAACGAACGA	61.012	57.895	11.97	0.00	37.03	3.85
2285	7488	1.542272	CGGAGCAACGAACGAACGAA	61.542	55.000	11.97	0.00	37.03	3.85
2358	7573	1.020861	GTGTCTGTCATGCATGCGGA	61.021	55.000	22.25	21.71	0.00	5.54
2359	7574	1.020861	TGTCTGTCATGCATGCGGAC	61.021	55.000	33.26	33.26	38.99	4.79
2409	7624	7.513196	GCGTAGTTTTATCAATCACACGTAGAG	60.513	40.741	0.00	0.00	0.00	2.43
2436	7651	4.410400	GGGAGTGGCTGGTTCGGG	62.410	72.222	0.00	0.00	0.00	5.14
2534	7749	0.673644	GTCGGGTGAGTCATGGTTGG	60.674	60.000	0.00	0.00	0.00	3.77
2539	7754	1.168714	GTGAGTCATGGTTGGGAAGC	58.831	55.000	0.00	0.00	0.00	3.86
2555	7771	4.141390	TGGGAAGCTTCTCAAGACTTTTCT	60.141	41.667	26.78	0.00	34.05	2.52
2586	7802	3.891366	CTCCAAAGTCCAAACCATGTCTT	59.109	43.478	0.00	0.00	0.00	3.01
2626	7842	9.710979	TTATGCACGCTAGTTGAATTTTAATAC	57.289	29.630	0.00	0.00	0.00	1.89
2633	7849	7.201496	CGCTAGTTGAATTTTAATACGTCCAGT	60.201	37.037	0.00	0.00	0.00	4.00
2634	7850	9.090692	GCTAGTTGAATTTTAATACGTCCAGTA	57.909	33.333	0.00	0.00	40.03	2.74
2726	7948	2.579873	GACGGCCACTCTGTATACCTA	58.420	52.381	2.24	0.00	33.57	3.08
2763	7985	0.734253	AAGACGCGCACATCTGACTC	60.734	55.000	5.73	0.00	0.00	3.36
2788	8010	2.757099	GCACCTTGCCATGGGGAG	60.757	66.667	15.13	6.23	37.42	4.30
2856	8080	6.540438	ACAATAACTTATTCCAGACTCGGA	57.460	37.500	0.00	0.00	0.00	4.55
2895	8122	2.547218	GGAAGACTCGGCACAACACTTA	60.547	50.000	0.00	0.00	0.00	2.24
2902	8129	1.318576	GGCACAACACTTAACTGCCT	58.681	50.000	0.00	0.00	43.52	4.75
2946	8173	1.263217	CACGACGGGAAAAAGACAAGG	59.737	52.381	0.00	0.00	0.00	3.61
2959	8186	4.749245	AAGACAAGGAACAAGCATAACG	57.251	40.909	0.00	0.00	0.00	3.18
3007	8234	3.726607	CCATTTTTGTTACCAGCAGCAA	58.273	40.909	0.00	0.00	0.00	3.91
3325	8552	1.523938	GTCCTACATTGCCGGCCTC	60.524	63.158	26.77	0.00	0.00	4.70
4252	9479	1.380785	CCTGTGCCAGGCCATTGAT	60.381	57.895	9.64	0.00	45.13	2.57
5099	10328	8.739972	GTTTCAAAATACACCATGTTATCTCCT	58.260	33.333	0.00	0.00	0.00	3.69
5100	10329	8.877864	TTCAAAATACACCATGTTATCTCCTT	57.122	30.769	0.00	0.00	0.00	3.36
5101	10330	8.877864	TCAAAATACACCATGTTATCTCCTTT	57.122	30.769	0.00	0.00	0.00	3.11
5102	10331	8.739039	TCAAAATACACCATGTTATCTCCTTTG	58.261	33.333	0.00	0.00	0.00	2.77
5106	10335	6.575162	ACACCATGTTATCTCCTTTGTTTC	57.425	37.500	0.00	0.00	0.00	2.78
5109	10338	7.942341	ACACCATGTTATCTCCTTTGTTTCTTA	59.058	33.333	0.00	0.00	0.00	2.10
5110	10339	8.792633	CACCATGTTATCTCCTTTGTTTCTTAA	58.207	33.333	0.00	0.00	0.00	1.85
5184	10413	2.232941	TCCTTGATCTTGTCACGTACCC	59.767	50.000	0.00	0.00	36.32	3.69
5187	10416	4.315803	CTTGATCTTGTCACGTACCCTTT	58.684	43.478	0.00	0.00	36.32	3.11
5209	10438	0.389166	GAACTGTCGGTGCCTCTCTG	60.389	60.000	0.00	0.00	0.00	3.35
5210	10439	1.115930	AACTGTCGGTGCCTCTCTGT	61.116	55.000	0.00	0.00	0.00	3.41
5211	10440	1.214062	CTGTCGGTGCCTCTCTGTC	59.786	63.158	0.00	0.00	0.00	3.51
5212	10441	2.219325	CTGTCGGTGCCTCTCTGTCC	62.219	65.000	0.00	0.00	0.00	4.02
5213	10442	2.680352	TCGGTGCCTCTCTGTCCC	60.680	66.667	0.00	0.00	0.00	4.46
5214	10443	3.775654	CGGTGCCTCTCTGTCCCC	61.776	72.222	0.00	0.00	0.00	4.81
5215	10444	3.403558	GGTGCCTCTCTGTCCCCC	61.404	72.222	0.00	0.00	0.00	5.40
5216	10445	2.607750	GTGCCTCTCTGTCCCCCA	60.608	66.667	0.00	0.00	0.00	4.96
5606	10896	2.734606	TGAATTAGTTCAGGCGTCAACG	59.265	45.455	0.00	0.00	39.36	4.10
5769	11061	0.726827	TGCTACGCATGCTAAACAGC	59.273	50.000	17.13	15.73	31.71	4.40
5789	11081	3.196901	AGCCAAATGCAATCACATCACAT	59.803	39.130	0.00	0.00	44.83	3.21
5891	11183	4.794278	TGAACGGTAGAGCTTGTCATTA	57.206	40.909	0.00	0.00	0.00	1.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	4757	5.598769	AGTAGTACTGAAAACGAAGCTGTT	58.401	37.500	5.39	0.00	0.00	3.16
142	4829	1.463674	CAAATCGGGCAGTTAGGCTT	58.536	50.000	0.00	0.00	43.56	4.35
305	5001	2.036475	TGCAGTTCTCAGAGTCTGAACC	59.964	50.000	22.83	13.34	40.18	3.62
319	5015	3.186119	CGGATCTTTCTCTCTGCAGTTC	58.814	50.000	14.67	0.00	0.00	3.01
361	5057	3.957288	GCCTGACTGAAAAGGGCTA	57.043	52.632	0.00	0.00	39.68	3.93
374	5070	2.558286	GCTGCAGTGCAAAGCCTGA	61.558	57.895	20.22	0.00	38.41	3.86
918	5681	2.358737	AGCTTGAGGCGAAACCGG	60.359	61.111	0.00	0.00	46.52	5.28
976	5747	6.394025	AGCTACCACTGCTAGTACTTAATC	57.606	41.667	0.00	0.00	39.21	1.75
981	5752	2.657143	GGAGCTACCACTGCTAGTACT	58.343	52.381	0.00	0.00	41.30	2.73
1004	5775	1.726791	GTACAAGCACGACAGATGTGG	59.273	52.381	0.00	0.00	37.80	4.17
1025	5796	4.301628	GAACAAAAACAATGCAGGGAGAG	58.698	43.478	0.00	0.00	0.00	3.20
1026	5797	3.069443	GGAACAAAAACAATGCAGGGAGA	59.931	43.478	0.00	0.00	0.00	3.71
1145	5919	1.228154	GGCGGTCTTCACCCAGTTT	60.228	57.895	0.00	0.00	40.01	2.66
1534	6367	6.419710	TCATATTAACACGTCTTAATGGCTCG	59.580	38.462	16.28	3.69	30.53	5.03
1562	6395	7.039882	TCTAAACCGTTTAATCTGCTCCTTAG	58.960	38.462	5.27	0.00	0.00	2.18
1580	6413	1.268743	GCATCCAGCGCAATCTAAACC	60.269	52.381	11.47	0.00	0.00	3.27
1605	6438	1.210155	GACGAAACAGGGCACATGC	59.790	57.895	0.00	0.00	41.14	4.06
1662	6496	0.485543	AACTCCCCGAAACCCCAAAT	59.514	50.000	0.00	0.00	0.00	2.32
1682	6516	3.492137	CCACCAACGACCTAGCTAATACC	60.492	52.174	0.00	0.00	0.00	2.73
1864	7056	5.103000	GTGATCGTGTTGCTACTTCAGTAT	58.897	41.667	0.00	0.00	0.00	2.12
1930	7122	3.340789	GGTGCAGGTTCACCGAAC	58.659	61.111	0.00	0.00	45.95	3.95
2169	7371	2.271800	ACTTGCCGCGAAAAGAGATAG	58.728	47.619	22.33	3.72	0.00	2.08
2189	7391	7.895429	AGGGAATGATGGTTGATCTTCTTTTTA	59.105	33.333	0.00	0.00	31.55	1.52
2191	7393	6.259123	AGGGAATGATGGTTGATCTTCTTTT	58.741	36.000	0.00	0.00	31.55	2.27
2282	7485	0.770008	CGCCGAACAAAAAGCTTTCG	59.230	50.000	13.10	11.26	41.40	3.46
2283	7486	1.779157	GTCGCCGAACAAAAAGCTTTC	59.221	47.619	13.10	0.00	0.00	2.62
2284	7487	1.535226	GGTCGCCGAACAAAAAGCTTT	60.535	47.619	5.69	5.69	0.00	3.51
2285	7488	0.030235	GGTCGCCGAACAAAAAGCTT	59.970	50.000	0.00	0.00	0.00	3.74
2409	7624	4.016706	CCACTCCCACCCACGTCC	62.017	72.222	0.00	0.00	0.00	4.79
2534	7749	6.459923	TCTAGAAAAGTCTTGAGAAGCTTCC	58.540	40.000	22.81	14.41	35.12	3.46
2539	7754	8.257306	AGCCTTATCTAGAAAAGTCTTGAGAAG	58.743	37.037	12.55	12.55	46.05	2.85
2555	7771	5.497474	GTTTGGACTTTGGAGCCTTATCTA	58.503	41.667	0.00	0.00	0.00	1.98
2626	7842	0.170561	CTCCCACGTTCTACTGGACG	59.829	60.000	0.00	0.00	0.00	4.79
2633	7849	1.616865	CTTGACCACTCCCACGTTCTA	59.383	52.381	0.00	0.00	0.00	2.10
2634	7850	0.393077	CTTGACCACTCCCACGTTCT	59.607	55.000	0.00	0.00	0.00	3.01
2788	8010	3.308438	AAATTGTTGCTCAGTCCATGC	57.692	42.857	0.00	0.00	0.00	4.06
2871	8098	0.534203	GTTGTGCCGAGTCTTCCCAA	60.534	55.000	0.00	0.00	0.00	4.12
2872	8099	1.070786	GTTGTGCCGAGTCTTCCCA	59.929	57.895	0.00	0.00	0.00	4.37
2946	8173	6.120812	GTCGTATGATTCGTTATGCTTGTTC	58.879	40.000	0.00	0.00	0.00	3.18
3007	8234	2.862140	GCACTTGGCGCAAAACTTATGT	60.862	45.455	10.83	0.00	0.00	2.29
3223	8450	2.019249	GCATTGAGCAGCTTGGTGATA	58.981	47.619	0.00	0.00	44.79	2.15
3325	8552	2.100631	GTTCTGTCGGCCGGTGATG	61.101	63.158	27.83	11.51	0.00	3.07
3652	8879	3.523157	TCATGTATGAGCTTCCCTCCAAA	59.477	43.478	0.00	0.00	39.98	3.28
4252	9479	1.266178	TCTCCTCAATGTGGCGAAGA	58.734	50.000	0.00	0.00	0.00	2.87
5079	10308	8.650143	AACAAAGGAGATAACATGGTGTATTT	57.350	30.769	0.00	0.00	0.00	1.40
5096	10325	9.974980	GTCCAACATTAATTAAGAAACAAAGGA	57.025	29.630	3.94	1.15	0.00	3.36
5100	10329	9.743057	CAGTGTCCAACATTAATTAAGAAACAA	57.257	29.630	3.94	0.00	0.00	2.83
5101	10330	8.356657	CCAGTGTCCAACATTAATTAAGAAACA	58.643	33.333	3.94	0.53	0.00	2.83
5102	10331	7.328493	GCCAGTGTCCAACATTAATTAAGAAAC	59.672	37.037	3.94	1.08	0.00	2.78
5106	10335	6.071952	ACTGCCAGTGTCCAACATTAATTAAG	60.072	38.462	0.00	0.00	0.00	1.85
5109	10338	4.151883	ACTGCCAGTGTCCAACATTAATT	58.848	39.130	0.00	0.00	0.00	1.40
5110	10339	3.766545	ACTGCCAGTGTCCAACATTAAT	58.233	40.909	0.00	0.00	0.00	1.40
5117	10346	1.133945	TGCTAAACTGCCAGTGTCCAA	60.134	47.619	0.00	0.00	0.00	3.53
5209	10438	1.003233	GTCTCTTGCACTGGGGGAC	60.003	63.158	0.00	0.00	0.00	4.46
5210	10439	2.583441	CGTCTCTTGCACTGGGGGA	61.583	63.158	0.00	0.00	0.00	4.81
5211	10440	2.046892	CGTCTCTTGCACTGGGGG	60.047	66.667	0.00	0.00	0.00	5.40
5212	10441	1.669115	CACGTCTCTTGCACTGGGG	60.669	63.158	0.00	0.00	0.00	4.96
5213	10442	2.320587	GCACGTCTCTTGCACTGGG	61.321	63.158	0.00	0.00	39.93	4.45
5214	10443	2.320587	GGCACGTCTCTTGCACTGG	61.321	63.158	0.00	0.00	42.12	4.00
5215	10444	2.320587	GGGCACGTCTCTTGCACTG	61.321	63.158	0.00	0.00	40.48	3.66
5216	10445	2.031163	GGGCACGTCTCTTGCACT	59.969	61.111	0.00	0.00	40.48	4.40
5279	10516	4.715297	ACCTAGGATAGTTGTTCAACGGAT	59.285	41.667	17.98	7.64	36.82	4.18
5448	10704	4.202367	CCAGGTAGGAGTGTTGTCTTTTCT	60.202	45.833	0.00	0.00	41.22	2.52
5606	10896	2.577225	GTGCAAACGAACAAGGCAC	58.423	52.632	0.00	0.00	46.53	5.01
5719	11011	1.301293	GCAAGCAAGAGGGCCTACT	59.699	57.895	5.73	2.33	0.00	2.57
5722	11014	2.035312	CTGCAAGCAAGAGGGCCT	59.965	61.111	5.25	5.25	0.00	5.19
5769	11061	4.116961	GGATGTGATGTGATTGCATTTGG	58.883	43.478	0.00	0.00	0.00	3.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.