Multiple sequence alignment - TraesCS6D01G211700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G211700 chr6D 100.000 6799 0 0 1 6799 299049257 299056055 0.000000e+00 12556
1 TraesCS6D01G211700 chr6B 95.656 3522 104 21 1431 4927 462129025 462132522 0.000000e+00 5611
2 TraesCS6D01G211700 chr6B 89.262 1043 49 27 312 1328 462127977 462128982 0.000000e+00 1247
3 TraesCS6D01G211700 chr6B 82.736 1089 107 41 5047 6098 462132724 462133768 0.000000e+00 894
4 TraesCS6D01G211700 chr6B 95.269 465 16 2 6336 6799 462134096 462134555 0.000000e+00 732
5 TraesCS6D01G211700 chr6B 82.993 294 25 9 6085 6355 462133790 462134081 6.810000e-60 243
6 TraesCS6D01G211700 chr6B 85.217 230 6 14 1 217 462126209 462126423 1.920000e-50 211
7 TraesCS6D01G211700 chr6B 93.056 72 4 1 207 278 462127912 462127982 3.350000e-18 104
8 TraesCS6D01G211700 chr6A 94.936 1244 50 4 2734 3976 420414139 420412908 0.000000e+00 1936
9 TraesCS6D01G211700 chr6A 89.669 1452 68 36 1 1433 420417116 420415728 0.000000e+00 1775
10 TraesCS6D01G211700 chr6A 93.743 959 53 3 3973 4927 420412866 420411911 0.000000e+00 1432
11 TraesCS6D01G211700 chr6A 97.716 613 14 0 6187 6799 420410899 420410287 0.000000e+00 1055
12 TraesCS6D01G211700 chr6A 92.185 691 40 8 1813 2490 420414950 420414261 0.000000e+00 965
13 TraesCS6D01G211700 chr6A 93.778 450 24 3 5616 6063 420411346 420410899 0.000000e+00 673
14 TraesCS6D01G211700 chr6A 84.360 422 52 8 4961 5373 420411920 420411504 1.060000e-107 401
15 TraesCS6D01G211700 chr6A 93.750 128 5 2 5498 5624 420411499 420411374 9.000000e-44 189
16 TraesCS6D01G211700 chr5B 91.321 265 21 2 2491 2754 398078639 398078376 1.800000e-95 361
17 TraesCS6D01G211700 chr5A 90.977 266 19 5 2491 2754 439870738 439870476 3.020000e-93 353
18 TraesCS6D01G211700 chr4B 90.514 253 22 2 2505 2755 650731591 650731843 3.930000e-87 333
19 TraesCS6D01G211700 chr3A 88.302 265 26 3 2494 2753 12975942 12975678 5.120000e-81 313
20 TraesCS6D01G211700 chr4D 88.933 253 22 3 2504 2754 504189965 504190213 2.380000e-79 307
21 TraesCS6D01G211700 chr7D 88.048 251 29 1 2493 2742 57880419 57880669 5.160000e-76 296
22 TraesCS6D01G211700 chrUn 86.466 266 32 3 2492 2753 265863238 265863503 8.630000e-74 289
23 TraesCS6D01G211700 chrUn 86.090 266 33 3 2492 2753 265872238 265872503 4.010000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G211700 chr6D 299049257 299056055 6798 False 12556.000000 12556 100.000000 1 6799 1 chr6D.!!$F1 6798
1 TraesCS6D01G211700 chr6B 462126209 462134555 8346 False 1291.714286 5611 89.169857 1 6799 7 chr6B.!!$F1 6798
2 TraesCS6D01G211700 chr6A 420410287 420417116 6829 True 1053.250000 1936 92.517125 1 6799 8 chr6A.!!$R1 6798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.030504 TAACGGCGTCGACACAAAGA 59.969 50.000 20.03 0.0 40.11 2.52 F
775 2337 0.106469 TCCCCGTCCTCATCTCTCAG 60.106 60.000 0.00 0.0 0.00 3.35 F
1381 2943 0.026285 CCTCTTTTAACGCGGCATCG 59.974 55.000 12.47 0.0 39.81 3.84 F
1617 3348 1.410004 CTTAGGGTATCCTCCACGCA 58.590 55.000 0.00 0.0 43.66 5.24 F
2255 4235 2.743664 GGGAAAAGTGCATGAAATTGCC 59.256 45.455 0.00 0.0 42.06 4.52 F
3236 5241 2.479566 TCCTGCTGTCAATTGGTCTC 57.520 50.000 5.42 0.0 0.00 3.36 F
4843 6895 0.249826 CAAACACCCCATGCCAACAC 60.250 55.000 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 2918 2.223044 GCCGCGTTAAAAGAGGAATCAG 60.223 50.000 4.92 0.00 0.00 2.90 R
2273 4253 0.178964 CAACCTCCAAGGGGCAAGAA 60.179 55.000 0.00 0.00 40.58 2.52 R
2308 4288 0.554305 AATGATGATGCCAGGCTCCA 59.446 50.000 14.15 10.86 0.00 3.86 R
3075 5080 2.825861 AACGATGTTGTAGTTCCGGT 57.174 45.000 0.00 0.00 0.00 5.28 R
3937 5942 4.851558 GCAAGACGGAATCATAACACAAAC 59.148 41.667 0.00 0.00 0.00 2.93 R
4930 6985 0.035820 TCCATACGACCCCAAACAGC 60.036 55.000 0.00 0.00 0.00 4.40 R
6108 8401 0.251653 AGGAACCTACGCTCCTGACA 60.252 55.000 0.00 0.00 40.70 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.014564 CGGGAACAGGAGCGAAACTC 61.015 60.000 0.00 0.00 45.45 3.01
47 48 5.612709 CGAAACTCGAAACTTGTTCTGATCC 60.613 44.000 0.00 0.00 43.74 3.36
97 98 1.500108 ATTAACGGCGTCGACACAAA 58.500 45.000 20.03 2.54 40.11 2.83
98 99 0.854062 TTAACGGCGTCGACACAAAG 59.146 50.000 20.03 4.00 40.11 2.77
99 100 0.030504 TAACGGCGTCGACACAAAGA 59.969 50.000 20.03 0.00 40.11 2.52
100 101 1.213094 AACGGCGTCGACACAAAGAG 61.213 55.000 20.03 0.00 40.11 2.85
101 102 1.371267 CGGCGTCGACACAAAGAGA 60.371 57.895 17.16 0.00 39.00 3.10
102 103 0.937699 CGGCGTCGACACAAAGAGAA 60.938 55.000 17.16 0.00 39.00 2.87
103 104 0.784778 GGCGTCGACACAAAGAGAAG 59.215 55.000 17.16 0.00 0.00 2.85
104 105 1.602165 GGCGTCGACACAAAGAGAAGA 60.602 52.381 17.16 0.00 0.00 2.87
105 106 1.716581 GCGTCGACACAAAGAGAAGAG 59.283 52.381 17.16 0.00 0.00 2.85
106 107 2.604855 GCGTCGACACAAAGAGAAGAGA 60.605 50.000 17.16 0.00 0.00 3.10
107 108 3.629058 CGTCGACACAAAGAGAAGAGAA 58.371 45.455 17.16 0.00 0.00 2.87
108 109 3.666334 CGTCGACACAAAGAGAAGAGAAG 59.334 47.826 17.16 0.00 0.00 2.85
109 110 4.554919 CGTCGACACAAAGAGAAGAGAAGA 60.555 45.833 17.16 0.00 0.00 2.87
110 111 4.915085 GTCGACACAAAGAGAAGAGAAGAG 59.085 45.833 11.55 0.00 0.00 2.85
111 112 4.822350 TCGACACAAAGAGAAGAGAAGAGA 59.178 41.667 0.00 0.00 0.00 3.10
112 113 5.299531 TCGACACAAAGAGAAGAGAAGAGAA 59.700 40.000 0.00 0.00 0.00 2.87
125 126 6.780457 AGAGAAGAGAAGAGAAGGAATGAG 57.220 41.667 0.00 0.00 0.00 2.90
134 144 1.625818 AGAAGGAATGAGCCGTGTCTT 59.374 47.619 0.00 0.00 0.00 3.01
138 155 1.464997 GGAATGAGCCGTGTCTTTGAC 59.535 52.381 0.00 0.00 0.00 3.18
141 158 0.464036 TGAGCCGTGTCTTTGACTGT 59.536 50.000 0.00 0.00 33.15 3.55
200 217 1.513102 CATTGAACGAACGACGCATG 58.487 50.000 0.14 0.00 46.94 4.06
202 219 0.876777 TTGAACGAACGACGCATGGT 60.877 50.000 0.14 0.00 46.94 3.55
203 220 1.129809 GAACGAACGACGCATGGTG 59.870 57.895 0.14 0.00 46.94 4.17
214 1736 2.747460 CATGGTGCACACGAGGGG 60.747 66.667 20.43 0.00 0.00 4.79
280 1802 0.896479 AAGTGCTCCACATGCATGCA 60.896 50.000 26.53 25.04 42.69 3.96
281 1803 1.153901 GTGCTCCACATGCATGCAC 60.154 57.895 25.37 22.52 45.23 4.57
282 1804 2.101575 GCTCCACATGCATGCACG 59.898 61.111 25.37 19.13 0.00 5.34
283 1805 2.101575 CTCCACATGCATGCACGC 59.898 61.111 25.37 0.00 0.00 5.34
285 1807 2.505337 CCACATGCATGCACGCAC 60.505 61.111 25.37 0.00 46.56 5.34
386 1918 2.325082 CGGCCGGTGAAAAGTCCAG 61.325 63.158 20.10 0.00 0.00 3.86
414 1949 3.354397 CCTCGAAATAGCAAAATCACGC 58.646 45.455 0.00 0.00 0.00 5.34
775 2337 0.106469 TCCCCGTCCTCATCTCTCAG 60.106 60.000 0.00 0.00 0.00 3.35
778 2340 1.409521 CCCGTCCTCATCTCTCAGTCT 60.410 57.143 0.00 0.00 0.00 3.24
821 2383 1.783031 GCTGCCATCAAGATCCAGCG 61.783 60.000 13.24 0.00 39.39 5.18
829 2391 3.624326 TCAAGATCCAGCGTTTGTTTG 57.376 42.857 0.00 0.00 0.00 2.93
834 2396 1.007387 CCAGCGTTTGTTTGCCCTC 60.007 57.895 0.00 0.00 0.00 4.30
843 2405 0.620556 TGTTTGCCCTCTGATCTCCC 59.379 55.000 0.00 0.00 0.00 4.30
884 2446 0.675522 ACCTCACCGGCGGTTTATTG 60.676 55.000 32.12 18.44 31.02 1.90
996 2558 0.652592 GGATTGATTGAGCGTCCACG 59.347 55.000 0.00 0.00 43.27 4.94
1182 2744 2.734673 GCTCAAGGAGTCGCTTGCG 61.735 63.158 8.87 8.87 31.39 4.85
1242 2804 1.300080 GCTGATCCGAGCTCAGAGC 60.300 63.158 15.25 15.25 42.22 4.09
1328 2890 5.846203 TCTATACGGTATGTTTACTTGCCC 58.154 41.667 10.86 0.00 0.00 5.36
1331 2893 3.275999 ACGGTATGTTTACTTGCCCATC 58.724 45.455 0.00 0.00 0.00 3.51
1333 2895 3.560068 CGGTATGTTTACTTGCCCATCTC 59.440 47.826 0.00 0.00 0.00 2.75
1334 2896 4.523083 GGTATGTTTACTTGCCCATCTCA 58.477 43.478 0.00 0.00 0.00 3.27
1335 2897 5.133221 GGTATGTTTACTTGCCCATCTCAT 58.867 41.667 0.00 0.00 0.00 2.90
1336 2898 5.594317 GGTATGTTTACTTGCCCATCTCATT 59.406 40.000 0.00 0.00 0.00 2.57
1337 2899 6.096846 GGTATGTTTACTTGCCCATCTCATTT 59.903 38.462 0.00 0.00 0.00 2.32
1338 2900 5.389859 TGTTTACTTGCCCATCTCATTTG 57.610 39.130 0.00 0.00 0.00 2.32
1339 2901 5.076182 TGTTTACTTGCCCATCTCATTTGA 58.924 37.500 0.00 0.00 0.00 2.69
1340 2902 5.716228 TGTTTACTTGCCCATCTCATTTGAT 59.284 36.000 0.00 0.00 0.00 2.57
1341 2903 6.889177 TGTTTACTTGCCCATCTCATTTGATA 59.111 34.615 0.00 0.00 0.00 2.15
1342 2904 6.942532 TTACTTGCCCATCTCATTTGATAC 57.057 37.500 0.00 0.00 0.00 2.24
1343 2905 5.121380 ACTTGCCCATCTCATTTGATACT 57.879 39.130 0.00 0.00 0.00 2.12
1344 2906 6.252599 ACTTGCCCATCTCATTTGATACTA 57.747 37.500 0.00 0.00 0.00 1.82
1345 2907 6.294473 ACTTGCCCATCTCATTTGATACTAG 58.706 40.000 0.00 0.00 0.00 2.57
1351 2913 7.978975 GCCCATCTCATTTGATACTAGTATCTC 59.021 40.741 32.67 17.44 41.80 2.75
1353 2915 9.853555 CCATCTCATTTGATACTAGTATCTCAC 57.146 37.037 32.67 15.62 41.80 3.51
1365 2927 9.953565 ATACTAGTATCTCACTACTGATTCCTC 57.046 37.037 9.71 0.00 38.80 3.71
1368 2930 9.349713 CTAGTATCTCACTACTGATTCCTCTTT 57.650 37.037 0.00 0.00 38.80 2.52
1370 2932 9.702253 AGTATCTCACTACTGATTCCTCTTTTA 57.298 33.333 0.00 0.00 34.98 1.52
1374 2936 5.867716 TCACTACTGATTCCTCTTTTAACGC 59.132 40.000 0.00 0.00 0.00 4.84
1380 2942 1.365699 TCCTCTTTTAACGCGGCATC 58.634 50.000 12.47 0.00 0.00 3.91
1381 2943 0.026285 CCTCTTTTAACGCGGCATCG 59.974 55.000 12.47 0.00 39.81 3.84
1394 2956 2.414029 GCGGCATCGTTTTCAAATGAGA 60.414 45.455 0.00 0.00 37.35 3.27
1395 2957 3.163594 CGGCATCGTTTTCAAATGAGAC 58.836 45.455 0.98 0.00 37.35 3.36
1416 2978 6.740110 AGACTTAGCAGTTATAACATCCTCG 58.260 40.000 17.65 4.74 31.22 4.63
1420 2982 8.204836 ACTTAGCAGTTATAACATCCTCGAAAT 58.795 33.333 17.65 0.00 0.00 2.17
1450 3034 6.528072 GCCAGTCAAAACTATATGCAACTTTC 59.472 38.462 0.00 0.00 33.25 2.62
1617 3348 1.410004 CTTAGGGTATCCTCCACGCA 58.590 55.000 0.00 0.00 43.66 5.24
1805 3542 9.120538 TGAAATAGTAATTAGGCCAATGACTTC 57.879 33.333 17.87 12.41 38.93 3.01
1883 3862 7.011482 ACGAAGTGATATATTTTCTGTCCAAGC 59.989 37.037 0.00 0.00 42.51 4.01
1957 3936 8.732746 ACCTATGCCTGTAAAGTTTGTATAAG 57.267 34.615 0.00 0.00 0.00 1.73
1969 3948 7.611213 AAGTTTGTATAAGGTGTACATGCTC 57.389 36.000 0.00 0.00 32.56 4.26
1978 3958 3.128938 AGGTGTACATGCTCTAGTTCGAC 59.871 47.826 0.00 0.00 0.00 4.20
2255 4235 2.743664 GGGAAAAGTGCATGAAATTGCC 59.256 45.455 0.00 0.00 42.06 4.52
2273 4253 5.745312 TTGCCTATCGAGATATCACCATT 57.255 39.130 5.32 0.00 0.00 3.16
2340 4331 6.034591 GGCATCATCATTTTGAGTTCTTGAG 58.965 40.000 0.00 0.00 0.00 3.02
2550 4553 7.933033 AGATTTTCTGAAAAGCCAAAATAAGCA 59.067 29.630 23.06 0.00 37.48 3.91
2577 4580 8.434733 ACTTTGACCTAGTTTACAGAGAAAAC 57.565 34.615 0.00 0.00 37.14 2.43
2710 4715 5.515270 GCCAAAGTTTGTAGTGTTTGACTTC 59.485 40.000 14.36 0.00 35.96 3.01
3236 5241 2.479566 TCCTGCTGTCAATTGGTCTC 57.520 50.000 5.42 0.00 0.00 3.36
3254 5259 5.301045 TGGTCTCCGAGAATATTCACGTTAT 59.699 40.000 26.35 3.79 39.17 1.89
3707 5712 3.695830 TGAAGATTGTAGCCTCCGTTT 57.304 42.857 0.00 0.00 0.00 3.60
3708 5713 3.334691 TGAAGATTGTAGCCTCCGTTTG 58.665 45.455 0.00 0.00 0.00 2.93
3815 5820 6.889177 TGGTGAGCCAAGAATATTTTATCACA 59.111 34.615 13.94 0.00 42.83 3.58
3937 5942 8.424274 TGTTGTATATTCTGCAGAACATACTG 57.576 34.615 38.23 8.21 42.11 2.74
4019 6070 6.809196 GCATCTAGTTATATGTACCTGAGCAC 59.191 42.308 0.00 0.00 0.00 4.40
4270 6322 5.636903 ATGCCCATAGTAGAACTTCACAT 57.363 39.130 0.00 0.00 0.00 3.21
4425 6477 7.060421 AGTTGTTTTGAAGGAACTATCTCCAA 58.940 34.615 0.00 0.00 38.49 3.53
4435 6487 2.028130 ACTATCTCCAAGTGCTCCTCG 58.972 52.381 0.00 0.00 0.00 4.63
4461 6513 4.458989 GTGATCAAAAAGTGCCCACTGATA 59.541 41.667 0.00 0.00 41.58 2.15
4484 6536 3.942829 TGGCAGGAATCTTGAGTTACAG 58.057 45.455 0.00 0.00 0.00 2.74
4506 6558 2.616510 CCTAAGGAACTGAAGGGCACAG 60.617 54.545 0.00 0.00 40.86 3.66
4527 6579 7.521423 GCACAGATAAACAGACCATTTGTGTTA 60.521 37.037 6.40 0.00 37.21 2.41
4557 6609 2.273619 AGGCCTCAAAGATGGAAGACT 58.726 47.619 0.00 0.00 0.00 3.24
4568 6620 0.907486 TGGAAGACTCAGGCTCCATG 59.093 55.000 0.00 0.00 0.00 3.66
4681 6733 3.281727 TCAGCATCCTGGTGGTTATTC 57.718 47.619 6.49 0.00 45.21 1.75
4695 6747 3.000727 GGTTATTCAGTTGGGTCGTCAG 58.999 50.000 0.00 0.00 0.00 3.51
4696 6748 3.000727 GTTATTCAGTTGGGTCGTCAGG 58.999 50.000 0.00 0.00 0.00 3.86
4704 6756 3.506455 AGTTGGGTCGTCAGGATATATCG 59.494 47.826 6.64 0.00 0.00 2.92
4712 6764 3.914966 CGTCAGGATATATCGTGCAGAAC 59.085 47.826 24.30 17.64 41.18 3.01
4733 6785 1.517242 CAGAGAGGAACTGTGTTGGC 58.483 55.000 0.00 0.00 41.55 4.52
4766 6818 7.781693 AGTTCAGTTATCATATTTGGAAGGCAT 59.218 33.333 0.00 0.00 0.00 4.40
4769 6821 7.229306 TCAGTTATCATATTTGGAAGGCATGTC 59.771 37.037 0.00 0.00 0.00 3.06
4798 6850 7.614908 CACAAGAAAATCATATGAATTTGCCG 58.385 34.615 20.78 11.76 28.18 5.69
4837 6889 1.757423 AACAGCCAAACACCCCATGC 61.757 55.000 0.00 0.00 0.00 4.06
4843 6895 0.249826 CAAACACCCCATGCCAACAC 60.250 55.000 0.00 0.00 0.00 3.32
4844 6896 1.406860 AAACACCCCATGCCAACACC 61.407 55.000 0.00 0.00 0.00 4.16
4845 6897 3.372730 CACCCCATGCCAACACCG 61.373 66.667 0.00 0.00 0.00 4.94
4848 6900 1.303724 CCCCATGCCAACACCGTTA 60.304 57.895 0.00 0.00 0.00 3.18
4858 6910 4.455190 TGCCAACACCGTTATAACCTTAAC 59.545 41.667 10.01 0.00 0.00 2.01
4870 6925 8.054236 CGTTATAACCTTAACAAATAGCAGTCG 58.946 37.037 10.01 0.00 32.69 4.18
4871 6926 6.920569 ATAACCTTAACAAATAGCAGTCGG 57.079 37.500 0.00 0.00 0.00 4.79
4878 6933 5.401531 AACAAATAGCAGTCGGTCTCTAA 57.598 39.130 0.00 0.00 0.00 2.10
4901 6956 6.650427 AGGAACTAGGTTCAATTGGTTTTC 57.350 37.500 5.42 0.00 43.54 2.29
4927 6982 2.748532 CACACACCATCACATACATGCA 59.251 45.455 0.00 0.00 0.00 3.96
4929 6984 4.018490 ACACACCATCACATACATGCAAT 58.982 39.130 0.00 0.00 0.00 3.56
4940 6995 3.146783 CATGCAATGCTGTTTGGGG 57.853 52.632 6.82 0.00 37.62 4.96
4941 6996 0.322322 CATGCAATGCTGTTTGGGGT 59.678 50.000 6.82 0.00 37.62 4.95
4942 6997 0.609662 ATGCAATGCTGTTTGGGGTC 59.390 50.000 6.82 0.00 0.00 4.46
4943 6998 1.080569 GCAATGCTGTTTGGGGTCG 60.081 57.895 0.00 0.00 0.00 4.79
4944 6999 1.805428 GCAATGCTGTTTGGGGTCGT 61.805 55.000 0.00 0.00 0.00 4.34
4945 7000 1.529226 CAATGCTGTTTGGGGTCGTA 58.471 50.000 0.00 0.00 0.00 3.43
4946 7001 2.091541 CAATGCTGTTTGGGGTCGTAT 58.908 47.619 0.00 0.00 0.00 3.06
4947 7002 1.750193 ATGCTGTTTGGGGTCGTATG 58.250 50.000 0.00 0.00 0.00 2.39
4948 7003 0.322098 TGCTGTTTGGGGTCGTATGG 60.322 55.000 0.00 0.00 0.00 2.74
4949 7004 0.035820 GCTGTTTGGGGTCGTATGGA 60.036 55.000 0.00 0.00 0.00 3.41
4950 7005 2.012051 GCTGTTTGGGGTCGTATGGAG 61.012 57.143 0.00 0.00 0.00 3.86
4951 7006 1.553248 CTGTTTGGGGTCGTATGGAGA 59.447 52.381 0.00 0.00 0.00 3.71
4952 7007 1.979308 TGTTTGGGGTCGTATGGAGAA 59.021 47.619 0.00 0.00 0.00 2.87
4953 7008 2.372504 TGTTTGGGGTCGTATGGAGAAA 59.627 45.455 0.00 0.00 0.00 2.52
4954 7009 3.181442 TGTTTGGGGTCGTATGGAGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
4955 7010 2.773993 TGGGGTCGTATGGAGAAAAC 57.226 50.000 0.00 0.00 0.00 2.43
4956 7011 1.979308 TGGGGTCGTATGGAGAAAACA 59.021 47.619 0.00 0.00 0.00 2.83
4957 7012 2.372504 TGGGGTCGTATGGAGAAAACAA 59.627 45.455 0.00 0.00 0.00 2.83
4958 7013 3.181442 TGGGGTCGTATGGAGAAAACAAA 60.181 43.478 0.00 0.00 0.00 2.83
4959 7014 3.822167 GGGGTCGTATGGAGAAAACAAAA 59.178 43.478 0.00 0.00 0.00 2.44
4960 7015 4.278919 GGGGTCGTATGGAGAAAACAAAAA 59.721 41.667 0.00 0.00 0.00 1.94
4961 7016 5.217393 GGGTCGTATGGAGAAAACAAAAAC 58.783 41.667 0.00 0.00 0.00 2.43
4962 7017 5.221087 GGGTCGTATGGAGAAAACAAAAACA 60.221 40.000 0.00 0.00 0.00 2.83
4963 7018 6.443792 GGTCGTATGGAGAAAACAAAAACAT 58.556 36.000 0.00 0.00 0.00 2.71
4964 7019 7.308710 GGGTCGTATGGAGAAAACAAAAACATA 60.309 37.037 0.00 0.00 0.00 2.29
4965 7020 7.536281 GGTCGTATGGAGAAAACAAAAACATAC 59.464 37.037 0.00 0.00 37.12 2.39
4966 7021 8.071368 GTCGTATGGAGAAAACAAAAACATACA 58.929 33.333 0.00 0.00 39.19 2.29
4967 7022 8.788806 TCGTATGGAGAAAACAAAAACATACAT 58.211 29.630 0.00 0.00 39.19 2.29
4968 7023 8.849490 CGTATGGAGAAAACAAAAACATACATG 58.151 33.333 0.00 0.00 39.19 3.21
4969 7024 7.656707 ATGGAGAAAACAAAAACATACATGC 57.343 32.000 0.00 0.00 0.00 4.06
4970 7025 5.988561 TGGAGAAAACAAAAACATACATGCC 59.011 36.000 0.00 0.00 0.00 4.40
4971 7026 5.988561 GGAGAAAACAAAAACATACATGCCA 59.011 36.000 0.00 0.00 0.00 4.92
4972 7027 6.650390 GGAGAAAACAAAAACATACATGCCAT 59.350 34.615 0.00 0.00 0.00 4.40
4973 7028 7.360269 GGAGAAAACAAAAACATACATGCCATG 60.360 37.037 2.40 2.40 0.00 3.66
4986 7041 7.285172 ACATACATGCCATGCAAGTTTCTATAA 59.715 33.333 4.17 0.00 43.62 0.98
5009 7064 4.877378 TTTTCTGCTCCTTTCAATGCAT 57.123 36.364 0.00 0.00 34.79 3.96
5019 7074 2.373540 TTCAATGCATTGCAAGAGGC 57.626 45.000 30.57 9.37 43.62 4.70
5030 7085 0.035630 GCAAGAGGCATGGTGAGACT 60.036 55.000 0.00 0.00 43.97 3.24
5035 7090 2.103042 GGCATGGTGAGACTCGTGC 61.103 63.158 11.33 11.33 43.10 5.34
5038 7093 1.471501 GCATGGTGAGACTCGTGCATA 60.472 52.381 13.65 0.00 43.26 3.14
5039 7094 2.467838 CATGGTGAGACTCGTGCATAG 58.532 52.381 0.00 0.00 0.00 2.23
5040 7095 0.817654 TGGTGAGACTCGTGCATAGG 59.182 55.000 0.00 0.00 0.00 2.57
5045 7226 3.086282 TGAGACTCGTGCATAGGTGTAA 58.914 45.455 0.00 0.00 0.00 2.41
5050 7231 4.638304 ACTCGTGCATAGGTGTAAAACTT 58.362 39.130 0.00 0.00 0.00 2.66
5066 7247 2.818751 ACTTCACAACCCAGGTTTGA 57.181 45.000 3.22 7.13 36.00 2.69
5084 7266 2.215451 GAATCCTCTTGGCAGGGGCA 62.215 60.000 0.00 0.00 41.24 5.36
5090 7272 2.391678 CTCTTGGCAGGGGCATTATTT 58.608 47.619 0.00 0.00 43.71 1.40
5093 7275 4.555689 TCTTGGCAGGGGCATTATTTATT 58.444 39.130 0.00 0.00 43.71 1.40
5151 7335 3.754965 TCCTCTGGTTTGGATTTGAGTG 58.245 45.455 0.00 0.00 0.00 3.51
5158 7342 7.004086 TCTGGTTTGGATTTGAGTGTCTATTT 58.996 34.615 0.00 0.00 0.00 1.40
5165 7349 6.922957 TGGATTTGAGTGTCTATTTTTGTTGC 59.077 34.615 0.00 0.00 0.00 4.17
5167 7351 7.653311 GGATTTGAGTGTCTATTTTTGTTGCTT 59.347 33.333 0.00 0.00 0.00 3.91
5185 7369 2.754552 GCTTGATATGGTGCCAAGTTCA 59.245 45.455 0.00 0.00 39.41 3.18
5187 7371 4.142093 GCTTGATATGGTGCCAAGTTCATT 60.142 41.667 0.00 0.00 39.41 2.57
5194 7383 5.543507 TGGTGCCAAGTTCATTTGTTTAT 57.456 34.783 0.00 0.00 0.00 1.40
5197 7386 5.179182 GGTGCCAAGTTCATTTGTTTATTGG 59.821 40.000 0.00 0.00 38.95 3.16
5238 7427 2.229784 GCTGCAGTCTTTGTGCCTTAAT 59.770 45.455 16.64 0.00 40.43 1.40
5245 7434 5.416952 CAGTCTTTGTGCCTTAATTCTGGAT 59.583 40.000 1.29 0.00 0.00 3.41
5346 7541 4.643334 GGTAGGCATGGGTAGTTAAAAAGG 59.357 45.833 0.00 0.00 0.00 3.11
5349 7544 3.194755 GGCATGGGTAGTTAAAAAGGGTG 59.805 47.826 0.00 0.00 0.00 4.61
5361 7556 0.314935 AAAGGGTGCATCGCTGTTTG 59.685 50.000 6.63 0.00 39.31 2.93
5364 7559 1.094785 GGGTGCATCGCTGTTTGTAT 58.905 50.000 0.00 0.00 0.00 2.29
5376 7571 4.634004 CGCTGTTTGTATACCAATTCTGGA 59.366 41.667 0.00 0.00 46.92 3.86
5384 7579 4.860802 ATACCAATTCTGGACATGGACA 57.139 40.909 0.00 0.00 46.92 4.02
5408 7603 7.028962 CACATGGTCAATTAATAAGTGTGGTG 58.971 38.462 0.00 0.99 32.91 4.17
5409 7604 6.152661 ACATGGTCAATTAATAAGTGTGGTGG 59.847 38.462 0.00 0.00 0.00 4.61
5410 7605 5.013547 TGGTCAATTAATAAGTGTGGTGGG 58.986 41.667 0.29 0.00 0.00 4.61
5411 7606 4.401202 GGTCAATTAATAAGTGTGGTGGGG 59.599 45.833 0.29 0.00 0.00 4.96
5414 7609 3.748645 TTAATAAGTGTGGTGGGGCAT 57.251 42.857 0.00 0.00 0.00 4.40
5429 7624 5.351458 GTGGGGCATTTCATGTTCTATTTC 58.649 41.667 0.00 0.00 0.00 2.17
5431 7626 5.721000 TGGGGCATTTCATGTTCTATTTCTT 59.279 36.000 0.00 0.00 0.00 2.52
5432 7627 6.894654 TGGGGCATTTCATGTTCTATTTCTTA 59.105 34.615 0.00 0.00 0.00 2.10
5433 7628 7.068593 TGGGGCATTTCATGTTCTATTTCTTAG 59.931 37.037 0.00 0.00 0.00 2.18
5434 7629 7.068716 GGGGCATTTCATGTTCTATTTCTTAGT 59.931 37.037 0.00 0.00 0.00 2.24
5460 7655 6.910536 AAGAGTGTGAGTTTTTGTAGAGTG 57.089 37.500 0.00 0.00 0.00 3.51
5462 7657 6.640518 AGAGTGTGAGTTTTTGTAGAGTGAA 58.359 36.000 0.00 0.00 0.00 3.18
5463 7658 7.275920 AGAGTGTGAGTTTTTGTAGAGTGAAT 58.724 34.615 0.00 0.00 0.00 2.57
5470 7667 7.773224 TGAGTTTTTGTAGAGTGAATCTGGAAA 59.227 33.333 0.00 0.00 39.20 3.13
5472 7669 8.966868 AGTTTTTGTAGAGTGAATCTGGAAAAA 58.033 29.630 8.56 8.56 39.20 1.94
5478 7675 8.593679 TGTAGAGTGAATCTGGAAAAACATCTA 58.406 33.333 0.00 0.00 39.20 1.98
5490 7687 6.070767 TGGAAAAACATCTAGGACAGGAGTAG 60.071 42.308 0.00 0.00 0.00 2.57
5491 7688 6.070710 GGAAAAACATCTAGGACAGGAGTAGT 60.071 42.308 0.00 0.00 0.00 2.73
5492 7689 7.123847 GGAAAAACATCTAGGACAGGAGTAGTA 59.876 40.741 0.00 0.00 0.00 1.82
5493 7690 7.648039 AAAACATCTAGGACAGGAGTAGTAG 57.352 40.000 0.00 0.00 0.00 2.57
5494 7691 6.578313 AACATCTAGGACAGGAGTAGTAGA 57.422 41.667 0.00 0.00 30.73 2.59
5495 7692 6.773583 ACATCTAGGACAGGAGTAGTAGAT 57.226 41.667 0.00 0.00 35.07 1.98
5496 7693 7.156694 ACATCTAGGACAGGAGTAGTAGATT 57.843 40.000 0.00 0.00 33.62 2.40
5562 7759 2.712057 AGCGTTTCCTCTTGCATTTG 57.288 45.000 0.00 0.00 0.00 2.32
5567 7764 4.320202 GCGTTTCCTCTTGCATTTGTTCTA 60.320 41.667 0.00 0.00 0.00 2.10
5610 7842 3.998913 TCTCATCCACCATAAGCACAA 57.001 42.857 0.00 0.00 0.00 3.33
5612 7844 4.858850 TCTCATCCACCATAAGCACAAAT 58.141 39.130 0.00 0.00 0.00 2.32
5614 7846 5.125900 TCTCATCCACCATAAGCACAAATTG 59.874 40.000 0.00 0.00 0.00 2.32
5631 7863 5.477984 ACAAATTGTGATAACTCAGCCACAT 59.522 36.000 0.00 0.00 39.01 3.21
5634 7866 3.599343 TGTGATAACTCAGCCACATGTC 58.401 45.455 0.00 0.00 34.96 3.06
5641 7873 0.752658 TCAGCCACATGTCCTATCCG 59.247 55.000 0.00 0.00 0.00 4.18
5871 8112 0.467384 ACTCATCTTCCTGCATCCCG 59.533 55.000 0.00 0.00 0.00 5.14
5878 8119 0.036388 TTCCTGCATCCCGTTCTCAC 60.036 55.000 0.00 0.00 0.00 3.51
5888 8129 2.637872 TCCCGTTCTCACCAGAAGAAAT 59.362 45.455 0.00 0.00 39.45 2.17
5889 8130 3.072476 TCCCGTTCTCACCAGAAGAAATT 59.928 43.478 0.00 0.00 39.45 1.82
6003 8248 3.072211 GGGGGAAAGAGTCGTTTACTTG 58.928 50.000 0.00 0.00 39.07 3.16
6062 8309 6.881602 AGATTCTTCCTCGTTTTCTGCTTATT 59.118 34.615 0.00 0.00 0.00 1.40
6063 8310 6.481954 TTCTTCCTCGTTTTCTGCTTATTC 57.518 37.500 0.00 0.00 0.00 1.75
6108 8401 7.151308 TGATCGCATATTTTTGTGAAAACCTT 58.849 30.769 0.00 0.00 39.39 3.50
6117 8410 2.297701 TGTGAAAACCTTGTCAGGAGC 58.702 47.619 0.00 0.00 44.19 4.70
6119 8412 1.134220 TGAAAACCTTGTCAGGAGCGT 60.134 47.619 0.00 0.00 44.19 5.07
6122 8415 0.608640 AACCTTGTCAGGAGCGTAGG 59.391 55.000 0.00 0.00 44.19 3.18
6131 8424 1.295423 GGAGCGTAGGTTCCTGCAA 59.705 57.895 10.72 0.00 40.18 4.08
6134 8427 1.398390 GAGCGTAGGTTCCTGCAATTG 59.602 52.381 0.00 0.00 39.88 2.32
6135 8428 0.451783 GCGTAGGTTCCTGCAATTGG 59.548 55.000 7.72 0.00 0.00 3.16
6137 8430 2.643551 CGTAGGTTCCTGCAATTGGAT 58.356 47.619 7.72 0.00 33.09 3.41
6138 8431 3.016736 CGTAGGTTCCTGCAATTGGATT 58.983 45.455 7.72 0.00 33.09 3.01
6139 8432 3.181497 CGTAGGTTCCTGCAATTGGATTG 60.181 47.826 7.72 0.00 43.06 2.67
6140 8433 3.173953 AGGTTCCTGCAATTGGATTGA 57.826 42.857 7.72 1.39 42.83 2.57
6141 8434 3.094572 AGGTTCCTGCAATTGGATTGAG 58.905 45.455 7.72 0.00 42.83 3.02
6146 8439 4.267536 TCCTGCAATTGGATTGAGAAGAG 58.732 43.478 7.72 0.00 42.83 2.85
6160 8458 4.645535 TGAGAAGAGAATTGGTCCAGTTG 58.354 43.478 4.02 0.00 0.00 3.16
6162 8460 2.887151 AGAGAATTGGTCCAGTTGGG 57.113 50.000 4.02 0.00 35.41 4.12
6170 8468 0.038310 GGTCCAGTTGGGGAGGAAAG 59.962 60.000 0.00 0.00 37.71 2.62
6179 8477 4.111053 GGAGGAAAGTCGGGCCCC 62.111 72.222 18.66 2.17 0.00 5.80
6426 8776 1.946475 GCCGGTCCTACCTGTCAGTC 61.946 65.000 1.90 0.00 35.66 3.51
6427 8777 1.321074 CCGGTCCTACCTGTCAGTCC 61.321 65.000 0.00 0.00 35.66 3.85
6428 8778 0.611062 CGGTCCTACCTGTCAGTCCA 60.611 60.000 0.00 0.00 35.66 4.02
6429 8779 1.187087 GGTCCTACCTGTCAGTCCAG 58.813 60.000 0.00 0.00 34.73 3.86
6430 8780 1.550409 GGTCCTACCTGTCAGTCCAGT 60.550 57.143 0.00 0.00 34.73 4.00
6543 8898 2.914289 GCCCTCATCACCTCTGGG 59.086 66.667 0.00 0.00 40.74 4.45
6563 8918 1.159664 ACCTCTCCTCCTGCACCTT 59.840 57.895 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.668457 CCTCGGATCAGAACAAGTTTCG 59.332 50.000 0.00 0.00 0.00 3.46
47 48 2.956964 GTCATCGCGCTTCCCTCG 60.957 66.667 5.56 0.00 0.00 4.63
68 69 1.154908 GCCGTTAATATCGCACGCG 60.155 57.895 3.53 3.53 41.35 6.01
97 98 6.139679 TCCTTCTCTTCTCTTCTCTTCTCT 57.860 41.667 0.00 0.00 0.00 3.10
98 99 6.834168 TTCCTTCTCTTCTCTTCTCTTCTC 57.166 41.667 0.00 0.00 0.00 2.87
99 100 6.953520 TCATTCCTTCTCTTCTCTTCTCTTCT 59.046 38.462 0.00 0.00 0.00 2.85
100 101 7.169158 TCATTCCTTCTCTTCTCTTCTCTTC 57.831 40.000 0.00 0.00 0.00 2.87
101 102 6.351286 GCTCATTCCTTCTCTTCTCTTCTCTT 60.351 42.308 0.00 0.00 0.00 2.85
102 103 5.127682 GCTCATTCCTTCTCTTCTCTTCTCT 59.872 44.000 0.00 0.00 0.00 3.10
103 104 5.351458 GCTCATTCCTTCTCTTCTCTTCTC 58.649 45.833 0.00 0.00 0.00 2.87
104 105 4.162131 GGCTCATTCCTTCTCTTCTCTTCT 59.838 45.833 0.00 0.00 0.00 2.85
105 106 4.441792 GGCTCATTCCTTCTCTTCTCTTC 58.558 47.826 0.00 0.00 0.00 2.87
106 107 3.118811 CGGCTCATTCCTTCTCTTCTCTT 60.119 47.826 0.00 0.00 0.00 2.85
107 108 2.430332 CGGCTCATTCCTTCTCTTCTCT 59.570 50.000 0.00 0.00 0.00 3.10
108 109 2.167487 ACGGCTCATTCCTTCTCTTCTC 59.833 50.000 0.00 0.00 0.00 2.87
109 110 2.093764 CACGGCTCATTCCTTCTCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
110 111 2.275318 CACGGCTCATTCCTTCTCTTC 58.725 52.381 0.00 0.00 0.00 2.87
111 112 1.625818 ACACGGCTCATTCCTTCTCTT 59.374 47.619 0.00 0.00 0.00 2.85
112 113 1.205893 GACACGGCTCATTCCTTCTCT 59.794 52.381 0.00 0.00 0.00 3.10
125 126 0.861837 CTCACAGTCAAAGACACGGC 59.138 55.000 0.00 0.00 34.60 5.68
134 144 5.943416 TCCTTTGTTTCTTTCTCACAGTCAA 59.057 36.000 0.00 0.00 0.00 3.18
138 155 6.753744 CCTTTTCCTTTGTTTCTTTCTCACAG 59.246 38.462 0.00 0.00 0.00 3.66
141 158 6.889722 TCTCCTTTTCCTTTGTTTCTTTCTCA 59.110 34.615 0.00 0.00 0.00 3.27
203 220 4.803426 CTCGCTCCCCTCGTGTGC 62.803 72.222 0.00 0.00 0.00 4.57
386 1918 2.534903 GCTATTTCGAGGGGTGCGC 61.535 63.158 0.00 0.00 0.00 6.09
487 2026 5.185828 CCAAAGAAAGAAAGGATTAGTGGGG 59.814 44.000 0.00 0.00 0.00 4.96
775 2337 3.644399 GACGGGGAGGCGACAAGAC 62.644 68.421 0.00 0.00 0.00 3.01
821 2383 2.489722 GGAGATCAGAGGGCAAACAAAC 59.510 50.000 0.00 0.00 0.00 2.93
829 2391 1.743321 CGAGTGGGAGATCAGAGGGC 61.743 65.000 0.00 0.00 0.00 5.19
834 2396 1.227205 GCAGCGAGTGGGAGATCAG 60.227 63.158 0.00 0.00 0.00 2.90
884 2446 1.878522 CGAGCAGGACGTATGCACC 60.879 63.158 22.85 14.54 46.31 5.01
1242 2804 2.740055 AGAAGCGCGGCAAGAGTG 60.740 61.111 8.83 0.00 0.00 3.51
1323 2885 6.252599 ACTAGTATCAAATGAGATGGGCAA 57.747 37.500 0.00 0.00 0.00 4.52
1337 2899 9.727859 GGAATCAGTAGTGAGATACTAGTATCA 57.272 37.037 33.87 20.06 42.36 2.15
1338 2900 9.953565 AGGAATCAGTAGTGAGATACTAGTATC 57.046 37.037 28.41 28.41 42.36 2.24
1339 2901 9.953565 GAGGAATCAGTAGTGAGATACTAGTAT 57.046 37.037 15.37 15.37 42.36 2.12
1340 2902 9.161572 AGAGGAATCAGTAGTGAGATACTAGTA 57.838 37.037 4.77 4.77 42.36 1.82
1341 2903 8.041143 AGAGGAATCAGTAGTGAGATACTAGT 57.959 38.462 6.39 0.00 44.53 2.57
1342 2904 8.918202 AAGAGGAATCAGTAGTGAGATACTAG 57.082 38.462 6.39 0.00 42.37 2.57
1343 2905 9.702253 AAAAGAGGAATCAGTAGTGAGATACTA 57.298 33.333 6.39 0.00 40.89 1.82
1344 2906 8.602472 AAAAGAGGAATCAGTAGTGAGATACT 57.398 34.615 6.39 3.65 43.56 2.12
1351 2913 5.220228 CGCGTTAAAAGAGGAATCAGTAGTG 60.220 44.000 0.00 0.00 0.00 2.74
1353 2915 4.267928 CCGCGTTAAAAGAGGAATCAGTAG 59.732 45.833 4.92 0.00 0.00 2.57
1356 2918 2.223044 GCCGCGTTAAAAGAGGAATCAG 60.223 50.000 4.92 0.00 0.00 2.90
1374 2936 3.120199 AGTCTCATTTGAAAACGATGCCG 60.120 43.478 0.00 0.00 42.50 5.69
1380 2942 5.990408 ACTGCTAAGTCTCATTTGAAAACG 58.010 37.500 0.00 0.00 26.77 3.60
1394 2956 6.710597 TCGAGGATGTTATAACTGCTAAGT 57.289 37.500 16.33 0.00 38.71 2.24
1395 2957 8.594881 ATTTCGAGGATGTTATAACTGCTAAG 57.405 34.615 16.33 9.79 0.00 2.18
1407 2969 5.010282 ACTGGCTAAAATTTCGAGGATGTT 58.990 37.500 0.00 0.00 0.00 2.71
1408 2970 4.589908 ACTGGCTAAAATTTCGAGGATGT 58.410 39.130 0.00 0.00 0.00 3.06
1409 2971 4.635765 TGACTGGCTAAAATTTCGAGGATG 59.364 41.667 0.00 0.00 0.00 3.51
1420 2982 7.695480 TGCATATAGTTTTGACTGGCTAAAA 57.305 32.000 0.00 0.00 0.00 1.52
1479 3086 6.360681 GTGAAAATACAAGTGACATGAAGTGC 59.639 38.462 0.00 0.00 0.00 4.40
1650 3385 8.911918 TTCTGGTTACTGCAATTTTCTAAGTA 57.088 30.769 0.00 0.00 0.00 2.24
1651 3386 7.817418 TTCTGGTTACTGCAATTTTCTAAGT 57.183 32.000 0.00 0.00 0.00 2.24
1652 3387 8.134895 TGTTTCTGGTTACTGCAATTTTCTAAG 58.865 33.333 0.00 0.00 0.00 2.18
1775 3512 9.693739 TCATTGGCCTAATTACTATTTCAGAAA 57.306 29.630 3.32 0.00 0.00 2.52
1776 3513 9.120538 GTCATTGGCCTAATTACTATTTCAGAA 57.879 33.333 3.32 0.00 0.00 3.02
1777 3514 8.494433 AGTCATTGGCCTAATTACTATTTCAGA 58.506 33.333 3.32 0.00 32.77 3.27
1778 3515 8.682936 AGTCATTGGCCTAATTACTATTTCAG 57.317 34.615 3.32 0.00 32.77 3.02
1779 3516 9.120538 GAAGTCATTGGCCTAATTACTATTTCA 57.879 33.333 3.32 0.00 33.25 2.69
1780 3517 9.343539 AGAAGTCATTGGCCTAATTACTATTTC 57.656 33.333 3.32 4.74 33.25 2.17
1925 3904 5.010282 ACTTTACAGGCATAGGTTTTGAGG 58.990 41.667 0.00 0.00 0.00 3.86
1957 3936 3.128938 AGTCGAACTAGAGCATGTACACC 59.871 47.826 0.00 0.00 0.00 4.16
1969 3948 3.502920 AGCAATTGTCGAGTCGAACTAG 58.497 45.455 18.42 7.77 37.72 2.57
1978 3958 4.437239 ACCAGAATAGAGCAATTGTCGAG 58.563 43.478 7.40 0.00 0.00 4.04
2255 4235 6.312426 GGCAAGAAATGGTGATATCTCGATAG 59.688 42.308 3.98 0.00 0.00 2.08
2273 4253 0.178964 CAACCTCCAAGGGGCAAGAA 60.179 55.000 0.00 0.00 40.58 2.52
2308 4288 0.554305 AATGATGATGCCAGGCTCCA 59.446 50.000 14.15 10.86 0.00 3.86
2310 4290 2.691526 TCAAAATGATGATGCCAGGCTC 59.308 45.455 14.15 8.42 0.00 4.70
2311 4291 2.693591 CTCAAAATGATGATGCCAGGCT 59.306 45.455 14.15 0.00 0.00 4.58
2340 4331 4.708726 AGTAGAGGCAAATGACAAATGC 57.291 40.909 7.16 7.16 39.33 3.56
2550 4553 9.457436 TTTTCTCTGTAAACTAGGTCAAAGTTT 57.543 29.630 6.47 6.47 46.23 2.66
2663 4668 8.976353 TGGCCATGTTTATAGACAAAAATATGT 58.024 29.630 0.00 0.00 34.33 2.29
2740 4745 7.420029 TCTACTTTTCTAGTACTCCCTCCATT 58.580 38.462 0.00 0.00 38.33 3.16
2870 4875 5.163457 ACCTGAATGTGAAACCGAAAAATGT 60.163 36.000 0.00 0.00 34.36 2.71
3075 5080 2.825861 AACGATGTTGTAGTTCCGGT 57.174 45.000 0.00 0.00 0.00 5.28
3236 5241 7.000575 ACACAAATAACGTGAATATTCTCGG 57.999 36.000 31.73 20.27 45.34 4.63
3254 5259 6.367422 GTGTGAATGGAAAGTTGAAACACAAA 59.633 34.615 0.00 0.00 40.36 2.83
3449 5454 9.691362 GGAATTAGTAGAAATTTCACAGCAAAA 57.309 29.630 19.99 5.58 0.00 2.44
3707 5712 8.087750 CAGAAGTGCCTTTAAAATCCAATTACA 58.912 33.333 0.00 0.00 0.00 2.41
3708 5713 8.088365 ACAGAAGTGCCTTTAAAATCCAATTAC 58.912 33.333 0.00 0.00 0.00 1.89
3937 5942 4.851558 GCAAGACGGAATCATAACACAAAC 59.148 41.667 0.00 0.00 0.00 2.93
3979 6030 6.552445 ACTAGATGCTTCTACAACAAGGAT 57.448 37.500 5.26 0.00 34.85 3.24
4019 6070 8.135529 TGAGACACAGATAGATAAATTACGTGG 58.864 37.037 0.00 0.00 0.00 4.94
4270 6322 0.687757 ATCTAAGCACTCCCGAGCCA 60.688 55.000 0.00 0.00 0.00 4.75
4435 6487 1.340889 TGGGCACTTTTTGATCACAGC 59.659 47.619 0.00 0.00 0.00 4.40
4461 6513 4.922206 TGTAACTCAAGATTCCTGCCATT 58.078 39.130 0.00 0.00 0.00 3.16
4484 6536 0.328258 TGCCCTTCAGTTCCTTAGGC 59.672 55.000 0.00 0.00 39.41 3.93
4506 6558 9.128107 CACATTAACACAAATGGTCTGTTTATC 57.872 33.333 2.05 0.00 40.48 1.75
4527 6579 4.038271 TCTTTGAGGCCTTGATCACATT 57.962 40.909 6.77 0.00 0.00 2.71
4557 6609 0.322816 GAGTTTGCCATGGAGCCTGA 60.323 55.000 18.40 0.00 0.00 3.86
4568 6620 3.134458 CCTTGATATCGGAGAGTTTGCC 58.866 50.000 7.33 0.00 43.63 4.52
4651 6703 1.941294 CAGGATGCTGATTCTGTGAGC 59.059 52.381 8.85 0.00 37.60 4.26
4681 6733 4.616143 CGATATATCCTGACGACCCAACTG 60.616 50.000 7.15 0.00 0.00 3.16
4712 6764 1.143305 CAACACAGTTCCTCTCTGCG 58.857 55.000 0.00 0.00 36.50 5.18
4766 6818 7.451501 TCATATGATTTTCTTGTGCAAGACA 57.548 32.000 13.50 9.18 46.13 3.41
4769 6821 9.967245 CAAATTCATATGATTTTCTTGTGCAAG 57.033 29.630 18.30 5.63 39.71 4.01
4779 6831 8.776376 AAAAGACGGCAAATTCATATGATTTT 57.224 26.923 16.29 16.29 0.00 1.82
4780 6832 8.776376 AAAAAGACGGCAAATTCATATGATTT 57.224 26.923 6.17 6.63 0.00 2.17
4806 6858 1.781786 TGGCTGTTTGCTTAAACCCA 58.218 45.000 0.00 0.00 42.39 4.51
4812 6864 1.410882 GGGTGTTTGGCTGTTTGCTTA 59.589 47.619 0.00 0.00 42.39 3.09
4816 6868 0.758123 ATGGGGTGTTTGGCTGTTTG 59.242 50.000 0.00 0.00 0.00 2.93
4817 6869 0.758123 CATGGGGTGTTTGGCTGTTT 59.242 50.000 0.00 0.00 0.00 2.83
4837 6889 6.557291 TTGTTAAGGTTATAACGGTGTTGG 57.443 37.500 9.46 0.00 38.37 3.77
4843 6895 8.205131 ACTGCTATTTGTTAAGGTTATAACGG 57.795 34.615 9.46 0.00 38.37 4.44
4844 6896 8.054236 CGACTGCTATTTGTTAAGGTTATAACG 58.946 37.037 9.46 0.00 38.37 3.18
4845 6897 8.333186 CCGACTGCTATTTGTTAAGGTTATAAC 58.667 37.037 7.09 7.09 36.52 1.89
4848 6900 6.412214 ACCGACTGCTATTTGTTAAGGTTAT 58.588 36.000 0.00 0.00 0.00 1.89
4858 6910 4.098044 TCCTTAGAGACCGACTGCTATTTG 59.902 45.833 0.00 0.00 0.00 2.32
4870 6925 5.997384 TTGAACCTAGTTCCTTAGAGACC 57.003 43.478 5.09 0.00 41.35 3.85
4871 6926 6.819146 CCAATTGAACCTAGTTCCTTAGAGAC 59.181 42.308 7.12 0.00 41.35 3.36
4878 6933 6.265422 CAGAAAACCAATTGAACCTAGTTCCT 59.735 38.462 7.12 0.58 41.35 3.36
4901 6956 4.064388 TGTATGTGATGGTGTGTGTTCAG 58.936 43.478 0.00 0.00 0.00 3.02
4927 6982 2.091541 CATACGACCCCAAACAGCATT 58.908 47.619 0.00 0.00 0.00 3.56
4929 6984 0.322098 CCATACGACCCCAAACAGCA 60.322 55.000 0.00 0.00 0.00 4.41
4930 6985 0.035820 TCCATACGACCCCAAACAGC 60.036 55.000 0.00 0.00 0.00 4.40
4931 6986 1.553248 TCTCCATACGACCCCAAACAG 59.447 52.381 0.00 0.00 0.00 3.16
4932 6987 1.646912 TCTCCATACGACCCCAAACA 58.353 50.000 0.00 0.00 0.00 2.83
4933 6988 2.773993 TTCTCCATACGACCCCAAAC 57.226 50.000 0.00 0.00 0.00 2.93
4934 6989 3.181442 TGTTTTCTCCATACGACCCCAAA 60.181 43.478 0.00 0.00 0.00 3.28
4935 6990 2.372504 TGTTTTCTCCATACGACCCCAA 59.627 45.455 0.00 0.00 0.00 4.12
4936 6991 1.979308 TGTTTTCTCCATACGACCCCA 59.021 47.619 0.00 0.00 0.00 4.96
4937 6992 2.773993 TGTTTTCTCCATACGACCCC 57.226 50.000 0.00 0.00 0.00 4.95
4938 6993 5.217393 GTTTTTGTTTTCTCCATACGACCC 58.783 41.667 0.00 0.00 0.00 4.46
4939 6994 5.823353 TGTTTTTGTTTTCTCCATACGACC 58.177 37.500 0.00 0.00 0.00 4.79
4940 6995 8.071368 TGTATGTTTTTGTTTTCTCCATACGAC 58.929 33.333 0.00 0.00 37.21 4.34
4941 6996 8.155821 TGTATGTTTTTGTTTTCTCCATACGA 57.844 30.769 0.00 0.00 37.21 3.43
4942 6997 8.849490 CATGTATGTTTTTGTTTTCTCCATACG 58.151 33.333 0.00 0.00 37.21 3.06
4943 6998 8.647226 GCATGTATGTTTTTGTTTTCTCCATAC 58.353 33.333 0.00 0.00 35.76 2.39
4944 6999 7.816995 GGCATGTATGTTTTTGTTTTCTCCATA 59.183 33.333 0.00 0.00 0.00 2.74
4945 7000 6.650390 GGCATGTATGTTTTTGTTTTCTCCAT 59.350 34.615 0.00 0.00 0.00 3.41
4946 7001 5.988561 GGCATGTATGTTTTTGTTTTCTCCA 59.011 36.000 0.00 0.00 0.00 3.86
4947 7002 5.988561 TGGCATGTATGTTTTTGTTTTCTCC 59.011 36.000 0.00 0.00 0.00 3.71
4948 7003 7.512297 CATGGCATGTATGTTTTTGTTTTCTC 58.488 34.615 19.32 0.00 0.00 2.87
4949 7004 6.073112 GCATGGCATGTATGTTTTTGTTTTCT 60.073 34.615 26.94 0.00 0.00 2.52
4950 7005 6.079120 GCATGGCATGTATGTTTTTGTTTTC 58.921 36.000 26.94 2.39 0.00 2.29
4951 7006 5.530171 TGCATGGCATGTATGTTTTTGTTTT 59.470 32.000 26.94 0.00 31.71 2.43
4952 7007 5.061853 TGCATGGCATGTATGTTTTTGTTT 58.938 33.333 26.94 0.00 31.71 2.83
4953 7008 4.639334 TGCATGGCATGTATGTTTTTGTT 58.361 34.783 26.94 0.00 31.71 2.83
4954 7009 4.268797 TGCATGGCATGTATGTTTTTGT 57.731 36.364 26.94 0.00 31.71 2.83
4955 7010 4.691685 ACTTGCATGGCATGTATGTTTTTG 59.308 37.500 26.94 10.36 43.37 2.44
4956 7011 4.897140 ACTTGCATGGCATGTATGTTTTT 58.103 34.783 26.94 7.72 43.37 1.94
4957 7012 4.540359 ACTTGCATGGCATGTATGTTTT 57.460 36.364 26.94 8.05 43.37 2.43
4958 7013 4.540359 AACTTGCATGGCATGTATGTTT 57.460 36.364 30.36 20.19 44.18 2.83
4959 7014 4.221262 AGAAACTTGCATGGCATGTATGTT 59.779 37.500 30.36 30.36 44.18 2.71
4960 7015 3.765511 AGAAACTTGCATGGCATGTATGT 59.234 39.130 26.94 25.58 44.18 2.29
4961 7016 4.380841 AGAAACTTGCATGGCATGTATG 57.619 40.909 26.94 24.97 44.18 2.39
4962 7017 7.822161 TTATAGAAACTTGCATGGCATGTAT 57.178 32.000 26.94 16.20 44.18 2.29
4963 7018 7.822161 ATTATAGAAACTTGCATGGCATGTA 57.178 32.000 26.94 21.22 44.18 2.29
4964 7019 6.720112 ATTATAGAAACTTGCATGGCATGT 57.280 33.333 26.94 7.53 46.28 3.21
4965 7020 8.428186 AAAATTATAGAAACTTGCATGGCATG 57.572 30.769 22.99 22.99 38.76 4.06
4966 7021 9.101655 GAAAAATTATAGAAACTTGCATGGCAT 57.898 29.630 4.44 0.00 38.76 4.40
4967 7022 8.313292 AGAAAAATTATAGAAACTTGCATGGCA 58.687 29.630 4.44 0.00 36.47 4.92
4968 7023 8.598075 CAGAAAAATTATAGAAACTTGCATGGC 58.402 33.333 4.44 0.00 0.00 4.40
4969 7024 8.598075 GCAGAAAAATTATAGAAACTTGCATGG 58.402 33.333 4.44 0.00 0.00 3.66
4970 7025 9.362539 AGCAGAAAAATTATAGAAACTTGCATG 57.637 29.630 0.00 0.00 0.00 4.06
4971 7026 9.578439 GAGCAGAAAAATTATAGAAACTTGCAT 57.422 29.630 0.00 0.00 0.00 3.96
4972 7027 8.028938 GGAGCAGAAAAATTATAGAAACTTGCA 58.971 33.333 0.00 0.00 0.00 4.08
4973 7028 8.246871 AGGAGCAGAAAAATTATAGAAACTTGC 58.753 33.333 0.00 0.00 0.00 4.01
4986 7041 5.217978 TGCATTGAAAGGAGCAGAAAAAT 57.782 34.783 0.00 0.00 32.48 1.82
5019 7074 2.467838 CTATGCACGAGTCTCACCATG 58.532 52.381 0.00 0.00 0.00 3.66
5020 7075 1.410517 CCTATGCACGAGTCTCACCAT 59.589 52.381 0.00 1.96 0.00 3.55
5030 7085 4.449743 GTGAAGTTTTACACCTATGCACGA 59.550 41.667 0.00 0.00 0.00 4.35
5035 7090 5.533154 TGGGTTGTGAAGTTTTACACCTATG 59.467 40.000 0.00 0.00 36.35 2.23
5038 7093 3.951680 CTGGGTTGTGAAGTTTTACACCT 59.048 43.478 0.00 0.00 36.35 4.00
5039 7094 3.067601 CCTGGGTTGTGAAGTTTTACACC 59.932 47.826 0.00 0.00 36.35 4.16
5040 7095 3.697542 ACCTGGGTTGTGAAGTTTTACAC 59.302 43.478 0.00 0.00 37.51 2.90
5045 7226 3.436243 TCAAACCTGGGTTGTGAAGTTT 58.564 40.909 23.03 0.00 38.47 2.66
5050 7231 2.176798 AGGATTCAAACCTGGGTTGTGA 59.823 45.455 23.03 13.87 38.47 3.58
5066 7247 1.587522 ATGCCCCTGCCAAGAGGATT 61.588 55.000 0.00 0.00 34.69 3.01
5090 7272 7.759489 ACATCAAGTGTCCAGCTTTAAAATA 57.241 32.000 0.00 0.00 35.77 1.40
5136 7318 7.926018 ACAAAAATAGACACTCAAATCCAAACC 59.074 33.333 0.00 0.00 0.00 3.27
5137 7319 8.871686 ACAAAAATAGACACTCAAATCCAAAC 57.128 30.769 0.00 0.00 0.00 2.93
5138 7320 9.311916 CAACAAAAATAGACACTCAAATCCAAA 57.688 29.630 0.00 0.00 0.00 3.28
5151 7335 7.009540 GCACCATATCAAGCAACAAAAATAGAC 59.990 37.037 0.00 0.00 0.00 2.59
5158 7342 2.896044 TGGCACCATATCAAGCAACAAA 59.104 40.909 0.00 0.00 0.00 2.83
5165 7349 5.587388 AATGAACTTGGCACCATATCAAG 57.413 39.130 0.00 0.00 42.37 3.02
5167 7351 4.771577 ACAAATGAACTTGGCACCATATCA 59.228 37.500 0.00 0.00 0.00 2.15
5185 7369 3.518705 TCCATGCAGCCCAATAAACAAAT 59.481 39.130 0.00 0.00 0.00 2.32
5187 7371 2.496871 CTCCATGCAGCCCAATAAACAA 59.503 45.455 0.00 0.00 0.00 2.83
5221 7410 4.761739 TCCAGAATTAAGGCACAAAGACTG 59.238 41.667 0.00 0.00 34.00 3.51
5273 7467 0.524862 CTCGCTTGCAGCAAAATCCT 59.475 50.000 9.65 0.00 42.58 3.24
5290 7484 7.370383 TGATTTTGTGTGAGCTATTTTTCCTC 58.630 34.615 0.00 0.00 0.00 3.71
5346 7541 2.031683 GGTATACAAACAGCGATGCACC 59.968 50.000 0.00 0.00 0.00 5.01
5349 7544 4.552166 ATTGGTATACAAACAGCGATGC 57.448 40.909 0.00 0.00 43.46 3.91
5361 7556 5.527582 GTGTCCATGTCCAGAATTGGTATAC 59.472 44.000 0.00 0.00 45.26 1.47
5364 7559 3.329225 TGTGTCCATGTCCAGAATTGGTA 59.671 43.478 0.00 0.00 45.26 3.25
5376 7571 7.615365 ACTTATTAATTGACCATGTGTCCATGT 59.385 33.333 10.60 0.00 45.83 3.21
5384 7579 6.152661 CCACCACACTTATTAATTGACCATGT 59.847 38.462 0.00 0.00 0.00 3.21
5395 7590 3.748645 AATGCCCCACCACACTTATTA 57.251 42.857 0.00 0.00 0.00 0.98
5396 7591 2.621556 AATGCCCCACCACACTTATT 57.378 45.000 0.00 0.00 0.00 1.40
5400 7595 0.114954 ATGAAATGCCCCACCACACT 59.885 50.000 0.00 0.00 0.00 3.55
5402 7597 2.668612 CATGAAATGCCCCACCACA 58.331 52.632 0.00 0.00 37.62 4.17
5408 7603 7.068716 ACTAAGAAATAGAACATGAAATGCCCC 59.931 37.037 0.00 0.00 40.70 5.80
5409 7604 7.917505 CACTAAGAAATAGAACATGAAATGCCC 59.082 37.037 0.00 0.00 40.70 5.36
5410 7605 8.677300 TCACTAAGAAATAGAACATGAAATGCC 58.323 33.333 0.00 0.00 40.70 4.40
5429 7624 7.752695 ACAAAAACTCACACTCTTTCACTAAG 58.247 34.615 0.00 0.00 35.04 2.18
5431 7626 8.255206 TCTACAAAAACTCACACTCTTTCACTA 58.745 33.333 0.00 0.00 0.00 2.74
5432 7627 7.103641 TCTACAAAAACTCACACTCTTTCACT 58.896 34.615 0.00 0.00 0.00 3.41
5433 7628 7.064728 ACTCTACAAAAACTCACACTCTTTCAC 59.935 37.037 0.00 0.00 0.00 3.18
5434 7629 7.064609 CACTCTACAAAAACTCACACTCTTTCA 59.935 37.037 0.00 0.00 0.00 2.69
5438 7633 6.222038 TCACTCTACAAAAACTCACACTCT 57.778 37.500 0.00 0.00 0.00 3.24
5439 7634 6.903883 TTCACTCTACAAAAACTCACACTC 57.096 37.500 0.00 0.00 0.00 3.51
5440 7635 7.225538 CAGATTCACTCTACAAAAACTCACACT 59.774 37.037 0.00 0.00 31.13 3.55
5441 7636 7.348201 CAGATTCACTCTACAAAAACTCACAC 58.652 38.462 0.00 0.00 31.13 3.82
5442 7637 6.483307 CCAGATTCACTCTACAAAAACTCACA 59.517 38.462 0.00 0.00 31.13 3.58
5443 7638 6.706270 TCCAGATTCACTCTACAAAAACTCAC 59.294 38.462 0.00 0.00 31.13 3.51
5444 7639 6.826668 TCCAGATTCACTCTACAAAAACTCA 58.173 36.000 0.00 0.00 31.13 3.41
5445 7640 7.730364 TTCCAGATTCACTCTACAAAAACTC 57.270 36.000 0.00 0.00 31.13 3.01
5446 7641 8.519799 TTTTCCAGATTCACTCTACAAAAACT 57.480 30.769 0.00 0.00 31.13 2.66
5447 7642 9.020813 GTTTTTCCAGATTCACTCTACAAAAAC 57.979 33.333 12.85 12.85 41.53 2.43
5448 7643 8.744652 TGTTTTTCCAGATTCACTCTACAAAAA 58.255 29.630 0.00 0.00 34.43 1.94
5460 7655 6.317391 CCTGTCCTAGATGTTTTTCCAGATTC 59.683 42.308 0.00 0.00 0.00 2.52
5462 7657 5.488919 TCCTGTCCTAGATGTTTTTCCAGAT 59.511 40.000 0.00 0.00 0.00 2.90
5463 7658 4.844085 TCCTGTCCTAGATGTTTTTCCAGA 59.156 41.667 0.00 0.00 0.00 3.86
5470 7667 6.971340 TCTACTACTCCTGTCCTAGATGTTT 58.029 40.000 0.00 0.00 0.00 2.83
5472 7669 6.773583 ATCTACTACTCCTGTCCTAGATGT 57.226 41.667 0.00 0.00 30.26 3.06
5478 7675 6.578313 TCTACAATCTACTACTCCTGTCCT 57.422 41.667 0.00 0.00 0.00 3.85
5490 7687 7.753309 TCCTTGAGCTCTATCTACAATCTAC 57.247 40.000 16.19 0.00 0.00 2.59
5491 7688 8.768501 TTTCCTTGAGCTCTATCTACAATCTA 57.231 34.615 16.19 0.00 0.00 1.98
5492 7689 7.667575 TTTCCTTGAGCTCTATCTACAATCT 57.332 36.000 16.19 0.00 0.00 2.40
5493 7690 7.042119 GCTTTTCCTTGAGCTCTATCTACAATC 60.042 40.741 16.19 0.00 36.01 2.67
5494 7691 6.765512 GCTTTTCCTTGAGCTCTATCTACAAT 59.234 38.462 16.19 0.00 36.01 2.71
5495 7692 6.109359 GCTTTTCCTTGAGCTCTATCTACAA 58.891 40.000 16.19 0.00 36.01 2.41
5496 7693 5.395768 GGCTTTTCCTTGAGCTCTATCTACA 60.396 44.000 16.19 0.00 38.89 2.74
5610 7842 5.012239 ACATGTGGCTGAGTTATCACAATT 58.988 37.500 0.00 0.00 42.35 2.32
5612 7844 4.002982 GACATGTGGCTGAGTTATCACAA 58.997 43.478 1.15 0.00 42.35 3.33
5614 7846 2.939103 GGACATGTGGCTGAGTTATCAC 59.061 50.000 1.15 0.00 0.00 3.06
5624 7856 0.398522 TCCGGATAGGACATGTGGCT 60.399 55.000 1.15 0.00 45.98 4.75
5871 8112 8.188139 TGTACAAAAATTTCTTCTGGTGAGAAC 58.812 33.333 0.00 0.00 34.36 3.01
5961 8206 3.494232 CAAGAACAAAACCGTTTCGTGT 58.506 40.909 0.00 0.00 0.00 4.49
6003 8248 3.627577 TCCCATCGCAGAAAAGAATAAGC 59.372 43.478 0.00 0.00 43.58 3.09
6062 8309 1.905894 TCCGATCCAAATCACCACAGA 59.094 47.619 0.00 0.00 31.76 3.41
6063 8310 2.401583 TCCGATCCAAATCACCACAG 57.598 50.000 0.00 0.00 31.76 3.66
6093 8350 5.719173 CTCCTGACAAGGTTTTCACAAAAA 58.281 37.500 0.00 0.00 44.82 1.94
6108 8401 0.251653 AGGAACCTACGCTCCTGACA 60.252 55.000 0.00 0.00 40.70 3.58
6117 8410 2.107950 TCCAATTGCAGGAACCTACG 57.892 50.000 0.00 0.00 30.71 3.51
6119 8412 4.018506 TCTCAATCCAATTGCAGGAACCTA 60.019 41.667 0.00 0.00 38.93 3.08
6122 8415 4.460382 TCTTCTCAATCCAATTGCAGGAAC 59.540 41.667 0.00 0.00 38.93 3.62
6131 8424 5.890419 GGACCAATTCTCTTCTCAATCCAAT 59.110 40.000 0.00 0.00 0.00 3.16
6134 8427 4.848357 TGGACCAATTCTCTTCTCAATCC 58.152 43.478 0.00 0.00 0.00 3.01
6135 8428 5.495640 ACTGGACCAATTCTCTTCTCAATC 58.504 41.667 0.00 0.00 0.00 2.67
6137 8430 4.982241 ACTGGACCAATTCTCTTCTCAA 57.018 40.909 0.00 0.00 0.00 3.02
6138 8431 4.505566 CCAACTGGACCAATTCTCTTCTCA 60.506 45.833 0.00 0.00 37.39 3.27
6139 8432 4.006319 CCAACTGGACCAATTCTCTTCTC 58.994 47.826 0.00 0.00 37.39 2.87
6140 8433 3.245052 CCCAACTGGACCAATTCTCTTCT 60.245 47.826 0.00 0.00 37.39 2.85
6141 8434 3.084786 CCCAACTGGACCAATTCTCTTC 58.915 50.000 0.00 0.00 37.39 2.87
6146 8439 1.616994 CCTCCCCAACTGGACCAATTC 60.617 57.143 0.00 0.00 37.39 2.17
6160 8458 4.111053 GGCCCGACTTTCCTCCCC 62.111 72.222 0.00 0.00 0.00 4.81
6162 8460 4.111053 GGGGCCCGACTTTCCTCC 62.111 72.222 17.79 0.00 0.00 4.30
6179 8477 1.684450 ACCGGGTTTTGTAAGGCTTTG 59.316 47.619 4.45 0.00 0.00 2.77
6193 8491 1.335132 AATCTGCATCGGTACCGGGT 61.335 55.000 32.80 19.60 40.25 5.28
6426 8776 2.124403 GCCATGGGAGAGCACTGG 60.124 66.667 15.13 0.00 0.00 4.00
6427 8777 2.513204 CGCCATGGGAGAGCACTG 60.513 66.667 15.13 0.00 0.00 3.66
6428 8778 2.293318 TTCGCCATGGGAGAGCACT 61.293 57.895 15.13 0.00 32.27 4.40
6429 8779 2.109126 GTTCGCCATGGGAGAGCAC 61.109 63.158 15.13 0.85 33.55 4.40
6430 8780 2.244117 GAGTTCGCCATGGGAGAGCA 62.244 60.000 15.13 0.00 35.48 4.26
6543 8898 2.267324 GTGCAGGAGGAGAGGTGC 59.733 66.667 0.00 0.00 36.42 5.01
6563 8918 1.318158 GCGGAGGAGGGAGTTAACGA 61.318 60.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.