Multiple sequence alignment - TraesCS6D01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G211100 chr6D 100.000 2756 0 0 1 2756 298208280 298205525 0.000000e+00 5090.0
1 TraesCS6D01G211100 chr6D 94.010 768 37 5 997 1755 298444812 298444045 0.000000e+00 1155.0
2 TraesCS6D01G211100 chr6D 89.545 880 49 12 885 1755 297490021 297489176 0.000000e+00 1075.0
3 TraesCS6D01G211100 chr6D 91.191 806 37 13 957 1755 298399366 298398588 0.000000e+00 1064.0
4 TraesCS6D01G211100 chr6D 87.571 177 20 2 2122 2297 297487721 297487546 1.290000e-48 204.0
5 TraesCS6D01G211100 chr6D 80.588 170 25 2 1756 1917 414108251 414108420 1.040000e-24 124.0
6 TraesCS6D01G211100 chr6D 93.846 65 3 1 885 949 296993637 296993574 2.260000e-16 97.1
7 TraesCS6D01G211100 chr6A 93.184 1335 71 8 609 1928 421225676 421227005 0.000000e+00 1943.0
8 TraesCS6D01G211100 chr6A 89.625 1041 57 20 735 1755 421367625 421368634 0.000000e+00 1277.0
9 TraesCS6D01G211100 chr6A 93.409 789 34 8 983 1756 420973695 420974480 0.000000e+00 1153.0
10 TraesCS6D01G211100 chr6A 91.909 791 43 11 983 1755 421102751 421103538 0.000000e+00 1086.0
11 TraesCS6D01G211100 chr6A 89.197 685 67 4 2067 2744 421255593 421256277 0.000000e+00 848.0
12 TraesCS6D01G211100 chr6A 80.874 366 38 8 185 518 94271237 94270872 2.720000e-65 259.0
13 TraesCS6D01G211100 chr6A 96.364 110 4 0 1 110 421224374 421224483 6.060000e-42 182.0
14 TraesCS6D01G211100 chr6A 91.954 87 6 1 433 518 20547221 20547307 1.340000e-23 121.0
15 TraesCS6D01G211100 chr6A 82.716 81 14 0 2351 2431 188451830 188451910 3.810000e-09 73.1
16 TraesCS6D01G211100 chr6B 93.782 1174 56 12 594 1755 461848671 461847503 0.000000e+00 1748.0
17 TraesCS6D01G211100 chr6B 94.641 765 35 3 997 1755 461961868 461961104 0.000000e+00 1181.0
18 TraesCS6D01G211100 chr6B 91.739 811 51 12 957 1755 461903713 461902907 0.000000e+00 1112.0
19 TraesCS6D01G211100 chr6B 90.162 681 52 12 2073 2744 461845549 461844875 0.000000e+00 872.0
20 TraesCS6D01G211100 chr6B 89.668 271 25 1 163 430 219773761 219774031 2.630000e-90 342.0
21 TraesCS6D01G211100 chr6B 80.909 110 20 1 2323 2431 255093057 255093166 4.890000e-13 86.1
22 TraesCS6D01G211100 chr6B 87.273 55 6 1 2014 2067 673623962 673624016 8.240000e-06 62.1
23 TraesCS6D01G211100 chr2B 86.992 369 31 8 166 518 659912242 659911875 1.540000e-107 399.0
24 TraesCS6D01G211100 chr2B 92.045 88 5 2 1926 2011 556296064 556296151 3.730000e-24 122.0
25 TraesCS6D01G211100 chr2B 91.463 82 5 1 1932 2011 158323181 158323262 8.070000e-21 111.0
26 TraesCS6D01G211100 chrUn 85.166 391 39 8 146 518 26523895 26523506 1.550000e-102 383.0
27 TraesCS6D01G211100 chr2D 81.166 446 74 8 2307 2744 358650236 358649793 1.570000e-92 350.0
28 TraesCS6D01G211100 chr2D 93.182 88 5 1 432 518 196225444 196225357 8.010000e-26 128.0
29 TraesCS6D01G211100 chr2D 94.118 51 3 0 2010 2060 649594111 649594061 8.180000e-11 78.7
30 TraesCS6D01G211100 chr4B 90.299 268 23 1 166 430 98321988 98321721 5.650000e-92 348.0
31 TraesCS6D01G211100 chr4B 89.299 271 26 1 163 430 552617839 552618109 1.220000e-88 337.0
32 TraesCS6D01G211100 chr7B 89.668 271 25 1 163 430 122128269 122128539 2.630000e-90 342.0
33 TraesCS6D01G211100 chr5B 89.668 271 25 1 163 430 323584228 323584498 2.630000e-90 342.0
34 TraesCS6D01G211100 chr5B 78.009 432 78 13 2322 2744 183353451 183353874 3.520000e-64 255.0
35 TraesCS6D01G211100 chr5B 95.745 47 2 0 2014 2060 563468075 563468121 2.940000e-10 76.8
36 TraesCS6D01G211100 chr4D 89.925 268 23 3 166 430 57150867 57150601 2.630000e-90 342.0
37 TraesCS6D01G211100 chr4D 92.771 83 4 2 1930 2011 45343909 45343990 4.820000e-23 119.0
38 TraesCS6D01G211100 chr4D 92.771 83 5 1 433 514 380259835 380259753 4.820000e-23 119.0
39 TraesCS6D01G211100 chr4D 89.655 87 8 1 433 518 203460697 203460783 2.900000e-20 110.0
40 TraesCS6D01G211100 chr3B 89.552 268 25 1 166 430 582121674 582121407 1.220000e-88 337.0
41 TraesCS6D01G211100 chr1D 81.490 416 63 11 2304 2712 277334681 277335089 2.050000e-86 329.0
42 TraesCS6D01G211100 chr1A 80.278 431 70 12 2304 2727 349996207 349996629 7.410000e-81 311.0
43 TraesCS6D01G211100 chr2A 78.472 432 66 13 2322 2744 171880161 171880574 9.790000e-65 257.0
44 TraesCS6D01G211100 chr2A 92.771 83 5 1 433 514 744952711 744952629 4.820000e-23 119.0
45 TraesCS6D01G211100 chr2A 100.000 60 0 0 1952 2011 83581284 83581225 8.070000e-21 111.0
46 TraesCS6D01G211100 chr2A 89.831 59 5 1 1790 1848 508731673 508731730 1.060000e-09 75.0
47 TraesCS6D01G211100 chr3D 80.233 344 53 11 2411 2744 142498650 142498312 7.620000e-61 244.0
48 TraesCS6D01G211100 chr3D 75.439 456 88 19 2304 2744 367378337 367378783 1.670000e-47 200.0
49 TraesCS6D01G211100 chr3D 91.463 82 5 2 1932 2011 564484695 564484614 8.070000e-21 111.0
50 TraesCS6D01G211100 chr3D 91.139 79 7 0 1933 2011 36573938 36574016 1.040000e-19 108.0
51 TraesCS6D01G211100 chr5A 93.103 87 5 1 433 518 363866794 363866708 2.880000e-25 126.0
52 TraesCS6D01G211100 chr5A 89.655 87 6 3 1927 2011 560479519 560479434 1.040000e-19 108.0
53 TraesCS6D01G211100 chr7D 92.683 82 4 1 1932 2011 18591639 18591720 1.730000e-22 117.0
54 TraesCS6D01G211100 chr7D 92.593 81 5 1 1932 2011 80371795 80371875 6.240000e-22 115.0
55 TraesCS6D01G211100 chr4A 90.805 87 7 1 433 518 86599707 86599793 6.240000e-22 115.0
56 TraesCS6D01G211100 chr4A 91.667 48 2 2 2014 2060 281900713 281900667 6.370000e-07 65.8
57 TraesCS6D01G211100 chr7A 91.566 83 6 1 433 514 596019631 596019713 2.240000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G211100 chr6D 298205525 298208280 2755 True 5090.0 5090 100.000 1 2756 1 chr6D.!!$R2 2755
1 TraesCS6D01G211100 chr6D 298444045 298444812 767 True 1155.0 1155 94.010 997 1755 1 chr6D.!!$R4 758
2 TraesCS6D01G211100 chr6D 298398588 298399366 778 True 1064.0 1064 91.191 957 1755 1 chr6D.!!$R3 798
3 TraesCS6D01G211100 chr6D 297487546 297490021 2475 True 639.5 1075 88.558 885 2297 2 chr6D.!!$R5 1412
4 TraesCS6D01G211100 chr6A 421367625 421368634 1009 False 1277.0 1277 89.625 735 1755 1 chr6A.!!$F6 1020
5 TraesCS6D01G211100 chr6A 420973695 420974480 785 False 1153.0 1153 93.409 983 1756 1 chr6A.!!$F3 773
6 TraesCS6D01G211100 chr6A 421102751 421103538 787 False 1086.0 1086 91.909 983 1755 1 chr6A.!!$F4 772
7 TraesCS6D01G211100 chr6A 421224374 421227005 2631 False 1062.5 1943 94.774 1 1928 2 chr6A.!!$F7 1927
8 TraesCS6D01G211100 chr6A 421255593 421256277 684 False 848.0 848 89.197 2067 2744 1 chr6A.!!$F5 677
9 TraesCS6D01G211100 chr6B 461844875 461848671 3796 True 1310.0 1748 91.972 594 2744 2 chr6B.!!$R3 2150
10 TraesCS6D01G211100 chr6B 461961104 461961868 764 True 1181.0 1181 94.641 997 1755 1 chr6B.!!$R2 758
11 TraesCS6D01G211100 chr6B 461902907 461903713 806 True 1112.0 1112 91.739 957 1755 1 chr6B.!!$R1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 1005 0.038744 AGAGGTGTTTGGATGGCAGG 59.961 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 4855 0.109532 TCCAACAAGCCGACCATTCA 59.89 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 3.287867 AATGAAGTATCCTGGTGGCTG 57.712 47.619 0.00 0.00 0.00 4.85
111 112 0.253044 TGAAGTATCCTGGTGGCTGC 59.747 55.000 0.00 0.00 0.00 5.25
112 113 0.811616 GAAGTATCCTGGTGGCTGCG 60.812 60.000 0.00 0.00 0.00 5.18
113 114 1.553690 AAGTATCCTGGTGGCTGCGT 61.554 55.000 0.00 0.00 0.00 5.24
114 115 1.815421 GTATCCTGGTGGCTGCGTG 60.815 63.158 0.00 0.00 0.00 5.34
115 116 3.030168 TATCCTGGTGGCTGCGTGG 62.030 63.158 0.00 0.00 0.00 4.94
144 891 4.723309 ACTTGAGATCTCCATATTTGGGC 58.277 43.478 20.03 0.00 43.81 5.36
162 909 7.875327 TTTGGGCTTCCAGTAATATAAAGTC 57.125 36.000 0.00 0.00 42.30 3.01
163 910 5.937111 TGGGCTTCCAGTAATATAAAGTCC 58.063 41.667 0.00 0.00 41.15 3.85
164 911 5.430417 TGGGCTTCCAGTAATATAAAGTCCA 59.570 40.000 2.78 2.78 46.46 4.02
165 912 6.102615 TGGGCTTCCAGTAATATAAAGTCCAT 59.897 38.462 2.78 0.00 44.46 3.41
166 913 6.431234 GGGCTTCCAGTAATATAAAGTCCATG 59.569 42.308 0.00 0.00 40.60 3.66
167 914 6.998673 GGCTTCCAGTAATATAAAGTCCATGT 59.001 38.462 0.00 0.00 0.00 3.21
168 915 7.502561 GGCTTCCAGTAATATAAAGTCCATGTT 59.497 37.037 0.00 0.00 0.00 2.71
169 916 8.903820 GCTTCCAGTAATATAAAGTCCATGTTT 58.096 33.333 0.00 0.00 0.00 2.83
171 918 9.967451 TTCCAGTAATATAAAGTCCATGTTTGA 57.033 29.630 0.00 0.00 0.00 2.69
172 919 9.967451 TCCAGTAATATAAAGTCCATGTTTGAA 57.033 29.630 0.00 0.00 0.00 2.69
183 930 9.574516 AAAGTCCATGTTTGAATACTCTAACTT 57.425 29.630 0.62 0.00 37.92 2.66
185 932 9.877178 AGTCCATGTTTGAATACTCTAACTTAG 57.123 33.333 0.62 0.00 37.92 2.18
186 933 9.654663 GTCCATGTTTGAATACTCTAACTTAGT 57.345 33.333 0.62 0.00 37.92 2.24
231 978 9.924650 TCTAACAAACTAATCCTGAACTAACTC 57.075 33.333 0.00 0.00 0.00 3.01
232 979 9.930693 CTAACAAACTAATCCTGAACTAACTCT 57.069 33.333 0.00 0.00 0.00 3.24
235 982 9.708092 ACAAACTAATCCTGAACTAACTCTAAC 57.292 33.333 0.00 0.00 0.00 2.34
236 983 9.152595 CAAACTAATCCTGAACTAACTCTAACC 57.847 37.037 0.00 0.00 0.00 2.85
237 984 8.431910 AACTAATCCTGAACTAACTCTAACCA 57.568 34.615 0.00 0.00 0.00 3.67
238 985 8.431910 ACTAATCCTGAACTAACTCTAACCAA 57.568 34.615 0.00 0.00 0.00 3.67
239 986 8.877195 ACTAATCCTGAACTAACTCTAACCAAA 58.123 33.333 0.00 0.00 0.00 3.28
240 987 9.372369 CTAATCCTGAACTAACTCTAACCAAAG 57.628 37.037 0.00 0.00 0.00 2.77
241 988 6.989155 TCCTGAACTAACTCTAACCAAAGA 57.011 37.500 0.00 0.00 0.00 2.52
243 990 6.014499 TCCTGAACTAACTCTAACCAAAGAGG 60.014 42.308 5.90 0.00 46.11 3.69
255 1002 2.730550 CAAAGAGGTGTTTGGATGGC 57.269 50.000 0.00 0.00 34.34 4.40
256 1003 1.962807 CAAAGAGGTGTTTGGATGGCA 59.037 47.619 0.00 0.00 34.34 4.92
257 1004 1.915141 AAGAGGTGTTTGGATGGCAG 58.085 50.000 0.00 0.00 0.00 4.85
258 1005 0.038744 AGAGGTGTTTGGATGGCAGG 59.961 55.000 0.00 0.00 0.00 4.85
259 1006 0.967380 GAGGTGTTTGGATGGCAGGG 60.967 60.000 0.00 0.00 0.00 4.45
260 1007 1.228862 GGTGTTTGGATGGCAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
261 1008 0.831711 GGTGTTTGGATGGCAGGGTT 60.832 55.000 0.00 0.00 0.00 4.11
262 1009 1.549037 GGTGTTTGGATGGCAGGGTTA 60.549 52.381 0.00 0.00 0.00 2.85
263 1010 1.818674 GTGTTTGGATGGCAGGGTTAG 59.181 52.381 0.00 0.00 0.00 2.34
264 1011 1.707989 TGTTTGGATGGCAGGGTTAGA 59.292 47.619 0.00 0.00 0.00 2.10
265 1012 2.311542 TGTTTGGATGGCAGGGTTAGAT 59.688 45.455 0.00 0.00 0.00 1.98
266 1013 2.689983 GTTTGGATGGCAGGGTTAGATG 59.310 50.000 0.00 0.00 0.00 2.90
267 1014 1.891933 TGGATGGCAGGGTTAGATGA 58.108 50.000 0.00 0.00 0.00 2.92
268 1015 2.204463 TGGATGGCAGGGTTAGATGAA 58.796 47.619 0.00 0.00 0.00 2.57
269 1016 2.173356 TGGATGGCAGGGTTAGATGAAG 59.827 50.000 0.00 0.00 0.00 3.02
270 1017 2.225467 GATGGCAGGGTTAGATGAAGC 58.775 52.381 0.00 0.00 34.62 3.86
271 1018 0.107703 TGGCAGGGTTAGATGAAGCG 60.108 55.000 0.00 0.00 36.33 4.68
272 1019 1.440145 GGCAGGGTTAGATGAAGCGC 61.440 60.000 0.00 0.00 36.33 5.92
273 1020 1.766143 GCAGGGTTAGATGAAGCGCG 61.766 60.000 0.00 0.00 36.33 6.86
274 1021 1.144057 AGGGTTAGATGAAGCGCGG 59.856 57.895 8.83 0.00 36.33 6.46
275 1022 1.143183 GGGTTAGATGAAGCGCGGA 59.857 57.895 8.83 0.00 36.33 5.54
276 1023 0.249911 GGGTTAGATGAAGCGCGGAT 60.250 55.000 8.83 0.00 36.33 4.18
277 1024 1.000506 GGGTTAGATGAAGCGCGGATA 59.999 52.381 8.83 0.00 36.33 2.59
278 1025 2.059541 GGTTAGATGAAGCGCGGATAC 58.940 52.381 8.83 0.00 0.00 2.24
290 1037 3.537874 GGATACGGTGAGGCGCCT 61.538 66.667 33.48 33.48 0.00 5.52
291 1038 2.499685 GATACGGTGAGGCGCCTT 59.500 61.111 33.34 17.45 0.00 4.35
292 1039 1.591863 GATACGGTGAGGCGCCTTC 60.592 63.158 33.34 25.24 0.00 3.46
293 1040 2.292794 GATACGGTGAGGCGCCTTCA 62.293 60.000 33.34 25.57 0.00 3.02
294 1041 1.686325 ATACGGTGAGGCGCCTTCAT 61.686 55.000 33.34 19.29 0.00 2.57
295 1042 2.572095 TACGGTGAGGCGCCTTCATG 62.572 60.000 33.34 24.19 0.00 3.07
296 1043 2.825836 GGTGAGGCGCCTTCATGG 60.826 66.667 33.34 0.00 39.35 3.66
297 1044 2.825836 GTGAGGCGCCTTCATGGG 60.826 66.667 33.34 0.00 36.00 4.00
305 1052 4.776322 CCTTCATGGGCGGTGCGA 62.776 66.667 0.00 0.00 0.00 5.10
306 1053 3.197790 CTTCATGGGCGGTGCGAG 61.198 66.667 0.00 0.00 0.00 5.03
307 1054 3.664025 CTTCATGGGCGGTGCGAGA 62.664 63.158 0.00 0.00 0.00 4.04
308 1055 3.664025 TTCATGGGCGGTGCGAGAG 62.664 63.158 0.00 0.00 0.00 3.20
313 1060 4.821589 GGCGGTGCGAGAGGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
314 1061 4.821589 GCGGTGCGAGAGGGAAGG 62.822 72.222 0.00 0.00 0.00 3.46
315 1062 3.068691 CGGTGCGAGAGGGAAGGA 61.069 66.667 0.00 0.00 0.00 3.36
316 1063 2.896443 GGTGCGAGAGGGAAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
317 1064 2.726351 GGTGCGAGAGGGAAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
318 1065 2.364317 TGCGAGAGGGAAGGAGGG 60.364 66.667 0.00 0.00 0.00 4.30
319 1066 2.042843 GCGAGAGGGAAGGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
320 1067 2.131067 GCGAGAGGGAAGGAGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
321 1068 1.615814 CGAGAGGGAAGGAGGGAGA 59.384 63.158 0.00 0.00 0.00 3.71
322 1069 0.467290 CGAGAGGGAAGGAGGGAGAG 60.467 65.000 0.00 0.00 0.00 3.20
323 1070 0.105709 GAGAGGGAAGGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
324 1071 0.556380 AGAGGGAAGGAGGGAGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
325 1072 0.397957 GAGGGAAGGAGGGAGAGGAC 60.398 65.000 0.00 0.00 0.00 3.85
326 1073 1.758906 GGGAAGGAGGGAGAGGACG 60.759 68.421 0.00 0.00 0.00 4.79
327 1074 1.306970 GGAAGGAGGGAGAGGACGA 59.693 63.158 0.00 0.00 0.00 4.20
328 1075 0.324460 GGAAGGAGGGAGAGGACGAA 60.324 60.000 0.00 0.00 0.00 3.85
329 1076 1.558233 GAAGGAGGGAGAGGACGAAA 58.442 55.000 0.00 0.00 0.00 3.46
330 1077 1.900486 GAAGGAGGGAGAGGACGAAAA 59.100 52.381 0.00 0.00 0.00 2.29
331 1078 1.562783 AGGAGGGAGAGGACGAAAAG 58.437 55.000 0.00 0.00 0.00 2.27
332 1079 0.108089 GGAGGGAGAGGACGAAAAGC 60.108 60.000 0.00 0.00 0.00 3.51
333 1080 0.899019 GAGGGAGAGGACGAAAAGCT 59.101 55.000 0.00 0.00 0.00 3.74
334 1081 1.276705 GAGGGAGAGGACGAAAAGCTT 59.723 52.381 0.00 0.00 0.00 3.74
335 1082 1.276705 AGGGAGAGGACGAAAAGCTTC 59.723 52.381 0.00 0.00 0.00 3.86
336 1083 1.002087 GGGAGAGGACGAAAAGCTTCA 59.998 52.381 0.00 0.00 0.00 3.02
337 1084 2.550208 GGGAGAGGACGAAAAGCTTCAA 60.550 50.000 0.00 0.00 0.00 2.69
338 1085 2.739379 GGAGAGGACGAAAAGCTTCAAG 59.261 50.000 0.00 0.00 0.00 3.02
339 1086 2.739379 GAGAGGACGAAAAGCTTCAAGG 59.261 50.000 0.00 0.00 0.00 3.61
340 1087 2.368875 AGAGGACGAAAAGCTTCAAGGA 59.631 45.455 0.00 0.00 0.00 3.36
341 1088 3.139077 GAGGACGAAAAGCTTCAAGGAA 58.861 45.455 0.00 0.00 0.00 3.36
342 1089 3.142174 AGGACGAAAAGCTTCAAGGAAG 58.858 45.455 0.00 1.67 42.03 3.46
343 1090 2.879026 GGACGAAAAGCTTCAAGGAAGT 59.121 45.455 0.00 0.00 41.27 3.01
344 1091 3.304057 GGACGAAAAGCTTCAAGGAAGTG 60.304 47.826 0.00 0.00 41.27 3.16
345 1092 2.618709 ACGAAAAGCTTCAAGGAAGTGG 59.381 45.455 0.00 0.00 41.27 4.00
346 1093 2.030805 CGAAAAGCTTCAAGGAAGTGGG 60.031 50.000 0.00 0.00 41.27 4.61
347 1094 2.001076 AAAGCTTCAAGGAAGTGGGG 57.999 50.000 0.00 0.00 41.27 4.96
348 1095 1.149101 AAGCTTCAAGGAAGTGGGGA 58.851 50.000 7.71 0.00 41.27 4.81
349 1096 1.149101 AGCTTCAAGGAAGTGGGGAA 58.851 50.000 7.71 0.00 41.27 3.97
350 1097 1.074566 AGCTTCAAGGAAGTGGGGAAG 59.925 52.381 7.71 0.00 41.27 3.46
351 1098 1.888391 GCTTCAAGGAAGTGGGGAAGG 60.888 57.143 7.71 0.00 41.27 3.46
352 1099 1.705186 CTTCAAGGAAGTGGGGAAGGA 59.295 52.381 0.00 0.00 35.21 3.36
353 1100 2.059756 TCAAGGAAGTGGGGAAGGAT 57.940 50.000 0.00 0.00 0.00 3.24
354 1101 1.916181 TCAAGGAAGTGGGGAAGGATC 59.084 52.381 0.00 0.00 0.00 3.36
355 1102 1.918957 CAAGGAAGTGGGGAAGGATCT 59.081 52.381 0.00 0.00 0.00 2.75
356 1103 1.589414 AGGAAGTGGGGAAGGATCTG 58.411 55.000 0.00 0.00 0.00 2.90
357 1104 0.106967 GGAAGTGGGGAAGGATCTGC 60.107 60.000 0.00 0.00 0.00 4.26
358 1105 0.915364 GAAGTGGGGAAGGATCTGCT 59.085 55.000 0.00 0.00 0.00 4.24
359 1106 0.622665 AAGTGGGGAAGGATCTGCTG 59.377 55.000 0.00 0.00 0.00 4.41
360 1107 0.548682 AGTGGGGAAGGATCTGCTGT 60.549 55.000 0.00 0.00 0.00 4.40
361 1108 0.393537 GTGGGGAAGGATCTGCTGTG 60.394 60.000 0.00 0.00 0.00 3.66
362 1109 1.225704 GGGGAAGGATCTGCTGTGG 59.774 63.158 0.00 0.00 0.00 4.17
363 1110 1.225704 GGGAAGGATCTGCTGTGGG 59.774 63.158 0.00 0.00 0.00 4.61
364 1111 1.225704 GGAAGGATCTGCTGTGGGG 59.774 63.158 0.00 0.00 0.00 4.96
365 1112 1.274703 GGAAGGATCTGCTGTGGGGA 61.275 60.000 0.00 0.00 0.00 4.81
366 1113 0.179936 GAAGGATCTGCTGTGGGGAG 59.820 60.000 0.00 0.00 34.52 4.30
367 1114 0.252881 AAGGATCTGCTGTGGGGAGA 60.253 55.000 0.00 0.00 46.08 3.71
368 1115 0.690411 AGGATCTGCTGTGGGGAGAG 60.690 60.000 0.00 0.00 45.27 3.20
369 1116 1.145819 GATCTGCTGTGGGGAGAGC 59.854 63.158 0.00 0.00 45.27 4.09
370 1117 2.641439 GATCTGCTGTGGGGAGAGCG 62.641 65.000 0.00 0.00 45.27 5.03
371 1118 3.385384 CTGCTGTGGGGAGAGCGA 61.385 66.667 0.00 0.00 38.09 4.93
372 1119 3.368190 CTGCTGTGGGGAGAGCGAG 62.368 68.421 0.00 0.00 38.09 5.03
373 1120 3.071206 GCTGTGGGGAGAGCGAGA 61.071 66.667 0.00 0.00 0.00 4.04
374 1121 3.074999 GCTGTGGGGAGAGCGAGAG 62.075 68.421 0.00 0.00 0.00 3.20
375 1122 1.379176 CTGTGGGGAGAGCGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
376 1123 0.967887 CTGTGGGGAGAGCGAGAGAA 60.968 60.000 0.00 0.00 0.00 2.87
377 1124 0.541998 TGTGGGGAGAGCGAGAGAAA 60.542 55.000 0.00 0.00 0.00 2.52
378 1125 0.608640 GTGGGGAGAGCGAGAGAAAA 59.391 55.000 0.00 0.00 0.00 2.29
379 1126 1.002087 GTGGGGAGAGCGAGAGAAAAA 59.998 52.381 0.00 0.00 0.00 1.94
380 1127 1.276421 TGGGGAGAGCGAGAGAAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
381 1128 1.550976 GGGGAGAGCGAGAGAAAAAGA 59.449 52.381 0.00 0.00 0.00 2.52
382 1129 2.169561 GGGGAGAGCGAGAGAAAAAGAT 59.830 50.000 0.00 0.00 0.00 2.40
383 1130 3.194062 GGGAGAGCGAGAGAAAAAGATG 58.806 50.000 0.00 0.00 0.00 2.90
384 1131 3.368948 GGGAGAGCGAGAGAAAAAGATGT 60.369 47.826 0.00 0.00 0.00 3.06
385 1132 4.249661 GGAGAGCGAGAGAAAAAGATGTT 58.750 43.478 0.00 0.00 0.00 2.71
386 1133 4.693095 GGAGAGCGAGAGAAAAAGATGTTT 59.307 41.667 0.00 0.00 0.00 2.83
387 1134 5.180304 GGAGAGCGAGAGAAAAAGATGTTTT 59.820 40.000 0.00 0.00 37.48 2.43
388 1135 6.293680 GGAGAGCGAGAGAAAAAGATGTTTTT 60.294 38.462 12.70 12.70 46.44 1.94
413 1160 9.886132 TTTAGTGGTCATAAGAAGAACTAATCC 57.114 33.333 0.00 0.00 31.14 3.01
414 1161 7.496346 AGTGGTCATAAGAAGAACTAATCCA 57.504 36.000 0.00 0.00 0.00 3.41
415 1162 7.918076 AGTGGTCATAAGAAGAACTAATCCAA 58.082 34.615 0.00 0.00 0.00 3.53
416 1163 8.383175 AGTGGTCATAAGAAGAACTAATCCAAA 58.617 33.333 0.00 0.00 0.00 3.28
417 1164 9.178758 GTGGTCATAAGAAGAACTAATCCAAAT 57.821 33.333 0.00 0.00 0.00 2.32
443 1190 8.940397 AAGAATCTCTTGAAATCTAACCCAAA 57.060 30.769 0.00 0.00 34.98 3.28
444 1191 8.341892 AGAATCTCTTGAAATCTAACCCAAAC 57.658 34.615 0.00 0.00 0.00 2.93
445 1192 8.166726 AGAATCTCTTGAAATCTAACCCAAACT 58.833 33.333 0.00 0.00 0.00 2.66
446 1193 9.449719 GAATCTCTTGAAATCTAACCCAAACTA 57.550 33.333 0.00 0.00 0.00 2.24
447 1194 9.807921 AATCTCTTGAAATCTAACCCAAACTAA 57.192 29.630 0.00 0.00 0.00 2.24
448 1195 8.617290 TCTCTTGAAATCTAACCCAAACTAAC 57.383 34.615 0.00 0.00 0.00 2.34
449 1196 7.664318 TCTCTTGAAATCTAACCCAAACTAACC 59.336 37.037 0.00 0.00 0.00 2.85
450 1197 6.717997 TCTTGAAATCTAACCCAAACTAACCC 59.282 38.462 0.00 0.00 0.00 4.11
451 1198 6.208840 TGAAATCTAACCCAAACTAACCCT 57.791 37.500 0.00 0.00 0.00 4.34
452 1199 6.616577 TGAAATCTAACCCAAACTAACCCTT 58.383 36.000 0.00 0.00 0.00 3.95
453 1200 6.717997 TGAAATCTAACCCAAACTAACCCTTC 59.282 38.462 0.00 0.00 0.00 3.46
454 1201 6.464530 AATCTAACCCAAACTAACCCTTCT 57.535 37.500 0.00 0.00 0.00 2.85
455 1202 5.237236 TCTAACCCAAACTAACCCTTCTG 57.763 43.478 0.00 0.00 0.00 3.02
456 1203 3.965470 AACCCAAACTAACCCTTCTGT 57.035 42.857 0.00 0.00 0.00 3.41
457 1204 3.965470 ACCCAAACTAACCCTTCTGTT 57.035 42.857 0.00 0.00 0.00 3.16
458 1205 4.259933 ACCCAAACTAACCCTTCTGTTT 57.740 40.909 0.00 0.00 33.56 2.83
459 1206 3.958147 ACCCAAACTAACCCTTCTGTTTG 59.042 43.478 9.59 9.59 44.90 2.93
460 1207 4.211920 CCCAAACTAACCCTTCTGTTTGA 58.788 43.478 15.97 0.00 46.90 2.69
461 1208 4.647399 CCCAAACTAACCCTTCTGTTTGAA 59.353 41.667 15.97 0.00 46.90 2.69
462 1209 5.304357 CCCAAACTAACCCTTCTGTTTGAAT 59.696 40.000 15.97 0.00 46.90 2.57
463 1210 6.492087 CCCAAACTAACCCTTCTGTTTGAATA 59.508 38.462 15.97 0.00 46.90 1.75
464 1211 7.178451 CCCAAACTAACCCTTCTGTTTGAATAT 59.822 37.037 15.97 0.00 46.90 1.28
465 1212 8.585018 CCAAACTAACCCTTCTGTTTGAATATT 58.415 33.333 15.97 0.00 46.90 1.28
466 1213 9.981114 CAAACTAACCCTTCTGTTTGAATATTT 57.019 29.630 10.70 0.00 46.90 1.40
472 1219 8.721133 ACCCTTCTGTTTGAATATTTTTAGGT 57.279 30.769 0.00 0.00 33.71 3.08
473 1220 9.154632 ACCCTTCTGTTTGAATATTTTTAGGTT 57.845 29.630 0.00 0.00 33.71 3.50
496 1243 5.899631 AGTTAAGTCCAAACTAACCCAGA 57.100 39.130 0.00 0.00 35.44 3.86
497 1244 5.618236 AGTTAAGTCCAAACTAACCCAGAC 58.382 41.667 0.00 0.00 35.44 3.51
498 1245 5.368816 AGTTAAGTCCAAACTAACCCAGACT 59.631 40.000 0.00 0.00 35.44 3.24
499 1246 6.556116 AGTTAAGTCCAAACTAACCCAGACTA 59.444 38.462 0.00 0.00 35.44 2.59
500 1247 5.899631 AAGTCCAAACTAACCCAGACTAA 57.100 39.130 0.00 0.00 33.62 2.24
501 1248 5.224821 AGTCCAAACTAACCCAGACTAAC 57.775 43.478 0.00 0.00 33.01 2.34
502 1249 4.906060 AGTCCAAACTAACCCAGACTAACT 59.094 41.667 0.00 0.00 33.01 2.24
503 1250 5.011840 AGTCCAAACTAACCCAGACTAACTC 59.988 44.000 0.00 0.00 33.01 3.01
504 1251 4.903049 TCCAAACTAACCCAGACTAACTCA 59.097 41.667 0.00 0.00 0.00 3.41
505 1252 5.367352 TCCAAACTAACCCAGACTAACTCAA 59.633 40.000 0.00 0.00 0.00 3.02
506 1253 5.469084 CCAAACTAACCCAGACTAACTCAAC 59.531 44.000 0.00 0.00 0.00 3.18
507 1254 4.886496 ACTAACCCAGACTAACTCAACC 57.114 45.455 0.00 0.00 0.00 3.77
508 1255 3.581770 ACTAACCCAGACTAACTCAACCC 59.418 47.826 0.00 0.00 0.00 4.11
509 1256 2.112279 ACCCAGACTAACTCAACCCA 57.888 50.000 0.00 0.00 0.00 4.51
510 1257 2.632537 ACCCAGACTAACTCAACCCAT 58.367 47.619 0.00 0.00 0.00 4.00
511 1258 2.305927 ACCCAGACTAACTCAACCCATG 59.694 50.000 0.00 0.00 0.00 3.66
512 1259 2.356125 CCCAGACTAACTCAACCCATGG 60.356 54.545 4.14 4.14 0.00 3.66
513 1260 2.571653 CCAGACTAACTCAACCCATGGA 59.428 50.000 15.22 0.00 0.00 3.41
514 1261 3.600388 CAGACTAACTCAACCCATGGAC 58.400 50.000 15.22 0.00 0.00 4.02
515 1262 2.572104 AGACTAACTCAACCCATGGACC 59.428 50.000 15.22 0.00 0.00 4.46
516 1263 1.633945 ACTAACTCAACCCATGGACCC 59.366 52.381 15.22 0.00 0.00 4.46
517 1264 1.633432 CTAACTCAACCCATGGACCCA 59.367 52.381 15.22 0.00 0.00 4.51
518 1265 0.112412 AACTCAACCCATGGACCCAC 59.888 55.000 15.22 0.00 0.00 4.61
519 1266 1.000896 CTCAACCCATGGACCCACC 60.001 63.158 15.22 0.00 39.54 4.61
950 2023 2.237143 ACGATCCATCCATCACACACTT 59.763 45.455 0.00 0.00 0.00 3.16
1411 2499 0.106519 AGCCAAGAAACCTGCTGTGT 60.107 50.000 0.00 0.00 31.70 3.72
1530 2654 1.655329 CGACTACTCGATGGCCTCC 59.345 63.158 3.32 0.00 43.06 4.30
1760 2893 4.327680 AGTTTGTCACAGATTTAGGCCTC 58.672 43.478 9.68 0.00 0.00 4.70
1765 2898 3.557595 GTCACAGATTTAGGCCTCATTCG 59.442 47.826 9.68 4.01 0.00 3.34
1781 3176 5.122396 CCTCATTCGGTTTGAAGAAAGTAGG 59.878 44.000 0.00 0.00 40.65 3.18
1850 3245 3.825143 AAAATTGTCTTGCCTTGCTGT 57.175 38.095 0.00 0.00 0.00 4.40
1854 3249 1.225855 TGTCTTGCCTTGCTGTTACG 58.774 50.000 0.00 0.00 0.00 3.18
1863 3258 2.725723 CCTTGCTGTTACGCACAAAATG 59.274 45.455 1.85 0.00 40.09 2.32
1866 3261 2.031245 TGCTGTTACGCACAAAATGAGG 60.031 45.455 0.00 0.00 33.87 3.86
1878 3273 6.446318 GCACAAAATGAGGTTTGAGTGAATA 58.554 36.000 4.76 0.00 40.29 1.75
1880 3275 7.086376 CACAAAATGAGGTTTGAGTGAATAGG 58.914 38.462 4.76 0.00 40.29 2.57
1881 3276 6.777580 ACAAAATGAGGTTTGAGTGAATAGGT 59.222 34.615 4.76 0.00 40.29 3.08
1887 3282 7.918076 TGAGGTTTGAGTGAATAGGTAGATTT 58.082 34.615 0.00 0.00 0.00 2.17
1889 3284 7.339482 AGGTTTGAGTGAATAGGTAGATTTCC 58.661 38.462 0.00 0.00 0.00 3.13
1891 3286 7.339482 GTTTGAGTGAATAGGTAGATTTCCCT 58.661 38.462 0.00 0.00 34.74 4.20
1892 3287 6.732896 TGAGTGAATAGGTAGATTTCCCTC 57.267 41.667 0.00 0.00 32.08 4.30
1902 3297 5.770162 AGGTAGATTTCCCTCAAAACACAAG 59.230 40.000 0.00 0.00 0.00 3.16
1905 3300 6.790232 AGATTTCCCTCAAAACACAAGAAA 57.210 33.333 0.00 0.00 0.00 2.52
1940 3335 6.729690 TCTGTGAAATTGATGAAAAAGGGT 57.270 33.333 0.00 0.00 0.00 4.34
1942 3337 6.550854 TCTGTGAAATTGATGAAAAAGGGTCT 59.449 34.615 0.00 0.00 0.00 3.85
1943 3338 6.748132 TGTGAAATTGATGAAAAAGGGTCTC 58.252 36.000 0.00 0.00 0.00 3.36
1944 3339 6.550854 TGTGAAATTGATGAAAAAGGGTCTCT 59.449 34.615 0.00 0.00 0.00 3.10
1945 3340 7.087007 GTGAAATTGATGAAAAAGGGTCTCTC 58.913 38.462 0.00 0.00 0.00 3.20
1946 3341 6.209391 TGAAATTGATGAAAAAGGGTCTCTCC 59.791 38.462 0.00 0.00 0.00 3.71
1947 3342 3.334583 TGATGAAAAAGGGTCTCTCCG 57.665 47.619 0.00 0.00 37.00 4.63
1948 3343 2.010497 GATGAAAAAGGGTCTCTCCGC 58.990 52.381 0.00 0.00 37.00 5.54
1953 3348 4.262617 GAAAAAGGGTCTCTCCGCTTTAT 58.737 43.478 4.04 0.00 36.45 1.40
1954 3349 5.046159 TGAAAAAGGGTCTCTCCGCTTTATA 60.046 40.000 4.04 0.00 36.45 0.98
1956 3351 5.632034 AAAGGGTCTCTCCGCTTTATATT 57.368 39.130 1.93 0.00 36.04 1.28
1958 3353 6.936968 AAGGGTCTCTCCGCTTTATATTAT 57.063 37.500 0.00 0.00 37.00 1.28
1960 3355 8.431910 AAGGGTCTCTCCGCTTTATATTATAA 57.568 34.615 0.00 0.00 37.00 0.98
1961 3356 8.431910 AGGGTCTCTCCGCTTTATATTATAAA 57.568 34.615 8.26 8.26 37.00 1.40
1962 3357 8.877195 AGGGTCTCTCCGCTTTATATTATAAAA 58.123 33.333 9.53 0.00 37.00 1.52
1963 3358 8.933807 GGGTCTCTCCGCTTTATATTATAAAAC 58.066 37.037 9.53 5.29 37.00 2.43
1964 3359 9.485206 GGTCTCTCCGCTTTATATTATAAAACA 57.515 33.333 9.53 0.00 0.00 2.83
1971 3366 9.790389 CCGCTTTATATTATAAAACAACAACCA 57.210 29.630 9.53 0.00 0.00 3.67
1982 3377 6.729391 AAAACAACAACCAACCAATACAAC 57.271 33.333 0.00 0.00 0.00 3.32
1983 3378 4.394439 ACAACAACCAACCAATACAACC 57.606 40.909 0.00 0.00 0.00 3.77
1984 3379 3.769844 ACAACAACCAACCAATACAACCA 59.230 39.130 0.00 0.00 0.00 3.67
1985 3380 4.142049 ACAACAACCAACCAATACAACCAG 60.142 41.667 0.00 0.00 0.00 4.00
1987 3382 2.627699 CAACCAACCAATACAACCAGCT 59.372 45.455 0.00 0.00 0.00 4.24
1988 3383 2.514803 ACCAACCAATACAACCAGCTC 58.485 47.619 0.00 0.00 0.00 4.09
1989 3384 1.468520 CCAACCAATACAACCAGCTCG 59.531 52.381 0.00 0.00 0.00 5.03
1991 3386 0.324943 ACCAATACAACCAGCTCGCT 59.675 50.000 0.00 0.00 0.00 4.93
1992 3387 0.729116 CCAATACAACCAGCTCGCTG 59.271 55.000 11.83 11.83 43.26 5.18
2012 3783 2.658268 GCCGCAGCACAAACAACC 60.658 61.111 0.00 0.00 39.53 3.77
2013 3784 2.353376 CCGCAGCACAAACAACCG 60.353 61.111 0.00 0.00 0.00 4.44
2014 3785 2.407210 CGCAGCACAAACAACCGT 59.593 55.556 0.00 0.00 0.00 4.83
2015 3786 1.644372 CGCAGCACAAACAACCGTA 59.356 52.632 0.00 0.00 0.00 4.02
2024 3795 4.393680 GCACAAACAACCGTATTCCTATGA 59.606 41.667 0.00 0.00 0.00 2.15
2025 3796 5.106475 GCACAAACAACCGTATTCCTATGAA 60.106 40.000 0.00 0.00 34.33 2.57
2026 3797 6.568844 GCACAAACAACCGTATTCCTATGAAA 60.569 38.462 0.00 0.00 33.32 2.69
2029 3800 8.241367 ACAAACAACCGTATTCCTATGAAATTC 58.759 33.333 0.00 0.00 33.32 2.17
2031 3802 5.826208 ACAACCGTATTCCTATGAAATTCCC 59.174 40.000 0.00 0.00 33.32 3.97
2032 3803 4.638304 ACCGTATTCCTATGAAATTCCCG 58.362 43.478 0.00 0.00 33.32 5.14
2035 3806 6.013984 ACCGTATTCCTATGAAATTCCCGTAT 60.014 38.462 0.00 0.00 33.32 3.06
2036 3807 6.312918 CCGTATTCCTATGAAATTCCCGTATG 59.687 42.308 0.00 0.00 33.32 2.39
2037 3808 6.183360 CGTATTCCTATGAAATTCCCGTATGC 60.183 42.308 0.00 0.00 33.32 3.14
2038 3809 3.659786 TCCTATGAAATTCCCGTATGCG 58.340 45.455 0.00 0.00 37.95 4.73
2039 3810 3.070446 TCCTATGAAATTCCCGTATGCGT 59.930 43.478 1.69 0.00 36.15 5.24
2040 3811 3.813166 CCTATGAAATTCCCGTATGCGTT 59.187 43.478 1.69 0.00 36.15 4.84
2045 3816 3.547054 AATTCCCGTATGCGTTTCCTA 57.453 42.857 1.69 0.00 36.15 2.94
2057 3828 2.846693 CGTTTCCTACAAACCGAATGC 58.153 47.619 0.00 0.00 0.00 3.56
2058 3829 2.224549 CGTTTCCTACAAACCGAATGCA 59.775 45.455 0.00 0.00 0.00 3.96
2059 3830 3.119990 CGTTTCCTACAAACCGAATGCAT 60.120 43.478 0.00 0.00 0.00 3.96
2063 4855 4.776349 TCCTACAAACCGAATGCATACAT 58.224 39.130 0.00 0.00 38.49 2.29
2064 4856 4.574421 TCCTACAAACCGAATGCATACATG 59.426 41.667 0.00 0.00 36.36 3.21
2065 4857 4.574421 CCTACAAACCGAATGCATACATGA 59.426 41.667 0.00 0.00 36.36 3.07
2070 4862 3.554934 ACCGAATGCATACATGAATGGT 58.445 40.909 0.00 0.00 36.36 3.55
2071 4863 3.565482 ACCGAATGCATACATGAATGGTC 59.435 43.478 0.00 0.00 36.36 4.02
2087 4890 2.027625 GTCGGCTTGTTGGACGGAG 61.028 63.158 0.00 0.00 38.41 4.63
2088 4891 2.742372 CGGCTTGTTGGACGGAGG 60.742 66.667 0.00 0.00 33.56 4.30
2120 5399 4.421058 CTCATGTGCAAGATTGATTGTGG 58.579 43.478 0.00 0.00 32.56 4.17
2167 5446 4.636249 CTTGTAGAGAGGCTGTCAAACTT 58.364 43.478 14.66 0.00 0.00 2.66
2174 5453 0.380378 GGCTGTCAAACTTGCGACAA 59.620 50.000 0.00 0.00 41.39 3.18
2175 5454 1.466855 GCTGTCAAACTTGCGACAAC 58.533 50.000 0.00 0.00 41.39 3.32
2198 5478 4.454403 GAGAAACACTCGAAAACTCCAC 57.546 45.455 0.00 0.00 35.84 4.02
2206 5486 0.592637 CGAAAACTCCACTGCATGCA 59.407 50.000 21.29 21.29 0.00 3.96
2208 5488 1.881973 GAAAACTCCACTGCATGCAGA 59.118 47.619 45.50 27.30 46.30 4.26
2253 5534 4.872691 CCTCAGTGTCACATTGGATCTTAC 59.127 45.833 5.62 0.00 0.00 2.34
2254 5535 5.482006 CTCAGTGTCACATTGGATCTTACA 58.518 41.667 5.62 0.00 0.00 2.41
2297 5580 7.443272 CCAACATATTATGTGAGCTTGAGATGA 59.557 37.037 10.01 0.00 44.07 2.92
2321 5604 7.181305 TGAACTTCCTAATGGTGTCCTACATAA 59.819 37.037 0.00 0.00 34.23 1.90
2324 5607 5.535029 TCCTAATGGTGTCCTACATAAGGT 58.465 41.667 0.00 0.00 39.47 3.50
2387 5670 1.133294 CCCCCAAACTACCAACCAGTT 60.133 52.381 0.00 0.00 37.85 3.16
2470 5756 2.430248 AAGGCATGATGTGATGCTCA 57.570 45.000 0.00 0.00 46.74 4.26
2505 5791 2.954318 TCTATGTAACCGACCTAGGTGC 59.046 50.000 22.10 10.15 45.21 5.01
2509 5795 1.274447 GTAACCGACCTAGGTGCAACT 59.726 52.381 22.10 10.34 45.21 3.16
2521 5807 1.272807 GTGCAACTCTAGGTACCCCA 58.727 55.000 8.74 0.00 0.00 4.96
2536 5822 3.406512 ACCCCAGTGTCTCTATAAGCT 57.593 47.619 0.00 0.00 0.00 3.74
2617 5903 4.411212 ACCTGTACTTTATACCCCATCCAC 59.589 45.833 0.00 0.00 0.00 4.02
2622 5908 4.108570 ACTTTATACCCCATCCACAGTCA 58.891 43.478 0.00 0.00 0.00 3.41
2628 5914 2.026262 ACCCCATCCACAGTCAATACAC 60.026 50.000 0.00 0.00 0.00 2.90
2637 5923 4.152402 CCACAGTCAATACACTACAAGCAC 59.848 45.833 0.00 0.00 0.00 4.40
2639 5925 2.993899 AGTCAATACACTACAAGCACGC 59.006 45.455 0.00 0.00 0.00 5.34
2640 5926 2.993899 GTCAATACACTACAAGCACGCT 59.006 45.455 0.00 0.00 0.00 5.07
2712 5998 4.827835 TCTCTTCTCCGTCCTATTACCATG 59.172 45.833 0.00 0.00 0.00 3.66
2715 6001 4.931661 TCTCCGTCCTATTACCATGAAC 57.068 45.455 0.00 0.00 0.00 3.18
2718 6004 2.547218 CCGTCCTATTACCATGAACCCG 60.547 54.545 0.00 0.00 0.00 5.28
2744 6030 2.687566 AGCTTGGGACCCCCTACG 60.688 66.667 8.45 0.00 45.70 3.51
2745 6031 3.793888 GCTTGGGACCCCCTACGG 61.794 72.222 8.45 0.00 45.70 4.02
2746 6032 3.793888 CTTGGGACCCCCTACGGC 61.794 72.222 8.45 0.00 45.70 5.68
2750 6036 4.162009 GGACCCCCTACGGCCCTA 62.162 72.222 0.00 0.00 0.00 3.53
2751 6037 2.203466 GACCCCCTACGGCCCTAT 59.797 66.667 0.00 0.00 0.00 2.57
2752 6038 1.912264 GACCCCCTACGGCCCTATC 60.912 68.421 0.00 0.00 0.00 2.08
2753 6039 2.995574 CCCCCTACGGCCCTATCG 60.996 72.222 0.00 0.00 0.00 2.92
2754 6040 2.116772 CCCCTACGGCCCTATCGA 59.883 66.667 0.00 0.00 0.00 3.59
2755 6041 1.532316 CCCCTACGGCCCTATCGAA 60.532 63.158 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 0.388134 TCTCAAGTAGAACGCCACGC 60.388 55.000 0.00 0.00 0.00 5.34
111 112 2.159366 AGATCTCAAGTAGAACGCCACG 60.159 50.000 0.00 0.00 37.89 4.94
112 113 3.440228 GAGATCTCAAGTAGAACGCCAC 58.560 50.000 18.11 0.00 37.89 5.01
113 114 2.427453 GGAGATCTCAAGTAGAACGCCA 59.573 50.000 23.85 0.00 43.63 5.69
114 115 2.427453 TGGAGATCTCAAGTAGAACGCC 59.573 50.000 23.85 3.51 44.18 5.68
115 116 3.784701 TGGAGATCTCAAGTAGAACGC 57.215 47.619 23.85 3.44 37.89 4.84
116 117 8.291888 CAAATATGGAGATCTCAAGTAGAACG 57.708 38.462 23.85 1.28 37.89 3.95
205 952 9.924650 GAGTTAGTTCAGGATTAGTTTGTTAGA 57.075 33.333 0.00 0.00 0.00 2.10
206 953 9.930693 AGAGTTAGTTCAGGATTAGTTTGTTAG 57.069 33.333 0.00 0.00 0.00 2.34
209 956 9.708092 GTTAGAGTTAGTTCAGGATTAGTTTGT 57.292 33.333 0.00 0.00 0.00 2.83
210 957 9.152595 GGTTAGAGTTAGTTCAGGATTAGTTTG 57.847 37.037 0.00 0.00 0.00 2.93
211 958 8.877195 TGGTTAGAGTTAGTTCAGGATTAGTTT 58.123 33.333 0.00 0.00 0.00 2.66
212 959 8.431910 TGGTTAGAGTTAGTTCAGGATTAGTT 57.568 34.615 0.00 0.00 0.00 2.24
213 960 8.431910 TTGGTTAGAGTTAGTTCAGGATTAGT 57.568 34.615 0.00 0.00 0.00 2.24
214 961 9.372369 CTTTGGTTAGAGTTAGTTCAGGATTAG 57.628 37.037 0.00 0.00 0.00 1.73
215 962 9.096823 TCTTTGGTTAGAGTTAGTTCAGGATTA 57.903 33.333 0.00 0.00 0.00 1.75
216 963 7.974504 TCTTTGGTTAGAGTTAGTTCAGGATT 58.025 34.615 0.00 0.00 0.00 3.01
217 964 7.310734 CCTCTTTGGTTAGAGTTAGTTCAGGAT 60.311 40.741 0.00 0.00 40.04 3.24
218 965 6.014499 CCTCTTTGGTTAGAGTTAGTTCAGGA 60.014 42.308 0.00 0.00 40.04 3.86
219 966 6.166982 CCTCTTTGGTTAGAGTTAGTTCAGG 58.833 44.000 0.00 0.00 40.04 3.86
236 983 1.962807 TGCCATCCAAACACCTCTTTG 59.037 47.619 0.00 0.00 0.00 2.77
237 984 2.242043 CTGCCATCCAAACACCTCTTT 58.758 47.619 0.00 0.00 0.00 2.52
238 985 1.548582 CCTGCCATCCAAACACCTCTT 60.549 52.381 0.00 0.00 0.00 2.85
239 986 0.038744 CCTGCCATCCAAACACCTCT 59.961 55.000 0.00 0.00 0.00 3.69
240 987 0.967380 CCCTGCCATCCAAACACCTC 60.967 60.000 0.00 0.00 0.00 3.85
241 988 1.077265 CCCTGCCATCCAAACACCT 59.923 57.895 0.00 0.00 0.00 4.00
242 989 0.831711 AACCCTGCCATCCAAACACC 60.832 55.000 0.00 0.00 0.00 4.16
243 990 1.818674 CTAACCCTGCCATCCAAACAC 59.181 52.381 0.00 0.00 0.00 3.32
244 991 1.707989 TCTAACCCTGCCATCCAAACA 59.292 47.619 0.00 0.00 0.00 2.83
245 992 2.507407 TCTAACCCTGCCATCCAAAC 57.493 50.000 0.00 0.00 0.00 2.93
246 993 2.580322 TCATCTAACCCTGCCATCCAAA 59.420 45.455 0.00 0.00 0.00 3.28
247 994 2.204463 TCATCTAACCCTGCCATCCAA 58.796 47.619 0.00 0.00 0.00 3.53
248 995 1.891933 TCATCTAACCCTGCCATCCA 58.108 50.000 0.00 0.00 0.00 3.41
249 996 2.856222 CTTCATCTAACCCTGCCATCC 58.144 52.381 0.00 0.00 0.00 3.51
250 997 2.225467 GCTTCATCTAACCCTGCCATC 58.775 52.381 0.00 0.00 0.00 3.51
251 998 1.475751 CGCTTCATCTAACCCTGCCAT 60.476 52.381 0.00 0.00 0.00 4.40
252 999 0.107703 CGCTTCATCTAACCCTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
253 1000 1.440145 GCGCTTCATCTAACCCTGCC 61.440 60.000 0.00 0.00 0.00 4.85
254 1001 1.766143 CGCGCTTCATCTAACCCTGC 61.766 60.000 5.56 0.00 0.00 4.85
255 1002 1.154205 CCGCGCTTCATCTAACCCTG 61.154 60.000 5.56 0.00 0.00 4.45
256 1003 1.144057 CCGCGCTTCATCTAACCCT 59.856 57.895 5.56 0.00 0.00 4.34
257 1004 0.249911 ATCCGCGCTTCATCTAACCC 60.250 55.000 5.56 0.00 0.00 4.11
258 1005 2.059541 GTATCCGCGCTTCATCTAACC 58.940 52.381 5.56 0.00 0.00 2.85
259 1006 1.714460 CGTATCCGCGCTTCATCTAAC 59.286 52.381 5.56 0.00 0.00 2.34
260 1007 1.335597 CCGTATCCGCGCTTCATCTAA 60.336 52.381 5.56 0.00 0.00 2.10
261 1008 0.240145 CCGTATCCGCGCTTCATCTA 59.760 55.000 5.56 0.00 0.00 1.98
262 1009 1.007271 CCGTATCCGCGCTTCATCT 60.007 57.895 5.56 0.00 0.00 2.90
263 1010 1.299926 ACCGTATCCGCGCTTCATC 60.300 57.895 5.56 0.00 0.00 2.92
264 1011 1.591594 CACCGTATCCGCGCTTCAT 60.592 57.895 5.56 0.00 0.00 2.57
265 1012 2.202690 CACCGTATCCGCGCTTCA 60.203 61.111 5.56 0.00 0.00 3.02
266 1013 1.944676 CTCACCGTATCCGCGCTTC 60.945 63.158 5.56 0.00 0.00 3.86
267 1014 2.104331 CTCACCGTATCCGCGCTT 59.896 61.111 5.56 0.00 0.00 4.68
268 1015 3.900892 CCTCACCGTATCCGCGCT 61.901 66.667 5.56 0.00 0.00 5.92
272 1019 4.944372 GGCGCCTCACCGTATCCG 62.944 72.222 22.15 0.00 0.00 4.18
273 1020 2.973180 GAAGGCGCCTCACCGTATCC 62.973 65.000 32.93 6.70 0.00 2.59
274 1021 1.591863 GAAGGCGCCTCACCGTATC 60.592 63.158 32.93 18.35 0.00 2.24
275 1022 1.686325 ATGAAGGCGCCTCACCGTAT 61.686 55.000 32.93 12.84 0.00 3.06
276 1023 2.355986 ATGAAGGCGCCTCACCGTA 61.356 57.895 32.93 12.89 0.00 4.02
277 1024 3.706373 ATGAAGGCGCCTCACCGT 61.706 61.111 32.93 19.91 0.00 4.83
278 1025 3.197790 CATGAAGGCGCCTCACCG 61.198 66.667 32.93 18.59 0.00 4.94
279 1026 2.825836 CCATGAAGGCGCCTCACC 60.826 66.667 32.93 21.85 0.00 4.02
280 1027 2.825836 CCCATGAAGGCGCCTCAC 60.826 66.667 32.93 26.08 35.39 3.51
281 1028 4.802051 GCCCATGAAGGCGCCTCA 62.802 66.667 32.93 27.71 44.57 3.86
288 1035 4.776322 TCGCACCGCCCATGAAGG 62.776 66.667 0.00 0.00 37.03 3.46
289 1036 3.197790 CTCGCACCGCCCATGAAG 61.198 66.667 0.00 0.00 0.00 3.02
290 1037 3.664025 CTCTCGCACCGCCCATGAA 62.664 63.158 0.00 0.00 0.00 2.57
291 1038 4.147449 CTCTCGCACCGCCCATGA 62.147 66.667 0.00 0.00 0.00 3.07
296 1043 4.821589 CTTCCCTCTCGCACCGCC 62.822 72.222 0.00 0.00 0.00 6.13
297 1044 4.821589 CCTTCCCTCTCGCACCGC 62.822 72.222 0.00 0.00 0.00 5.68
298 1045 3.068691 TCCTTCCCTCTCGCACCG 61.069 66.667 0.00 0.00 0.00 4.94
299 1046 2.726351 CCTCCTTCCCTCTCGCACC 61.726 68.421 0.00 0.00 0.00 5.01
300 1047 2.726351 CCCTCCTTCCCTCTCGCAC 61.726 68.421 0.00 0.00 0.00 5.34
301 1048 2.364317 CCCTCCTTCCCTCTCGCA 60.364 66.667 0.00 0.00 0.00 5.10
302 1049 2.042843 TCCCTCCTTCCCTCTCGC 60.043 66.667 0.00 0.00 0.00 5.03
303 1050 0.467290 CTCTCCCTCCTTCCCTCTCG 60.467 65.000 0.00 0.00 0.00 4.04
304 1051 0.105709 CCTCTCCCTCCTTCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
305 1052 0.556380 TCCTCTCCCTCCTTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
306 1053 0.397957 GTCCTCTCCCTCCTTCCCTC 60.398 65.000 0.00 0.00 0.00 4.30
307 1054 1.707200 GTCCTCTCCCTCCTTCCCT 59.293 63.158 0.00 0.00 0.00 4.20
308 1055 1.758906 CGTCCTCTCCCTCCTTCCC 60.759 68.421 0.00 0.00 0.00 3.97
309 1056 0.324460 TTCGTCCTCTCCCTCCTTCC 60.324 60.000 0.00 0.00 0.00 3.46
310 1057 1.558233 TTTCGTCCTCTCCCTCCTTC 58.442 55.000 0.00 0.00 0.00 3.46
311 1058 1.903183 CTTTTCGTCCTCTCCCTCCTT 59.097 52.381 0.00 0.00 0.00 3.36
312 1059 1.562783 CTTTTCGTCCTCTCCCTCCT 58.437 55.000 0.00 0.00 0.00 3.69
313 1060 0.108089 GCTTTTCGTCCTCTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
314 1061 0.899019 AGCTTTTCGTCCTCTCCCTC 59.101 55.000 0.00 0.00 0.00 4.30
315 1062 1.276705 GAAGCTTTTCGTCCTCTCCCT 59.723 52.381 0.00 0.00 0.00 4.20
316 1063 1.002087 TGAAGCTTTTCGTCCTCTCCC 59.998 52.381 0.00 0.00 0.00 4.30
317 1064 2.457366 TGAAGCTTTTCGTCCTCTCC 57.543 50.000 0.00 0.00 0.00 3.71
318 1065 2.739379 CCTTGAAGCTTTTCGTCCTCTC 59.261 50.000 0.00 0.00 0.00 3.20
319 1066 2.368875 TCCTTGAAGCTTTTCGTCCTCT 59.631 45.455 0.00 0.00 0.00 3.69
320 1067 2.767505 TCCTTGAAGCTTTTCGTCCTC 58.232 47.619 0.00 0.00 0.00 3.71
321 1068 2.930826 TCCTTGAAGCTTTTCGTCCT 57.069 45.000 0.00 0.00 0.00 3.85
322 1069 2.879026 ACTTCCTTGAAGCTTTTCGTCC 59.121 45.455 0.00 0.00 42.79 4.79
323 1070 3.304057 CCACTTCCTTGAAGCTTTTCGTC 60.304 47.826 0.00 0.00 42.79 4.20
324 1071 2.618709 CCACTTCCTTGAAGCTTTTCGT 59.381 45.455 0.00 0.00 42.79 3.85
325 1072 2.030805 CCCACTTCCTTGAAGCTTTTCG 60.031 50.000 0.00 0.00 42.79 3.46
326 1073 2.297315 CCCCACTTCCTTGAAGCTTTTC 59.703 50.000 0.00 0.00 42.79 2.29
327 1074 2.091333 TCCCCACTTCCTTGAAGCTTTT 60.091 45.455 0.00 0.00 42.79 2.27
328 1075 1.499007 TCCCCACTTCCTTGAAGCTTT 59.501 47.619 0.00 0.00 42.79 3.51
329 1076 1.149101 TCCCCACTTCCTTGAAGCTT 58.851 50.000 0.00 0.00 42.79 3.74
330 1077 1.074566 CTTCCCCACTTCCTTGAAGCT 59.925 52.381 3.82 0.00 42.79 3.74
331 1078 1.539157 CTTCCCCACTTCCTTGAAGC 58.461 55.000 3.82 0.00 42.79 3.86
332 1079 1.705186 TCCTTCCCCACTTCCTTGAAG 59.295 52.381 2.40 2.40 44.37 3.02
333 1080 1.827792 TCCTTCCCCACTTCCTTGAA 58.172 50.000 0.00 0.00 0.00 2.69
334 1081 1.916181 GATCCTTCCCCACTTCCTTGA 59.084 52.381 0.00 0.00 0.00 3.02
335 1082 1.918957 AGATCCTTCCCCACTTCCTTG 59.081 52.381 0.00 0.00 0.00 3.61
336 1083 1.918957 CAGATCCTTCCCCACTTCCTT 59.081 52.381 0.00 0.00 0.00 3.36
337 1084 1.589414 CAGATCCTTCCCCACTTCCT 58.411 55.000 0.00 0.00 0.00 3.36
338 1085 0.106967 GCAGATCCTTCCCCACTTCC 60.107 60.000 0.00 0.00 0.00 3.46
339 1086 0.915364 AGCAGATCCTTCCCCACTTC 59.085 55.000 0.00 0.00 0.00 3.01
340 1087 0.622665 CAGCAGATCCTTCCCCACTT 59.377 55.000 0.00 0.00 0.00 3.16
341 1088 0.548682 ACAGCAGATCCTTCCCCACT 60.549 55.000 0.00 0.00 0.00 4.00
342 1089 0.393537 CACAGCAGATCCTTCCCCAC 60.394 60.000 0.00 0.00 0.00 4.61
343 1090 1.565390 CCACAGCAGATCCTTCCCCA 61.565 60.000 0.00 0.00 0.00 4.96
344 1091 1.225704 CCACAGCAGATCCTTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
345 1092 1.225704 CCCACAGCAGATCCTTCCC 59.774 63.158 0.00 0.00 0.00 3.97
346 1093 1.225704 CCCCACAGCAGATCCTTCC 59.774 63.158 0.00 0.00 0.00 3.46
347 1094 0.179936 CTCCCCACAGCAGATCCTTC 59.820 60.000 0.00 0.00 0.00 3.46
348 1095 0.252881 TCTCCCCACAGCAGATCCTT 60.253 55.000 0.00 0.00 0.00 3.36
349 1096 0.690411 CTCTCCCCACAGCAGATCCT 60.690 60.000 0.00 0.00 0.00 3.24
350 1097 1.828768 CTCTCCCCACAGCAGATCC 59.171 63.158 0.00 0.00 0.00 3.36
351 1098 1.145819 GCTCTCCCCACAGCAGATC 59.854 63.158 0.00 0.00 35.56 2.75
352 1099 2.729479 CGCTCTCCCCACAGCAGAT 61.729 63.158 0.00 0.00 35.15 2.90
353 1100 3.385384 CGCTCTCCCCACAGCAGA 61.385 66.667 0.00 0.00 35.15 4.26
354 1101 3.368190 CTCGCTCTCCCCACAGCAG 62.368 68.421 0.00 0.00 35.15 4.24
355 1102 3.385384 CTCGCTCTCCCCACAGCA 61.385 66.667 0.00 0.00 35.15 4.41
356 1103 3.071206 TCTCGCTCTCCCCACAGC 61.071 66.667 0.00 0.00 0.00 4.40
357 1104 0.967887 TTCTCTCGCTCTCCCCACAG 60.968 60.000 0.00 0.00 0.00 3.66
358 1105 0.541998 TTTCTCTCGCTCTCCCCACA 60.542 55.000 0.00 0.00 0.00 4.17
359 1106 0.608640 TTTTCTCTCGCTCTCCCCAC 59.391 55.000 0.00 0.00 0.00 4.61
360 1107 1.276421 CTTTTTCTCTCGCTCTCCCCA 59.724 52.381 0.00 0.00 0.00 4.96
361 1108 1.550976 TCTTTTTCTCTCGCTCTCCCC 59.449 52.381 0.00 0.00 0.00 4.81
362 1109 3.194062 CATCTTTTTCTCTCGCTCTCCC 58.806 50.000 0.00 0.00 0.00 4.30
363 1110 3.855858 ACATCTTTTTCTCTCGCTCTCC 58.144 45.455 0.00 0.00 0.00 3.71
364 1111 5.854431 AAACATCTTTTTCTCTCGCTCTC 57.146 39.130 0.00 0.00 0.00 3.20
365 1112 6.625873 AAAAACATCTTTTTCTCTCGCTCT 57.374 33.333 0.00 0.00 35.04 4.09
387 1134 9.886132 GGATTAGTTCTTCTTATGACCACTAAA 57.114 33.333 0.00 0.00 0.00 1.85
388 1135 9.042450 TGGATTAGTTCTTCTTATGACCACTAA 57.958 33.333 0.00 0.00 0.00 2.24
389 1136 8.603898 TGGATTAGTTCTTCTTATGACCACTA 57.396 34.615 0.00 0.00 0.00 2.74
390 1137 7.496346 TGGATTAGTTCTTCTTATGACCACT 57.504 36.000 0.00 0.00 0.00 4.00
391 1138 8.561738 TTTGGATTAGTTCTTCTTATGACCAC 57.438 34.615 0.00 0.00 0.00 4.16
418 1165 8.797438 GTTTGGGTTAGATTTCAAGAGATTCTT 58.203 33.333 0.00 0.00 37.14 2.52
419 1166 8.166726 AGTTTGGGTTAGATTTCAAGAGATTCT 58.833 33.333 0.00 0.00 0.00 2.40
420 1167 8.341892 AGTTTGGGTTAGATTTCAAGAGATTC 57.658 34.615 0.00 0.00 0.00 2.52
421 1168 9.807921 TTAGTTTGGGTTAGATTTCAAGAGATT 57.192 29.630 0.00 0.00 0.00 2.40
422 1169 9.232473 GTTAGTTTGGGTTAGATTTCAAGAGAT 57.768 33.333 0.00 0.00 0.00 2.75
423 1170 7.664318 GGTTAGTTTGGGTTAGATTTCAAGAGA 59.336 37.037 0.00 0.00 0.00 3.10
424 1171 7.094334 GGGTTAGTTTGGGTTAGATTTCAAGAG 60.094 40.741 0.00 0.00 0.00 2.85
425 1172 6.717997 GGGTTAGTTTGGGTTAGATTTCAAGA 59.282 38.462 0.00 0.00 0.00 3.02
426 1173 6.719829 AGGGTTAGTTTGGGTTAGATTTCAAG 59.280 38.462 0.00 0.00 0.00 3.02
427 1174 6.616577 AGGGTTAGTTTGGGTTAGATTTCAA 58.383 36.000 0.00 0.00 0.00 2.69
428 1175 6.208840 AGGGTTAGTTTGGGTTAGATTTCA 57.791 37.500 0.00 0.00 0.00 2.69
429 1176 6.946583 AGAAGGGTTAGTTTGGGTTAGATTTC 59.053 38.462 0.00 0.00 0.00 2.17
430 1177 6.719829 CAGAAGGGTTAGTTTGGGTTAGATTT 59.280 38.462 0.00 0.00 0.00 2.17
431 1178 6.183361 ACAGAAGGGTTAGTTTGGGTTAGATT 60.183 38.462 0.00 0.00 0.00 2.40
432 1179 5.312443 ACAGAAGGGTTAGTTTGGGTTAGAT 59.688 40.000 0.00 0.00 0.00 1.98
433 1180 4.661709 ACAGAAGGGTTAGTTTGGGTTAGA 59.338 41.667 0.00 0.00 0.00 2.10
434 1181 4.981812 ACAGAAGGGTTAGTTTGGGTTAG 58.018 43.478 0.00 0.00 0.00 2.34
435 1182 5.391577 AACAGAAGGGTTAGTTTGGGTTA 57.608 39.130 0.00 0.00 0.00 2.85
436 1183 3.965470 ACAGAAGGGTTAGTTTGGGTT 57.035 42.857 0.00 0.00 0.00 4.11
437 1184 3.958147 CAAACAGAAGGGTTAGTTTGGGT 59.042 43.478 8.55 0.00 44.17 4.51
438 1185 4.211920 TCAAACAGAAGGGTTAGTTTGGG 58.788 43.478 14.52 0.00 46.48 4.12
439 1186 5.845391 TTCAAACAGAAGGGTTAGTTTGG 57.155 39.130 14.52 0.51 46.48 3.28
446 1193 9.154632 ACCTAAAAATATTCAAACAGAAGGGTT 57.845 29.630 0.00 0.00 40.15 4.11
447 1194 8.721133 ACCTAAAAATATTCAAACAGAAGGGT 57.279 30.769 0.00 0.00 40.15 4.34
472 1219 7.071572 AGTCTGGGTTAGTTTGGACTTAACTAA 59.928 37.037 0.00 0.00 42.63 2.24
473 1220 6.556116 AGTCTGGGTTAGTTTGGACTTAACTA 59.444 38.462 0.00 0.00 37.12 2.24
474 1221 5.368816 AGTCTGGGTTAGTTTGGACTTAACT 59.631 40.000 0.00 0.00 39.13 2.24
475 1222 5.618236 AGTCTGGGTTAGTTTGGACTTAAC 58.382 41.667 0.00 0.00 37.33 2.01
476 1223 5.899631 AGTCTGGGTTAGTTTGGACTTAA 57.100 39.130 0.00 0.00 37.33 1.85
477 1224 6.556116 AGTTAGTCTGGGTTAGTTTGGACTTA 59.444 38.462 0.00 0.00 37.33 2.24
478 1225 5.368816 AGTTAGTCTGGGTTAGTTTGGACTT 59.631 40.000 0.00 0.00 37.33 3.01
479 1226 4.906060 AGTTAGTCTGGGTTAGTTTGGACT 59.094 41.667 0.00 0.00 39.97 3.85
480 1227 5.221581 TGAGTTAGTCTGGGTTAGTTTGGAC 60.222 44.000 0.00 0.00 0.00 4.02
481 1228 4.903049 TGAGTTAGTCTGGGTTAGTTTGGA 59.097 41.667 0.00 0.00 0.00 3.53
482 1229 5.223449 TGAGTTAGTCTGGGTTAGTTTGG 57.777 43.478 0.00 0.00 0.00 3.28
483 1230 5.469084 GGTTGAGTTAGTCTGGGTTAGTTTG 59.531 44.000 0.00 0.00 0.00 2.93
484 1231 5.455755 GGGTTGAGTTAGTCTGGGTTAGTTT 60.456 44.000 0.00 0.00 0.00 2.66
485 1232 4.041321 GGGTTGAGTTAGTCTGGGTTAGTT 59.959 45.833 0.00 0.00 0.00 2.24
486 1233 3.581770 GGGTTGAGTTAGTCTGGGTTAGT 59.418 47.826 0.00 0.00 0.00 2.24
487 1234 3.581332 TGGGTTGAGTTAGTCTGGGTTAG 59.419 47.826 0.00 0.00 0.00 2.34
488 1235 3.589641 TGGGTTGAGTTAGTCTGGGTTA 58.410 45.455 0.00 0.00 0.00 2.85
489 1236 2.414612 TGGGTTGAGTTAGTCTGGGTT 58.585 47.619 0.00 0.00 0.00 4.11
490 1237 2.112279 TGGGTTGAGTTAGTCTGGGT 57.888 50.000 0.00 0.00 0.00 4.51
491 1238 2.356125 CCATGGGTTGAGTTAGTCTGGG 60.356 54.545 2.85 0.00 0.00 4.45
492 1239 2.571653 TCCATGGGTTGAGTTAGTCTGG 59.428 50.000 13.02 0.00 0.00 3.86
493 1240 3.600388 GTCCATGGGTTGAGTTAGTCTG 58.400 50.000 13.02 0.00 0.00 3.51
494 1241 2.572104 GGTCCATGGGTTGAGTTAGTCT 59.428 50.000 13.02 0.00 0.00 3.24
495 1242 2.355818 GGGTCCATGGGTTGAGTTAGTC 60.356 54.545 13.02 0.00 0.00 2.59
496 1243 1.633945 GGGTCCATGGGTTGAGTTAGT 59.366 52.381 13.02 0.00 0.00 2.24
497 1244 1.633432 TGGGTCCATGGGTTGAGTTAG 59.367 52.381 13.02 0.00 0.00 2.34
498 1245 1.353022 GTGGGTCCATGGGTTGAGTTA 59.647 52.381 13.02 0.00 0.00 2.24
499 1246 0.112412 GTGGGTCCATGGGTTGAGTT 59.888 55.000 13.02 0.00 0.00 3.01
500 1247 1.767692 GTGGGTCCATGGGTTGAGT 59.232 57.895 13.02 0.00 0.00 3.41
501 1248 1.000896 GGTGGGTCCATGGGTTGAG 60.001 63.158 13.02 0.00 35.97 3.02
502 1249 1.364317 TTGGTGGGTCCATGGGTTGA 61.364 55.000 13.02 0.00 46.60 3.18
503 1250 0.470833 TTTGGTGGGTCCATGGGTTG 60.471 55.000 13.02 0.00 46.60 3.77
504 1251 0.178935 CTTTGGTGGGTCCATGGGTT 60.179 55.000 13.02 0.00 46.60 4.11
505 1252 1.071314 TCTTTGGTGGGTCCATGGGT 61.071 55.000 13.02 0.00 46.60 4.51
506 1253 0.114168 TTCTTTGGTGGGTCCATGGG 59.886 55.000 13.02 0.00 46.60 4.00
507 1254 1.826720 CATTCTTTGGTGGGTCCATGG 59.173 52.381 4.97 4.97 46.60 3.66
508 1255 1.826720 CCATTCTTTGGTGGGTCCATG 59.173 52.381 0.00 0.00 46.60 3.66
509 1256 2.236489 CCATTCTTTGGTGGGTCCAT 57.764 50.000 0.00 0.00 46.60 3.41
510 1257 3.763931 CCATTCTTTGGTGGGTCCA 57.236 52.632 0.00 0.00 45.60 4.02
950 2023 0.601558 CCCGTTCTCTTTCTCGGTCA 59.398 55.000 0.00 0.00 41.17 4.02
1500 2624 0.680280 AGTAGTCGGTGGCAGACGAT 60.680 55.000 15.84 8.79 42.97 3.73
1530 2654 2.027625 GCCCGTGTTCTCCAACGAG 61.028 63.158 0.00 0.00 34.95 4.18
1760 2893 6.743575 ATCCTACTTTCTTCAAACCGAATG 57.256 37.500 0.00 0.00 31.69 2.67
1830 3225 3.825143 ACAGCAAGGCAAGACAATTTT 57.175 38.095 0.00 0.00 0.00 1.82
1838 3233 1.948508 TGCGTAACAGCAAGGCAAG 59.051 52.632 0.00 0.00 45.06 4.01
1845 3240 2.031245 CCTCATTTTGTGCGTAACAGCA 60.031 45.455 0.00 0.00 45.96 4.41
1846 3241 2.031157 ACCTCATTTTGTGCGTAACAGC 60.031 45.455 0.00 0.00 40.74 4.40
1850 3245 4.336993 ACTCAAACCTCATTTTGTGCGTAA 59.663 37.500 0.00 0.00 37.66 3.18
1854 3249 4.305989 TCACTCAAACCTCATTTTGTGC 57.694 40.909 0.00 0.00 37.66 4.57
1863 3258 7.496263 GGAAATCTACCTATTCACTCAAACCTC 59.504 40.741 0.00 0.00 0.00 3.85
1866 3261 7.339482 AGGGAAATCTACCTATTCACTCAAAC 58.661 38.462 0.00 0.00 31.30 2.93
1878 3273 5.319043 TGTGTTTTGAGGGAAATCTACCT 57.681 39.130 0.00 0.00 40.54 3.08
1880 3275 6.877611 TCTTGTGTTTTGAGGGAAATCTAC 57.122 37.500 0.00 0.00 0.00 2.59
1881 3276 7.889873 TTTCTTGTGTTTTGAGGGAAATCTA 57.110 32.000 0.00 0.00 0.00 1.98
1887 3282 6.729690 ATTCATTTCTTGTGTTTTGAGGGA 57.270 33.333 0.00 0.00 0.00 4.20
1920 3315 6.986250 AGAGACCCTTTTTCATCAATTTCAC 58.014 36.000 0.00 0.00 0.00 3.18
1929 3324 1.630878 AGCGGAGAGACCCTTTTTCAT 59.369 47.619 0.00 0.00 34.64 2.57
1930 3325 1.056660 AGCGGAGAGACCCTTTTTCA 58.943 50.000 0.00 0.00 34.64 2.69
1931 3326 2.186532 AAGCGGAGAGACCCTTTTTC 57.813 50.000 0.00 0.00 34.64 2.29
1932 3327 2.658807 AAAGCGGAGAGACCCTTTTT 57.341 45.000 0.00 0.00 36.49 1.94
1936 3331 8.431910 TTTATAATATAAAGCGGAGAGACCCT 57.568 34.615 1.58 0.00 34.64 4.34
1937 3332 8.933807 GTTTTATAATATAAAGCGGAGAGACCC 58.066 37.037 5.70 0.00 34.64 4.46
1945 3340 9.790389 TGGTTGTTGTTTTATAATATAAAGCGG 57.210 29.630 12.64 0.00 0.00 5.52
1956 3351 9.530633 GTTGTATTGGTTGGTTGTTGTTTTATA 57.469 29.630 0.00 0.00 0.00 0.98
1958 3353 6.817140 GGTTGTATTGGTTGGTTGTTGTTTTA 59.183 34.615 0.00 0.00 0.00 1.52
1960 3355 5.179533 GGTTGTATTGGTTGGTTGTTGTTT 58.820 37.500 0.00 0.00 0.00 2.83
1961 3356 4.223032 TGGTTGTATTGGTTGGTTGTTGTT 59.777 37.500 0.00 0.00 0.00 2.83
1962 3357 3.769844 TGGTTGTATTGGTTGGTTGTTGT 59.230 39.130 0.00 0.00 0.00 3.32
1963 3358 4.367450 CTGGTTGTATTGGTTGGTTGTTG 58.633 43.478 0.00 0.00 0.00 3.33
1964 3359 3.181470 GCTGGTTGTATTGGTTGGTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
1966 3361 2.627699 AGCTGGTTGTATTGGTTGGTTG 59.372 45.455 0.00 0.00 0.00 3.77
1967 3362 2.890945 GAGCTGGTTGTATTGGTTGGTT 59.109 45.455 0.00 0.00 0.00 3.67
1968 3363 2.514803 GAGCTGGTTGTATTGGTTGGT 58.485 47.619 0.00 0.00 0.00 3.67
1969 3364 1.468520 CGAGCTGGTTGTATTGGTTGG 59.531 52.381 0.00 0.00 0.00 3.77
1970 3365 1.135689 GCGAGCTGGTTGTATTGGTTG 60.136 52.381 0.00 0.00 0.00 3.77
1971 3366 1.165270 GCGAGCTGGTTGTATTGGTT 58.835 50.000 0.00 0.00 0.00 3.67
1972 3367 0.324943 AGCGAGCTGGTTGTATTGGT 59.675 50.000 0.00 0.00 0.00 3.67
1973 3368 0.729116 CAGCGAGCTGGTTGTATTGG 59.271 55.000 16.69 0.00 40.17 3.16
1993 3388 3.910490 TTGTTTGTGCTGCGGCCC 61.910 61.111 16.57 3.34 37.74 5.80
1994 3389 2.658268 GTTGTTTGTGCTGCGGCC 60.658 61.111 16.57 7.08 37.74 6.13
1998 3769 2.315901 GAATACGGTTGTTTGTGCTGC 58.684 47.619 0.00 0.00 0.00 5.25
2000 3771 2.858745 AGGAATACGGTTGTTTGTGCT 58.141 42.857 0.00 0.00 0.00 4.40
2001 3772 4.393680 TCATAGGAATACGGTTGTTTGTGC 59.606 41.667 0.00 0.00 0.00 4.57
2004 3775 7.700656 GGAATTTCATAGGAATACGGTTGTTTG 59.299 37.037 0.00 0.00 31.93 2.93
2005 3776 7.147966 GGGAATTTCATAGGAATACGGTTGTTT 60.148 37.037 0.00 0.00 31.93 2.83
2007 3778 5.826208 GGGAATTTCATAGGAATACGGTTGT 59.174 40.000 0.00 0.00 31.93 3.32
2012 3783 6.183360 GCATACGGGAATTTCATAGGAATACG 60.183 42.308 0.00 0.00 31.93 3.06
2013 3784 6.183360 CGCATACGGGAATTTCATAGGAATAC 60.183 42.308 0.00 0.00 34.97 1.89
2014 3785 5.872617 CGCATACGGGAATTTCATAGGAATA 59.127 40.000 0.00 0.00 34.97 1.75
2015 3786 4.695455 CGCATACGGGAATTTCATAGGAAT 59.305 41.667 0.00 0.00 34.97 3.01
2024 3795 2.718563 AGGAAACGCATACGGGAATTT 58.281 42.857 0.00 0.00 46.04 1.82
2025 3796 2.413310 AGGAAACGCATACGGGAATT 57.587 45.000 0.00 0.00 46.04 2.17
2026 3797 2.168936 TGTAGGAAACGCATACGGGAAT 59.831 45.455 0.00 0.00 46.04 3.01
2029 3800 2.012937 TTGTAGGAAACGCATACGGG 57.987 50.000 0.00 0.00 46.04 5.28
2032 3803 2.995258 TCGGTTTGTAGGAAACGCATAC 59.005 45.455 0.00 0.00 39.47 2.39
2035 3806 1.950828 TTCGGTTTGTAGGAAACGCA 58.049 45.000 0.00 0.00 39.47 5.24
2036 3807 2.846693 CATTCGGTTTGTAGGAAACGC 58.153 47.619 0.00 0.00 39.47 4.84
2037 3808 2.224549 TGCATTCGGTTTGTAGGAAACG 59.775 45.455 0.00 0.00 40.92 3.60
2038 3809 3.907894 TGCATTCGGTTTGTAGGAAAC 57.092 42.857 0.00 0.00 0.00 2.78
2039 3810 5.004448 TGTATGCATTCGGTTTGTAGGAAA 58.996 37.500 3.54 0.00 0.00 3.13
2040 3811 4.580868 TGTATGCATTCGGTTTGTAGGAA 58.419 39.130 3.54 0.00 0.00 3.36
2045 3816 5.342433 CATTCATGTATGCATTCGGTTTGT 58.658 37.500 3.54 0.00 31.99 2.83
2057 3828 2.945008 ACAAGCCGACCATTCATGTATG 59.055 45.455 5.38 5.38 0.00 2.39
2058 3829 3.281727 ACAAGCCGACCATTCATGTAT 57.718 42.857 0.00 0.00 0.00 2.29
2059 3830 2.746904 CAACAAGCCGACCATTCATGTA 59.253 45.455 0.00 0.00 0.00 2.29
2063 4855 0.109532 TCCAACAAGCCGACCATTCA 59.890 50.000 0.00 0.00 0.00 2.57
2064 4856 0.521735 GTCCAACAAGCCGACCATTC 59.478 55.000 0.00 0.00 0.00 2.67
2065 4857 1.234615 CGTCCAACAAGCCGACCATT 61.235 55.000 0.00 0.00 0.00 3.16
2070 4862 2.342279 CTCCGTCCAACAAGCCGA 59.658 61.111 0.00 0.00 0.00 5.54
2071 4863 2.742372 CCTCCGTCCAACAAGCCG 60.742 66.667 0.00 0.00 0.00 5.52
2088 4891 1.195115 TGCACATGAGGGTCCTAGAC 58.805 55.000 0.00 0.00 0.00 2.59
2120 5399 6.342111 CCCCTCTCTTATTTGTAGTCACTTC 58.658 44.000 0.00 0.00 0.00 3.01
2167 5446 2.201732 GAGTGTTTCTCAGTTGTCGCA 58.798 47.619 0.00 0.00 42.34 5.10
2174 5453 4.120589 GGAGTTTTCGAGTGTTTCTCAGT 58.879 43.478 0.00 0.00 42.88 3.41
2175 5454 4.025647 GTGGAGTTTTCGAGTGTTTCTCAG 60.026 45.833 0.00 0.00 42.88 3.35
2188 5468 1.881973 TCTGCATGCAGTGGAGTTTTC 59.118 47.619 39.08 0.00 45.60 2.29
2206 5486 3.118665 AGTTGTGTTTTGGCTTTGCATCT 60.119 39.130 0.00 0.00 0.00 2.90
2208 5488 2.937799 CAGTTGTGTTTTGGCTTTGCAT 59.062 40.909 0.00 0.00 0.00 3.96
2253 5534 3.731652 TGGTTTTTGCCTTGATGTCTG 57.268 42.857 0.00 0.00 0.00 3.51
2254 5535 3.450457 TGTTGGTTTTTGCCTTGATGTCT 59.550 39.130 0.00 0.00 0.00 3.41
2297 5580 7.504926 TTATGTAGGACACCATTAGGAAGTT 57.495 36.000 0.00 0.00 38.69 2.66
2387 5670 3.854856 GCCTGAAAAGTGTGGCCA 58.145 55.556 0.00 0.00 39.49 5.36
2470 5756 6.706270 CGGTTACATAGAGGAATAAACATGCT 59.294 38.462 0.00 0.00 0.00 3.79
2481 5767 3.461085 ACCTAGGTCGGTTACATAGAGGA 59.539 47.826 9.21 0.00 43.65 3.71
2484 5770 2.954318 GCACCTAGGTCGGTTACATAGA 59.046 50.000 12.84 0.00 43.65 1.98
2521 5807 3.052490 ACCCCTCAGCTTATAGAGACACT 60.052 47.826 0.48 0.00 33.74 3.55
2536 5822 4.620086 TCTCTATGGTCTAAACCCCTCA 57.380 45.455 0.00 0.00 45.83 3.86
2560 5846 8.654215 CCTCGAGATTGTATATGTGAATGAATG 58.346 37.037 15.71 0.00 0.00 2.67
2577 5863 4.282496 ACAGGTTGATCTACCTCGAGATT 58.718 43.478 23.84 2.53 45.44 2.40
2605 5891 4.044308 TGTATTGACTGTGGATGGGGTAT 58.956 43.478 0.00 0.00 0.00 2.73
2617 5903 3.181530 GCGTGCTTGTAGTGTATTGACTG 60.182 47.826 0.00 0.00 0.00 3.51
2622 5908 3.040147 ACAGCGTGCTTGTAGTGTATT 57.960 42.857 0.00 0.00 0.00 1.89
2628 5914 0.246635 ACCCTACAGCGTGCTTGTAG 59.753 55.000 17.25 17.25 36.29 2.74
2637 5923 3.259902 GAAGAGGTAAAACCCTACAGCG 58.740 50.000 0.00 0.00 39.75 5.18
2639 5925 4.796038 TCGAAGAGGTAAAACCCTACAG 57.204 45.455 0.00 0.00 39.75 2.74
2668 5954 3.414269 ACACGGTATTTACCCAGGTTTG 58.586 45.455 0.00 0.00 43.51 2.93
2669 5955 3.328637 AGACACGGTATTTACCCAGGTTT 59.671 43.478 0.00 0.00 43.51 3.27
2712 5998 0.250513 AAGCTGGTGATCTCGGGTTC 59.749 55.000 0.00 0.00 0.00 3.62
2715 6001 1.153289 CCAAGCTGGTGATCTCGGG 60.153 63.158 0.00 0.00 31.35 5.14
2718 6004 0.107459 GGTCCCAAGCTGGTGATCTC 60.107 60.000 0.00 0.00 35.17 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.