Multiple sequence alignment - TraesCS6D01G210800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G210800 chr6D 100.000 2660 0 0 1 2660 297408374 297405715 0.000000e+00 4913.0
1 TraesCS6D01G210800 chr6D 91.869 1156 68 11 615 1759 297490280 297489140 0.000000e+00 1591.0
2 TraesCS6D01G210800 chr6D 89.844 768 58 10 972 1724 298399349 298398587 0.000000e+00 968.0
3 TraesCS6D01G210800 chr6D 86.981 891 55 24 874 1723 298207396 298206526 0.000000e+00 946.0
4 TraesCS6D01G210800 chr6D 87.306 772 51 17 997 1724 298444812 298444044 0.000000e+00 839.0
5 TraesCS6D01G210800 chr6D 87.015 747 64 23 993 1723 296993563 296992834 0.000000e+00 811.0
6 TraesCS6D01G210800 chr6D 95.980 398 15 1 150 547 297429033 297428637 0.000000e+00 645.0
7 TraesCS6D01G210800 chr6D 84.337 581 77 8 2091 2658 56920153 56920732 8.320000e-155 556.0
8 TraesCS6D01G210800 chr6D 87.859 453 51 4 2209 2658 111072039 111071588 1.810000e-146 529.0
9 TraesCS6D01G210800 chr6D 90.690 290 22 1 662 951 296993844 296993560 5.370000e-102 381.0
10 TraesCS6D01G210800 chr6D 93.333 120 7 1 548 666 296994163 296994044 2.720000e-40 176.0
11 TraesCS6D01G210800 chr6D 88.095 84 6 3 548 628 297514128 297514046 2.180000e-16 97.1
12 TraesCS6D01G210800 chr6A 89.815 1188 92 19 549 1723 421463378 421464549 0.000000e+00 1496.0
13 TraesCS6D01G210800 chr6A 89.362 987 60 11 997 1944 421367879 421368859 0.000000e+00 1199.0
14 TraesCS6D01G210800 chr6A 86.756 891 63 30 874 1723 421225949 421226825 0.000000e+00 941.0
15 TraesCS6D01G210800 chr6A 88.732 497 48 7 6 500 134684189 134683699 3.790000e-168 601.0
16 TraesCS6D01G210800 chr6A 88.330 497 50 7 6 500 268835283 268834793 8.200000e-165 590.0
17 TraesCS6D01G210800 chr6A 91.830 306 17 4 549 853 421367492 421367790 1.140000e-113 420.0
18 TraesCS6D01G210800 chr6A 87.413 286 22 4 1452 1723 420974194 420974479 1.540000e-82 316.0
19 TraesCS6D01G210800 chr6A 93.125 160 11 0 4 163 518804085 518803926 4.430000e-58 235.0
20 TraesCS6D01G210800 chr6A 91.875 160 13 0 4 163 518800459 518800300 9.580000e-55 224.0
21 TraesCS6D01G210800 chr6B 89.169 1191 95 22 548 1723 461395119 461393948 0.000000e+00 1454.0
22 TraesCS6D01G210800 chr6B 88.161 794 48 18 997 1749 461961868 461961080 0.000000e+00 904.0
23 TraesCS6D01G210800 chr6B 85.922 895 66 35 874 1724 461848380 461847502 0.000000e+00 900.0
24 TraesCS6D01G210800 chr5D 94.128 545 30 2 1 545 434912685 434912143 0.000000e+00 828.0
25 TraesCS6D01G210800 chr5D 92.929 396 26 2 152 547 434917340 434916947 2.300000e-160 575.0
26 TraesCS6D01G210800 chr5D 83.304 575 78 12 2091 2658 84826841 84826278 5.080000e-142 514.0
27 TraesCS6D01G210800 chr5A 87.002 577 65 9 2090 2657 79208406 79207831 2.230000e-180 641.0
28 TraesCS6D01G210800 chr5A 84.829 468 46 17 90 547 52496815 52496363 5.220000e-122 448.0
29 TraesCS6D01G210800 chr1D 94.363 408 19 4 152 557 18251566 18251971 8.090000e-175 623.0
30 TraesCS6D01G210800 chr1A 85.340 573 78 6 2090 2658 153331986 153332556 2.950000e-164 588.0
31 TraesCS6D01G210800 chr4A 92.804 403 24 2 149 547 718796467 718796868 1.780000e-161 579.0
32 TraesCS6D01G210800 chr4A 94.194 155 9 0 4 158 45718412 45718258 1.230000e-58 237.0
33 TraesCS6D01G210800 chr4D 85.258 563 79 4 2091 2650 370304637 370305198 6.380000e-161 577.0
34 TraesCS6D01G210800 chr3D 84.060 596 72 13 2085 2658 61771600 61772194 1.080000e-153 553.0
35 TraesCS6D01G210800 chr7D 83.160 576 87 9 2091 2658 83388579 83389152 3.930000e-143 518.0
36 TraesCS6D01G210800 chr7D 83.456 544 67 16 7 544 173199445 173199971 3.980000e-133 484.0
37 TraesCS6D01G210800 chr7A 83.859 539 72 13 2092 2619 674287430 674287964 1.420000e-137 499.0
38 TraesCS6D01G210800 chrUn 91.250 160 14 0 4 163 381065902 381065743 4.460000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G210800 chr6D 297405715 297408374 2659 True 4913.0 4913 100.000 1 2660 1 chr6D.!!$R2 2659
1 TraesCS6D01G210800 chr6D 297489140 297490280 1140 True 1591.0 1591 91.869 615 1759 1 chr6D.!!$R4 1144
2 TraesCS6D01G210800 chr6D 298398587 298399349 762 True 968.0 968 89.844 972 1724 1 chr6D.!!$R7 752
3 TraesCS6D01G210800 chr6D 298206526 298207396 870 True 946.0 946 86.981 874 1723 1 chr6D.!!$R6 849
4 TraesCS6D01G210800 chr6D 298444044 298444812 768 True 839.0 839 87.306 997 1724 1 chr6D.!!$R8 727
5 TraesCS6D01G210800 chr6D 56920153 56920732 579 False 556.0 556 84.337 2091 2658 1 chr6D.!!$F1 567
6 TraesCS6D01G210800 chr6D 296992834 296994163 1329 True 456.0 811 90.346 548 1723 3 chr6D.!!$R9 1175
7 TraesCS6D01G210800 chr6A 421463378 421464549 1171 False 1496.0 1496 89.815 549 1723 1 chr6A.!!$F3 1174
8 TraesCS6D01G210800 chr6A 421225949 421226825 876 False 941.0 941 86.756 874 1723 1 chr6A.!!$F2 849
9 TraesCS6D01G210800 chr6A 421367492 421368859 1367 False 809.5 1199 90.596 549 1944 2 chr6A.!!$F4 1395
10 TraesCS6D01G210800 chr6A 518800300 518804085 3785 True 229.5 235 92.500 4 163 2 chr6A.!!$R3 159
11 TraesCS6D01G210800 chr6B 461393948 461395119 1171 True 1454.0 1454 89.169 548 1723 1 chr6B.!!$R1 1175
12 TraesCS6D01G210800 chr6B 461961080 461961868 788 True 904.0 904 88.161 997 1749 1 chr6B.!!$R3 752
13 TraesCS6D01G210800 chr6B 461847502 461848380 878 True 900.0 900 85.922 874 1724 1 chr6B.!!$R2 850
14 TraesCS6D01G210800 chr5D 434912143 434912685 542 True 828.0 828 94.128 1 545 1 chr5D.!!$R2 544
15 TraesCS6D01G210800 chr5D 84826278 84826841 563 True 514.0 514 83.304 2091 2658 1 chr5D.!!$R1 567
16 TraesCS6D01G210800 chr5A 79207831 79208406 575 True 641.0 641 87.002 2090 2657 1 chr5A.!!$R2 567
17 TraesCS6D01G210800 chr1A 153331986 153332556 570 False 588.0 588 85.340 2090 2658 1 chr1A.!!$F1 568
18 TraesCS6D01G210800 chr4D 370304637 370305198 561 False 577.0 577 85.258 2091 2650 1 chr4D.!!$F1 559
19 TraesCS6D01G210800 chr3D 61771600 61772194 594 False 553.0 553 84.060 2085 2658 1 chr3D.!!$F1 573
20 TraesCS6D01G210800 chr7D 83388579 83389152 573 False 518.0 518 83.160 2091 2658 1 chr7D.!!$F1 567
21 TraesCS6D01G210800 chr7D 173199445 173199971 526 False 484.0 484 83.456 7 544 1 chr7D.!!$F2 537
22 TraesCS6D01G210800 chr7A 674287430 674287964 534 False 499.0 499 83.859 2092 2619 1 chr7A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.036306 AGCTAACAAACCCCGACCAG 59.964 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 5394 0.031449 GAGACCGGCTGTAGATGCTC 59.969 60.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.174712 TTCTTCCCGTCCGACTCGTT 61.175 55.000 0.00 0.00 0.00 3.85
88 89 2.255252 GTTGCCCGACATGTGTGC 59.745 61.111 1.15 3.23 0.00 4.57
94 95 4.088762 CGACATGTGTGCCGCCAC 62.089 66.667 1.15 0.00 42.40 5.01
95 96 4.088762 GACATGTGTGCCGCCACG 62.089 66.667 1.15 0.00 45.04 4.94
106 107 3.966215 CGCCACGGATCAAACACT 58.034 55.556 0.00 0.00 0.00 3.55
107 108 1.497278 CGCCACGGATCAAACACTG 59.503 57.895 0.00 0.00 0.00 3.66
108 109 1.210155 GCCACGGATCAAACACTGC 59.790 57.895 0.00 0.00 0.00 4.40
109 110 1.875963 CCACGGATCAAACACTGCC 59.124 57.895 0.00 0.00 0.00 4.85
110 111 1.497278 CACGGATCAAACACTGCCG 59.503 57.895 0.00 0.00 46.83 5.69
111 112 1.671054 ACGGATCAAACACTGCCGG 60.671 57.895 0.00 0.00 45.80 6.13
112 113 2.877691 GGATCAAACACTGCCGGC 59.122 61.111 22.73 22.73 0.00 6.13
113 114 2.700773 GGATCAAACACTGCCGGCC 61.701 63.158 26.77 6.44 0.00 6.13
114 115 1.971167 GATCAAACACTGCCGGCCA 60.971 57.895 26.77 11.42 0.00 5.36
115 116 2.200170 GATCAAACACTGCCGGCCAC 62.200 60.000 26.77 0.00 0.00 5.01
116 117 3.977244 CAAACACTGCCGGCCACC 61.977 66.667 26.77 0.00 0.00 4.61
127 128 4.554036 GGCCACCGGAGCAGGATC 62.554 72.222 20.10 1.99 34.73 3.36
128 129 3.785859 GCCACCGGAGCAGGATCA 61.786 66.667 9.46 0.00 34.73 2.92
129 130 2.989639 CCACCGGAGCAGGATCAA 59.010 61.111 9.46 0.00 34.73 2.57
130 131 1.299648 CCACCGGAGCAGGATCAAA 59.700 57.895 9.46 0.00 34.73 2.69
131 132 1.026718 CCACCGGAGCAGGATCAAAC 61.027 60.000 9.46 0.00 34.73 2.93
132 133 0.321564 CACCGGAGCAGGATCAAACA 60.322 55.000 9.46 0.00 34.73 2.83
133 134 0.321653 ACCGGAGCAGGATCAAACAC 60.322 55.000 9.46 0.00 34.73 3.32
134 135 1.026718 CCGGAGCAGGATCAAACACC 61.027 60.000 0.00 0.00 0.00 4.16
135 136 0.321564 CGGAGCAGGATCAAACACCA 60.322 55.000 0.00 0.00 0.00 4.17
136 137 1.457346 GGAGCAGGATCAAACACCAG 58.543 55.000 0.00 0.00 0.00 4.00
137 138 1.003580 GGAGCAGGATCAAACACCAGA 59.996 52.381 0.00 0.00 0.00 3.86
138 139 2.079925 GAGCAGGATCAAACACCAGAC 58.920 52.381 0.00 0.00 0.00 3.51
139 140 1.701847 AGCAGGATCAAACACCAGACT 59.298 47.619 0.00 0.00 0.00 3.24
140 141 2.079925 GCAGGATCAAACACCAGACTC 58.920 52.381 0.00 0.00 0.00 3.36
141 142 2.704572 CAGGATCAAACACCAGACTCC 58.295 52.381 0.00 0.00 0.00 3.85
142 143 1.276421 AGGATCAAACACCAGACTCCG 59.724 52.381 0.00 0.00 0.00 4.63
143 144 1.275291 GGATCAAACACCAGACTCCGA 59.725 52.381 0.00 0.00 0.00 4.55
144 145 2.093447 GGATCAAACACCAGACTCCGAT 60.093 50.000 0.00 0.00 0.00 4.18
145 146 2.455674 TCAAACACCAGACTCCGATG 57.544 50.000 0.00 0.00 0.00 3.84
146 147 0.798776 CAAACACCAGACTCCGATGC 59.201 55.000 0.00 0.00 0.00 3.91
147 148 0.321653 AAACACCAGACTCCGATGCC 60.322 55.000 0.00 0.00 0.00 4.40
148 149 1.480212 AACACCAGACTCCGATGCCA 61.480 55.000 0.00 0.00 0.00 4.92
149 150 1.296392 CACCAGACTCCGATGCCAA 59.704 57.895 0.00 0.00 0.00 4.52
150 151 0.107508 CACCAGACTCCGATGCCAAT 60.108 55.000 0.00 0.00 0.00 3.16
151 152 0.620556 ACCAGACTCCGATGCCAATT 59.379 50.000 0.00 0.00 0.00 2.32
152 153 1.019673 CCAGACTCCGATGCCAATTG 58.980 55.000 0.00 0.00 0.00 2.32
153 154 1.679944 CCAGACTCCGATGCCAATTGT 60.680 52.381 4.43 0.00 0.00 2.71
154 155 1.667724 CAGACTCCGATGCCAATTGTC 59.332 52.381 4.43 0.00 0.00 3.18
155 156 0.652592 GACTCCGATGCCAATTGTCG 59.347 55.000 4.43 7.29 35.29 4.35
156 157 0.036388 ACTCCGATGCCAATTGTCGT 60.036 50.000 13.77 0.00 33.77 4.34
157 158 1.086696 CTCCGATGCCAATTGTCGTT 58.913 50.000 13.77 0.00 33.77 3.85
158 159 0.801872 TCCGATGCCAATTGTCGTTG 59.198 50.000 13.77 3.06 33.77 4.10
159 160 0.798009 CCGATGCCAATTGTCGTTGC 60.798 55.000 13.77 6.47 33.77 4.17
160 161 0.798009 CGATGCCAATTGTCGTTGCC 60.798 55.000 4.43 0.00 0.00 4.52
161 162 0.798009 GATGCCAATTGTCGTTGCCG 60.798 55.000 4.43 0.00 0.00 5.69
162 163 1.240641 ATGCCAATTGTCGTTGCCGA 61.241 50.000 4.43 0.00 41.73 5.54
163 164 1.240641 TGCCAATTGTCGTTGCCGAT 61.241 50.000 4.43 0.00 46.30 4.18
164 165 0.109319 GCCAATTGTCGTTGCCGATT 60.109 50.000 4.43 0.00 46.30 3.34
165 166 1.131504 GCCAATTGTCGTTGCCGATTA 59.868 47.619 4.43 0.00 46.30 1.75
166 167 2.791158 GCCAATTGTCGTTGCCGATTAG 60.791 50.000 4.43 0.00 46.30 1.73
167 168 2.440501 CAATTGTCGTTGCCGATTAGC 58.559 47.619 0.00 0.00 46.30 3.09
168 169 2.024176 ATTGTCGTTGCCGATTAGCT 57.976 45.000 0.00 0.00 46.30 3.32
169 170 1.075542 TTGTCGTTGCCGATTAGCTG 58.924 50.000 0.00 0.00 46.30 4.24
170 171 0.245266 TGTCGTTGCCGATTAGCTGA 59.755 50.000 0.00 0.00 46.30 4.26
171 172 1.134818 TGTCGTTGCCGATTAGCTGAT 60.135 47.619 0.00 0.00 46.30 2.90
172 173 1.523095 GTCGTTGCCGATTAGCTGATC 59.477 52.381 8.41 8.41 46.30 2.92
173 174 0.504384 CGTTGCCGATTAGCTGATCG 59.496 55.000 28.50 28.50 46.33 3.69
185 186 0.231790 GCTGATCGAGCGAAGAATGC 59.768 55.000 0.00 0.00 38.15 3.56
187 188 1.521840 CTGATCGAGCGAAGAATGCTG 59.478 52.381 0.00 0.00 44.18 4.41
188 189 1.134946 TGATCGAGCGAAGAATGCTGA 59.865 47.619 0.00 0.00 44.18 4.26
189 190 1.786004 GATCGAGCGAAGAATGCTGAG 59.214 52.381 0.00 0.00 44.18 3.35
190 191 0.803768 TCGAGCGAAGAATGCTGAGC 60.804 55.000 0.00 0.00 44.18 4.26
191 192 0.805322 CGAGCGAAGAATGCTGAGCT 60.805 55.000 5.83 3.01 44.18 4.09
192 193 0.929615 GAGCGAAGAATGCTGAGCTC 59.070 55.000 13.12 13.12 44.18 4.09
193 194 0.248565 AGCGAAGAATGCTGAGCTCA 59.751 50.000 17.19 17.19 42.14 4.26
194 195 1.081892 GCGAAGAATGCTGAGCTCAA 58.918 50.000 18.85 3.88 0.00 3.02
195 196 1.062294 GCGAAGAATGCTGAGCTCAAG 59.938 52.381 18.85 12.76 0.00 3.02
196 197 2.614779 CGAAGAATGCTGAGCTCAAGA 58.385 47.619 18.85 7.35 0.00 3.02
197 198 2.998670 CGAAGAATGCTGAGCTCAAGAA 59.001 45.455 18.85 7.08 0.00 2.52
198 199 3.181522 CGAAGAATGCTGAGCTCAAGAAC 60.182 47.826 18.85 8.21 0.00 3.01
199 200 3.413846 AGAATGCTGAGCTCAAGAACA 57.586 42.857 18.85 13.61 0.00 3.18
200 201 3.072944 AGAATGCTGAGCTCAAGAACAC 58.927 45.455 18.85 7.95 0.00 3.32
201 202 1.436600 ATGCTGAGCTCAAGAACACG 58.563 50.000 18.85 5.15 0.00 4.49
202 203 1.224069 TGCTGAGCTCAAGAACACGC 61.224 55.000 18.85 15.68 0.00 5.34
203 204 1.224069 GCTGAGCTCAAGAACACGCA 61.224 55.000 18.85 0.00 0.00 5.24
204 205 0.510359 CTGAGCTCAAGAACACGCAC 59.490 55.000 18.85 0.00 0.00 5.34
205 206 0.179086 TGAGCTCAAGAACACGCACA 60.179 50.000 15.67 0.00 0.00 4.57
206 207 0.937304 GAGCTCAAGAACACGCACAA 59.063 50.000 9.40 0.00 0.00 3.33
207 208 0.657840 AGCTCAAGAACACGCACAAC 59.342 50.000 0.00 0.00 0.00 3.32
208 209 0.376852 GCTCAAGAACACGCACAACA 59.623 50.000 0.00 0.00 0.00 3.33
209 210 1.856014 GCTCAAGAACACGCACAACAC 60.856 52.381 0.00 0.00 0.00 3.32
210 211 1.396648 CTCAAGAACACGCACAACACA 59.603 47.619 0.00 0.00 0.00 3.72
211 212 1.129624 TCAAGAACACGCACAACACAC 59.870 47.619 0.00 0.00 0.00 3.82
212 213 0.096281 AAGAACACGCACAACACACG 59.904 50.000 0.00 0.00 0.00 4.49
213 214 1.932564 GAACACGCACAACACACGC 60.933 57.895 0.00 0.00 0.00 5.34
218 219 2.546321 GCACAACACACGCGAGAG 59.454 61.111 15.93 6.19 0.00 3.20
219 220 1.949133 GCACAACACACGCGAGAGA 60.949 57.895 15.93 0.00 0.00 3.10
220 221 1.880601 GCACAACACACGCGAGAGAG 61.881 60.000 15.93 4.87 0.00 3.20
221 222 1.007271 ACAACACACGCGAGAGAGG 60.007 57.895 15.93 4.09 34.13 3.69
222 223 1.285950 CAACACACGCGAGAGAGGA 59.714 57.895 15.93 0.00 34.13 3.71
223 224 0.318699 CAACACACGCGAGAGAGGAA 60.319 55.000 15.93 0.00 34.13 3.36
224 225 0.387929 AACACACGCGAGAGAGGAAA 59.612 50.000 15.93 0.00 34.13 3.13
225 226 0.039074 ACACACGCGAGAGAGGAAAG 60.039 55.000 15.93 0.00 34.13 2.62
226 227 1.080434 ACACGCGAGAGAGGAAAGC 60.080 57.895 15.93 0.00 34.13 3.51
227 228 1.214062 CACGCGAGAGAGGAAAGCT 59.786 57.895 15.93 0.00 34.13 3.74
228 229 0.389166 CACGCGAGAGAGGAAAGCTT 60.389 55.000 15.93 0.00 34.13 3.74
229 230 0.318762 ACGCGAGAGAGGAAAGCTTT 59.681 50.000 15.93 12.53 34.13 3.51
230 231 1.270358 ACGCGAGAGAGGAAAGCTTTT 60.270 47.619 15.93 0.00 34.13 2.27
231 232 1.801178 CGCGAGAGAGGAAAGCTTTTT 59.199 47.619 14.05 4.96 0.00 1.94
247 248 2.810439 TTTTTGCCGCAGCTAACAAT 57.190 40.000 0.00 0.00 40.80 2.71
248 249 2.063156 TTTTGCCGCAGCTAACAATG 57.937 45.000 0.00 0.00 40.80 2.82
249 250 0.388391 TTTGCCGCAGCTAACAATGC 60.388 50.000 0.00 0.00 40.80 3.56
250 251 2.102946 GCCGCAGCTAACAATGCC 59.897 61.111 0.00 0.00 39.30 4.40
251 252 2.699768 GCCGCAGCTAACAATGCCA 61.700 57.895 0.00 0.00 39.30 4.92
252 253 1.137404 CCGCAGCTAACAATGCCAC 59.863 57.895 0.00 0.00 39.30 5.01
253 254 1.226101 CGCAGCTAACAATGCCACG 60.226 57.895 0.00 0.00 39.30 4.94
254 255 1.875963 GCAGCTAACAATGCCACGT 59.124 52.632 0.00 0.00 36.41 4.49
255 256 0.240945 GCAGCTAACAATGCCACGTT 59.759 50.000 0.00 0.00 36.41 3.99
256 257 1.335872 GCAGCTAACAATGCCACGTTT 60.336 47.619 0.00 0.00 36.41 3.60
257 258 2.862140 GCAGCTAACAATGCCACGTTTT 60.862 45.455 0.00 0.00 36.41 2.43
258 259 2.979813 CAGCTAACAATGCCACGTTTTC 59.020 45.455 0.00 0.00 0.00 2.29
259 260 2.884639 AGCTAACAATGCCACGTTTTCT 59.115 40.909 0.00 0.00 0.00 2.52
260 261 2.979813 GCTAACAATGCCACGTTTTCTG 59.020 45.455 0.00 0.00 0.00 3.02
261 262 3.550030 GCTAACAATGCCACGTTTTCTGT 60.550 43.478 0.00 0.00 0.00 3.41
262 263 3.518634 AACAATGCCACGTTTTCTGTT 57.481 38.095 0.00 0.00 0.00 3.16
263 264 3.518634 ACAATGCCACGTTTTCTGTTT 57.481 38.095 0.00 0.00 0.00 2.83
264 265 3.443976 ACAATGCCACGTTTTCTGTTTC 58.556 40.909 0.00 0.00 0.00 2.78
265 266 3.119316 ACAATGCCACGTTTTCTGTTTCA 60.119 39.130 0.00 0.00 0.00 2.69
266 267 4.050553 CAATGCCACGTTTTCTGTTTCAT 58.949 39.130 0.00 0.00 0.00 2.57
267 268 3.791973 TGCCACGTTTTCTGTTTCATT 57.208 38.095 0.00 0.00 0.00 2.57
268 269 4.116747 TGCCACGTTTTCTGTTTCATTT 57.883 36.364 0.00 0.00 0.00 2.32
269 270 4.109050 TGCCACGTTTTCTGTTTCATTTC 58.891 39.130 0.00 0.00 0.00 2.17
270 271 4.142271 TGCCACGTTTTCTGTTTCATTTCT 60.142 37.500 0.00 0.00 0.00 2.52
271 272 4.803613 GCCACGTTTTCTGTTTCATTTCTT 59.196 37.500 0.00 0.00 0.00 2.52
272 273 5.290885 GCCACGTTTTCTGTTTCATTTCTTT 59.709 36.000 0.00 0.00 0.00 2.52
273 274 6.183360 GCCACGTTTTCTGTTTCATTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
274 275 7.623297 GCCACGTTTTCTGTTTCATTTCTTTTT 60.623 33.333 0.00 0.00 0.00 1.94
275 276 7.897800 CCACGTTTTCTGTTTCATTTCTTTTTC 59.102 33.333 0.00 0.00 0.00 2.29
276 277 7.897800 CACGTTTTCTGTTTCATTTCTTTTTCC 59.102 33.333 0.00 0.00 0.00 3.13
277 278 7.817478 ACGTTTTCTGTTTCATTTCTTTTTCCT 59.183 29.630 0.00 0.00 0.00 3.36
278 279 8.655970 CGTTTTCTGTTTCATTTCTTTTTCCTT 58.344 29.630 0.00 0.00 0.00 3.36
283 284 9.260002 TCTGTTTCATTTCTTTTTCCTTATTGC 57.740 29.630 0.00 0.00 0.00 3.56
284 285 9.264719 CTGTTTCATTTCTTTTTCCTTATTGCT 57.735 29.630 0.00 0.00 0.00 3.91
285 286 9.044150 TGTTTCATTTCTTTTTCCTTATTGCTG 57.956 29.630 0.00 0.00 0.00 4.41
286 287 9.260002 GTTTCATTTCTTTTTCCTTATTGCTGA 57.740 29.630 0.00 0.00 0.00 4.26
290 291 9.859427 CATTTCTTTTTCCTTATTGCTGATACA 57.141 29.630 0.00 0.00 0.00 2.29
292 293 9.691362 TTTCTTTTTCCTTATTGCTGATACAAC 57.309 29.630 0.00 0.00 31.03 3.32
293 294 7.826690 TCTTTTTCCTTATTGCTGATACAACC 58.173 34.615 0.00 0.00 31.03 3.77
294 295 5.811399 TTTCCTTATTGCTGATACAACCG 57.189 39.130 0.00 0.00 31.03 4.44
295 296 4.746535 TCCTTATTGCTGATACAACCGA 57.253 40.909 0.00 0.00 31.03 4.69
296 297 5.092554 TCCTTATTGCTGATACAACCGAA 57.907 39.130 0.00 0.00 31.03 4.30
297 298 5.492895 TCCTTATTGCTGATACAACCGAAA 58.507 37.500 0.00 0.00 31.03 3.46
298 299 5.584649 TCCTTATTGCTGATACAACCGAAAG 59.415 40.000 0.00 0.00 31.03 2.62
299 300 3.764885 ATTGCTGATACAACCGAAAGC 57.235 42.857 0.00 0.00 31.03 3.51
300 301 1.448985 TGCTGATACAACCGAAAGCC 58.551 50.000 0.00 0.00 0.00 4.35
301 302 1.003118 TGCTGATACAACCGAAAGCCT 59.997 47.619 0.00 0.00 0.00 4.58
302 303 2.235155 TGCTGATACAACCGAAAGCCTA 59.765 45.455 0.00 0.00 0.00 3.93
303 304 2.866762 GCTGATACAACCGAAAGCCTAG 59.133 50.000 0.00 0.00 0.00 3.02
304 305 2.866762 CTGATACAACCGAAAGCCTAGC 59.133 50.000 0.00 0.00 0.00 3.42
305 306 2.500098 TGATACAACCGAAAGCCTAGCT 59.500 45.455 0.00 0.00 42.56 3.32
306 307 3.702548 TGATACAACCGAAAGCCTAGCTA 59.297 43.478 0.00 0.00 38.25 3.32
307 308 4.160814 TGATACAACCGAAAGCCTAGCTAA 59.839 41.667 0.00 0.00 38.25 3.09
308 309 2.696506 ACAACCGAAAGCCTAGCTAAC 58.303 47.619 0.00 0.00 38.25 2.34
309 310 2.038033 ACAACCGAAAGCCTAGCTAACA 59.962 45.455 0.00 0.00 38.25 2.41
310 311 3.071479 CAACCGAAAGCCTAGCTAACAA 58.929 45.455 0.00 0.00 38.25 2.83
311 312 3.412237 ACCGAAAGCCTAGCTAACAAA 57.588 42.857 0.00 0.00 38.25 2.83
312 313 3.072211 ACCGAAAGCCTAGCTAACAAAC 58.928 45.455 0.00 0.00 38.25 2.93
313 314 2.418976 CCGAAAGCCTAGCTAACAAACC 59.581 50.000 0.00 0.00 38.25 3.27
314 315 2.418976 CGAAAGCCTAGCTAACAAACCC 59.581 50.000 0.00 0.00 38.25 4.11
315 316 2.509166 AAGCCTAGCTAACAAACCCC 57.491 50.000 0.00 0.00 38.25 4.95
316 317 0.252197 AGCCTAGCTAACAAACCCCG 59.748 55.000 0.00 0.00 36.99 5.73
317 318 0.251073 GCCTAGCTAACAAACCCCGA 59.749 55.000 0.00 0.00 0.00 5.14
318 319 2.010544 GCCTAGCTAACAAACCCCGAC 61.011 57.143 0.00 0.00 0.00 4.79
319 320 1.406477 CCTAGCTAACAAACCCCGACC 60.406 57.143 0.00 0.00 0.00 4.79
320 321 1.276989 CTAGCTAACAAACCCCGACCA 59.723 52.381 0.00 0.00 0.00 4.02
321 322 0.036306 AGCTAACAAACCCCGACCAG 59.964 55.000 0.00 0.00 0.00 4.00
322 323 1.583495 GCTAACAAACCCCGACCAGC 61.583 60.000 0.00 0.00 0.00 4.85
323 324 0.958876 CTAACAAACCCCGACCAGCC 60.959 60.000 0.00 0.00 0.00 4.85
324 325 2.414658 TAACAAACCCCGACCAGCCC 62.415 60.000 0.00 0.00 0.00 5.19
333 334 2.202756 GACCAGCCCGTCGTGATC 60.203 66.667 0.00 0.00 0.00 2.92
334 335 3.718210 GACCAGCCCGTCGTGATCC 62.718 68.421 0.00 0.00 0.00 3.36
335 336 4.873129 CCAGCCCGTCGTGATCCG 62.873 72.222 0.00 0.00 38.13 4.18
336 337 4.873129 CAGCCCGTCGTGATCCGG 62.873 72.222 0.00 0.00 43.82 5.14
342 343 3.569916 CGTCGTGATCCGGATTGAT 57.430 52.632 20.22 0.00 37.11 2.57
343 344 1.409412 CGTCGTGATCCGGATTGATC 58.591 55.000 20.22 7.17 41.27 2.92
344 345 1.409412 GTCGTGATCCGGATTGATCG 58.591 55.000 20.22 19.04 43.34 3.69
345 346 0.318699 TCGTGATCCGGATTGATCGC 60.319 55.000 20.22 12.31 44.84 4.58
346 347 2.145225 GTGATCCGGATTGATCGCG 58.855 57.895 20.22 0.00 43.34 5.87
347 348 1.664649 TGATCCGGATTGATCGCGC 60.665 57.895 20.22 3.28 43.34 6.86
348 349 2.357517 ATCCGGATTGATCGCGCC 60.358 61.111 12.38 0.00 0.00 6.53
349 350 3.163832 ATCCGGATTGATCGCGCCA 62.164 57.895 12.38 0.00 0.00 5.69
350 351 2.454832 ATCCGGATTGATCGCGCCAT 62.455 55.000 12.38 0.00 0.00 4.40
351 352 2.671177 CCGGATTGATCGCGCCATC 61.671 63.158 8.17 8.17 0.00 3.51
352 353 2.671177 CGGATTGATCGCGCCATCC 61.671 63.158 12.62 8.37 0.00 3.51
353 354 2.328099 GGATTGATCGCGCCATCCC 61.328 63.158 12.62 2.90 0.00 3.85
354 355 1.597854 GATTGATCGCGCCATCCCA 60.598 57.895 12.62 0.00 0.00 4.37
355 356 1.845809 GATTGATCGCGCCATCCCAC 61.846 60.000 12.62 0.18 0.00 4.61
356 357 4.889856 TGATCGCGCCATCCCACG 62.890 66.667 12.62 0.00 0.00 4.94
357 358 4.585526 GATCGCGCCATCCCACGA 62.586 66.667 3.31 0.00 39.11 4.35
358 359 4.891727 ATCGCGCCATCCCACGAC 62.892 66.667 0.00 0.00 37.37 4.34
362 363 4.530857 CGCCATCCCACGACCTCC 62.531 72.222 0.00 0.00 0.00 4.30
363 364 3.083997 GCCATCCCACGACCTCCT 61.084 66.667 0.00 0.00 0.00 3.69
364 365 2.670148 GCCATCCCACGACCTCCTT 61.670 63.158 0.00 0.00 0.00 3.36
365 366 1.522569 CCATCCCACGACCTCCTTC 59.477 63.158 0.00 0.00 0.00 3.46
366 367 1.264749 CCATCCCACGACCTCCTTCA 61.265 60.000 0.00 0.00 0.00 3.02
367 368 0.108138 CATCCCACGACCTCCTTCAC 60.108 60.000 0.00 0.00 0.00 3.18
368 369 0.544357 ATCCCACGACCTCCTTCACA 60.544 55.000 0.00 0.00 0.00 3.58
369 370 1.004918 CCCACGACCTCCTTCACAC 60.005 63.158 0.00 0.00 0.00 3.82
370 371 1.745890 CCACGACCTCCTTCACACA 59.254 57.895 0.00 0.00 0.00 3.72
371 372 0.319900 CCACGACCTCCTTCACACAG 60.320 60.000 0.00 0.00 0.00 3.66
372 373 0.673985 CACGACCTCCTTCACACAGA 59.326 55.000 0.00 0.00 0.00 3.41
373 374 0.674534 ACGACCTCCTTCACACAGAC 59.325 55.000 0.00 0.00 0.00 3.51
374 375 0.387367 CGACCTCCTTCACACAGACG 60.387 60.000 0.00 0.00 0.00 4.18
375 376 0.674534 GACCTCCTTCACACAGACGT 59.325 55.000 0.00 0.00 0.00 4.34
394 395 2.344500 CCACGCTGACCGGGTTTA 59.656 61.111 6.32 0.00 39.18 2.01
395 396 2.030958 CCACGCTGACCGGGTTTAC 61.031 63.158 6.32 0.00 39.18 2.01
396 397 1.301087 CACGCTGACCGGGTTTACA 60.301 57.895 6.32 0.00 42.52 2.41
397 398 1.005394 ACGCTGACCGGGTTTACAG 60.005 57.895 6.32 5.52 42.52 2.74
398 399 1.290955 CGCTGACCGGGTTTACAGA 59.709 57.895 16.20 0.00 32.90 3.41
399 400 0.320073 CGCTGACCGGGTTTACAGAA 60.320 55.000 16.20 0.00 32.90 3.02
400 401 1.874739 CGCTGACCGGGTTTACAGAAA 60.875 52.381 16.20 0.00 32.90 2.52
401 402 2.223745 GCTGACCGGGTTTACAGAAAA 58.776 47.619 16.20 0.00 32.90 2.29
402 403 2.031420 GCTGACCGGGTTTACAGAAAAC 60.031 50.000 16.20 0.00 45.70 2.43
414 415 7.892778 GTTTACAGAAAACCAACAAAGGAAA 57.107 32.000 0.00 0.00 41.44 3.13
415 416 8.312896 GTTTACAGAAAACCAACAAAGGAAAA 57.687 30.769 0.00 0.00 41.44 2.29
416 417 8.775527 GTTTACAGAAAACCAACAAAGGAAAAA 58.224 29.630 0.00 0.00 41.44 1.94
433 434 3.940229 AAAAACGGGATAGTGCGGA 57.060 47.368 0.00 0.00 0.00 5.54
434 435 1.734163 AAAAACGGGATAGTGCGGAG 58.266 50.000 0.00 0.00 0.00 4.63
435 436 0.107848 AAAACGGGATAGTGCGGAGG 60.108 55.000 0.00 0.00 0.00 4.30
436 437 1.968050 AAACGGGATAGTGCGGAGGG 61.968 60.000 0.00 0.00 0.00 4.30
437 438 4.301027 CGGGATAGTGCGGAGGGC 62.301 72.222 0.00 0.00 43.96 5.19
456 457 2.184322 CGTCCCAGCTACGTGCAT 59.816 61.111 0.00 0.00 45.94 3.96
457 458 2.167219 CGTCCCAGCTACGTGCATG 61.167 63.158 3.82 3.82 45.94 4.06
458 459 2.125147 TCCCAGCTACGTGCATGC 60.125 61.111 11.82 11.82 45.94 4.06
459 460 2.124983 CCCAGCTACGTGCATGCT 60.125 61.111 20.33 0.40 45.94 3.79
461 462 2.402388 CAGCTACGTGCATGCTGC 59.598 61.111 20.33 14.35 45.76 5.25
470 471 3.280211 GCATGCTGCATGTGACCA 58.720 55.556 35.08 0.00 44.26 4.02
471 472 1.813859 GCATGCTGCATGTGACCAT 59.186 52.632 35.08 3.38 44.26 3.55
472 473 0.248907 GCATGCTGCATGTGACCATC 60.249 55.000 35.08 18.30 44.26 3.51
473 474 1.099689 CATGCTGCATGTGACCATCA 58.900 50.000 29.59 0.00 37.12 3.07
474 475 4.957318 GCATGCTGCATGTGACCATCAC 62.957 54.545 35.08 17.05 44.48 3.06
483 484 1.812235 GTGACCATCACATCAGTGCA 58.188 50.000 4.08 0.00 46.22 4.57
484 485 2.362736 GTGACCATCACATCAGTGCAT 58.637 47.619 4.08 0.00 46.22 3.96
485 486 2.096980 GTGACCATCACATCAGTGCATG 59.903 50.000 4.08 0.00 46.22 4.06
486 487 1.065102 GACCATCACATCAGTGCATGC 59.935 52.381 11.82 11.82 45.49 4.06
487 488 1.099689 CCATCACATCAGTGCATGCA 58.900 50.000 18.46 18.46 45.49 3.96
488 489 1.681264 CCATCACATCAGTGCATGCAT 59.319 47.619 25.64 10.23 45.49 3.96
489 490 2.882137 CCATCACATCAGTGCATGCATA 59.118 45.455 25.64 13.13 45.49 3.14
490 491 3.304458 CCATCACATCAGTGCATGCATAC 60.304 47.826 25.64 12.26 45.49 2.39
491 492 2.988570 TCACATCAGTGCATGCATACA 58.011 42.857 25.64 10.78 45.49 2.29
492 493 2.679336 TCACATCAGTGCATGCATACAC 59.321 45.455 25.64 20.45 45.49 2.90
493 494 2.420722 CACATCAGTGCATGCATACACA 59.579 45.455 27.61 11.88 39.21 3.72
494 495 3.083293 ACATCAGTGCATGCATACACAA 58.917 40.909 27.61 17.37 39.30 3.33
495 496 3.128068 ACATCAGTGCATGCATACACAAG 59.872 43.478 27.61 20.13 39.30 3.16
496 497 2.781923 TCAGTGCATGCATACACAAGT 58.218 42.857 27.61 8.42 39.30 3.16
497 498 3.148412 TCAGTGCATGCATACACAAGTT 58.852 40.909 27.61 8.08 39.30 2.66
498 499 3.569277 TCAGTGCATGCATACACAAGTTT 59.431 39.130 27.61 7.73 39.30 2.66
499 500 4.759183 TCAGTGCATGCATACACAAGTTTA 59.241 37.500 27.61 7.21 39.30 2.01
500 501 5.240403 TCAGTGCATGCATACACAAGTTTAA 59.760 36.000 27.61 5.48 39.30 1.52
501 502 5.919707 CAGTGCATGCATACACAAGTTTAAA 59.080 36.000 27.61 0.00 39.30 1.52
502 503 6.420306 CAGTGCATGCATACACAAGTTTAAAA 59.580 34.615 27.61 0.00 39.30 1.52
503 504 6.420604 AGTGCATGCATACACAAGTTTAAAAC 59.579 34.615 27.61 4.19 39.30 2.43
504 505 6.199908 GTGCATGCATACACAAGTTTAAAACA 59.800 34.615 25.64 0.00 36.77 2.83
505 506 6.420306 TGCATGCATACACAAGTTTAAAACAG 59.580 34.615 18.46 0.00 0.00 3.16
506 507 6.640499 GCATGCATACACAAGTTTAAAACAGA 59.360 34.615 14.21 0.00 0.00 3.41
507 508 7.168972 GCATGCATACACAAGTTTAAAACAGAA 59.831 33.333 14.21 0.00 0.00 3.02
508 509 9.029243 CATGCATACACAAGTTTAAAACAGAAA 57.971 29.630 0.00 0.00 0.00 2.52
509 510 8.988064 TGCATACACAAGTTTAAAACAGAAAA 57.012 26.923 0.00 0.00 0.00 2.29
510 511 9.424319 TGCATACACAAGTTTAAAACAGAAAAA 57.576 25.926 0.00 0.00 0.00 1.94
515 516 8.931775 ACACAAGTTTAAAACAGAAAAATGACC 58.068 29.630 0.00 0.00 0.00 4.02
516 517 8.387354 CACAAGTTTAAAACAGAAAAATGACCC 58.613 33.333 0.00 0.00 0.00 4.46
517 518 8.318412 ACAAGTTTAAAACAGAAAAATGACCCT 58.682 29.630 0.00 0.00 0.00 4.34
518 519 9.810545 CAAGTTTAAAACAGAAAAATGACCCTA 57.189 29.630 0.00 0.00 0.00 3.53
520 521 9.197306 AGTTTAAAACAGAAAAATGACCCTAGT 57.803 29.630 0.00 0.00 0.00 2.57
521 522 9.244799 GTTTAAAACAGAAAAATGACCCTAGTG 57.755 33.333 0.00 0.00 0.00 2.74
522 523 6.405278 AAAACAGAAAAATGACCCTAGTGG 57.595 37.500 0.00 0.00 41.37 4.00
534 535 2.065899 CCTAGTGGTCTGAGGGAGAG 57.934 60.000 0.00 0.00 0.00 3.20
541 542 3.744238 GGTCTGAGGGAGAGCTTATTC 57.256 52.381 0.00 0.00 44.54 1.75
542 543 3.304829 GGTCTGAGGGAGAGCTTATTCT 58.695 50.000 0.00 0.00 44.54 2.40
543 544 4.475345 GGTCTGAGGGAGAGCTTATTCTA 58.525 47.826 0.00 0.00 44.54 2.10
544 545 5.083821 GGTCTGAGGGAGAGCTTATTCTAT 58.916 45.833 0.00 0.00 44.54 1.98
545 546 5.185056 GGTCTGAGGGAGAGCTTATTCTATC 59.815 48.000 0.00 0.00 44.54 2.08
546 547 5.772672 GTCTGAGGGAGAGCTTATTCTATCA 59.227 44.000 0.00 0.00 0.00 2.15
575 577 4.760204 CACCTTCCTACTTTTTCAACCGAT 59.240 41.667 0.00 0.00 0.00 4.18
577 579 6.092259 CACCTTCCTACTTTTTCAACCGATAG 59.908 42.308 0.00 0.00 0.00 2.08
590 592 1.589993 CGATAGAGCAGGGCACACG 60.590 63.158 0.00 0.00 39.76 4.49
682 888 4.038042 ACGTACTACATGGACTCCATCATG 59.962 45.833 7.69 1.64 43.15 3.07
703 910 8.578308 TCATGCAAACAATAGAAAAAGAACAG 57.422 30.769 0.00 0.00 0.00 3.16
747 955 2.543777 TTCTCCCTCGTTTTGTCAGG 57.456 50.000 0.00 0.00 0.00 3.86
751 959 1.202879 TCCCTCGTTTTGTCAGGCAAT 60.203 47.619 0.00 0.00 36.89 3.56
752 960 1.068333 CCCTCGTTTTGTCAGGCAATG 60.068 52.381 0.00 0.00 36.89 2.82
753 961 1.068333 CCTCGTTTTGTCAGGCAATGG 60.068 52.381 0.00 0.00 36.89 3.16
754 962 1.608590 CTCGTTTTGTCAGGCAATGGT 59.391 47.619 0.00 0.00 36.89 3.55
755 963 1.336440 TCGTTTTGTCAGGCAATGGTG 59.664 47.619 0.00 0.00 36.89 4.17
759 967 0.106268 TTGTCAGGCAATGGTGTGGT 60.106 50.000 0.00 0.00 31.07 4.16
899 1113 0.107165 GGCAGCCTTTACCTTCGGAT 60.107 55.000 3.29 0.00 0.00 4.18
900 1114 1.682087 GGCAGCCTTTACCTTCGGATT 60.682 52.381 3.29 0.00 0.00 3.01
942 1156 2.038295 TCCATACATCACACACACAGCA 59.962 45.455 0.00 0.00 0.00 4.41
982 1196 1.754621 TCGGCCGAGAAGAGCAGAT 60.755 57.895 27.28 0.00 0.00 2.90
1087 1357 1.888436 GACCCTGGTCGCTCACATCA 61.888 60.000 0.00 0.00 35.30 3.07
1243 4148 1.953138 GACGCCATCATCCAGCTCG 60.953 63.158 0.00 0.00 0.00 5.03
1683 5125 0.601558 GACTTCTGGGTCACGCTGTA 59.398 55.000 0.00 0.00 36.35 2.74
1707 5149 1.241165 CAAGCTGGTGACATGCAGAA 58.759 50.000 0.00 0.00 41.51 3.02
1804 5250 6.484818 CAATTTTTATTGGAAACCAGGCAG 57.515 37.500 0.00 0.00 33.81 4.85
1813 5259 0.465287 AAACCAGGCAGGCAAACAAG 59.535 50.000 0.00 0.00 43.14 3.16
1815 5261 1.109323 ACCAGGCAGGCAAACAAGAC 61.109 55.000 0.00 0.00 43.14 3.01
1866 5315 3.620488 CAAAGTAGCTGGGCCAGATTAA 58.380 45.455 37.07 14.61 32.44 1.40
1867 5316 4.016444 CAAAGTAGCTGGGCCAGATTAAA 58.984 43.478 37.07 13.76 32.44 1.52
1868 5317 4.316025 AAGTAGCTGGGCCAGATTAAAA 57.684 40.909 37.07 13.34 32.44 1.52
1869 5318 4.316025 AGTAGCTGGGCCAGATTAAAAA 57.684 40.909 37.07 12.90 32.44 1.94
1880 5329 6.370433 GCCAGATTAAAAAGGCAACAAAAA 57.630 33.333 9.70 0.00 46.26 1.94
1897 5346 7.096065 GCAACAAAAAGTAAACAAGCCTATGAG 60.096 37.037 0.00 0.00 0.00 2.90
1907 5356 1.127343 AGCCTATGAGCAGGGAAGTC 58.873 55.000 0.00 0.00 36.10 3.01
1913 5362 0.843309 TGAGCAGGGAAGTCACCAAA 59.157 50.000 0.00 0.00 0.00 3.28
1929 5378 4.629200 TCACCAAACAAGCAAAACAACATC 59.371 37.500 0.00 0.00 0.00 3.06
1931 5380 4.630940 ACCAAACAAGCAAAACAACATCAG 59.369 37.500 0.00 0.00 0.00 2.90
1936 5385 3.996150 AGCAAAACAACATCAGACCTG 57.004 42.857 0.00 0.00 0.00 4.00
1940 5389 4.624015 CAAAACAACATCAGACCTGCATT 58.376 39.130 0.00 0.00 0.00 3.56
1944 5393 3.254166 ACAACATCAGACCTGCATTTCAC 59.746 43.478 0.00 0.00 0.00 3.18
1945 5394 2.079158 ACATCAGACCTGCATTTCACG 58.921 47.619 0.00 0.00 0.00 4.35
1946 5395 2.289631 ACATCAGACCTGCATTTCACGA 60.290 45.455 0.00 0.00 0.00 4.35
1947 5396 2.084610 TCAGACCTGCATTTCACGAG 57.915 50.000 0.00 0.00 0.00 4.18
1948 5397 0.445436 CAGACCTGCATTTCACGAGC 59.555 55.000 0.00 0.00 0.00 5.03
1949 5398 0.035317 AGACCTGCATTTCACGAGCA 59.965 50.000 0.00 0.00 36.72 4.26
1950 5399 1.089920 GACCTGCATTTCACGAGCAT 58.910 50.000 0.00 0.00 37.68 3.79
1951 5400 1.063174 GACCTGCATTTCACGAGCATC 59.937 52.381 0.00 0.00 37.68 3.91
1952 5401 1.339438 ACCTGCATTTCACGAGCATCT 60.339 47.619 0.00 0.00 37.68 2.90
1953 5402 2.093500 ACCTGCATTTCACGAGCATCTA 60.093 45.455 0.00 0.00 37.68 1.98
1954 5403 2.286294 CCTGCATTTCACGAGCATCTAC 59.714 50.000 0.00 0.00 37.68 2.59
1955 5404 2.931969 CTGCATTTCACGAGCATCTACA 59.068 45.455 0.00 0.00 37.68 2.74
1956 5405 2.931969 TGCATTTCACGAGCATCTACAG 59.068 45.455 0.00 0.00 32.55 2.74
1957 5406 2.286067 GCATTTCACGAGCATCTACAGC 60.286 50.000 0.00 0.00 0.00 4.40
1958 5407 2.010145 TTTCACGAGCATCTACAGCC 57.990 50.000 0.00 0.00 0.00 4.85
1959 5408 0.179137 TTCACGAGCATCTACAGCCG 60.179 55.000 0.00 0.00 33.79 5.52
1960 5409 1.589993 CACGAGCATCTACAGCCGG 60.590 63.158 0.00 0.00 32.52 6.13
1961 5410 2.052690 ACGAGCATCTACAGCCGGT 61.053 57.895 1.90 0.00 32.52 5.28
1962 5411 1.299468 CGAGCATCTACAGCCGGTC 60.299 63.158 1.90 0.00 0.00 4.79
1963 5412 1.729470 CGAGCATCTACAGCCGGTCT 61.729 60.000 1.90 0.00 0.00 3.85
1964 5413 0.031449 GAGCATCTACAGCCGGTCTC 59.969 60.000 1.90 0.00 0.00 3.36
1965 5414 0.684479 AGCATCTACAGCCGGTCTCA 60.684 55.000 1.90 0.00 0.00 3.27
1966 5415 0.390860 GCATCTACAGCCGGTCTCAT 59.609 55.000 1.90 0.00 0.00 2.90
1967 5416 1.613925 GCATCTACAGCCGGTCTCATA 59.386 52.381 1.90 0.00 0.00 2.15
1968 5417 2.608261 GCATCTACAGCCGGTCTCATAC 60.608 54.545 1.90 0.00 0.00 2.39
1969 5418 1.306148 TCTACAGCCGGTCTCATACG 58.694 55.000 1.90 0.00 0.00 3.06
1974 5423 2.417516 CCGGTCTCATACGGCCAG 59.582 66.667 2.24 0.00 43.96 4.85
1975 5424 2.417516 CGGTCTCATACGGCCAGG 59.582 66.667 2.24 0.00 0.00 4.45
1976 5425 2.109181 GGTCTCATACGGCCAGGC 59.891 66.667 1.26 1.26 0.00 4.85
1977 5426 2.279517 GTCTCATACGGCCAGGCG 60.280 66.667 12.45 12.45 0.00 5.52
1978 5427 3.536917 TCTCATACGGCCAGGCGG 61.537 66.667 17.32 17.32 35.02 6.13
1979 5428 3.536917 CTCATACGGCCAGGCGGA 61.537 66.667 25.16 14.02 33.14 5.54
1980 5429 3.792053 CTCATACGGCCAGGCGGAC 62.792 68.421 25.16 0.57 36.68 4.79
1981 5430 4.910585 CATACGGCCAGGCGGACC 62.911 72.222 25.16 0.16 36.69 4.46
1993 5442 3.521605 CGGACCGCCTGATCACTA 58.478 61.111 0.00 0.00 0.00 2.74
1994 5443 2.041976 CGGACCGCCTGATCACTAT 58.958 57.895 0.00 0.00 0.00 2.12
1995 5444 0.039074 CGGACCGCCTGATCACTATC 60.039 60.000 0.00 0.00 0.00 2.08
1996 5445 0.039074 GGACCGCCTGATCACTATCG 60.039 60.000 0.00 0.00 34.60 2.92
1997 5446 0.039074 GACCGCCTGATCACTATCGG 60.039 60.000 14.77 14.77 42.24 4.18
2005 5454 4.392921 CTGATCACTATCGGGTCACTTT 57.607 45.455 0.00 0.00 35.20 2.66
2006 5455 4.759782 CTGATCACTATCGGGTCACTTTT 58.240 43.478 0.00 0.00 35.20 2.27
2007 5456 5.160607 TGATCACTATCGGGTCACTTTTT 57.839 39.130 0.00 0.00 34.60 1.94
2023 5472 2.467566 TTTTTGTCTAGACGGCCCTC 57.532 50.000 17.85 0.00 0.00 4.30
2024 5473 1.640917 TTTTGTCTAGACGGCCCTCT 58.359 50.000 17.85 9.36 0.00 3.69
2025 5474 1.183549 TTTGTCTAGACGGCCCTCTC 58.816 55.000 17.85 0.00 0.00 3.20
2026 5475 0.039180 TTGTCTAGACGGCCCTCTCA 59.961 55.000 17.85 0.00 0.00 3.27
2027 5476 0.039180 TGTCTAGACGGCCCTCTCAA 59.961 55.000 17.85 0.00 0.00 3.02
2028 5477 1.183549 GTCTAGACGGCCCTCTCAAA 58.816 55.000 7.22 0.00 0.00 2.69
2029 5478 1.135053 GTCTAGACGGCCCTCTCAAAC 60.135 57.143 7.22 2.09 0.00 2.93
2030 5479 0.895530 CTAGACGGCCCTCTCAAACA 59.104 55.000 7.61 0.00 0.00 2.83
2031 5480 0.606604 TAGACGGCCCTCTCAAACAC 59.393 55.000 7.61 0.00 0.00 3.32
2032 5481 2.027625 GACGGCCCTCTCAAACACG 61.028 63.158 0.00 0.00 0.00 4.49
2033 5482 2.030562 CGGCCCTCTCAAACACGT 59.969 61.111 0.00 0.00 0.00 4.49
2034 5483 1.597027 CGGCCCTCTCAAACACGTT 60.597 57.895 0.00 0.00 0.00 3.99
2035 5484 0.320073 CGGCCCTCTCAAACACGTTA 60.320 55.000 0.00 0.00 0.00 3.18
2036 5485 1.439679 GGCCCTCTCAAACACGTTAG 58.560 55.000 0.00 0.00 0.00 2.34
2037 5486 0.796927 GCCCTCTCAAACACGTTAGC 59.203 55.000 0.00 0.00 0.00 3.09
2038 5487 1.608283 GCCCTCTCAAACACGTTAGCT 60.608 52.381 0.00 0.00 0.00 3.32
2039 5488 2.069273 CCCTCTCAAACACGTTAGCTG 58.931 52.381 0.00 0.00 0.00 4.24
2040 5489 2.288825 CCCTCTCAAACACGTTAGCTGA 60.289 50.000 0.00 0.00 0.00 4.26
2041 5490 3.589988 CCTCTCAAACACGTTAGCTGAT 58.410 45.455 0.00 0.00 0.00 2.90
2042 5491 3.614616 CCTCTCAAACACGTTAGCTGATC 59.385 47.826 0.00 0.00 0.00 2.92
2043 5492 3.242518 TCTCAAACACGTTAGCTGATCG 58.757 45.455 0.00 0.52 0.00 3.69
2044 5493 2.333926 TCAAACACGTTAGCTGATCGG 58.666 47.619 0.00 0.00 0.00 4.18
2045 5494 2.066262 CAAACACGTTAGCTGATCGGT 58.934 47.619 2.89 0.00 0.00 4.69
2046 5495 3.057386 TCAAACACGTTAGCTGATCGGTA 60.057 43.478 2.89 0.00 0.00 4.02
2047 5496 3.795623 AACACGTTAGCTGATCGGTAT 57.204 42.857 2.89 0.00 0.00 2.73
2048 5497 3.795623 ACACGTTAGCTGATCGGTATT 57.204 42.857 2.89 0.00 0.00 1.89
2049 5498 3.703420 ACACGTTAGCTGATCGGTATTC 58.297 45.455 2.89 0.00 0.00 1.75
2050 5499 3.050619 CACGTTAGCTGATCGGTATTCC 58.949 50.000 2.89 0.00 0.00 3.01
2051 5500 2.957006 ACGTTAGCTGATCGGTATTCCT 59.043 45.455 2.89 0.00 0.00 3.36
2052 5501 3.004524 ACGTTAGCTGATCGGTATTCCTC 59.995 47.826 2.89 0.00 0.00 3.71
2053 5502 3.004419 CGTTAGCTGATCGGTATTCCTCA 59.996 47.826 2.89 0.00 0.00 3.86
2054 5503 4.321304 CGTTAGCTGATCGGTATTCCTCAT 60.321 45.833 2.89 0.00 0.00 2.90
2055 5504 5.106277 CGTTAGCTGATCGGTATTCCTCATA 60.106 44.000 2.89 0.00 0.00 2.15
2056 5505 6.404844 CGTTAGCTGATCGGTATTCCTCATAT 60.405 42.308 2.89 0.00 0.00 1.78
2057 5506 5.590530 AGCTGATCGGTATTCCTCATATC 57.409 43.478 2.89 0.00 0.00 1.63
2058 5507 4.404073 AGCTGATCGGTATTCCTCATATCC 59.596 45.833 2.89 0.00 0.00 2.59
2059 5508 4.160439 GCTGATCGGTATTCCTCATATCCA 59.840 45.833 2.89 0.00 0.00 3.41
2060 5509 5.680922 GCTGATCGGTATTCCTCATATCCAG 60.681 48.000 2.89 0.00 0.00 3.86
2061 5510 4.160439 TGATCGGTATTCCTCATATCCAGC 59.840 45.833 0.00 0.00 0.00 4.85
2062 5511 2.832129 TCGGTATTCCTCATATCCAGCC 59.168 50.000 0.00 0.00 0.00 4.85
2063 5512 2.093447 CGGTATTCCTCATATCCAGCCC 60.093 54.545 0.00 0.00 0.00 5.19
2064 5513 2.912956 GGTATTCCTCATATCCAGCCCA 59.087 50.000 0.00 0.00 0.00 5.36
2065 5514 3.330701 GGTATTCCTCATATCCAGCCCAA 59.669 47.826 0.00 0.00 0.00 4.12
2066 5515 4.202567 GGTATTCCTCATATCCAGCCCAAA 60.203 45.833 0.00 0.00 0.00 3.28
2067 5516 4.754411 ATTCCTCATATCCAGCCCAAAT 57.246 40.909 0.00 0.00 0.00 2.32
2068 5517 5.865977 ATTCCTCATATCCAGCCCAAATA 57.134 39.130 0.00 0.00 0.00 1.40
2069 5518 4.640771 TCCTCATATCCAGCCCAAATAC 57.359 45.455 0.00 0.00 0.00 1.89
2070 5519 3.980022 TCCTCATATCCAGCCCAAATACA 59.020 43.478 0.00 0.00 0.00 2.29
2071 5520 4.415179 TCCTCATATCCAGCCCAAATACAA 59.585 41.667 0.00 0.00 0.00 2.41
2072 5521 5.103728 TCCTCATATCCAGCCCAAATACAAA 60.104 40.000 0.00 0.00 0.00 2.83
2073 5522 5.242393 CCTCATATCCAGCCCAAATACAAAG 59.758 44.000 0.00 0.00 0.00 2.77
2074 5523 4.584325 TCATATCCAGCCCAAATACAAAGC 59.416 41.667 0.00 0.00 0.00 3.51
2075 5524 1.173043 TCCAGCCCAAATACAAAGCG 58.827 50.000 0.00 0.00 0.00 4.68
2076 5525 0.173255 CCAGCCCAAATACAAAGCGG 59.827 55.000 0.00 0.00 0.00 5.52
2077 5526 1.173043 CAGCCCAAATACAAAGCGGA 58.827 50.000 0.00 0.00 0.00 5.54
2078 5527 1.750778 CAGCCCAAATACAAAGCGGAT 59.249 47.619 0.00 0.00 0.00 4.18
2079 5528 2.948979 CAGCCCAAATACAAAGCGGATA 59.051 45.455 0.00 0.00 0.00 2.59
2080 5529 3.569701 CAGCCCAAATACAAAGCGGATAT 59.430 43.478 0.00 0.00 0.00 1.63
2081 5530 4.759693 CAGCCCAAATACAAAGCGGATATA 59.240 41.667 0.00 0.00 0.00 0.86
2082 5531 5.003804 AGCCCAAATACAAAGCGGATATAG 58.996 41.667 0.00 0.00 0.00 1.31
2083 5532 4.156008 GCCCAAATACAAAGCGGATATAGG 59.844 45.833 0.00 0.00 0.00 2.57
2084 5533 5.556915 CCCAAATACAAAGCGGATATAGGA 58.443 41.667 0.00 0.00 0.00 2.94
2085 5534 5.411669 CCCAAATACAAAGCGGATATAGGAC 59.588 44.000 0.00 0.00 0.00 3.85
2086 5535 5.120208 CCAAATACAAAGCGGATATAGGACG 59.880 44.000 0.00 0.00 0.00 4.79
2115 5564 3.625897 CTCACGCTGGTCCACCCA 61.626 66.667 0.00 0.00 42.51 4.51
2129 5578 3.636764 GTCCACCCAATCCCACATAAATC 59.363 47.826 0.00 0.00 0.00 2.17
2136 5585 4.387891 CCAATCCCACATAAATCCCTTCCT 60.388 45.833 0.00 0.00 0.00 3.36
2163 5612 1.302993 GCCGGACCAAACCTTAGCA 60.303 57.895 5.05 0.00 0.00 3.49
2177 5631 2.040412 CCTTAGCAACTTCACTCCCCTT 59.960 50.000 0.00 0.00 0.00 3.95
2189 5643 2.184631 TCCCCTTCCCTCCACTCCT 61.185 63.158 0.00 0.00 0.00 3.69
2195 5649 1.801302 TTCCCTCCACTCCTCTCCGT 61.801 60.000 0.00 0.00 0.00 4.69
2200 5654 1.304547 CCACTCCTCTCCGTCACCT 60.305 63.158 0.00 0.00 0.00 4.00
2264 5789 2.758327 CCAGATCCGTCGACCCCA 60.758 66.667 10.58 0.00 0.00 4.96
2266 5791 1.594833 CAGATCCGTCGACCCCAAA 59.405 57.895 10.58 0.00 0.00 3.28
2658 6272 1.337728 CCATATGGCGCATTAGTCCGA 60.338 52.381 9.29 0.00 0.00 4.55
2659 6273 1.995484 CATATGGCGCATTAGTCCGAG 59.005 52.381 10.83 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.875963 GGCAGTGTTTGATCCGTGG 59.124 57.895 0.00 0.00 0.00 4.94
92 93 1.497278 CGGCAGTGTTTGATCCGTG 59.503 57.895 0.00 0.00 35.75 4.94
93 94 1.671054 CCGGCAGTGTTTGATCCGT 60.671 57.895 0.00 0.00 38.54 4.69
94 95 3.039202 GCCGGCAGTGTTTGATCCG 62.039 63.158 24.80 0.00 39.79 4.18
95 96 2.700773 GGCCGGCAGTGTTTGATCC 61.701 63.158 30.85 1.22 0.00 3.36
96 97 1.971167 TGGCCGGCAGTGTTTGATC 60.971 57.895 30.85 6.94 0.00 2.92
97 98 2.115052 TGGCCGGCAGTGTTTGAT 59.885 55.556 30.85 0.00 0.00 2.57
98 99 2.904866 GTGGCCGGCAGTGTTTGA 60.905 61.111 30.85 0.00 0.00 2.69
99 100 3.977244 GGTGGCCGGCAGTGTTTG 61.977 66.667 30.85 0.00 0.00 2.93
110 111 4.554036 GATCCTGCTCCGGTGGCC 62.554 72.222 16.68 0.00 0.00 5.36
111 112 2.819984 TTTGATCCTGCTCCGGTGGC 62.820 60.000 13.57 13.57 0.00 5.01
112 113 1.026718 GTTTGATCCTGCTCCGGTGG 61.027 60.000 0.00 0.00 0.00 4.61
113 114 0.321564 TGTTTGATCCTGCTCCGGTG 60.322 55.000 0.00 0.00 0.00 4.94
114 115 0.321653 GTGTTTGATCCTGCTCCGGT 60.322 55.000 0.00 0.00 0.00 5.28
115 116 1.026718 GGTGTTTGATCCTGCTCCGG 61.027 60.000 0.00 0.00 0.00 5.14
116 117 0.321564 TGGTGTTTGATCCTGCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
117 118 1.003580 TCTGGTGTTTGATCCTGCTCC 59.996 52.381 0.00 0.00 0.00 4.70
118 119 2.079925 GTCTGGTGTTTGATCCTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
119 120 1.701847 AGTCTGGTGTTTGATCCTGCT 59.298 47.619 0.00 0.00 0.00 4.24
120 121 2.079925 GAGTCTGGTGTTTGATCCTGC 58.920 52.381 0.00 0.00 0.00 4.85
121 122 2.704572 GGAGTCTGGTGTTTGATCCTG 58.295 52.381 0.00 0.00 0.00 3.86
122 123 1.276421 CGGAGTCTGGTGTTTGATCCT 59.724 52.381 0.00 0.00 0.00 3.24
123 124 1.275291 TCGGAGTCTGGTGTTTGATCC 59.725 52.381 0.00 0.00 0.00 3.36
124 125 2.743636 TCGGAGTCTGGTGTTTGATC 57.256 50.000 0.00 0.00 0.00 2.92
125 126 2.936993 GCATCGGAGTCTGGTGTTTGAT 60.937 50.000 13.78 0.00 0.00 2.57
126 127 1.608025 GCATCGGAGTCTGGTGTTTGA 60.608 52.381 13.78 0.00 0.00 2.69
127 128 0.798776 GCATCGGAGTCTGGTGTTTG 59.201 55.000 13.78 0.00 0.00 2.93
128 129 0.321653 GGCATCGGAGTCTGGTGTTT 60.322 55.000 13.78 0.00 0.00 2.83
129 130 1.296715 GGCATCGGAGTCTGGTGTT 59.703 57.895 13.78 0.00 0.00 3.32
130 131 1.480212 TTGGCATCGGAGTCTGGTGT 61.480 55.000 13.78 0.00 0.00 4.16
131 132 0.107508 ATTGGCATCGGAGTCTGGTG 60.108 55.000 7.95 7.95 0.00 4.17
132 133 0.620556 AATTGGCATCGGAGTCTGGT 59.379 50.000 0.00 0.00 0.00 4.00
133 134 1.019673 CAATTGGCATCGGAGTCTGG 58.980 55.000 0.00 0.00 0.00 3.86
134 135 1.667724 GACAATTGGCATCGGAGTCTG 59.332 52.381 6.36 0.00 0.00 3.51
135 136 1.740380 CGACAATTGGCATCGGAGTCT 60.740 52.381 12.81 0.00 32.22 3.24
136 137 0.652592 CGACAATTGGCATCGGAGTC 59.347 55.000 12.81 0.00 32.22 3.36
137 138 0.036388 ACGACAATTGGCATCGGAGT 60.036 50.000 12.81 0.00 40.16 3.85
138 139 1.086696 AACGACAATTGGCATCGGAG 58.913 50.000 12.81 0.00 40.16 4.63
139 140 0.801872 CAACGACAATTGGCATCGGA 59.198 50.000 12.81 0.00 40.16 4.55
140 141 0.798009 GCAACGACAATTGGCATCGG 60.798 55.000 12.81 0.00 40.16 4.18
141 142 2.640684 GCAACGACAATTGGCATCG 58.359 52.632 12.81 13.25 41.60 3.84
155 156 1.789464 CTCGATCAGCTAATCGGCAAC 59.211 52.381 19.05 0.00 46.59 4.17
156 157 1.869754 GCTCGATCAGCTAATCGGCAA 60.870 52.381 19.05 0.00 46.59 4.52
157 158 0.319040 GCTCGATCAGCTAATCGGCA 60.319 55.000 19.05 0.00 46.59 5.69
158 159 2.439964 GCTCGATCAGCTAATCGGC 58.560 57.895 19.05 16.39 46.59 5.54
166 167 0.231790 GCATTCTTCGCTCGATCAGC 59.768 55.000 6.98 6.98 45.85 4.26
167 168 1.521840 CAGCATTCTTCGCTCGATCAG 59.478 52.381 0.00 0.00 37.72 2.90
168 169 1.134946 TCAGCATTCTTCGCTCGATCA 59.865 47.619 0.00 0.00 37.72 2.92
169 170 1.786004 CTCAGCATTCTTCGCTCGATC 59.214 52.381 0.00 0.00 37.72 3.69
170 171 1.850377 CTCAGCATTCTTCGCTCGAT 58.150 50.000 0.00 0.00 37.72 3.59
171 172 0.803768 GCTCAGCATTCTTCGCTCGA 60.804 55.000 0.00 0.00 37.72 4.04
172 173 0.805322 AGCTCAGCATTCTTCGCTCG 60.805 55.000 0.00 0.00 37.72 5.03
173 174 0.929615 GAGCTCAGCATTCTTCGCTC 59.070 55.000 9.40 0.00 37.72 5.03
174 175 0.248565 TGAGCTCAGCATTCTTCGCT 59.751 50.000 13.74 0.00 41.47 4.93
175 176 1.062294 CTTGAGCTCAGCATTCTTCGC 59.938 52.381 17.43 0.00 0.00 4.70
176 177 2.614779 TCTTGAGCTCAGCATTCTTCG 58.385 47.619 17.43 0.00 0.00 3.79
177 178 3.750130 TGTTCTTGAGCTCAGCATTCTTC 59.250 43.478 17.43 4.53 0.00 2.87
178 179 3.501445 GTGTTCTTGAGCTCAGCATTCTT 59.499 43.478 17.43 0.00 0.00 2.52
179 180 3.072944 GTGTTCTTGAGCTCAGCATTCT 58.927 45.455 17.43 0.00 0.00 2.40
180 181 2.159734 CGTGTTCTTGAGCTCAGCATTC 60.160 50.000 17.43 8.50 0.00 2.67
181 182 1.802960 CGTGTTCTTGAGCTCAGCATT 59.197 47.619 17.43 0.00 0.00 3.56
182 183 1.436600 CGTGTTCTTGAGCTCAGCAT 58.563 50.000 17.43 0.00 0.00 3.79
183 184 1.224069 GCGTGTTCTTGAGCTCAGCA 61.224 55.000 17.43 11.71 0.00 4.41
184 185 1.224069 TGCGTGTTCTTGAGCTCAGC 61.224 55.000 17.43 15.07 0.00 4.26
185 186 0.510359 GTGCGTGTTCTTGAGCTCAG 59.490 55.000 17.43 11.30 0.00 3.35
186 187 0.179086 TGTGCGTGTTCTTGAGCTCA 60.179 50.000 13.74 13.74 0.00 4.26
187 188 0.937304 TTGTGCGTGTTCTTGAGCTC 59.063 50.000 6.82 6.82 0.00 4.09
188 189 0.657840 GTTGTGCGTGTTCTTGAGCT 59.342 50.000 0.00 0.00 0.00 4.09
189 190 0.376852 TGTTGTGCGTGTTCTTGAGC 59.623 50.000 0.00 0.00 0.00 4.26
190 191 1.396648 TGTGTTGTGCGTGTTCTTGAG 59.603 47.619 0.00 0.00 0.00 3.02
191 192 1.129624 GTGTGTTGTGCGTGTTCTTGA 59.870 47.619 0.00 0.00 0.00 3.02
192 193 1.534028 GTGTGTTGTGCGTGTTCTTG 58.466 50.000 0.00 0.00 0.00 3.02
193 194 0.096281 CGTGTGTTGTGCGTGTTCTT 59.904 50.000 0.00 0.00 0.00 2.52
194 195 1.713246 CGTGTGTTGTGCGTGTTCT 59.287 52.632 0.00 0.00 0.00 3.01
195 196 1.932564 GCGTGTGTTGTGCGTGTTC 60.933 57.895 0.00 0.00 0.00 3.18
196 197 2.099446 GCGTGTGTTGTGCGTGTT 59.901 55.556 0.00 0.00 0.00 3.32
197 198 4.217111 CGCGTGTGTTGTGCGTGT 62.217 61.111 0.00 0.00 46.29 4.49
201 202 1.880601 CTCTCTCGCGTGTGTTGTGC 61.881 60.000 5.77 0.00 0.00 4.57
202 203 1.278172 CCTCTCTCGCGTGTGTTGTG 61.278 60.000 5.77 0.00 0.00 3.33
203 204 1.007271 CCTCTCTCGCGTGTGTTGT 60.007 57.895 5.77 0.00 0.00 3.32
204 205 0.318699 TTCCTCTCTCGCGTGTGTTG 60.319 55.000 5.77 2.88 0.00 3.33
205 206 0.387929 TTTCCTCTCTCGCGTGTGTT 59.612 50.000 5.77 0.00 0.00 3.32
206 207 0.039074 CTTTCCTCTCTCGCGTGTGT 60.039 55.000 5.77 0.00 0.00 3.72
207 208 1.347817 GCTTTCCTCTCTCGCGTGTG 61.348 60.000 5.77 4.72 0.00 3.82
208 209 1.080434 GCTTTCCTCTCTCGCGTGT 60.080 57.895 5.77 0.00 0.00 4.49
209 210 0.389166 AAGCTTTCCTCTCTCGCGTG 60.389 55.000 5.77 3.13 0.00 5.34
210 211 0.318762 AAAGCTTTCCTCTCTCGCGT 59.681 50.000 5.69 0.00 0.00 6.01
211 212 1.433534 AAAAGCTTTCCTCTCTCGCG 58.566 50.000 13.10 0.00 0.00 5.87
228 229 2.402305 CATTGTTAGCTGCGGCAAAAA 58.598 42.857 21.93 13.28 41.70 1.94
229 230 1.934399 GCATTGTTAGCTGCGGCAAAA 60.934 47.619 21.93 10.88 41.70 2.44
230 231 0.388391 GCATTGTTAGCTGCGGCAAA 60.388 50.000 21.93 8.81 41.70 3.68
231 232 1.212490 GCATTGTTAGCTGCGGCAA 59.788 52.632 21.93 9.29 41.70 4.52
232 233 2.699768 GGCATTGTTAGCTGCGGCA 61.700 57.895 21.93 1.29 41.70 5.69
233 234 2.102946 GGCATTGTTAGCTGCGGC 59.897 61.111 10.33 10.33 39.30 6.53
234 235 1.137404 GTGGCATTGTTAGCTGCGG 59.863 57.895 0.00 0.00 39.30 5.69
235 236 1.226101 CGTGGCATTGTTAGCTGCG 60.226 57.895 0.00 0.00 39.30 5.18
236 237 0.240945 AACGTGGCATTGTTAGCTGC 59.759 50.000 0.00 0.00 37.66 5.25
237 238 2.704725 AAACGTGGCATTGTTAGCTG 57.295 45.000 8.25 0.00 0.00 4.24
238 239 2.884639 AGAAAACGTGGCATTGTTAGCT 59.115 40.909 8.25 0.00 0.00 3.32
239 240 2.979813 CAGAAAACGTGGCATTGTTAGC 59.020 45.455 8.25 4.63 0.00 3.09
240 241 4.223320 ACAGAAAACGTGGCATTGTTAG 57.777 40.909 8.25 3.32 0.00 2.34
241 242 4.640789 AACAGAAAACGTGGCATTGTTA 57.359 36.364 8.25 0.00 0.00 2.41
242 243 3.518634 AACAGAAAACGTGGCATTGTT 57.481 38.095 0.00 0.00 0.00 2.83
243 244 3.119316 TGAAACAGAAAACGTGGCATTGT 60.119 39.130 0.00 0.00 0.00 2.71
244 245 3.443037 TGAAACAGAAAACGTGGCATTG 58.557 40.909 0.00 0.00 0.00 2.82
245 246 3.791973 TGAAACAGAAAACGTGGCATT 57.208 38.095 0.00 0.00 0.00 3.56
246 247 4.320608 AATGAAACAGAAAACGTGGCAT 57.679 36.364 0.00 0.00 0.00 4.40
247 248 3.791973 AATGAAACAGAAAACGTGGCA 57.208 38.095 0.00 0.00 0.00 4.92
248 249 4.359706 AGAAATGAAACAGAAAACGTGGC 58.640 39.130 0.00 0.00 0.00 5.01
249 250 6.885735 AAAGAAATGAAACAGAAAACGTGG 57.114 33.333 0.00 0.00 0.00 4.94
250 251 7.897800 GGAAAAAGAAATGAAACAGAAAACGTG 59.102 33.333 0.00 0.00 0.00 4.49
251 252 7.817478 AGGAAAAAGAAATGAAACAGAAAACGT 59.183 29.630 0.00 0.00 0.00 3.99
252 253 8.185003 AGGAAAAAGAAATGAAACAGAAAACG 57.815 30.769 0.00 0.00 0.00 3.60
257 258 9.260002 GCAATAAGGAAAAAGAAATGAAACAGA 57.740 29.630 0.00 0.00 0.00 3.41
258 259 9.264719 AGCAATAAGGAAAAAGAAATGAAACAG 57.735 29.630 0.00 0.00 0.00 3.16
259 260 9.044150 CAGCAATAAGGAAAAAGAAATGAAACA 57.956 29.630 0.00 0.00 0.00 2.83
260 261 9.260002 TCAGCAATAAGGAAAAAGAAATGAAAC 57.740 29.630 0.00 0.00 0.00 2.78
264 265 9.859427 TGTATCAGCAATAAGGAAAAAGAAATG 57.141 29.630 0.00 0.00 0.00 2.32
266 267 9.691362 GTTGTATCAGCAATAAGGAAAAAGAAA 57.309 29.630 0.00 0.00 0.00 2.52
267 268 8.303876 GGTTGTATCAGCAATAAGGAAAAAGAA 58.696 33.333 0.00 0.00 0.00 2.52
268 269 7.361713 CGGTTGTATCAGCAATAAGGAAAAAGA 60.362 37.037 0.00 0.00 0.00 2.52
269 270 6.747280 CGGTTGTATCAGCAATAAGGAAAAAG 59.253 38.462 0.00 0.00 0.00 2.27
270 271 6.431543 TCGGTTGTATCAGCAATAAGGAAAAA 59.568 34.615 0.00 0.00 0.00 1.94
271 272 5.941058 TCGGTTGTATCAGCAATAAGGAAAA 59.059 36.000 0.00 0.00 0.00 2.29
272 273 5.492895 TCGGTTGTATCAGCAATAAGGAAA 58.507 37.500 0.00 0.00 0.00 3.13
273 274 5.092554 TCGGTTGTATCAGCAATAAGGAA 57.907 39.130 0.00 0.00 0.00 3.36
274 275 4.746535 TCGGTTGTATCAGCAATAAGGA 57.253 40.909 0.00 0.00 0.00 3.36
275 276 5.730568 GCTTTCGGTTGTATCAGCAATAAGG 60.731 44.000 0.00 0.00 0.00 2.69
276 277 5.266242 GCTTTCGGTTGTATCAGCAATAAG 58.734 41.667 0.00 0.00 0.00 1.73
277 278 4.095782 GGCTTTCGGTTGTATCAGCAATAA 59.904 41.667 0.00 0.00 0.00 1.40
278 279 3.625764 GGCTTTCGGTTGTATCAGCAATA 59.374 43.478 0.00 0.00 0.00 1.90
279 280 2.423538 GGCTTTCGGTTGTATCAGCAAT 59.576 45.455 0.00 0.00 0.00 3.56
280 281 1.810151 GGCTTTCGGTTGTATCAGCAA 59.190 47.619 0.00 0.00 0.00 3.91
281 282 1.003118 AGGCTTTCGGTTGTATCAGCA 59.997 47.619 0.00 0.00 0.00 4.41
282 283 1.739067 AGGCTTTCGGTTGTATCAGC 58.261 50.000 0.00 0.00 0.00 4.26
283 284 2.866762 GCTAGGCTTTCGGTTGTATCAG 59.133 50.000 0.00 0.00 0.00 2.90
284 285 2.500098 AGCTAGGCTTTCGGTTGTATCA 59.500 45.455 0.00 0.00 33.89 2.15
285 286 3.180891 AGCTAGGCTTTCGGTTGTATC 57.819 47.619 0.00 0.00 33.89 2.24
286 287 4.081309 TGTTAGCTAGGCTTTCGGTTGTAT 60.081 41.667 0.00 0.00 40.44 2.29
287 288 3.258872 TGTTAGCTAGGCTTTCGGTTGTA 59.741 43.478 0.00 0.00 40.44 2.41
288 289 2.038033 TGTTAGCTAGGCTTTCGGTTGT 59.962 45.455 0.00 0.00 40.44 3.32
289 290 2.695359 TGTTAGCTAGGCTTTCGGTTG 58.305 47.619 0.00 0.00 40.44 3.77
290 291 3.412237 TTGTTAGCTAGGCTTTCGGTT 57.588 42.857 0.00 0.00 40.44 4.44
291 292 3.072211 GTTTGTTAGCTAGGCTTTCGGT 58.928 45.455 0.00 0.00 40.44 4.69
292 293 2.418976 GGTTTGTTAGCTAGGCTTTCGG 59.581 50.000 0.00 0.00 40.44 4.30
293 294 2.418976 GGGTTTGTTAGCTAGGCTTTCG 59.581 50.000 0.00 0.00 40.44 3.46
294 295 2.753452 GGGGTTTGTTAGCTAGGCTTTC 59.247 50.000 0.00 0.00 40.44 2.62
295 296 2.803956 GGGGTTTGTTAGCTAGGCTTT 58.196 47.619 0.00 0.00 40.44 3.51
296 297 1.339727 CGGGGTTTGTTAGCTAGGCTT 60.340 52.381 0.00 0.00 40.44 4.35
297 298 0.252197 CGGGGTTTGTTAGCTAGGCT 59.748 55.000 0.00 0.00 43.41 4.58
298 299 0.251073 TCGGGGTTTGTTAGCTAGGC 59.749 55.000 0.00 0.00 0.00 3.93
299 300 1.406477 GGTCGGGGTTTGTTAGCTAGG 60.406 57.143 0.00 0.00 0.00 3.02
300 301 1.276989 TGGTCGGGGTTTGTTAGCTAG 59.723 52.381 0.00 0.00 0.00 3.42
301 302 1.276989 CTGGTCGGGGTTTGTTAGCTA 59.723 52.381 0.00 0.00 0.00 3.32
302 303 0.036306 CTGGTCGGGGTTTGTTAGCT 59.964 55.000 0.00 0.00 0.00 3.32
303 304 1.583495 GCTGGTCGGGGTTTGTTAGC 61.583 60.000 0.00 0.00 0.00 3.09
304 305 0.958876 GGCTGGTCGGGGTTTGTTAG 60.959 60.000 0.00 0.00 0.00 2.34
305 306 1.073548 GGCTGGTCGGGGTTTGTTA 59.926 57.895 0.00 0.00 0.00 2.41
306 307 2.203437 GGCTGGTCGGGGTTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
307 308 4.280019 GGGCTGGTCGGGGTTTGT 62.280 66.667 0.00 0.00 0.00 2.83
316 317 2.202756 GATCACGACGGGCTGGTC 60.203 66.667 0.00 0.00 0.00 4.02
317 318 3.771160 GGATCACGACGGGCTGGT 61.771 66.667 0.00 0.00 0.00 4.00
326 327 3.905227 CGCGATCAATCCGGATCACGA 62.905 57.143 19.43 15.04 47.00 4.35
327 328 1.608966 CGCGATCAATCCGGATCACG 61.609 60.000 19.43 19.91 43.07 4.35
328 329 1.891060 GCGCGATCAATCCGGATCAC 61.891 60.000 19.43 8.56 43.07 3.06
329 330 1.664649 GCGCGATCAATCCGGATCA 60.665 57.895 19.43 8.06 43.07 2.92
330 331 2.383527 GGCGCGATCAATCCGGATC 61.384 63.158 19.43 4.87 40.22 3.36
331 332 2.357517 GGCGCGATCAATCCGGAT 60.358 61.111 12.38 12.38 0.00 4.18
332 333 3.163832 ATGGCGCGATCAATCCGGA 62.164 57.895 12.10 6.61 0.00 5.14
333 334 2.666190 ATGGCGCGATCAATCCGG 60.666 61.111 12.10 0.00 0.00 5.14
334 335 2.671177 GGATGGCGCGATCAATCCG 61.671 63.158 29.72 0.00 0.00 4.18
335 336 2.328099 GGGATGGCGCGATCAATCC 61.328 63.158 29.72 19.56 0.00 3.01
336 337 1.597854 TGGGATGGCGCGATCAATC 60.598 57.895 29.72 19.49 0.00 2.67
337 338 1.893808 GTGGGATGGCGCGATCAAT 60.894 57.895 29.72 6.32 0.00 2.57
338 339 2.513666 GTGGGATGGCGCGATCAA 60.514 61.111 29.72 16.90 0.00 2.57
339 340 4.889856 CGTGGGATGGCGCGATCA 62.890 66.667 29.72 11.76 0.00 2.92
340 341 4.585526 TCGTGGGATGGCGCGATC 62.586 66.667 22.62 22.62 0.00 3.69
341 342 4.891727 GTCGTGGGATGGCGCGAT 62.892 66.667 12.10 3.93 35.78 4.58
345 346 4.530857 GGAGGTCGTGGGATGGCG 62.531 72.222 0.00 0.00 0.00 5.69
346 347 2.595009 GAAGGAGGTCGTGGGATGGC 62.595 65.000 0.00 0.00 0.00 4.40
347 348 1.264749 TGAAGGAGGTCGTGGGATGG 61.265 60.000 0.00 0.00 0.00 3.51
348 349 0.108138 GTGAAGGAGGTCGTGGGATG 60.108 60.000 0.00 0.00 0.00 3.51
349 350 0.544357 TGTGAAGGAGGTCGTGGGAT 60.544 55.000 0.00 0.00 0.00 3.85
350 351 1.152419 TGTGAAGGAGGTCGTGGGA 60.152 57.895 0.00 0.00 0.00 4.37
351 352 1.004918 GTGTGAAGGAGGTCGTGGG 60.005 63.158 0.00 0.00 0.00 4.61
352 353 0.319900 CTGTGTGAAGGAGGTCGTGG 60.320 60.000 0.00 0.00 0.00 4.94
353 354 0.673985 TCTGTGTGAAGGAGGTCGTG 59.326 55.000 0.00 0.00 0.00 4.35
354 355 0.674534 GTCTGTGTGAAGGAGGTCGT 59.325 55.000 0.00 0.00 0.00 4.34
355 356 0.387367 CGTCTGTGTGAAGGAGGTCG 60.387 60.000 0.00 0.00 0.00 4.79
356 357 0.674534 ACGTCTGTGTGAAGGAGGTC 59.325 55.000 0.00 0.00 0.00 3.85
357 358 0.389391 CACGTCTGTGTGAAGGAGGT 59.611 55.000 0.00 0.00 42.55 3.85
358 359 3.201342 CACGTCTGTGTGAAGGAGG 57.799 57.895 0.00 0.00 42.55 4.30
368 369 3.911698 TCAGCGTGGCACGTCTGT 61.912 61.111 37.82 23.66 44.73 3.41
369 370 3.406361 GTCAGCGTGGCACGTCTG 61.406 66.667 36.23 36.23 44.73 3.51
370 371 4.664677 GGTCAGCGTGGCACGTCT 62.665 66.667 36.68 29.95 44.73 4.18
376 377 3.887335 TAAACCCGGTCAGCGTGGC 62.887 63.158 0.00 0.00 0.00 5.01
377 378 2.030958 GTAAACCCGGTCAGCGTGG 61.031 63.158 0.00 0.00 0.00 4.94
378 379 1.289109 CTGTAAACCCGGTCAGCGTG 61.289 60.000 0.00 0.00 0.00 5.34
379 380 1.005394 CTGTAAACCCGGTCAGCGT 60.005 57.895 0.00 0.00 0.00 5.07
380 381 0.320073 TTCTGTAAACCCGGTCAGCG 60.320 55.000 0.00 0.00 0.00 5.18
381 382 1.886886 TTTCTGTAAACCCGGTCAGC 58.113 50.000 0.00 0.00 0.00 4.26
382 383 3.891056 GTTTTCTGTAAACCCGGTCAG 57.109 47.619 0.00 1.20 40.21 3.51
390 391 7.892778 TTTCCTTTGTTGGTTTTCTGTAAAC 57.107 32.000 1.73 1.73 44.39 2.01
391 392 8.904099 TTTTTCCTTTGTTGGTTTTCTGTAAA 57.096 26.923 0.00 0.00 0.00 2.01
415 416 1.677820 CCTCCGCACTATCCCGTTTTT 60.678 52.381 0.00 0.00 0.00 1.94
416 417 0.107848 CCTCCGCACTATCCCGTTTT 60.108 55.000 0.00 0.00 0.00 2.43
417 418 1.520666 CCTCCGCACTATCCCGTTT 59.479 57.895 0.00 0.00 0.00 3.60
418 419 2.432300 CCCTCCGCACTATCCCGTT 61.432 63.158 0.00 0.00 0.00 4.44
419 420 2.838225 CCCTCCGCACTATCCCGT 60.838 66.667 0.00 0.00 0.00 5.28
420 421 4.301027 GCCCTCCGCACTATCCCG 62.301 72.222 0.00 0.00 37.47 5.14
421 422 3.161450 TGCCCTCCGCACTATCCC 61.161 66.667 0.00 0.00 44.64 3.85
439 440 2.167219 CATGCACGTAGCTGGGACG 61.167 63.158 5.98 5.98 45.94 4.79
440 441 2.464459 GCATGCACGTAGCTGGGAC 61.464 63.158 14.21 0.00 45.94 4.46
441 442 2.125147 GCATGCACGTAGCTGGGA 60.125 61.111 14.21 0.00 45.94 4.37
442 443 2.124983 AGCATGCACGTAGCTGGG 60.125 61.111 21.98 0.00 45.94 4.45
454 455 1.099689 TGATGGTCACATGCAGCATG 58.900 50.000 30.34 30.34 46.18 4.06
455 456 1.100510 GTGATGGTCACATGCAGCAT 58.899 50.000 0.52 0.52 46.22 3.79
456 457 2.558617 GTGATGGTCACATGCAGCA 58.441 52.632 0.00 0.00 46.22 4.41
465 466 2.361789 CATGCACTGATGTGATGGTCA 58.638 47.619 0.00 0.00 46.55 4.02
466 467 1.065102 GCATGCACTGATGTGATGGTC 59.935 52.381 14.21 0.00 46.55 4.02
467 468 1.100510 GCATGCACTGATGTGATGGT 58.899 50.000 14.21 0.00 46.55 3.55
468 469 1.099689 TGCATGCACTGATGTGATGG 58.900 50.000 18.46 0.00 46.55 3.51
469 470 3.314080 TGTATGCATGCACTGATGTGATG 59.686 43.478 25.37 3.18 46.55 3.07
470 471 3.314357 GTGTATGCATGCACTGATGTGAT 59.686 43.478 32.71 6.17 46.55 3.06
471 472 2.679336 GTGTATGCATGCACTGATGTGA 59.321 45.455 32.71 0.00 46.55 3.58
472 473 2.420722 TGTGTATGCATGCACTGATGTG 59.579 45.455 36.76 0.00 42.76 3.21
473 474 2.713877 TGTGTATGCATGCACTGATGT 58.286 42.857 36.76 8.68 42.76 3.06
474 475 3.128068 ACTTGTGTATGCATGCACTGATG 59.872 43.478 36.76 27.01 42.76 3.07
475 476 3.349927 ACTTGTGTATGCATGCACTGAT 58.650 40.909 36.76 23.78 42.76 2.90
476 477 2.781923 ACTTGTGTATGCATGCACTGA 58.218 42.857 36.76 26.97 42.76 3.41
477 478 3.564235 AACTTGTGTATGCATGCACTG 57.436 42.857 36.76 30.94 42.76 3.66
478 479 5.703978 TTAAACTTGTGTATGCATGCACT 57.296 34.783 36.76 24.11 42.76 4.40
479 480 6.199908 TGTTTTAAACTTGTGTATGCATGCAC 59.800 34.615 33.15 33.15 42.66 4.57
480 481 6.276091 TGTTTTAAACTTGTGTATGCATGCA 58.724 32.000 25.04 25.04 0.00 3.96
481 482 6.640499 TCTGTTTTAAACTTGTGTATGCATGC 59.360 34.615 11.82 11.82 0.00 4.06
482 483 8.572828 TTCTGTTTTAAACTTGTGTATGCATG 57.427 30.769 10.16 0.00 0.00 4.06
483 484 9.593134 TTTTCTGTTTTAAACTTGTGTATGCAT 57.407 25.926 3.79 3.79 0.00 3.96
484 485 8.988064 TTTTCTGTTTTAAACTTGTGTATGCA 57.012 26.923 9.33 0.00 0.00 3.96
489 490 8.931775 GGTCATTTTTCTGTTTTAAACTTGTGT 58.068 29.630 9.33 0.00 0.00 3.72
490 491 8.387354 GGGTCATTTTTCTGTTTTAAACTTGTG 58.613 33.333 9.33 0.00 0.00 3.33
491 492 8.318412 AGGGTCATTTTTCTGTTTTAAACTTGT 58.682 29.630 9.33 0.00 0.00 3.16
492 493 8.716646 AGGGTCATTTTTCTGTTTTAAACTTG 57.283 30.769 9.33 2.76 0.00 3.16
494 495 9.197306 ACTAGGGTCATTTTTCTGTTTTAAACT 57.803 29.630 9.33 0.00 0.00 2.66
495 496 9.244799 CACTAGGGTCATTTTTCTGTTTTAAAC 57.755 33.333 0.20 0.20 0.00 2.01
496 497 8.417884 CCACTAGGGTCATTTTTCTGTTTTAAA 58.582 33.333 0.00 0.00 0.00 1.52
497 498 7.947282 CCACTAGGGTCATTTTTCTGTTTTAA 58.053 34.615 0.00 0.00 0.00 1.52
498 499 7.519032 CCACTAGGGTCATTTTTCTGTTTTA 57.481 36.000 0.00 0.00 0.00 1.52
499 500 6.405278 CCACTAGGGTCATTTTTCTGTTTT 57.595 37.500 0.00 0.00 0.00 2.43
515 516 2.026905 GCTCTCCCTCAGACCACTAGG 61.027 61.905 0.00 0.00 42.21 3.02
516 517 1.064017 AGCTCTCCCTCAGACCACTAG 60.064 57.143 0.00 0.00 0.00 2.57
517 518 1.003646 AGCTCTCCCTCAGACCACTA 58.996 55.000 0.00 0.00 0.00 2.74
518 519 0.116143 AAGCTCTCCCTCAGACCACT 59.884 55.000 0.00 0.00 0.00 4.00
519 520 1.853963 TAAGCTCTCCCTCAGACCAC 58.146 55.000 0.00 0.00 0.00 4.16
520 521 2.856760 ATAAGCTCTCCCTCAGACCA 57.143 50.000 0.00 0.00 0.00 4.02
521 522 3.304829 AGAATAAGCTCTCCCTCAGACC 58.695 50.000 0.00 0.00 0.00 3.85
522 523 5.772672 TGATAGAATAAGCTCTCCCTCAGAC 59.227 44.000 0.00 0.00 0.00 3.51
523 524 5.772672 GTGATAGAATAAGCTCTCCCTCAGA 59.227 44.000 0.00 0.00 0.00 3.27
524 525 5.538053 TGTGATAGAATAAGCTCTCCCTCAG 59.462 44.000 0.00 0.00 0.00 3.35
525 526 5.303078 GTGTGATAGAATAAGCTCTCCCTCA 59.697 44.000 0.00 0.00 0.00 3.86
526 527 5.303078 TGTGTGATAGAATAAGCTCTCCCTC 59.697 44.000 0.00 0.00 0.00 4.30
527 528 5.211973 TGTGTGATAGAATAAGCTCTCCCT 58.788 41.667 0.00 0.00 0.00 4.20
528 529 5.537300 TGTGTGATAGAATAAGCTCTCCC 57.463 43.478 0.00 0.00 0.00 4.30
529 530 6.644592 GTGATGTGTGATAGAATAAGCTCTCC 59.355 42.308 0.00 0.00 0.00 3.71
530 531 6.644592 GGTGATGTGTGATAGAATAAGCTCTC 59.355 42.308 0.00 0.00 0.00 3.20
531 532 6.326064 AGGTGATGTGTGATAGAATAAGCTCT 59.674 38.462 0.00 0.00 0.00 4.09
532 533 6.520272 AGGTGATGTGTGATAGAATAAGCTC 58.480 40.000 0.00 0.00 0.00 4.09
533 534 6.491714 AGGTGATGTGTGATAGAATAAGCT 57.508 37.500 0.00 0.00 0.00 3.74
534 535 6.203723 GGAAGGTGATGTGTGATAGAATAAGC 59.796 42.308 0.00 0.00 0.00 3.09
535 536 7.504403 AGGAAGGTGATGTGTGATAGAATAAG 58.496 38.462 0.00 0.00 0.00 1.73
536 537 7.437713 AGGAAGGTGATGTGTGATAGAATAA 57.562 36.000 0.00 0.00 0.00 1.40
537 538 7.785028 AGTAGGAAGGTGATGTGTGATAGAATA 59.215 37.037 0.00 0.00 0.00 1.75
538 539 5.965033 AGGAAGGTGATGTGTGATAGAAT 57.035 39.130 0.00 0.00 0.00 2.40
539 540 5.958380 AGTAGGAAGGTGATGTGTGATAGAA 59.042 40.000 0.00 0.00 0.00 2.10
540 541 5.519808 AGTAGGAAGGTGATGTGTGATAGA 58.480 41.667 0.00 0.00 0.00 1.98
541 542 5.860941 AGTAGGAAGGTGATGTGTGATAG 57.139 43.478 0.00 0.00 0.00 2.08
542 543 6.620877 AAAGTAGGAAGGTGATGTGTGATA 57.379 37.500 0.00 0.00 0.00 2.15
543 544 5.505181 AAAGTAGGAAGGTGATGTGTGAT 57.495 39.130 0.00 0.00 0.00 3.06
544 545 4.974645 AAAGTAGGAAGGTGATGTGTGA 57.025 40.909 0.00 0.00 0.00 3.58
545 546 5.530915 TGAAAAAGTAGGAAGGTGATGTGTG 59.469 40.000 0.00 0.00 0.00 3.82
546 547 5.690865 TGAAAAAGTAGGAAGGTGATGTGT 58.309 37.500 0.00 0.00 0.00 3.72
575 577 4.435436 CGCGTGTGCCCTGCTCTA 62.435 66.667 0.00 0.00 38.08 2.43
590 592 1.298157 TTGTAGTGTCAGGCATGCGC 61.298 55.000 12.44 0.00 37.44 6.09
682 888 6.292328 GGTGCTGTTCTTTTTCTATTGTTTGC 60.292 38.462 0.00 0.00 0.00 3.68
703 910 1.602377 GGCGTTATATCCAAGTGGTGC 59.398 52.381 0.00 0.00 36.34 5.01
747 955 1.371635 GTTGCGACCACACCATTGC 60.372 57.895 0.00 0.00 0.00 3.56
751 959 2.899838 GCAGTTGCGACCACACCA 60.900 61.111 0.00 0.00 0.00 4.17
813 1021 2.608090 GGGTTGCGCTATTTGTACTCTC 59.392 50.000 9.73 0.00 0.00 3.20
814 1022 2.236395 AGGGTTGCGCTATTTGTACTCT 59.764 45.455 9.73 0.00 0.00 3.24
899 1113 1.202475 TGCTCAGTGTGTTGACGCTAA 60.202 47.619 0.00 0.00 41.16 3.09
900 1114 0.387565 TGCTCAGTGTGTTGACGCTA 59.612 50.000 0.00 0.00 41.16 4.26
942 1156 7.101700 CCGACTAATTAAGTTAAACCTCTGGT 58.898 38.462 0.00 0.00 39.07 4.00
982 1196 2.432146 CCATAGCTACCTTGCTCACTCA 59.568 50.000 0.00 0.00 42.97 3.41
1203 3880 0.895530 CCTCCTCGCTGGTGAAGTTA 59.104 55.000 0.00 0.00 37.07 2.24
1381 4507 2.032634 CGGCTTTGCGCTTAGGTGA 61.033 57.895 9.73 0.00 39.13 4.02
1383 4509 1.741770 CTCGGCTTTGCGCTTAGGT 60.742 57.895 9.73 0.00 39.13 3.08
1470 4656 1.805945 GGTGGCAGATGACGTCGAC 60.806 63.158 11.62 5.18 0.00 4.20
1531 4737 1.740585 CTGTCGTCGATCTGGAACTCT 59.259 52.381 0.00 0.00 0.00 3.24
1605 4811 3.244105 CGAAGGTGTCGCTGGTTG 58.756 61.111 0.00 0.00 44.14 3.77
1683 5125 0.885879 CATGTCACCAGCTTGCATGT 59.114 50.000 11.51 0.00 34.10 3.21
1798 5244 0.746063 TTGTCTTGTTTGCCTGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
1804 5250 3.230743 ACAGTTGTTGTCTTGTTTGCC 57.769 42.857 0.00 0.00 33.87 4.52
1866 5315 6.348950 GGCTTGTTTACTTTTTGTTGCCTTTT 60.349 34.615 0.00 0.00 34.42 2.27
1867 5316 5.123186 GGCTTGTTTACTTTTTGTTGCCTTT 59.877 36.000 0.00 0.00 34.42 3.11
1868 5317 4.634004 GGCTTGTTTACTTTTTGTTGCCTT 59.366 37.500 0.00 0.00 34.42 4.35
1869 5318 4.081142 AGGCTTGTTTACTTTTTGTTGCCT 60.081 37.500 0.00 0.00 41.65 4.75
1880 5329 3.370953 CCCTGCTCATAGGCTTGTTTACT 60.371 47.826 0.00 0.00 36.47 2.24
1889 5338 0.833287 TGACTTCCCTGCTCATAGGC 59.167 55.000 0.00 0.00 36.47 3.93
1897 5346 1.338020 CTTGTTTGGTGACTTCCCTGC 59.662 52.381 0.00 0.00 0.00 4.85
1907 5356 4.391216 TGATGTTGTTTTGCTTGTTTGGTG 59.609 37.500 0.00 0.00 0.00 4.17
1913 5362 3.701040 AGGTCTGATGTTGTTTTGCTTGT 59.299 39.130 0.00 0.00 0.00 3.16
1929 5378 0.445436 GCTCGTGAAATGCAGGTCTG 59.555 55.000 0.00 0.00 34.14 3.51
1931 5380 1.063174 GATGCTCGTGAAATGCAGGTC 59.937 52.381 0.00 0.00 40.18 3.85
1936 5385 2.286067 GCTGTAGATGCTCGTGAAATGC 60.286 50.000 0.00 0.00 0.00 3.56
1940 5389 0.179137 CGGCTGTAGATGCTCGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
1944 5393 1.299468 GACCGGCTGTAGATGCTCG 60.299 63.158 0.00 0.00 0.00 5.03
1945 5394 0.031449 GAGACCGGCTGTAGATGCTC 59.969 60.000 0.00 0.00 0.00 4.26
1946 5395 0.684479 TGAGACCGGCTGTAGATGCT 60.684 55.000 0.00 0.00 0.00 3.79
1947 5396 0.390860 ATGAGACCGGCTGTAGATGC 59.609 55.000 0.00 0.00 0.00 3.91
1948 5397 2.350868 CGTATGAGACCGGCTGTAGATG 60.351 54.545 0.00 0.00 0.00 2.90
1949 5398 1.880675 CGTATGAGACCGGCTGTAGAT 59.119 52.381 0.00 0.00 0.00 1.98
1950 5399 1.306148 CGTATGAGACCGGCTGTAGA 58.694 55.000 0.00 0.00 0.00 2.59
1951 5400 0.311165 CCGTATGAGACCGGCTGTAG 59.689 60.000 0.00 0.00 37.43 2.74
1952 5401 2.411535 CCGTATGAGACCGGCTGTA 58.588 57.895 0.00 0.00 37.43 2.74
1953 5402 3.207354 CCGTATGAGACCGGCTGT 58.793 61.111 0.00 0.00 37.43 4.40
1957 5406 2.417516 CTGGCCGTATGAGACCGG 59.582 66.667 0.00 0.00 46.90 5.28
1958 5407 2.417516 CCTGGCCGTATGAGACCG 59.582 66.667 0.00 0.00 0.00 4.79
1959 5408 2.109181 GCCTGGCCGTATGAGACC 59.891 66.667 7.66 0.00 0.00 3.85
1960 5409 2.279517 CGCCTGGCCGTATGAGAC 60.280 66.667 14.12 0.00 0.00 3.36
1961 5410 3.536917 CCGCCTGGCCGTATGAGA 61.537 66.667 14.12 0.00 0.00 3.27
1962 5411 3.536917 TCCGCCTGGCCGTATGAG 61.537 66.667 14.12 0.00 34.14 2.90
1963 5412 3.845259 GTCCGCCTGGCCGTATGA 61.845 66.667 14.12 0.00 34.14 2.15
1964 5413 4.910585 GGTCCGCCTGGCCGTATG 62.911 72.222 14.12 0.00 34.14 2.39
1975 5424 3.929672 GATAGTGATCAGGCGGTCCGC 62.930 61.905 28.44 28.44 40.99 5.54
1976 5425 0.039074 GATAGTGATCAGGCGGTCCG 60.039 60.000 6.99 6.99 37.47 4.79
1977 5426 0.039074 CGATAGTGATCAGGCGGTCC 60.039 60.000 0.00 0.00 31.78 4.46
1978 5427 0.039074 CCGATAGTGATCAGGCGGTC 60.039 60.000 14.07 1.88 34.45 4.79
1979 5428 1.464376 CCCGATAGTGATCAGGCGGT 61.464 60.000 18.37 0.00 37.21 5.68
1980 5429 1.290324 CCCGATAGTGATCAGGCGG 59.710 63.158 14.92 14.92 38.54 6.13
1981 5430 0.039074 GACCCGATAGTGATCAGGCG 60.039 60.000 0.00 0.00 33.39 5.52
1982 5431 1.040646 TGACCCGATAGTGATCAGGC 58.959 55.000 0.00 0.00 33.39 4.85
1983 5432 2.311463 AGTGACCCGATAGTGATCAGG 58.689 52.381 0.00 0.00 35.92 3.86
1984 5433 4.392921 AAAGTGACCCGATAGTGATCAG 57.607 45.455 0.00 0.00 31.78 2.90
1985 5434 4.819105 AAAAGTGACCCGATAGTGATCA 57.181 40.909 0.00 0.00 31.78 2.92
2004 5453 1.975680 AGAGGGCCGTCTAGACAAAAA 59.024 47.619 26.19 0.00 0.00 1.94
2005 5454 1.549170 GAGAGGGCCGTCTAGACAAAA 59.451 52.381 27.28 0.00 0.00 2.44
2006 5455 1.183549 GAGAGGGCCGTCTAGACAAA 58.816 55.000 27.28 0.00 0.00 2.83
2007 5456 0.039180 TGAGAGGGCCGTCTAGACAA 59.961 55.000 27.28 8.76 0.00 3.18
2008 5457 0.039180 TTGAGAGGGCCGTCTAGACA 59.961 55.000 27.28 18.12 0.00 3.41
2009 5458 1.135053 GTTTGAGAGGGCCGTCTAGAC 60.135 57.143 27.28 20.20 0.00 2.59
2010 5459 1.183549 GTTTGAGAGGGCCGTCTAGA 58.816 55.000 27.28 15.88 0.00 2.43
2011 5460 0.895530 TGTTTGAGAGGGCCGTCTAG 59.104 55.000 27.28 0.00 0.00 2.43
2012 5461 0.606604 GTGTTTGAGAGGGCCGTCTA 59.393 55.000 27.28 10.90 0.00 2.59
2013 5462 1.371558 GTGTTTGAGAGGGCCGTCT 59.628 57.895 27.54 27.54 0.00 4.18
2014 5463 2.027625 CGTGTTTGAGAGGGCCGTC 61.028 63.158 17.88 17.88 0.00 4.79
2015 5464 2.030562 CGTGTTTGAGAGGGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
2016 5465 0.320073 TAACGTGTTTGAGAGGGCCG 60.320 55.000 0.00 0.00 0.00 6.13
2017 5466 1.439679 CTAACGTGTTTGAGAGGGCC 58.560 55.000 0.00 0.00 0.00 5.80
2018 5467 0.796927 GCTAACGTGTTTGAGAGGGC 59.203 55.000 0.00 0.00 0.00 5.19
2019 5468 2.069273 CAGCTAACGTGTTTGAGAGGG 58.931 52.381 0.00 0.00 0.00 4.30
2020 5469 3.026630 TCAGCTAACGTGTTTGAGAGG 57.973 47.619 0.00 0.00 0.00 3.69
2021 5470 3.301906 CGATCAGCTAACGTGTTTGAGAG 59.698 47.826 0.00 0.00 0.00 3.20
2022 5471 3.242518 CGATCAGCTAACGTGTTTGAGA 58.757 45.455 0.00 0.00 0.00 3.27
2023 5472 2.345641 CCGATCAGCTAACGTGTTTGAG 59.654 50.000 0.00 0.00 0.00 3.02
2024 5473 2.288579 ACCGATCAGCTAACGTGTTTGA 60.289 45.455 0.00 0.00 0.00 2.69
2025 5474 2.066262 ACCGATCAGCTAACGTGTTTG 58.934 47.619 0.00 0.00 0.00 2.93
2026 5475 2.450609 ACCGATCAGCTAACGTGTTT 57.549 45.000 0.00 0.00 0.00 2.83
2027 5476 3.795623 ATACCGATCAGCTAACGTGTT 57.204 42.857 0.00 0.00 0.00 3.32
2028 5477 3.490419 GGAATACCGATCAGCTAACGTGT 60.490 47.826 0.00 0.00 0.00 4.49
2029 5478 3.050619 GGAATACCGATCAGCTAACGTG 58.949 50.000 0.00 0.00 0.00 4.49
2030 5479 2.957006 AGGAATACCGATCAGCTAACGT 59.043 45.455 0.00 0.00 41.83 3.99
2031 5480 3.004419 TGAGGAATACCGATCAGCTAACG 59.996 47.826 0.00 0.00 41.83 3.18
2032 5481 4.585955 TGAGGAATACCGATCAGCTAAC 57.414 45.455 0.00 0.00 41.83 2.34
2033 5482 6.096987 GGATATGAGGAATACCGATCAGCTAA 59.903 42.308 0.00 0.00 41.83 3.09
2034 5483 5.594725 GGATATGAGGAATACCGATCAGCTA 59.405 44.000 0.00 0.00 41.83 3.32
2035 5484 4.404073 GGATATGAGGAATACCGATCAGCT 59.596 45.833 0.00 0.00 41.83 4.24
2036 5485 4.160439 TGGATATGAGGAATACCGATCAGC 59.840 45.833 0.00 0.00 41.83 4.26
2037 5486 5.680922 GCTGGATATGAGGAATACCGATCAG 60.681 48.000 0.00 0.00 41.83 2.90
2038 5487 4.160439 GCTGGATATGAGGAATACCGATCA 59.840 45.833 0.00 0.00 41.83 2.92
2039 5488 4.442192 GGCTGGATATGAGGAATACCGATC 60.442 50.000 0.00 0.00 41.83 3.69
2040 5489 3.452627 GGCTGGATATGAGGAATACCGAT 59.547 47.826 0.00 0.00 41.83 4.18
2041 5490 2.832129 GGCTGGATATGAGGAATACCGA 59.168 50.000 0.00 0.00 41.83 4.69
2042 5491 2.093447 GGGCTGGATATGAGGAATACCG 60.093 54.545 0.00 0.00 41.83 4.02
2043 5492 2.912956 TGGGCTGGATATGAGGAATACC 59.087 50.000 0.00 0.00 0.00 2.73
2044 5493 4.640771 TTGGGCTGGATATGAGGAATAC 57.359 45.455 0.00 0.00 0.00 1.89
2045 5494 5.865977 ATTTGGGCTGGATATGAGGAATA 57.134 39.130 0.00 0.00 0.00 1.75
2046 5495 4.754411 ATTTGGGCTGGATATGAGGAAT 57.246 40.909 0.00 0.00 0.00 3.01
2047 5496 4.415179 TGTATTTGGGCTGGATATGAGGAA 59.585 41.667 0.00 0.00 0.00 3.36
2048 5497 3.980022 TGTATTTGGGCTGGATATGAGGA 59.020 43.478 0.00 0.00 0.00 3.71
2049 5498 4.371624 TGTATTTGGGCTGGATATGAGG 57.628 45.455 0.00 0.00 0.00 3.86
2050 5499 5.278660 GCTTTGTATTTGGGCTGGATATGAG 60.279 44.000 0.00 0.00 0.00 2.90
2051 5500 4.584325 GCTTTGTATTTGGGCTGGATATGA 59.416 41.667 0.00 0.00 0.00 2.15
2052 5501 4.557296 CGCTTTGTATTTGGGCTGGATATG 60.557 45.833 0.00 0.00 0.00 1.78
2053 5502 3.569701 CGCTTTGTATTTGGGCTGGATAT 59.430 43.478 0.00 0.00 0.00 1.63
2054 5503 2.948979 CGCTTTGTATTTGGGCTGGATA 59.051 45.455 0.00 0.00 0.00 2.59
2055 5504 1.750778 CGCTTTGTATTTGGGCTGGAT 59.249 47.619 0.00 0.00 0.00 3.41
2056 5505 1.173043 CGCTTTGTATTTGGGCTGGA 58.827 50.000 0.00 0.00 0.00 3.86
2057 5506 0.173255 CCGCTTTGTATTTGGGCTGG 59.827 55.000 0.00 0.00 0.00 4.85
2058 5507 1.173043 TCCGCTTTGTATTTGGGCTG 58.827 50.000 0.00 0.00 0.00 4.85
2059 5508 2.143876 ATCCGCTTTGTATTTGGGCT 57.856 45.000 0.00 0.00 0.00 5.19
2060 5509 4.156008 CCTATATCCGCTTTGTATTTGGGC 59.844 45.833 0.00 0.00 0.00 5.36
2061 5510 5.411669 GTCCTATATCCGCTTTGTATTTGGG 59.588 44.000 0.00 0.00 0.00 4.12
2062 5511 5.120208 CGTCCTATATCCGCTTTGTATTTGG 59.880 44.000 0.00 0.00 0.00 3.28
2063 5512 5.389516 GCGTCCTATATCCGCTTTGTATTTG 60.390 44.000 0.00 0.00 43.81 2.32
2064 5513 4.689345 GCGTCCTATATCCGCTTTGTATTT 59.311 41.667 0.00 0.00 43.81 1.40
2065 5514 4.243270 GCGTCCTATATCCGCTTTGTATT 58.757 43.478 0.00 0.00 43.81 1.89
2066 5515 3.368116 GGCGTCCTATATCCGCTTTGTAT 60.368 47.826 0.00 0.00 46.23 2.29
2067 5516 2.029649 GGCGTCCTATATCCGCTTTGTA 60.030 50.000 0.00 0.00 46.23 2.41
2068 5517 1.270147 GGCGTCCTATATCCGCTTTGT 60.270 52.381 0.00 0.00 46.23 2.83
2069 5518 1.000955 AGGCGTCCTATATCCGCTTTG 59.999 52.381 0.00 0.00 46.23 2.77
2070 5519 1.000955 CAGGCGTCCTATATCCGCTTT 59.999 52.381 0.00 0.00 46.23 3.51
2071 5520 0.603569 CAGGCGTCCTATATCCGCTT 59.396 55.000 0.00 0.00 46.23 4.68
2072 5521 1.251527 CCAGGCGTCCTATATCCGCT 61.252 60.000 0.00 0.00 46.23 5.52
2073 5522 1.215647 CCAGGCGTCCTATATCCGC 59.784 63.158 0.00 0.00 46.28 5.54
2074 5523 0.526662 GTCCAGGCGTCCTATATCCG 59.473 60.000 0.00 0.00 29.64 4.18
2075 5524 0.896226 GGTCCAGGCGTCCTATATCC 59.104 60.000 0.00 0.00 29.64 2.59
2076 5525 0.896226 GGGTCCAGGCGTCCTATATC 59.104 60.000 0.00 0.00 29.64 1.63
2077 5526 0.898789 CGGGTCCAGGCGTCCTATAT 60.899 60.000 0.00 0.00 29.64 0.86
2078 5527 1.529948 CGGGTCCAGGCGTCCTATA 60.530 63.158 0.00 0.00 29.64 1.31
2079 5528 2.838225 CGGGTCCAGGCGTCCTAT 60.838 66.667 0.00 0.00 29.64 2.57
2115 5564 6.240586 GGATAGGAAGGGATTTATGTGGGATT 60.241 42.308 0.00 0.00 0.00 3.01
2129 5578 2.340443 GCGAGCGGATAGGAAGGG 59.660 66.667 0.00 0.00 0.00 3.95
2163 5612 1.363246 GAGGGAAGGGGAGTGAAGTT 58.637 55.000 0.00 0.00 0.00 2.66
2177 5631 2.212794 GACGGAGAGGAGTGGAGGGA 62.213 65.000 0.00 0.00 0.00 4.20
2189 5643 2.025155 GATGAGCTTAGGTGACGGAGA 58.975 52.381 0.00 0.00 0.00 3.71
2195 5649 1.403814 CCGGAGATGAGCTTAGGTGA 58.596 55.000 0.00 0.00 0.00 4.02
2200 5654 0.394192 CCATGCCGGAGATGAGCTTA 59.606 55.000 5.05 0.00 36.56 3.09
2264 5789 2.746277 GCCGCGTGGGATGAGTTT 60.746 61.111 18.41 0.00 38.47 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.