Multiple sequence alignment - TraesCS6D01G209900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G209900 chr6D 100.000 3386 0 0 1 3386 296678158 296681543 0.000000e+00 6253.0
1 TraesCS6D01G209900 chr6D 98.133 3106 54 4 281 3386 464280557 464277456 0.000000e+00 5411.0
2 TraesCS6D01G209900 chr6D 86.403 2096 247 20 1296 3386 471971626 471969564 0.000000e+00 2257.0
3 TraesCS6D01G209900 chr5D 98.481 2634 38 2 754 3386 482799852 482802484 0.000000e+00 4641.0
4 TraesCS6D01G209900 chr5D 90.188 1009 92 5 282 1288 273104015 273103012 0.000000e+00 1308.0
5 TraesCS6D01G209900 chr5D 87.996 958 94 9 301 1252 523456770 523457712 0.000000e+00 1112.0
6 TraesCS6D01G209900 chr6B 93.376 3125 182 14 265 3386 276764545 276767647 0.000000e+00 4601.0
7 TraesCS6D01G209900 chr6B 83.026 271 15 8 1 240 460506180 460505910 2.050000e-52 217.0
8 TraesCS6D01G209900 chr5B 93.499 3107 179 13 284 3386 444755546 444758633 0.000000e+00 4597.0
9 TraesCS6D01G209900 chr5B 85.149 505 67 6 537 1035 521389777 521390279 8.380000e-141 510.0
10 TraesCS6D01G209900 chr4D 98.688 2363 28 3 1025 3386 486782678 486780318 0.000000e+00 4189.0
11 TraesCS6D01G209900 chr5A 96.706 2398 74 5 262 2657 669851782 669854176 0.000000e+00 3986.0
12 TraesCS6D01G209900 chr3B 95.397 2064 90 5 1286 3348 485405651 485403592 0.000000e+00 3280.0
13 TraesCS6D01G209900 chr3B 94.757 1030 52 2 261 1288 485406834 485405805 0.000000e+00 1602.0
14 TraesCS6D01G209900 chr3B 83.846 390 61 2 282 670 562560237 562559849 1.480000e-98 370.0
15 TraesCS6D01G209900 chr3B 100.000 43 0 0 3344 3386 485393588 485393546 2.800000e-11 80.5
16 TraesCS6D01G209900 chr7D 97.702 1871 38 1 1521 3386 101764726 101766596 0.000000e+00 3212.0
17 TraesCS6D01G209900 chr6A 89.308 159 13 2 86 240 423309645 423309803 2.670000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G209900 chr6D 296678158 296681543 3385 False 6253 6253 100.000 1 3386 1 chr6D.!!$F1 3385
1 TraesCS6D01G209900 chr6D 464277456 464280557 3101 True 5411 5411 98.133 281 3386 1 chr6D.!!$R1 3105
2 TraesCS6D01G209900 chr6D 471969564 471971626 2062 True 2257 2257 86.403 1296 3386 1 chr6D.!!$R2 2090
3 TraesCS6D01G209900 chr5D 482799852 482802484 2632 False 4641 4641 98.481 754 3386 1 chr5D.!!$F1 2632
4 TraesCS6D01G209900 chr5D 273103012 273104015 1003 True 1308 1308 90.188 282 1288 1 chr5D.!!$R1 1006
5 TraesCS6D01G209900 chr5D 523456770 523457712 942 False 1112 1112 87.996 301 1252 1 chr5D.!!$F2 951
6 TraesCS6D01G209900 chr6B 276764545 276767647 3102 False 4601 4601 93.376 265 3386 1 chr6B.!!$F1 3121
7 TraesCS6D01G209900 chr5B 444755546 444758633 3087 False 4597 4597 93.499 284 3386 1 chr5B.!!$F1 3102
8 TraesCS6D01G209900 chr5B 521389777 521390279 502 False 510 510 85.149 537 1035 1 chr5B.!!$F2 498
9 TraesCS6D01G209900 chr4D 486780318 486782678 2360 True 4189 4189 98.688 1025 3386 1 chr4D.!!$R1 2361
10 TraesCS6D01G209900 chr5A 669851782 669854176 2394 False 3986 3986 96.706 262 2657 1 chr5A.!!$F1 2395
11 TraesCS6D01G209900 chr3B 485403592 485406834 3242 True 2441 3280 95.077 261 3348 2 chr3B.!!$R3 3087
12 TraesCS6D01G209900 chr7D 101764726 101766596 1870 False 3212 3212 97.702 1521 3386 1 chr7D.!!$F1 1865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.033503 TCTACCTCCATCGCTCCACA 60.034 55.0 0.0 0.0 0.0 4.17 F
74 75 0.040958 GCTCCACACTTGCGTCTTTG 60.041 55.0 0.0 0.0 0.0 2.77 F
93 94 0.103208 GATCGTTCGCCTCATGTCCT 59.897 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1127 1137 2.166459 TCACGGCTGATGGTAGAAAGAG 59.834 50.000 0.0 0.0 0.00 2.85 R
1772 1939 9.177608 CAATTAAGTGATCTCTATGGGAAACAA 57.822 33.333 0.0 0.0 0.00 2.83 R
2631 2806 2.911928 TGGCCGTGTTCTGGTCAA 59.088 55.556 0.0 0.0 38.38 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.657436 ACCAATCTCTACCTTCATCGTC 57.343 45.455 0.00 0.00 0.00 4.20
22 23 3.385111 ACCAATCTCTACCTTCATCGTCC 59.615 47.826 0.00 0.00 0.00 4.79
23 24 3.551046 CCAATCTCTACCTTCATCGTCCG 60.551 52.174 0.00 0.00 0.00 4.79
24 25 2.414994 TCTCTACCTTCATCGTCCGT 57.585 50.000 0.00 0.00 0.00 4.69
25 26 2.719739 TCTCTACCTTCATCGTCCGTT 58.280 47.619 0.00 0.00 0.00 4.44
26 27 3.087031 TCTCTACCTTCATCGTCCGTTT 58.913 45.455 0.00 0.00 0.00 3.60
27 28 3.128242 TCTCTACCTTCATCGTCCGTTTC 59.872 47.826 0.00 0.00 0.00 2.78
28 29 2.159476 TCTACCTTCATCGTCCGTTTCG 60.159 50.000 0.00 0.00 0.00 3.46
29 30 0.599558 ACCTTCATCGTCCGTTTCGA 59.400 50.000 0.00 0.00 41.45 3.71
30 31 1.000060 ACCTTCATCGTCCGTTTCGAA 60.000 47.619 0.00 0.00 40.61 3.71
31 32 2.063266 CCTTCATCGTCCGTTTCGAAA 58.937 47.619 6.47 6.47 40.61 3.46
32 33 2.092211 CCTTCATCGTCCGTTTCGAAAG 59.908 50.000 11.66 5.66 40.61 2.62
33 34 2.710220 TCATCGTCCGTTTCGAAAGA 57.290 45.000 11.66 5.00 40.61 2.52
50 51 8.535690 TTCGAAAGAAGAAAATTCTCTACCTC 57.464 34.615 0.00 0.00 46.92 3.85
51 52 7.097834 TCGAAAGAAGAAAATTCTCTACCTCC 58.902 38.462 0.00 0.00 36.28 4.30
52 53 6.874134 CGAAAGAAGAAAATTCTCTACCTCCA 59.126 38.462 0.00 0.00 36.28 3.86
53 54 7.550906 CGAAAGAAGAAAATTCTCTACCTCCAT 59.449 37.037 0.00 0.00 36.28 3.41
54 55 8.800370 AAAGAAGAAAATTCTCTACCTCCATC 57.200 34.615 0.00 0.00 36.28 3.51
55 56 6.578023 AGAAGAAAATTCTCTACCTCCATCG 58.422 40.000 0.00 0.00 36.28 3.84
56 57 4.698575 AGAAAATTCTCTACCTCCATCGC 58.301 43.478 0.00 0.00 29.94 4.58
57 58 4.407296 AGAAAATTCTCTACCTCCATCGCT 59.593 41.667 0.00 0.00 29.94 4.93
58 59 4.329462 AAATTCTCTACCTCCATCGCTC 57.671 45.455 0.00 0.00 0.00 5.03
59 60 1.693627 TTCTCTACCTCCATCGCTCC 58.306 55.000 0.00 0.00 0.00 4.70
60 61 0.551396 TCTCTACCTCCATCGCTCCA 59.449 55.000 0.00 0.00 0.00 3.86
61 62 0.671251 CTCTACCTCCATCGCTCCAC 59.329 60.000 0.00 0.00 0.00 4.02
62 63 0.033503 TCTACCTCCATCGCTCCACA 60.034 55.000 0.00 0.00 0.00 4.17
63 64 0.103208 CTACCTCCATCGCTCCACAC 59.897 60.000 0.00 0.00 0.00 3.82
64 65 0.324368 TACCTCCATCGCTCCACACT 60.324 55.000 0.00 0.00 0.00 3.55
65 66 1.194781 ACCTCCATCGCTCCACACTT 61.195 55.000 0.00 0.00 0.00 3.16
66 67 0.742281 CCTCCATCGCTCCACACTTG 60.742 60.000 0.00 0.00 0.00 3.16
67 68 1.364626 CTCCATCGCTCCACACTTGC 61.365 60.000 0.00 0.00 0.00 4.01
71 72 2.356313 CGCTCCACACTTGCGTCT 60.356 61.111 0.00 0.00 44.00 4.18
72 73 1.956170 CGCTCCACACTTGCGTCTT 60.956 57.895 0.00 0.00 44.00 3.01
73 74 1.498865 CGCTCCACACTTGCGTCTTT 61.499 55.000 0.00 0.00 44.00 2.52
74 75 0.040958 GCTCCACACTTGCGTCTTTG 60.041 55.000 0.00 0.00 0.00 2.77
75 76 1.581934 CTCCACACTTGCGTCTTTGA 58.418 50.000 0.00 0.00 0.00 2.69
76 77 2.146342 CTCCACACTTGCGTCTTTGAT 58.854 47.619 0.00 0.00 0.00 2.57
77 78 2.143122 TCCACACTTGCGTCTTTGATC 58.857 47.619 0.00 0.00 0.00 2.92
78 79 1.136252 CCACACTTGCGTCTTTGATCG 60.136 52.381 0.00 0.00 0.00 3.69
79 80 1.526887 CACACTTGCGTCTTTGATCGT 59.473 47.619 0.00 0.00 0.00 3.73
80 81 2.032894 CACACTTGCGTCTTTGATCGTT 60.033 45.455 0.00 0.00 0.00 3.85
81 82 2.221055 ACACTTGCGTCTTTGATCGTTC 59.779 45.455 0.00 0.00 0.00 3.95
82 83 1.455786 ACTTGCGTCTTTGATCGTTCG 59.544 47.619 0.00 0.00 0.00 3.95
83 84 0.162933 TTGCGTCTTTGATCGTTCGC 59.837 50.000 11.50 11.50 43.14 4.70
84 85 1.058903 GCGTCTTTGATCGTTCGCC 59.941 57.895 8.56 0.00 38.16 5.54
85 86 1.352156 GCGTCTTTGATCGTTCGCCT 61.352 55.000 8.56 0.00 38.16 5.52
86 87 0.640768 CGTCTTTGATCGTTCGCCTC 59.359 55.000 0.00 0.00 0.00 4.70
87 88 1.710013 GTCTTTGATCGTTCGCCTCA 58.290 50.000 0.00 0.00 0.00 3.86
88 89 2.271800 GTCTTTGATCGTTCGCCTCAT 58.728 47.619 0.00 0.00 0.00 2.90
89 90 2.029728 GTCTTTGATCGTTCGCCTCATG 59.970 50.000 0.00 0.00 0.00 3.07
90 91 2.002586 CTTTGATCGTTCGCCTCATGT 58.997 47.619 0.00 0.00 0.00 3.21
91 92 1.640428 TTGATCGTTCGCCTCATGTC 58.360 50.000 0.00 0.00 0.00 3.06
92 93 0.179111 TGATCGTTCGCCTCATGTCC 60.179 55.000 0.00 0.00 0.00 4.02
93 94 0.103208 GATCGTTCGCCTCATGTCCT 59.897 55.000 0.00 0.00 0.00 3.85
94 95 0.537188 ATCGTTCGCCTCATGTCCTT 59.463 50.000 0.00 0.00 0.00 3.36
95 96 0.389817 TCGTTCGCCTCATGTCCTTG 60.390 55.000 0.00 0.00 0.00 3.61
96 97 0.389817 CGTTCGCCTCATGTCCTTGA 60.390 55.000 0.00 0.00 0.00 3.02
97 98 1.079503 GTTCGCCTCATGTCCTTGAC 58.920 55.000 0.00 0.00 0.00 3.18
98 99 0.389817 TTCGCCTCATGTCCTTGACG 60.390 55.000 0.00 0.00 34.95 4.35
99 100 1.811266 CGCCTCATGTCCTTGACGG 60.811 63.158 0.00 0.00 34.95 4.79
100 101 1.596934 GCCTCATGTCCTTGACGGA 59.403 57.895 0.00 0.00 40.30 4.69
116 117 4.736896 GACGTCGCCCTGGTCCAC 62.737 72.222 0.00 0.00 0.00 4.02
137 138 4.347453 GGCAAAGCACCACGCCTG 62.347 66.667 0.00 0.00 44.04 4.85
138 139 4.347453 GCAAAGCACCACGCCTGG 62.347 66.667 0.00 0.00 44.04 4.45
139 140 4.347453 CAAAGCACCACGCCTGGC 62.347 66.667 9.11 9.11 42.08 4.85
140 141 4.586235 AAAGCACCACGCCTGGCT 62.586 61.111 17.92 0.55 42.08 4.75
169 170 2.254951 CGCATGCGCTTTCCAACA 59.745 55.556 29.09 0.00 35.30 3.33
170 171 1.371512 CGCATGCGCTTTCCAACAA 60.372 52.632 29.09 0.00 35.30 2.83
171 172 1.608093 CGCATGCGCTTTCCAACAAC 61.608 55.000 29.09 0.00 35.30 3.32
172 173 1.284297 GCATGCGCTTTCCAACAACC 61.284 55.000 9.73 0.00 34.30 3.77
173 174 1.003262 CATGCGCTTTCCAACAACCG 61.003 55.000 9.73 0.00 0.00 4.44
174 175 1.169661 ATGCGCTTTCCAACAACCGA 61.170 50.000 9.73 0.00 0.00 4.69
175 176 1.169661 TGCGCTTTCCAACAACCGAT 61.170 50.000 9.73 0.00 0.00 4.18
176 177 0.454452 GCGCTTTCCAACAACCGATC 60.454 55.000 0.00 0.00 0.00 3.69
177 178 0.179225 CGCTTTCCAACAACCGATCG 60.179 55.000 8.51 8.51 0.00 3.69
178 179 0.872388 GCTTTCCAACAACCGATCGT 59.128 50.000 15.09 0.00 0.00 3.73
179 180 1.399727 GCTTTCCAACAACCGATCGTG 60.400 52.381 15.09 9.30 0.00 4.35
180 181 0.589223 TTTCCAACAACCGATCGTGC 59.411 50.000 15.09 0.00 0.00 5.34
181 182 0.533085 TTCCAACAACCGATCGTGCA 60.533 50.000 15.09 0.00 0.00 4.57
182 183 0.533085 TCCAACAACCGATCGTGCAA 60.533 50.000 15.09 0.00 0.00 4.08
183 184 0.385473 CCAACAACCGATCGTGCAAC 60.385 55.000 15.09 0.00 0.00 4.17
195 196 2.356794 GTGCAACGCGTAGTCTACC 58.643 57.895 14.46 0.00 0.00 3.18
196 197 0.109412 GTGCAACGCGTAGTCTACCT 60.109 55.000 14.46 0.00 0.00 3.08
197 198 0.109458 TGCAACGCGTAGTCTACCTG 60.109 55.000 14.46 5.40 0.00 4.00
198 199 0.169672 GCAACGCGTAGTCTACCTGA 59.830 55.000 14.46 0.00 0.00 3.86
199 200 1.202268 GCAACGCGTAGTCTACCTGAT 60.202 52.381 14.46 0.00 0.00 2.90
200 201 2.451132 CAACGCGTAGTCTACCTGATG 58.549 52.381 14.46 0.00 0.00 3.07
201 202 1.022735 ACGCGTAGTCTACCTGATGG 58.977 55.000 11.67 0.00 39.83 3.51
202 203 1.306148 CGCGTAGTCTACCTGATGGA 58.694 55.000 0.00 0.00 37.04 3.41
203 204 1.880675 CGCGTAGTCTACCTGATGGAT 59.119 52.381 0.00 0.00 37.04 3.41
204 205 2.350868 CGCGTAGTCTACCTGATGGATG 60.351 54.545 0.00 0.00 37.04 3.51
205 206 2.608261 GCGTAGTCTACCTGATGGATGC 60.608 54.545 4.39 0.00 37.04 3.91
206 207 2.623416 CGTAGTCTACCTGATGGATGCA 59.377 50.000 4.39 0.00 37.04 3.96
207 208 3.551046 CGTAGTCTACCTGATGGATGCAC 60.551 52.174 4.39 0.00 37.04 4.57
208 209 2.470990 AGTCTACCTGATGGATGCACA 58.529 47.619 0.00 0.00 37.04 4.57
209 210 3.044156 AGTCTACCTGATGGATGCACAT 58.956 45.455 0.00 0.00 37.04 3.21
210 211 4.226384 AGTCTACCTGATGGATGCACATA 58.774 43.478 0.00 0.00 37.04 2.29
211 212 4.039730 AGTCTACCTGATGGATGCACATAC 59.960 45.833 0.00 0.00 37.04 2.39
212 213 3.966665 TCTACCTGATGGATGCACATACA 59.033 43.478 0.00 0.00 35.84 2.29
213 214 3.870538 ACCTGATGGATGCACATACAT 57.129 42.857 8.09 8.09 44.74 2.29
214 215 3.483421 ACCTGATGGATGCACATACATG 58.517 45.455 13.07 2.03 42.23 3.21
215 216 3.136992 ACCTGATGGATGCACATACATGA 59.863 43.478 13.07 3.96 42.23 3.07
216 217 4.202535 ACCTGATGGATGCACATACATGAT 60.203 41.667 13.07 0.00 42.23 2.45
217 218 4.156008 CCTGATGGATGCACATACATGATG 59.844 45.833 13.07 0.00 42.23 3.07
218 219 4.975631 TGATGGATGCACATACATGATGA 58.024 39.130 13.07 0.00 42.23 2.92
219 220 4.758165 TGATGGATGCACATACATGATGAC 59.242 41.667 13.07 0.00 42.23 3.06
220 221 4.426736 TGGATGCACATACATGATGACT 57.573 40.909 0.00 0.00 39.06 3.41
221 222 4.784177 TGGATGCACATACATGATGACTT 58.216 39.130 0.00 0.00 39.06 3.01
222 223 5.195185 TGGATGCACATACATGATGACTTT 58.805 37.500 0.00 0.00 39.06 2.66
223 224 5.066764 TGGATGCACATACATGATGACTTTG 59.933 40.000 0.00 0.00 39.06 2.77
224 225 5.297527 GGATGCACATACATGATGACTTTGA 59.702 40.000 0.00 0.00 39.06 2.69
225 226 5.806366 TGCACATACATGATGACTTTGAG 57.194 39.130 0.00 0.00 39.06 3.02
226 227 5.247862 TGCACATACATGATGACTTTGAGT 58.752 37.500 0.00 0.00 39.06 3.41
227 228 5.122711 TGCACATACATGATGACTTTGAGTG 59.877 40.000 0.00 0.00 39.06 3.51
228 229 5.122869 GCACATACATGATGACTTTGAGTGT 59.877 40.000 0.00 0.00 39.06 3.55
229 230 6.348786 GCACATACATGATGACTTTGAGTGTT 60.349 38.462 0.00 0.00 39.06 3.32
230 231 7.587629 CACATACATGATGACTTTGAGTGTTT 58.412 34.615 0.00 0.00 39.06 2.83
231 232 7.747799 CACATACATGATGACTTTGAGTGTTTC 59.252 37.037 0.00 0.00 39.06 2.78
232 233 5.695851 ACATGATGACTTTGAGTGTTTCC 57.304 39.130 0.00 0.00 0.00 3.13
233 234 4.520492 ACATGATGACTTTGAGTGTTTCCC 59.480 41.667 0.00 0.00 0.00 3.97
234 235 3.486383 TGATGACTTTGAGTGTTTCCCC 58.514 45.455 0.00 0.00 0.00 4.81
235 236 2.358322 TGACTTTGAGTGTTTCCCCC 57.642 50.000 0.00 0.00 0.00 5.40
236 237 1.566703 TGACTTTGAGTGTTTCCCCCA 59.433 47.619 0.00 0.00 0.00 4.96
237 238 2.176798 TGACTTTGAGTGTTTCCCCCAT 59.823 45.455 0.00 0.00 0.00 4.00
238 239 2.820197 GACTTTGAGTGTTTCCCCCATC 59.180 50.000 0.00 0.00 0.00 3.51
239 240 2.176798 ACTTTGAGTGTTTCCCCCATCA 59.823 45.455 0.00 0.00 0.00 3.07
240 241 3.230134 CTTTGAGTGTTTCCCCCATCAA 58.770 45.455 0.00 0.00 0.00 2.57
241 242 2.286365 TGAGTGTTTCCCCCATCAAC 57.714 50.000 0.00 0.00 0.00 3.18
242 243 1.780309 TGAGTGTTTCCCCCATCAACT 59.220 47.619 0.00 0.00 0.00 3.16
243 244 2.162681 GAGTGTTTCCCCCATCAACTG 58.837 52.381 0.00 0.00 0.00 3.16
244 245 0.603065 GTGTTTCCCCCATCAACTGC 59.397 55.000 0.00 0.00 0.00 4.40
245 246 0.187117 TGTTTCCCCCATCAACTGCA 59.813 50.000 0.00 0.00 0.00 4.41
246 247 0.603065 GTTTCCCCCATCAACTGCAC 59.397 55.000 0.00 0.00 0.00 4.57
247 248 0.482446 TTTCCCCCATCAACTGCACT 59.518 50.000 0.00 0.00 0.00 4.40
248 249 1.367346 TTCCCCCATCAACTGCACTA 58.633 50.000 0.00 0.00 0.00 2.74
249 250 0.618458 TCCCCCATCAACTGCACTAC 59.382 55.000 0.00 0.00 0.00 2.73
250 251 0.327924 CCCCCATCAACTGCACTACA 59.672 55.000 0.00 0.00 0.00 2.74
389 390 3.866582 GAGGGGCCGATCCACCTG 61.867 72.222 0.07 0.00 39.90 4.00
560 561 2.903135 GGTGAGATCCCCTCTATTCCTG 59.097 54.545 0.00 0.00 42.44 3.86
623 624 1.517210 GGTTTCCGCGGTTTTGGCTA 61.517 55.000 27.15 0.00 0.00 3.93
752 753 2.260481 GAGTAGCCTTTCTTTCGTCCG 58.740 52.381 0.00 0.00 0.00 4.79
1772 1939 4.840115 AGAACAAATTGGGGATGTGATTGT 59.160 37.500 0.00 0.00 0.00 2.71
2384 2558 2.752807 GGGGGCGGCTCTTCCATTA 61.753 63.158 9.45 0.00 34.01 1.90
2631 2806 4.586235 AGTTGCGGCAAGGCTGGT 62.586 61.111 16.97 0.00 35.15 4.00
2905 3080 3.738282 CGAGTGTTTCCTCAAAGAGAGTG 59.262 47.826 0.00 0.00 43.12 3.51
2909 3084 4.034510 GTGTTTCCTCAAAGAGAGTGTGTG 59.965 45.833 0.00 0.00 43.12 3.82
2953 3128 4.919510 AGGGATGTGGATGGGATTATTACA 59.080 41.667 0.00 0.00 0.00 2.41
3101 3276 4.973168 AGAGCAATTAGTTGGAACTGTCA 58.027 39.130 2.14 0.00 40.07 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.385111 GGACGATGAAGGTAGAGATTGGT 59.615 47.826 0.00 0.00 0.00 3.67
1 2 3.551046 CGGACGATGAAGGTAGAGATTGG 60.551 52.174 0.00 0.00 0.00 3.16
2 3 3.066900 ACGGACGATGAAGGTAGAGATTG 59.933 47.826 0.00 0.00 0.00 2.67
3 4 3.288964 ACGGACGATGAAGGTAGAGATT 58.711 45.455 0.00 0.00 0.00 2.40
5 6 2.414994 ACGGACGATGAAGGTAGAGA 57.585 50.000 0.00 0.00 0.00 3.10
6 7 3.436496 GAAACGGACGATGAAGGTAGAG 58.564 50.000 0.00 0.00 0.00 2.43
7 8 2.159476 CGAAACGGACGATGAAGGTAGA 60.159 50.000 0.00 0.00 0.00 2.59
8 9 2.159476 TCGAAACGGACGATGAAGGTAG 60.159 50.000 0.00 0.00 34.85 3.18
9 10 1.811965 TCGAAACGGACGATGAAGGTA 59.188 47.619 0.00 0.00 34.85 3.08
10 11 0.599558 TCGAAACGGACGATGAAGGT 59.400 50.000 0.00 0.00 34.85 3.50
11 12 1.705256 TTCGAAACGGACGATGAAGG 58.295 50.000 0.00 0.00 39.45 3.46
12 13 2.984471 TCTTTCGAAACGGACGATGAAG 59.016 45.455 6.47 0.00 39.45 3.02
13 14 3.015934 TCTTTCGAAACGGACGATGAA 57.984 42.857 6.47 0.00 39.45 2.57
14 15 2.710220 TCTTTCGAAACGGACGATGA 57.290 45.000 6.47 0.00 39.45 2.92
15 16 2.984471 TCTTCTTTCGAAACGGACGATG 59.016 45.455 6.47 5.24 39.45 3.84
16 17 3.293311 TCTTCTTTCGAAACGGACGAT 57.707 42.857 6.47 0.00 39.45 3.73
17 18 2.780065 TCTTCTTTCGAAACGGACGA 57.220 45.000 6.47 4.48 37.99 4.20
18 19 3.847037 TTTCTTCTTTCGAAACGGACG 57.153 42.857 6.47 2.04 0.00 4.79
19 20 6.427974 AGAATTTTCTTCTTTCGAAACGGAC 58.572 36.000 6.47 0.00 32.55 4.79
20 21 6.482308 AGAGAATTTTCTTCTTTCGAAACGGA 59.518 34.615 6.47 0.69 37.73 4.69
21 22 6.659776 AGAGAATTTTCTTCTTTCGAAACGG 58.340 36.000 6.47 0.00 37.73 4.44
22 23 7.740781 GGTAGAGAATTTTCTTCTTTCGAAACG 59.259 37.037 6.47 3.86 37.73 3.60
23 24 8.775527 AGGTAGAGAATTTTCTTCTTTCGAAAC 58.224 33.333 6.47 0.00 37.73 2.78
24 25 8.904099 AGGTAGAGAATTTTCTTCTTTCGAAA 57.096 30.769 10.71 10.71 37.73 3.46
25 26 7.603024 GGAGGTAGAGAATTTTCTTCTTTCGAA 59.397 37.037 3.52 0.00 37.73 3.71
26 27 7.097834 GGAGGTAGAGAATTTTCTTCTTTCGA 58.902 38.462 3.52 0.00 37.73 3.71
27 28 6.874134 TGGAGGTAGAGAATTTTCTTCTTTCG 59.126 38.462 3.52 0.00 37.73 3.46
28 29 8.800370 ATGGAGGTAGAGAATTTTCTTCTTTC 57.200 34.615 3.52 0.00 37.73 2.62
29 30 7.550906 CGATGGAGGTAGAGAATTTTCTTCTTT 59.449 37.037 3.52 0.00 37.73 2.52
30 31 7.044798 CGATGGAGGTAGAGAATTTTCTTCTT 58.955 38.462 3.52 0.00 37.73 2.52
31 32 6.578023 CGATGGAGGTAGAGAATTTTCTTCT 58.422 40.000 3.52 2.96 37.73 2.85
32 33 5.235401 GCGATGGAGGTAGAGAATTTTCTTC 59.765 44.000 3.52 0.00 37.73 2.87
33 34 5.104735 AGCGATGGAGGTAGAGAATTTTCTT 60.105 40.000 3.52 0.00 37.73 2.52
34 35 4.407296 AGCGATGGAGGTAGAGAATTTTCT 59.593 41.667 3.71 3.71 41.00 2.52
35 36 4.698575 AGCGATGGAGGTAGAGAATTTTC 58.301 43.478 0.00 0.00 0.00 2.29
36 37 4.443598 GGAGCGATGGAGGTAGAGAATTTT 60.444 45.833 0.00 0.00 0.00 1.82
37 38 3.070302 GGAGCGATGGAGGTAGAGAATTT 59.930 47.826 0.00 0.00 0.00 1.82
38 39 2.630580 GGAGCGATGGAGGTAGAGAATT 59.369 50.000 0.00 0.00 0.00 2.17
39 40 2.243810 GGAGCGATGGAGGTAGAGAAT 58.756 52.381 0.00 0.00 0.00 2.40
40 41 1.063942 TGGAGCGATGGAGGTAGAGAA 60.064 52.381 0.00 0.00 0.00 2.87
41 42 0.551396 TGGAGCGATGGAGGTAGAGA 59.449 55.000 0.00 0.00 0.00 3.10
42 43 0.671251 GTGGAGCGATGGAGGTAGAG 59.329 60.000 0.00 0.00 0.00 2.43
43 44 0.033503 TGTGGAGCGATGGAGGTAGA 60.034 55.000 0.00 0.00 0.00 2.59
44 45 0.103208 GTGTGGAGCGATGGAGGTAG 59.897 60.000 0.00 0.00 0.00 3.18
45 46 0.324368 AGTGTGGAGCGATGGAGGTA 60.324 55.000 0.00 0.00 0.00 3.08
46 47 1.194781 AAGTGTGGAGCGATGGAGGT 61.195 55.000 0.00 0.00 0.00 3.85
47 48 0.742281 CAAGTGTGGAGCGATGGAGG 60.742 60.000 0.00 0.00 0.00 4.30
48 49 1.364626 GCAAGTGTGGAGCGATGGAG 61.365 60.000 0.00 0.00 0.00 3.86
49 50 1.375908 GCAAGTGTGGAGCGATGGA 60.376 57.895 0.00 0.00 0.00 3.41
50 51 3.181367 GCAAGTGTGGAGCGATGG 58.819 61.111 0.00 0.00 0.00 3.51
63 64 1.783416 GCGAACGATCAAAGACGCAAG 60.783 52.381 0.00 0.00 44.29 4.01
64 65 0.162933 GCGAACGATCAAAGACGCAA 59.837 50.000 0.00 0.00 44.29 4.85
65 66 1.623081 GGCGAACGATCAAAGACGCA 61.623 55.000 16.70 0.00 46.17 5.24
66 67 1.058903 GGCGAACGATCAAAGACGC 59.941 57.895 0.00 0.00 44.18 5.19
67 68 0.640768 GAGGCGAACGATCAAAGACG 59.359 55.000 0.00 0.00 0.00 4.18
68 69 1.710013 TGAGGCGAACGATCAAAGAC 58.290 50.000 0.00 0.00 0.00 3.01
69 70 2.270923 CATGAGGCGAACGATCAAAGA 58.729 47.619 0.00 0.00 0.00 2.52
70 71 2.002586 ACATGAGGCGAACGATCAAAG 58.997 47.619 0.00 2.34 0.00 2.77
71 72 1.999735 GACATGAGGCGAACGATCAAA 59.000 47.619 0.00 0.00 0.00 2.69
72 73 1.640428 GACATGAGGCGAACGATCAA 58.360 50.000 0.00 0.00 0.00 2.57
73 74 0.179111 GGACATGAGGCGAACGATCA 60.179 55.000 0.00 1.95 0.00 2.92
74 75 0.103208 AGGACATGAGGCGAACGATC 59.897 55.000 0.00 0.00 0.00 3.69
75 76 0.537188 AAGGACATGAGGCGAACGAT 59.463 50.000 0.00 0.00 0.00 3.73
76 77 0.389817 CAAGGACATGAGGCGAACGA 60.390 55.000 0.00 0.00 0.00 3.85
77 78 0.389817 TCAAGGACATGAGGCGAACG 60.390 55.000 0.00 0.00 0.00 3.95
78 79 1.079503 GTCAAGGACATGAGGCGAAC 58.920 55.000 0.00 0.00 32.09 3.95
79 80 0.389817 CGTCAAGGACATGAGGCGAA 60.390 55.000 0.00 0.00 32.09 4.70
80 81 1.215382 CGTCAAGGACATGAGGCGA 59.785 57.895 0.00 0.00 32.09 5.54
81 82 1.811266 CCGTCAAGGACATGAGGCG 60.811 63.158 0.00 0.00 45.00 5.52
82 83 1.596934 TCCGTCAAGGACATGAGGC 59.403 57.895 0.00 0.00 45.98 4.70
92 93 4.052229 AGGGCGACGTCCGTCAAG 62.052 66.667 13.79 5.64 46.37 3.02
93 94 4.351938 CAGGGCGACGTCCGTCAA 62.352 66.667 13.79 0.00 46.37 3.18
99 100 4.736896 GTGGACCAGGGCGACGTC 62.737 72.222 5.18 5.18 0.00 4.34
121 122 4.347453 CCAGGCGTGGTGCTTTGC 62.347 66.667 17.47 0.00 45.43 3.68
122 123 4.347453 GCCAGGCGTGGTGCTTTG 62.347 66.667 25.40 0.00 46.96 2.77
123 124 4.586235 AGCCAGGCGTGGTGCTTT 62.586 61.111 25.40 5.21 46.96 3.51
153 154 1.284297 GGTTGTTGGAAAGCGCATGC 61.284 55.000 11.47 7.91 43.24 4.06
154 155 1.003262 CGGTTGTTGGAAAGCGCATG 61.003 55.000 11.47 0.00 43.12 4.06
155 156 1.285641 CGGTTGTTGGAAAGCGCAT 59.714 52.632 11.47 0.00 43.12 4.73
156 157 2.718731 CGGTTGTTGGAAAGCGCA 59.281 55.556 11.47 0.00 43.12 6.09
159 160 0.872388 ACGATCGGTTGTTGGAAAGC 59.128 50.000 20.98 0.00 0.00 3.51
160 161 1.399727 GCACGATCGGTTGTTGGAAAG 60.400 52.381 20.98 0.00 0.00 2.62
161 162 0.589223 GCACGATCGGTTGTTGGAAA 59.411 50.000 20.98 0.00 0.00 3.13
162 163 0.533085 TGCACGATCGGTTGTTGGAA 60.533 50.000 20.98 0.00 0.00 3.53
163 164 0.533085 TTGCACGATCGGTTGTTGGA 60.533 50.000 20.98 6.41 0.00 3.53
164 165 0.385473 GTTGCACGATCGGTTGTTGG 60.385 55.000 20.98 0.86 0.00 3.77
165 166 0.721155 CGTTGCACGATCGGTTGTTG 60.721 55.000 20.98 9.20 46.05 3.33
166 167 1.567537 CGTTGCACGATCGGTTGTT 59.432 52.632 20.98 0.00 46.05 2.83
167 168 2.950172 GCGTTGCACGATCGGTTGT 61.950 57.895 20.98 0.00 46.05 3.32
168 169 2.202171 GCGTTGCACGATCGGTTG 60.202 61.111 20.98 10.76 46.05 3.77
169 170 3.773630 CGCGTTGCACGATCGGTT 61.774 61.111 20.98 0.00 46.05 4.44
170 171 3.613952 TACGCGTTGCACGATCGGT 62.614 57.895 20.78 7.32 46.05 4.69
171 172 2.845739 CTACGCGTTGCACGATCGG 61.846 63.158 20.78 9.59 46.05 4.18
172 173 2.051579 GACTACGCGTTGCACGATCG 62.052 60.000 20.78 14.88 46.05 3.69
173 174 0.797249 AGACTACGCGTTGCACGATC 60.797 55.000 20.78 8.69 46.05 3.69
174 175 0.448990 TAGACTACGCGTTGCACGAT 59.551 50.000 20.78 0.00 46.05 3.73
175 176 0.453282 GTAGACTACGCGTTGCACGA 60.453 55.000 20.78 7.13 46.05 4.35
176 177 1.400990 GGTAGACTACGCGTTGCACG 61.401 60.000 20.78 3.74 45.88 5.34
177 178 0.109412 AGGTAGACTACGCGTTGCAC 60.109 55.000 20.78 14.14 0.00 4.57
178 179 0.109458 CAGGTAGACTACGCGTTGCA 60.109 55.000 20.78 0.00 0.00 4.08
179 180 0.169672 TCAGGTAGACTACGCGTTGC 59.830 55.000 20.78 12.01 0.00 4.17
180 181 2.451132 CATCAGGTAGACTACGCGTTG 58.549 52.381 20.78 19.75 0.00 4.10
181 182 1.404391 CCATCAGGTAGACTACGCGTT 59.596 52.381 20.78 0.00 0.00 4.84
182 183 1.022735 CCATCAGGTAGACTACGCGT 58.977 55.000 19.17 19.17 0.00 6.01
183 184 1.306148 TCCATCAGGTAGACTACGCG 58.694 55.000 3.53 3.53 35.89 6.01
184 185 2.608261 GCATCCATCAGGTAGACTACGC 60.608 54.545 6.54 0.40 35.89 4.42
185 186 2.623416 TGCATCCATCAGGTAGACTACG 59.377 50.000 6.54 0.00 35.89 3.51
186 187 3.384789 TGTGCATCCATCAGGTAGACTAC 59.615 47.826 3.86 3.86 35.89 2.73
187 188 3.642141 TGTGCATCCATCAGGTAGACTA 58.358 45.455 0.00 0.00 35.89 2.59
188 189 2.470990 TGTGCATCCATCAGGTAGACT 58.529 47.619 0.00 0.00 35.89 3.24
189 190 2.988010 TGTGCATCCATCAGGTAGAC 57.012 50.000 0.00 0.00 35.89 2.59
190 191 3.966665 TGTATGTGCATCCATCAGGTAGA 59.033 43.478 0.00 0.00 35.89 2.59
191 192 4.341366 TGTATGTGCATCCATCAGGTAG 57.659 45.455 0.00 0.00 35.89 3.18
192 193 4.347583 TCATGTATGTGCATCCATCAGGTA 59.652 41.667 0.00 0.00 35.89 3.08
193 194 3.136992 TCATGTATGTGCATCCATCAGGT 59.863 43.478 0.00 0.00 35.89 4.00
194 195 3.746940 TCATGTATGTGCATCCATCAGG 58.253 45.455 0.00 0.00 0.00 3.86
195 196 5.001232 TCATCATGTATGTGCATCCATCAG 58.999 41.667 0.00 0.00 36.89 2.90
196 197 4.758165 GTCATCATGTATGTGCATCCATCA 59.242 41.667 0.00 0.00 36.89 3.07
197 198 5.001874 AGTCATCATGTATGTGCATCCATC 58.998 41.667 0.00 0.00 36.89 3.51
198 199 4.981812 AGTCATCATGTATGTGCATCCAT 58.018 39.130 0.00 0.00 36.89 3.41
199 200 4.426736 AGTCATCATGTATGTGCATCCA 57.573 40.909 0.00 0.00 36.89 3.41
200 201 5.297527 TCAAAGTCATCATGTATGTGCATCC 59.702 40.000 0.00 0.00 36.89 3.51
201 202 6.037940 ACTCAAAGTCATCATGTATGTGCATC 59.962 38.462 0.00 0.00 36.89 3.91
202 203 5.884232 ACTCAAAGTCATCATGTATGTGCAT 59.116 36.000 0.00 0.00 36.89 3.96
203 204 5.122711 CACTCAAAGTCATCATGTATGTGCA 59.877 40.000 0.00 0.00 36.89 4.57
204 205 5.122869 ACACTCAAAGTCATCATGTATGTGC 59.877 40.000 0.00 0.00 36.89 4.57
205 206 6.732531 ACACTCAAAGTCATCATGTATGTG 57.267 37.500 0.00 0.00 36.89 3.21
206 207 7.094634 GGAAACACTCAAAGTCATCATGTATGT 60.095 37.037 0.00 0.00 36.89 2.29
207 208 7.246311 GGAAACACTCAAAGTCATCATGTATG 58.754 38.462 0.00 0.00 36.88 2.39
208 209 6.375455 GGGAAACACTCAAAGTCATCATGTAT 59.625 38.462 0.00 0.00 0.00 2.29
209 210 5.705441 GGGAAACACTCAAAGTCATCATGTA 59.295 40.000 0.00 0.00 0.00 2.29
210 211 4.520492 GGGAAACACTCAAAGTCATCATGT 59.480 41.667 0.00 0.00 0.00 3.21
211 212 4.082571 GGGGAAACACTCAAAGTCATCATG 60.083 45.833 0.00 0.00 0.00 3.07
212 213 4.082125 GGGGAAACACTCAAAGTCATCAT 58.918 43.478 0.00 0.00 0.00 2.45
213 214 3.486383 GGGGAAACACTCAAAGTCATCA 58.514 45.455 0.00 0.00 0.00 3.07
214 215 2.820197 GGGGGAAACACTCAAAGTCATC 59.180 50.000 0.00 0.00 0.00 2.92
215 216 2.176798 TGGGGGAAACACTCAAAGTCAT 59.823 45.455 0.00 0.00 0.00 3.06
216 217 1.566703 TGGGGGAAACACTCAAAGTCA 59.433 47.619 0.00 0.00 0.00 3.41
217 218 2.358322 TGGGGGAAACACTCAAAGTC 57.642 50.000 0.00 0.00 0.00 3.01
218 219 2.176798 TGATGGGGGAAACACTCAAAGT 59.823 45.455 0.00 0.00 0.00 2.66
219 220 2.875296 TGATGGGGGAAACACTCAAAG 58.125 47.619 0.00 0.00 0.00 2.77
220 221 2.962421 GTTGATGGGGGAAACACTCAAA 59.038 45.455 0.00 0.00 0.00 2.69
221 222 2.176798 AGTTGATGGGGGAAACACTCAA 59.823 45.455 0.00 0.00 0.00 3.02
222 223 1.780309 AGTTGATGGGGGAAACACTCA 59.220 47.619 0.00 0.00 0.00 3.41
223 224 2.162681 CAGTTGATGGGGGAAACACTC 58.837 52.381 0.00 0.00 0.00 3.51
224 225 1.823250 GCAGTTGATGGGGGAAACACT 60.823 52.381 0.00 0.00 0.00 3.55
225 226 0.603065 GCAGTTGATGGGGGAAACAC 59.397 55.000 0.00 0.00 0.00 3.32
226 227 0.187117 TGCAGTTGATGGGGGAAACA 59.813 50.000 0.00 0.00 0.00 2.83
227 228 0.603065 GTGCAGTTGATGGGGGAAAC 59.397 55.000 0.00 0.00 0.00 2.78
228 229 0.482446 AGTGCAGTTGATGGGGGAAA 59.518 50.000 0.00 0.00 0.00 3.13
229 230 1.004277 GTAGTGCAGTTGATGGGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
230 231 0.618458 GTAGTGCAGTTGATGGGGGA 59.382 55.000 0.00 0.00 0.00 4.81
231 232 0.327924 TGTAGTGCAGTTGATGGGGG 59.672 55.000 0.00 0.00 0.00 5.40
232 233 1.742761 CTGTAGTGCAGTTGATGGGG 58.257 55.000 0.00 0.00 40.27 4.96
242 243 2.434336 AGTCCTTGTTCACTGTAGTGCA 59.566 45.455 7.14 0.00 45.25 4.57
243 244 3.113260 AGTCCTTGTTCACTGTAGTGC 57.887 47.619 7.14 0.00 45.25 4.40
244 245 6.436843 AAAAAGTCCTTGTTCACTGTAGTG 57.563 37.500 5.67 5.67 46.91 2.74
245 246 7.107542 TGTAAAAAGTCCTTGTTCACTGTAGT 58.892 34.615 0.00 0.00 0.00 2.73
246 247 7.548196 TGTAAAAAGTCCTTGTTCACTGTAG 57.452 36.000 0.00 0.00 0.00 2.74
247 248 7.925043 TTGTAAAAAGTCCTTGTTCACTGTA 57.075 32.000 0.00 0.00 0.00 2.74
248 249 6.827586 TTGTAAAAAGTCCTTGTTCACTGT 57.172 33.333 0.00 0.00 0.00 3.55
249 250 8.026607 TCTTTTGTAAAAAGTCCTTGTTCACTG 58.973 33.333 11.18 0.00 0.00 3.66
250 251 8.027189 GTCTTTTGTAAAAAGTCCTTGTTCACT 58.973 33.333 11.18 0.00 0.00 3.41
251 252 7.274904 GGTCTTTTGTAAAAAGTCCTTGTTCAC 59.725 37.037 16.51 4.85 34.23 3.18
252 253 7.317390 GGTCTTTTGTAAAAAGTCCTTGTTCA 58.683 34.615 16.51 0.00 34.23 3.18
253 254 6.755141 GGGTCTTTTGTAAAAAGTCCTTGTTC 59.245 38.462 20.46 7.16 36.27 3.18
254 255 6.351541 GGGGTCTTTTGTAAAAAGTCCTTGTT 60.352 38.462 20.46 0.00 36.27 2.83
255 256 5.128171 GGGGTCTTTTGTAAAAAGTCCTTGT 59.872 40.000 20.46 0.00 36.27 3.16
256 257 5.452776 GGGGGTCTTTTGTAAAAAGTCCTTG 60.453 44.000 20.46 0.00 36.27 3.61
257 258 4.652421 GGGGGTCTTTTGTAAAAAGTCCTT 59.348 41.667 20.46 0.00 36.27 3.36
258 259 4.220724 GGGGGTCTTTTGTAAAAAGTCCT 58.779 43.478 20.46 0.00 36.27 3.85
259 260 4.595762 GGGGGTCTTTTGTAAAAAGTCC 57.404 45.455 15.86 15.86 35.60 3.85
389 390 3.866582 CCCGATGAGGCCCACTCC 61.867 72.222 0.00 0.00 46.01 3.85
560 561 2.276853 GGATCGATCCTCCCCCGAC 61.277 68.421 32.91 6.95 43.73 4.79
623 624 2.554032 CACAAATTCCGGAAACAGAGCT 59.446 45.455 23.08 0.00 0.00 4.09
789 795 9.255304 GAATCACAAGTGGAGATTACTCTATTC 57.745 37.037 0.00 0.00 42.28 1.75
1127 1137 2.166459 TCACGGCTGATGGTAGAAAGAG 59.834 50.000 0.00 0.00 0.00 2.85
1772 1939 9.177608 CAATTAAGTGATCTCTATGGGAAACAA 57.822 33.333 0.00 0.00 0.00 2.83
2631 2806 2.911928 TGGCCGTGTTCTGGTCAA 59.088 55.556 0.00 0.00 38.38 3.18
2769 2944 7.499563 GGTTACTCCTCTTTTTCCCTATGATTC 59.500 40.741 0.00 0.00 0.00 2.52
2905 3080 3.805207 AGTTTCAACTCTACCCACACAC 58.195 45.455 0.00 0.00 32.86 3.82
2909 3084 4.081586 CCTCCTAGTTTCAACTCTACCCAC 60.082 50.000 0.00 0.00 40.37 4.61
2953 3128 6.187727 TCCTCTTTTTCCTTCACTACATGT 57.812 37.500 2.69 2.69 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.