AutoCloner

Multiple sequence alignment - TraesCS6D01G208700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G208700	chr6D	100.000	2348	0	0	1	2348	294623473	294625820	0.000000e+00	4337.0
1	TraesCS6D01G208700	chr6D	96.343	793	27	1	708	1498	294963868	294964660	0.000000e+00	1303.0
2	TraesCS6D01G208700	chr6D	91.595	809	67	1	1540	2348	294969424	294970231	0.000000e+00	1116.0
3	TraesCS6D01G208700	chr6D	86.448	487	56	8	1812	2294	295048071	295048551	2.070000e-145	525.0
4	TraesCS6D01G208700	chr6D	78.662	314	52	8	1052	1365	295068563	295068861	6.620000e-46	195.0
5	TraesCS6D01G208700	chr6D	85.987	157	12	6	689	838	295044647	295044800	2.420000e-35	159.0
6	TraesCS6D01G208700	chr6D	87.000	100	6	3	843	939	295045065	295045160	3.190000e-19	106.0
7	TraesCS6D01G208700	chr6A	90.962	686	61	1	1540	2225	426254520	426253836	0.000000e+00	922.0
8	TraesCS6D01G208700	chr6A	89.641	502	28	9	1045	1530	426215545	426215052	3.320000e-173	617.0
9	TraesCS6D01G208700	chr6A	87.778	270	23	5	689	951	426215853	426215587	8.150000e-80	307.0
10	TraesCS6D01G208700	chr6A	95.238	126	6	0	2223	2348	426229646	426229521	1.420000e-47	200.0
11	TraesCS6D01G208700	chr3D	88.600	693	74	5	1	692	508450872	508451560	0.000000e+00	837.0
12	TraesCS6D01G208700	chr6B	87.874	701	62	13	1045	1735	459148272	459148959	0.000000e+00	802.0
13	TraesCS6D01G208700	chr6B	85.166	391	52	3	300	689	427192151	427191766	1.690000e-106	396.0
14	TraesCS6D01G208700	chr6B	86.415	265	19	9	689	939	459147957	459148218	8.270000e-70	274.0
15	TraesCS6D01G208700	chr6B	82.470	251	35	7	444	689	709519497	709519743	6.570000e-51	211.0
16	TraesCS6D01G208700	chr6B	79.681	251	39	6	1102	1352	459374138	459374376	1.120000e-38	171.0
17	TraesCS6D01G208700	chr1D	89.655	435	45	0	80	514	220054335	220053901	2.640000e-154	555.0
18	TraesCS6D01G208700	chr1D	92.784	194	8	4	497	689	403527139	403527327	2.300000e-70	276.0
19	TraesCS6D01G208700	chr1D	96.154	52	2	0	1	52	220054389	220054338	4.160000e-13	86.1
20	TraesCS6D01G208700	chr3B	80.764	707	125	9	1	702	493858535	493857835	2.050000e-150	542.0
21	TraesCS6D01G208700	chr2A	83.691	233	32	6	459	689	66764249	66764021	5.080000e-52	215.0
22	TraesCS6D01G208700	chr5A	91.045	67	4	2	624	689	391987218	391987153	3.210000e-14	89.8
23	TraesCS6D01G208700	chr2D	88.710	62	2	5	621	680	461649277	461649335	1.160000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G208700	chr6D	294623473	294625820	2347	False	4337.000000	4337	100.000000	1	2348	1	chr6D.!!$F1	2347
1	TraesCS6D01G208700	chr6D	294963868	294964660	792	False	1303.000000	1303	96.343000	708	1498	1	chr6D.!!$F2	790
2	TraesCS6D01G208700	chr6D	294969424	294970231	807	False	1116.000000	1116	91.595000	1540	2348	1	chr6D.!!$F3	808
3	TraesCS6D01G208700	chr6D	295044647	295048551	3904	False	263.333333	525	86.478333	689	2294	3	chr6D.!!$F5	1605
4	TraesCS6D01G208700	chr6A	426253836	426254520	684	True	922.000000	922	90.962000	1540	2225	1	chr6A.!!$R2	685
5	TraesCS6D01G208700	chr6A	426215052	426215853	801	True	462.000000	617	88.709500	689	1530	2	chr6A.!!$R3	841
6	TraesCS6D01G208700	chr3D	508450872	508451560	688	False	837.000000	837	88.600000	1	692	1	chr3D.!!$F1	691
7	TraesCS6D01G208700	chr6B	459147957	459148959	1002	False	538.000000	802	87.144500	689	1735	2	chr6B.!!$F3	1046
8	TraesCS6D01G208700	chr3B	493857835	493858535	700	True	542.000000	542	80.764000	1	702	1	chr3B.!!$R1	701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
181	182	0.533491	GCCATGGCTTGCAAGATCAA	59.467	50.0	30.39	11.55	38.26	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1755	3700	0.032615	AAGACCCACAAACTGGCCAA	60.033	50.0	7.01	0.0	39.01	4.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	2.926778	ATGATAGACTCTGCCAAGGC	57.073	50.000	3.61	3.61	42.35	4.35
52	53	2.116983	GACTCTGCCAAGGCCTGACA	62.117	60.000	5.69	3.91	41.09	3.58
53	54	1.673665	CTCTGCCAAGGCCTGACAC	60.674	63.158	5.69	0.00	41.09	3.67
123	124	4.883585	GCTCAAGATATTCACATGGTTGGA	59.116	41.667	0.00	0.00	0.00	3.53
152	153	2.430694	CACAGGATATGGACTTCGGACA	59.569	50.000	0.00	0.00	0.00	4.02
160	161	1.251527	GGACTTCGGACAGGAGAGCA	61.252	60.000	0.00	0.00	0.00	4.26
181	182	0.533491	GCCATGGCTTGCAAGATCAA	59.467	50.000	30.39	11.55	38.26	2.57
188	189	1.089920	CTTGCAAGATCAACCCTCGG	58.910	55.000	22.31	0.00	0.00	4.63
206	207	1.109323	GGCTTGTTTCACCTGCCTGT	61.109	55.000	0.00	0.00	40.36	4.00
247	248	3.240069	GCACATTCTTGCTCATTGTGTC	58.760	45.455	0.00	0.00	39.79	3.67
253	254	3.941573	TCTTGCTCATTGTGTCTATGCA	58.058	40.909	0.00	0.00	0.00	3.96
301	302	4.718961	ACAAGCTTCAGTTACCAATCACT	58.281	39.130	0.00	0.00	0.00	3.41
313	314	2.169832	CAATCACTGGACCAACGACT	57.830	50.000	0.00	0.00	0.00	4.18
340	341	3.535561	CACTATTGTGGAGTGGTGGATC	58.464	50.000	0.00	0.00	40.58	3.36
342	343	1.673767	ATTGTGGAGTGGTGGATCCT	58.326	50.000	14.23	0.00	36.50	3.24
382	383	3.074687	AGGGGAAGGAGAAAAGAGGTTTC	59.925	47.826	0.00	0.00	45.23	2.78
406	407	1.153188	CCTGGTCATATGCACGGCA	60.153	57.895	0.00	1.01	44.86	5.69
472	473	0.596341	AACAACAAATGCCGGCGAAC	60.596	50.000	23.90	0.00	0.00	3.95
483	484	2.263540	GGCGAACGACCTTGCCTA	59.736	61.111	0.00	0.00	44.16	3.93
487	488	1.278238	CGAACGACCTTGCCTATGTC	58.722	55.000	0.00	0.00	0.00	3.06
499	500	5.248020	CCTTGCCTATGTCATCTTAGAGGAT	59.752	44.000	0.00	0.00	0.00	3.24
535	536	2.253154	GCGGTTAACGGTGTTGGC	59.747	61.111	13.90	0.00	44.51	4.52
542	543	2.181954	TAACGGTGTTGGCGGTTTAT	57.818	45.000	0.00	0.00	34.51	1.40
568	569	5.107065	ACGTTTTGTGAGACATTAGCTTAGC	60.107	40.000	0.00	0.00	0.00	3.09
571	572	7.148639	CGTTTTGTGAGACATTAGCTTAGCTTA	60.149	37.037	13.44	3.00	40.44	3.09
572	573	7.834068	TTTGTGAGACATTAGCTTAGCTTAG	57.166	36.000	13.44	5.37	40.44	2.18
573	574	5.352284	TGTGAGACATTAGCTTAGCTTAGC	58.648	41.667	16.83	16.83	40.44	3.09
618	619	2.310309	GATGTTCGCATCGCCATGA	58.690	52.632	0.00	0.00	43.72	3.07
627	628	1.069204	GCATCGCCATGAGGACTCTTA	59.931	52.381	0.00	0.00	36.89	2.10
735	742	3.412386	AGAAATCTTGGGTCAAACGGAG	58.588	45.455	0.00	0.00	0.00	4.63
815	826	3.118738	ACGACTCTAATTCGGGAAAGCAT	60.119	43.478	0.00	0.00	40.92	3.79
818	829	3.118738	ACTCTAATTCGGGAAAGCATCGT	60.119	43.478	0.00	0.00	0.00	3.73
907	1181	1.634459	AGAGAAGAGAGGACCACGGTA	59.366	52.381	0.00	0.00	0.00	4.02
908	1182	2.041350	AGAGAAGAGAGGACCACGGTAA	59.959	50.000	0.00	0.00	0.00	2.85
909	1183	2.164017	GAGAAGAGAGGACCACGGTAAC	59.836	54.545	0.00	0.00	0.00	2.50
910	1184	1.891150	GAAGAGAGGACCACGGTAACA	59.109	52.381	0.00	0.00	0.00	2.41
941	1219	3.470567	CTGTTCGCGTCGCCACTC	61.471	66.667	12.44	0.65	0.00	3.51
977	1255	3.276091	CCGGCGTGTGCAAGAACA	61.276	61.111	6.01	0.00	45.35	3.18
999	1277	5.422331	ACAGGGAAAGATTCGAGTTAGATCA	59.578	40.000	0.00	0.00	0.00	2.92
1077	1355	1.005394	CGCTACGTTCTTGGTGGGT	60.005	57.895	0.00	0.00	0.00	4.51
1083	1361	1.527380	GTTCTTGGTGGGTGCGGAA	60.527	57.895	0.00	0.00	0.00	4.30
1330	3014	4.770874	TCGGGTGCTTTAGGCCGC	62.771	66.667	0.00	0.00	40.92	6.53
1392	3079	1.746787	GTTTCCACGTGTTTCCTTGGT	59.253	47.619	15.65	0.00	0.00	3.67
1393	3080	2.131776	TTCCACGTGTTTCCTTGGTT	57.868	45.000	15.65	0.00	0.00	3.67
1441	3130	5.091261	ACGATCTAGAAAAAGGTCAGCAT	57.909	39.130	0.00	0.00	0.00	3.79
1512	3208	2.561733	TGTGATCGATTGACCGAGTC	57.438	50.000	0.00	0.00	42.21	3.36
1584	3280	7.874940	TGTGAAGAAAATCTCATTGATCGTTT	58.125	30.769	0.00	0.00	33.57	3.60
1591	3287	7.558161	AAATCTCATTGATCGTTTCATGCTA	57.442	32.000	0.00	0.00	33.57	3.49
1608	3304	9.448438	TTTCATGCTAGAAGCTCAAAATACTTA	57.552	29.630	0.00	0.00	42.97	2.24
1677	3375	3.784701	ACTAGAGACGTCGCAATTGAT	57.215	42.857	21.54	1.89	0.00	2.57
1697	3395	0.110486	AGGGTAGCAAAGTGTGGGTG	59.890	55.000	0.00	0.00	0.00	4.61
1708	3406	2.415426	GTGGGTGTTTTGTGGCCG	59.585	61.111	0.00	0.00	0.00	6.13
1749	3694	5.047590	ACGGTATGATCTATTTACGATGGCA	60.048	40.000	0.00	0.00	0.00	4.92
1755	3700	7.468141	TGATCTATTTACGATGGCATCTACT	57.532	36.000	23.97	9.67	0.00	2.57
1784	4035	1.040339	TGTGGGTCTTTTGTGGCCAC	61.040	55.000	29.67	29.67	0.00	5.01
1802	4053	3.063997	GCCACGACAAGTTTGATCCATAG	59.936	47.826	0.00	0.00	0.00	2.23
1822	4213	1.039856	TGAAAGAAAAGCTGTGGGGC	58.960	50.000	0.00	0.00	0.00	5.80
1837	4228	1.903860	TGGGGCTGTACGTCTTACAAT	59.096	47.619	0.00	0.00	40.33	2.71
1839	4230	3.119029	TGGGGCTGTACGTCTTACAATAC	60.119	47.826	0.00	0.00	40.33	1.89
1855	4246	5.986501	ACAATACGGCCCAAAAGAAATAA	57.013	34.783	0.00	0.00	0.00	1.40
1897	4288	0.038310	CTTTCACAAGGAGGACCCCC	59.962	60.000	0.00	0.00	36.73	5.40
1930	4325	4.037923	ACAGAATCACAAATGTGTCCAACC	59.962	41.667	12.87	0.00	45.76	3.77
1942	4337	2.420722	GTGTCCAACCGAACTTCAACAA	59.579	45.455	0.00	0.00	0.00	2.83
1963	4358	1.009829	GATTCAATCTCGCCGTTGCT	58.990	50.000	0.00	0.00	34.43	3.91
2048	4443	8.047310	CCATGTATAGAAGTTGAACCTACCTTT	58.953	37.037	0.00	0.00	0.00	3.11
2086	4481	1.536331	GAGAGAATAGGGTAGGTCGCG	59.464	57.143	0.00	0.00	0.00	5.87
2194	4589	1.398692	TTGGTGAGCTTTGACCCAAC	58.601	50.000	7.77	0.00	30.51	3.77
2207	4602	0.396974	ACCCAACCTGCAAGCTTCAA	60.397	50.000	0.00	0.00	0.00	2.69
2208	4603	0.971386	CCCAACCTGCAAGCTTCAAT	59.029	50.000	0.00	0.00	0.00	2.57
2210	4605	2.562298	CCCAACCTGCAAGCTTCAATTA	59.438	45.455	0.00	0.00	0.00	1.40
2213	4608	4.100529	CAACCTGCAAGCTTCAATTATCG	58.899	43.478	0.00	0.00	0.00	2.92
2218	4613	5.008415	CCTGCAAGCTTCAATTATCGAATCT	59.992	40.000	0.00	0.00	0.00	2.40
2237	4632	3.102972	TCTCCCTCTTCTCATTGACCAG	58.897	50.000	0.00	0.00	0.00	4.00
2327	4722	0.984230	ATTGAGGGAGAGAACGCCAA	59.016	50.000	0.00	0.00	37.72	4.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	6.543465	CCAACCATGTGAATATCTTGAGCTTA	59.457	38.462	0.00	0.00	0.00	3.09
123	124	1.831106	TCCATATCCTGTGTTGCGAGT	59.169	47.619	0.00	0.00	0.00	4.18
152	153	4.479993	GCCATGGCGTGCTCTCCT	62.480	66.667	23.48	0.00	0.00	3.69
181	182	1.228154	GGTGAAACAAGCCGAGGGT	60.228	57.895	0.00	0.00	39.98	4.34
188	189	1.537202	CTACAGGCAGGTGAAACAAGC	59.463	52.381	0.00	0.00	39.98	4.01
206	207	1.199327	CTCCGCGTTGTCTTCACTCTA	59.801	52.381	4.92	0.00	0.00	2.43
301	302	0.757561	TGTCCTCAGTCGTTGGTCCA	60.758	55.000	0.00	0.00	0.00	4.02
313	314	2.567169	CCACTCCACAATAGTGTCCTCA	59.433	50.000	0.00	0.00	44.39	3.86
340	341	3.978272	AAGCTTCTGCGCTTCAGG	58.022	55.556	9.73	0.00	46.68	3.86
358	359	1.283321	CCTCTTTTCTCCTTCCCCTGG	59.717	57.143	0.00	0.00	0.00	4.45
373	374	0.035458	CCAGGCTGTCGAAACCTCTT	59.965	55.000	14.43	0.00	0.00	2.85
382	383	0.179076	TGCATATGACCAGGCTGTCG	60.179	55.000	14.43	1.04	38.11	4.35
472	473	2.898729	AGATGACATAGGCAAGGTCG	57.101	50.000	0.00	0.00	34.32	4.79
487	488	9.177608	CTCCACTCTCTAATATCCTCTAAGATG	57.822	40.741	0.00	0.00	0.00	2.90
499	500	3.821600	CCGCTAAGCTCCACTCTCTAATA	59.178	47.826	0.00	0.00	0.00	0.98
535	536	5.976586	TGTCTCACAAAACGTTATAAACCG	58.023	37.500	0.00	0.00	0.00	4.44
542	543	6.854496	AAGCTAATGTCTCACAAAACGTTA	57.146	33.333	0.00	0.00	0.00	3.18
568	569	1.072331	ACCCACTCCACACAAGCTAAG	59.928	52.381	0.00	0.00	0.00	2.18
571	572	1.149174	CACCCACTCCACACAAGCT	59.851	57.895	0.00	0.00	0.00	3.74
572	573	2.555547	GCACCCACTCCACACAAGC	61.556	63.158	0.00	0.00	0.00	4.01
573	574	0.886490	GAGCACCCACTCCACACAAG	60.886	60.000	0.00	0.00	0.00	3.16
618	619	8.616799	AGGAGAACAAGATTTATAAGAGTCCT	57.383	34.615	0.00	0.00	0.00	3.85
702	709	7.135591	ACCCAAGATTTCTTCAAATTGGAAA	57.864	32.000	3.40	0.00	37.43	3.13
706	713	7.306749	CGTTTGACCCAAGATTTCTTCAAATTG	60.307	37.037	7.88	0.00	32.44	2.32
719	726	1.133363	TTCCTCCGTTTGACCCAAGA	58.867	50.000	0.00	0.00	0.00	3.02
735	742	0.179129	TCGGATTACGCGAGGTTTCC	60.179	55.000	15.93	10.52	43.86	3.13
815	826	0.036765	GGGTGGCTGTATGAACACGA	60.037	55.000	0.00	0.00	34.78	4.35
818	829	1.376683	GCGGGTGGCTGTATGAACA	60.377	57.895	0.00	0.00	39.11	3.18
907	1181	0.886490	CAGAGGTTGAGGCGCTTGTT	60.886	55.000	7.64	0.00	0.00	2.83
908	1182	1.302033	CAGAGGTTGAGGCGCTTGT	60.302	57.895	7.64	0.00	0.00	3.16
909	1183	0.886490	AACAGAGGTTGAGGCGCTTG	60.886	55.000	7.64	0.00	35.46	4.01
910	1184	0.603975	GAACAGAGGTTGAGGCGCTT	60.604	55.000	7.64	0.00	37.36	4.68
977	1255	6.546428	TTGATCTAACTCGAATCTTTCCCT	57.454	37.500	0.00	0.00	0.00	4.20
999	1277	0.035056	CTTCCGGGTGCCTCTTCATT	60.035	55.000	0.00	0.00	0.00	2.57
1053	1331	1.374252	CAAGAACGTAGCGCACCCT	60.374	57.895	11.47	0.00	0.00	4.34
1138	1422	2.429767	CGAGCAGCTCCAGGATCCA	61.430	63.158	17.16	0.00	0.00	3.41
1163	1447	1.741706	CGTAGCCGTACTTCTCTTCCA	59.258	52.381	0.00	0.00	0.00	3.53
1330	3014	3.427503	GGATCCTAAACAACAACATGCGG	60.428	47.826	3.84	0.00	0.00	5.69
1392	3079	4.142687	GGGATTCGATTCGAGCAAGAAAAA	60.143	41.667	8.98	0.00	37.14	1.94
1393	3080	3.374058	GGGATTCGATTCGAGCAAGAAAA	59.626	43.478	8.98	0.00	37.14	2.29
1512	3208	9.848172	GTGCAAATCAGTTAGTTACAAAATTTG	57.152	29.630	3.89	3.89	36.40	2.32
1558	3254	7.069852	ACGATCAATGAGATTTTCTTCACAG	57.930	36.000	0.00	0.00	37.00	3.66
1564	3260	6.971184	GCATGAAACGATCAATGAGATTTTCT	59.029	34.615	0.00	0.00	42.54	2.52
1584	3280	9.049523	CATAAGTATTTTGAGCTTCTAGCATGA	57.950	33.333	0.00	0.00	45.56	3.07
1591	3287	8.870075	AACTTCCATAAGTATTTTGAGCTTCT	57.130	30.769	0.00	0.00	45.37	2.85
1677	3375	1.349688	CACCCACACTTTGCTACCCTA	59.650	52.381	0.00	0.00	0.00	3.53
1697	3395	1.278637	CTCGTCACGGCCACAAAAC	59.721	57.895	2.24	0.00	0.00	2.43
1708	3406	3.572584	ACCGTAGAATCAAACTCGTCAC	58.427	45.455	0.00	0.00	0.00	3.67
1749	3694	2.555227	CCCACAAACTGGCCAAGTAGAT	60.555	50.000	7.01	0.00	38.56	1.98
1755	3700	0.032615	AAGACCCACAAACTGGCCAA	60.033	50.000	7.01	0.00	39.01	4.52
1760	3705	2.738321	GCCACAAAAGACCCACAAACTG	60.738	50.000	0.00	0.00	0.00	3.16
1784	4035	6.368791	TCTTTCACTATGGATCAAACTTGTCG	59.631	38.462	0.00	0.00	0.00	4.35
1802	4053	1.269778	GCCCCACAGCTTTTCTTTCAC	60.270	52.381	0.00	0.00	0.00	3.18
1822	4213	3.111098	GGCCGTATTGTAAGACGTACAG	58.889	50.000	10.36	0.00	43.61	2.74
1837	4228	6.844097	ATTTCTTATTTCTTTTGGGCCGTA	57.156	33.333	0.00	0.00	0.00	4.02
1839	4230	5.163864	GCAATTTCTTATTTCTTTTGGGCCG	60.164	40.000	0.00	0.00	0.00	6.13
1855	4246	8.422577	AAGTTAGGGACTTATTTGCAATTTCT	57.577	30.769	0.00	0.00	46.61	2.52
1876	4267	1.145119	GGGGTCCTCCTTGTGAAAGTT	59.855	52.381	0.00	0.00	35.33	2.66
1897	4288	8.092521	ACATTTGTGATTCTGTCTTCTAGTTG	57.907	34.615	0.00	0.00	0.00	3.16
1930	4325	6.246420	AGATTGAATCCTTGTTGAAGTTCG	57.754	37.500	0.75	0.00	0.00	3.95
1942	4337	1.656652	CAACGGCGAGATTGAATCCT	58.343	50.000	16.62	0.00	0.00	3.24
1963	4358	0.494551	TCCCCAAGTGGTTCTCCCTA	59.505	55.000	0.00	0.00	0.00	3.53
2086	4481	1.683385	ACTGCTTCTTCTGGCCAAAAC	59.317	47.619	7.01	0.00	0.00	2.43
2128	4523	3.674997	ACACCTTCGTATGCATTCACTT	58.325	40.909	3.54	0.00	0.00	3.16
2194	4589	4.621068	TTCGATAATTGAAGCTTGCAGG	57.379	40.909	2.10	0.00	0.00	4.85
2207	4602	7.234371	TCAATGAGAAGAGGGAGATTCGATAAT	59.766	37.037	0.00	0.00	0.00	1.28
2208	4603	6.551227	TCAATGAGAAGAGGGAGATTCGATAA	59.449	38.462	0.00	0.00	0.00	1.75
2210	4605	4.898265	TCAATGAGAAGAGGGAGATTCGAT	59.102	41.667	0.00	0.00	0.00	3.59
2213	4608	4.163078	TGGTCAATGAGAAGAGGGAGATTC	59.837	45.833	0.00	0.00	0.00	2.52
2218	4613	1.556911	GCTGGTCAATGAGAAGAGGGA	59.443	52.381	0.00	0.00	0.00	4.20
2237	4632	0.937304	TCTTGAAGTTGTCGCTGTGC	59.063	50.000	0.00	0.00	0.00	4.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.