Multiple sequence alignment - TraesCS6D01G207700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G207700 chr6D 100.000 6974 0 0 1 6974 292970772 292963799 0.000000e+00 12879
1 TraesCS6D01G207700 chr6B 94.901 3373 119 19 3618 6974 457422093 457418758 0.000000e+00 5227
2 TraesCS6D01G207700 chr6B 90.975 1241 40 21 606 1806 457425479 457424271 0.000000e+00 1605
3 TraesCS6D01G207700 chr6B 95.450 1011 35 6 2616 3623 457423174 457422172 0.000000e+00 1602
4 TraesCS6D01G207700 chr6B 92.888 703 26 8 1836 2516 457424279 457423579 0.000000e+00 1000
5 TraesCS6D01G207700 chr6A 95.062 3240 115 22 3574 6775 428071111 428074343 0.000000e+00 5055
6 TraesCS6D01G207700 chr6A 90.666 1682 94 28 179 1803 428066891 428068566 0.000000e+00 2178
7 TraesCS6D01G207700 chr6A 94.421 968 42 5 2617 3576 428070020 428070983 0.000000e+00 1478
8 TraesCS6D01G207700 chr6A 94.286 805 20 9 1836 2621 428068561 428069358 0.000000e+00 1208
9 TraesCS6D01G207700 chr6A 88.069 461 32 10 2179 2621 428069536 428069991 6.200000e-145 525
10 TraesCS6D01G207700 chr6A 98.773 163 2 0 6812 6974 428074348 428074510 2.460000e-74 291
11 TraesCS6D01G207700 chr6A 94.771 153 8 0 2616 2768 428069387 428069539 9.040000e-59 239
12 TraesCS6D01G207700 chr2B 78.879 1837 355 27 4085 5909 546203816 546202001 0.000000e+00 1212
13 TraesCS6D01G207700 chr2B 87.117 163 8 4 21 170 680314003 680314165 9.300000e-39 172
14 TraesCS6D01G207700 chr2B 87.611 113 4 2 21 123 450951788 450951900 9.500000e-24 122
15 TraesCS6D01G207700 chr2A 78.583 1835 360 25 4085 5907 607997949 607996136 0.000000e+00 1181
16 TraesCS6D01G207700 chr7D 88.333 180 14 4 3 175 48089338 48089517 7.090000e-50 209
17 TraesCS6D01G207700 chr7D 87.766 188 8 6 3 175 621616308 621616121 9.170000e-49 206
18 TraesCS6D01G207700 chr7D 85.632 174 9 8 16 174 525156928 525157100 1.200000e-37 169
19 TraesCS6D01G207700 chr4A 88.953 172 15 2 6 173 59306808 59306637 7.090000e-50 209
20 TraesCS6D01G207700 chrUn 87.766 188 8 6 3 175 314008991 314008804 9.170000e-49 206
21 TraesCS6D01G207700 chrUn 86.228 167 9 6 21 174 67356114 67356279 1.200000e-37 169
22 TraesCS6D01G207700 chr3D 86.316 190 10 7 3 177 390564316 390564504 7.140000e-45 193
23 TraesCS6D01G207700 chr5A 86.905 168 8 4 17 170 703393410 703393577 7.190000e-40 176
24 TraesCS6D01G207700 chr1B 86.826 167 8 4 21 174 322476747 322476582 2.590000e-39 174
25 TraesCS6D01G207700 chr2D 85.207 169 21 3 9 174 206244473 206244306 3.340000e-38 171
26 TraesCS6D01G207700 chr7B 85.083 181 10 9 21 187 478424512 478424689 1.200000e-37 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G207700 chr6D 292963799 292970772 6973 True 12879.000000 12879 100.000000 1 6974 1 chr6D.!!$R1 6973
1 TraesCS6D01G207700 chr6B 457418758 457425479 6721 True 2358.500000 5227 93.553500 606 6974 4 chr6B.!!$R1 6368
2 TraesCS6D01G207700 chr6A 428066891 428074510 7619 False 1567.714286 5055 93.721143 179 6974 7 chr6A.!!$F1 6795
3 TraesCS6D01G207700 chr2B 546202001 546203816 1815 True 1212.000000 1212 78.879000 4085 5909 1 chr2B.!!$R1 1824
4 TraesCS6D01G207700 chr2A 607996136 607997949 1813 True 1181.000000 1181 78.583000 4085 5907 1 chr2A.!!$R1 1822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.169009 GCGTCCAATTTCTCAGCCAC 59.831 55.000 0.00 0.00 0.00 5.01 F
129 130 0.240945 GCATACTTGTGTGTGGCCAC 59.759 55.000 29.67 29.67 42.19 5.01 F
568 574 0.320771 TTTCGTCCTTGGAGCTCAGC 60.321 55.000 17.19 0.00 0.00 4.26 F
925 971 1.064166 CCCCTCGTCCTAGTAGTTCCA 60.064 57.143 0.00 0.00 0.00 3.53 F
1658 1743 1.072505 TCCCCGAGGAAACACAAGC 59.927 57.895 0.00 0.00 40.08 4.01 F
3291 4346 0.737219 GCATGCATGAGGTTGAGACC 59.263 55.000 30.64 4.36 46.92 3.85 F
4252 5526 3.890147 AGAGATACCCTTTAATCGCTCGT 59.110 43.478 0.00 0.00 27.53 4.18 F
5307 6581 0.912486 GTAAGGTGGCAGGAGATGGT 59.088 55.000 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1740 0.036732 TTGTGAGAATCTGCGGGCTT 59.963 50.0 0.00 0.00 34.92 4.35 R
1925 2011 0.179045 GCCTTGGAGGATACGCACAT 60.179 55.0 0.00 0.00 46.39 3.21 R
2400 2509 0.881118 CGGTCAATTCCCCACACTTG 59.119 55.0 0.00 0.00 0.00 3.16 R
2741 3788 0.453793 CTGCCGACACCACAAAAACA 59.546 50.0 0.00 0.00 0.00 2.83 R
3498 4555 1.364626 GGTTCAGCATGCAGTCGGAG 61.365 60.0 21.98 0.41 34.76 4.63 R
4537 5811 0.552848 GGGGCCTTCAGATGGATCAA 59.447 55.0 0.84 0.00 0.00 2.57 R
5934 7208 1.017387 GGATGAATGACCTTGTCGGC 58.983 55.0 0.00 0.00 34.95 5.54 R
6383 7662 0.673985 TCACACCAGACGAGACCAAG 59.326 55.0 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.081888 GACATGTGTTTGATTTTTGCCAC 57.918 39.130 1.15 0.00 0.00 5.01
23 24 4.768583 ACATGTGTTTGATTTTTGCCACT 58.231 34.783 0.00 0.00 0.00 4.00
24 25 5.184711 ACATGTGTTTGATTTTTGCCACTT 58.815 33.333 0.00 0.00 0.00 3.16
25 26 5.647225 ACATGTGTTTGATTTTTGCCACTTT 59.353 32.000 0.00 0.00 0.00 2.66
26 27 6.820656 ACATGTGTTTGATTTTTGCCACTTTA 59.179 30.769 0.00 0.00 0.00 1.85
27 28 7.498570 ACATGTGTTTGATTTTTGCCACTTTAT 59.501 29.630 0.00 0.00 0.00 1.40
28 29 7.856145 TGTGTTTGATTTTTGCCACTTTATT 57.144 28.000 0.00 0.00 0.00 1.40
29 30 7.692088 TGTGTTTGATTTTTGCCACTTTATTG 58.308 30.769 0.00 0.00 0.00 1.90
30 31 6.632434 GTGTTTGATTTTTGCCACTTTATTGC 59.368 34.615 0.00 0.00 0.00 3.56
31 32 5.938438 TTGATTTTTGCCACTTTATTGCC 57.062 34.783 0.00 0.00 0.00 4.52
32 33 4.322567 TGATTTTTGCCACTTTATTGCCC 58.677 39.130 0.00 0.00 0.00 5.36
33 34 2.849294 TTTTGCCACTTTATTGCCCC 57.151 45.000 0.00 0.00 0.00 5.80
34 35 2.022718 TTTGCCACTTTATTGCCCCT 57.977 45.000 0.00 0.00 0.00 4.79
35 36 2.909504 TTGCCACTTTATTGCCCCTA 57.090 45.000 0.00 0.00 0.00 3.53
36 37 3.396685 TTGCCACTTTATTGCCCCTAT 57.603 42.857 0.00 0.00 0.00 2.57
37 38 2.665165 TGCCACTTTATTGCCCCTATG 58.335 47.619 0.00 0.00 0.00 2.23
38 39 1.963515 GCCACTTTATTGCCCCTATGG 59.036 52.381 0.00 0.00 37.09 2.74
39 40 2.689723 GCCACTTTATTGCCCCTATGGT 60.690 50.000 0.00 0.00 36.04 3.55
40 41 3.222603 CCACTTTATTGCCCCTATGGTC 58.777 50.000 0.00 0.00 36.04 4.02
41 42 3.222603 CACTTTATTGCCCCTATGGTCC 58.777 50.000 0.00 0.00 36.04 4.46
42 43 2.856231 ACTTTATTGCCCCTATGGTCCA 59.144 45.455 0.00 0.00 36.04 4.02
43 44 3.467103 ACTTTATTGCCCCTATGGTCCAT 59.533 43.478 9.88 9.88 36.04 3.41
44 45 4.078630 ACTTTATTGCCCCTATGGTCCATT 60.079 41.667 10.33 0.00 36.04 3.16
45 46 4.551215 TTATTGCCCCTATGGTCCATTT 57.449 40.909 10.33 0.00 36.04 2.32
46 47 2.157640 TTGCCCCTATGGTCCATTTG 57.842 50.000 10.33 3.71 36.04 2.32
47 48 1.006813 TGCCCCTATGGTCCATTTGT 58.993 50.000 10.33 0.00 36.04 2.83
48 49 1.064017 TGCCCCTATGGTCCATTTGTC 60.064 52.381 10.33 0.00 36.04 3.18
49 50 1.064017 GCCCCTATGGTCCATTTGTCA 60.064 52.381 10.33 0.00 36.04 3.58
50 51 2.424812 GCCCCTATGGTCCATTTGTCAT 60.425 50.000 10.33 0.00 36.04 3.06
51 52 3.181434 GCCCCTATGGTCCATTTGTCATA 60.181 47.826 10.33 0.00 36.04 2.15
52 53 4.655963 CCCCTATGGTCCATTTGTCATAG 58.344 47.826 10.33 0.00 38.95 2.23
53 54 4.350816 CCCCTATGGTCCATTTGTCATAGA 59.649 45.833 10.33 0.00 40.64 1.98
54 55 5.513788 CCCCTATGGTCCATTTGTCATAGAG 60.514 48.000 10.33 0.00 40.64 2.43
55 56 5.307976 CCCTATGGTCCATTTGTCATAGAGA 59.692 44.000 10.33 0.00 40.64 3.10
87 88 4.403015 CCAAAATTTGGCGTCCAATTTC 57.597 40.909 12.23 0.00 43.55 2.17
88 89 4.064388 CCAAAATTTGGCGTCCAATTTCT 58.936 39.130 12.23 1.44 43.55 2.52
89 90 4.152223 CCAAAATTTGGCGTCCAATTTCTC 59.848 41.667 12.23 0.00 43.55 2.87
90 91 4.599047 AAATTTGGCGTCCAATTTCTCA 57.401 36.364 6.01 0.00 43.55 3.27
91 92 3.855689 ATTTGGCGTCCAATTTCTCAG 57.144 42.857 11.30 0.00 43.55 3.35
92 93 0.881118 TTGGCGTCCAATTTCTCAGC 59.119 50.000 7.15 0.00 38.75 4.26
93 94 0.960364 TGGCGTCCAATTTCTCAGCC 60.960 55.000 0.00 0.00 43.05 4.85
94 95 0.960364 GGCGTCCAATTTCTCAGCCA 60.960 55.000 0.00 0.00 42.37 4.75
95 96 0.169009 GCGTCCAATTTCTCAGCCAC 59.831 55.000 0.00 0.00 0.00 5.01
96 97 1.522668 CGTCCAATTTCTCAGCCACA 58.477 50.000 0.00 0.00 0.00 4.17
97 98 1.197721 CGTCCAATTTCTCAGCCACAC 59.802 52.381 0.00 0.00 0.00 3.82
98 99 2.508526 GTCCAATTTCTCAGCCACACT 58.491 47.619 0.00 0.00 0.00 3.55
99 100 2.887152 GTCCAATTTCTCAGCCACACTT 59.113 45.455 0.00 0.00 0.00 3.16
100 101 2.886523 TCCAATTTCTCAGCCACACTTG 59.113 45.455 0.00 0.00 0.00 3.16
101 102 2.624838 CCAATTTCTCAGCCACACTTGT 59.375 45.455 0.00 0.00 0.00 3.16
102 103 3.551454 CCAATTTCTCAGCCACACTTGTG 60.551 47.826 2.13 2.13 45.23 3.33
103 104 2.418368 TTTCTCAGCCACACTTGTGT 57.582 45.000 8.52 0.00 44.21 3.72
112 113 3.524014 CACTTGTGTGGCTTGGCA 58.476 55.556 0.00 0.00 40.33 4.92
113 114 2.043625 CACTTGTGTGGCTTGGCAT 58.956 52.632 0.00 0.00 40.33 4.40
114 115 1.246649 CACTTGTGTGGCTTGGCATA 58.753 50.000 0.00 0.00 40.33 3.14
115 116 1.068333 CACTTGTGTGGCTTGGCATAC 60.068 52.381 15.04 15.04 40.33 2.39
116 117 1.202927 ACTTGTGTGGCTTGGCATACT 60.203 47.619 20.45 2.93 0.00 2.12
117 118 1.888512 CTTGTGTGGCTTGGCATACTT 59.111 47.619 20.45 0.00 0.00 2.24
118 119 1.246649 TGTGTGGCTTGGCATACTTG 58.753 50.000 20.45 0.00 0.00 3.16
119 120 1.247567 GTGTGGCTTGGCATACTTGT 58.752 50.000 14.73 0.00 0.00 3.16
120 121 1.068333 GTGTGGCTTGGCATACTTGTG 60.068 52.381 14.73 0.00 0.00 3.33
121 122 1.247567 GTGGCTTGGCATACTTGTGT 58.752 50.000 0.00 0.00 0.00 3.72
122 123 1.068333 GTGGCTTGGCATACTTGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
123 124 1.247567 GGCTTGGCATACTTGTGTGT 58.752 50.000 0.00 0.00 0.00 3.72
124 125 1.068333 GGCTTGGCATACTTGTGTGTG 60.068 52.381 0.00 0.00 38.17 3.82
125 126 1.068333 GCTTGGCATACTTGTGTGTGG 60.068 52.381 0.00 0.00 36.09 4.17
128 129 2.639970 GCATACTTGTGTGTGGCCA 58.360 52.632 0.00 0.00 36.09 5.36
129 130 0.240945 GCATACTTGTGTGTGGCCAC 59.759 55.000 29.67 29.67 42.19 5.01
138 139 1.993956 TGTGTGGCCACATTTTAGCT 58.006 45.000 39.53 0.00 46.45 3.32
139 140 2.315176 TGTGTGGCCACATTTTAGCTT 58.685 42.857 39.53 0.00 46.45 3.74
140 141 2.035704 TGTGTGGCCACATTTTAGCTTG 59.964 45.455 39.53 0.00 46.45 4.01
141 142 2.295909 GTGTGGCCACATTTTAGCTTGA 59.704 45.455 39.53 11.09 43.97 3.02
142 143 2.295909 TGTGGCCACATTTTAGCTTGAC 59.704 45.455 34.74 3.63 36.21 3.18
143 144 1.892474 TGGCCACATTTTAGCTTGACC 59.108 47.619 0.00 0.00 0.00 4.02
144 145 1.892474 GGCCACATTTTAGCTTGACCA 59.108 47.619 0.00 0.00 0.00 4.02
145 146 2.352715 GGCCACATTTTAGCTTGACCAC 60.353 50.000 0.00 0.00 0.00 4.16
146 147 2.295909 GCCACATTTTAGCTTGACCACA 59.704 45.455 0.00 0.00 0.00 4.17
147 148 3.857010 GCCACATTTTAGCTTGACCACAC 60.857 47.826 0.00 0.00 0.00 3.82
148 149 3.569701 CCACATTTTAGCTTGACCACACT 59.430 43.478 0.00 0.00 0.00 3.55
149 150 4.759693 CCACATTTTAGCTTGACCACACTA 59.240 41.667 0.00 0.00 0.00 2.74
150 151 5.106555 CCACATTTTAGCTTGACCACACTAG 60.107 44.000 0.00 0.00 0.00 2.57
151 152 5.470098 CACATTTTAGCTTGACCACACTAGT 59.530 40.000 0.00 0.00 0.00 2.57
152 153 5.701290 ACATTTTAGCTTGACCACACTAGTC 59.299 40.000 0.00 0.00 34.72 2.59
153 154 5.546621 TTTTAGCTTGACCACACTAGTCT 57.453 39.130 0.00 0.00 35.21 3.24
154 155 4.785511 TTAGCTTGACCACACTAGTCTC 57.214 45.455 0.00 0.00 35.21 3.36
155 156 1.896465 AGCTTGACCACACTAGTCTCC 59.104 52.381 0.00 0.00 35.21 3.71
156 157 1.618837 GCTTGACCACACTAGTCTCCA 59.381 52.381 0.00 0.00 35.21 3.86
157 158 2.037251 GCTTGACCACACTAGTCTCCAA 59.963 50.000 0.00 0.00 35.21 3.53
158 159 3.654414 CTTGACCACACTAGTCTCCAAC 58.346 50.000 0.00 0.00 35.21 3.77
159 160 1.968493 TGACCACACTAGTCTCCAACC 59.032 52.381 0.00 0.00 35.21 3.77
160 161 1.968493 GACCACACTAGTCTCCAACCA 59.032 52.381 0.00 0.00 0.00 3.67
161 162 2.367567 GACCACACTAGTCTCCAACCAA 59.632 50.000 0.00 0.00 0.00 3.67
162 163 2.775384 ACCACACTAGTCTCCAACCAAA 59.225 45.455 0.00 0.00 0.00 3.28
163 164 3.139077 CCACACTAGTCTCCAACCAAAC 58.861 50.000 0.00 0.00 0.00 2.93
164 165 3.433031 CCACACTAGTCTCCAACCAAACA 60.433 47.826 0.00 0.00 0.00 2.83
165 166 3.809832 CACACTAGTCTCCAACCAAACAG 59.190 47.826 0.00 0.00 0.00 3.16
166 167 3.709653 ACACTAGTCTCCAACCAAACAGA 59.290 43.478 0.00 0.00 0.00 3.41
167 168 4.058817 CACTAGTCTCCAACCAAACAGAC 58.941 47.826 0.00 0.00 36.32 3.51
168 169 2.640316 AGTCTCCAACCAAACAGACC 57.360 50.000 0.00 0.00 36.68 3.85
169 170 1.143073 AGTCTCCAACCAAACAGACCC 59.857 52.381 0.00 0.00 36.68 4.46
170 171 0.476771 TCTCCAACCAAACAGACCCC 59.523 55.000 0.00 0.00 0.00 4.95
171 172 0.478507 CTCCAACCAAACAGACCCCT 59.521 55.000 0.00 0.00 0.00 4.79
172 173 1.702957 CTCCAACCAAACAGACCCCTA 59.297 52.381 0.00 0.00 0.00 3.53
173 174 2.107552 CTCCAACCAAACAGACCCCTAA 59.892 50.000 0.00 0.00 0.00 2.69
174 175 2.719705 TCCAACCAAACAGACCCCTAAT 59.280 45.455 0.00 0.00 0.00 1.73
175 176 3.141272 TCCAACCAAACAGACCCCTAATT 59.859 43.478 0.00 0.00 0.00 1.40
176 177 3.901222 CCAACCAAACAGACCCCTAATTT 59.099 43.478 0.00 0.00 0.00 1.82
177 178 4.021456 CCAACCAAACAGACCCCTAATTTC 60.021 45.833 0.00 0.00 0.00 2.17
178 179 4.741928 ACCAAACAGACCCCTAATTTCT 57.258 40.909 0.00 0.00 0.00 2.52
179 180 4.663334 ACCAAACAGACCCCTAATTTCTC 58.337 43.478 0.00 0.00 0.00 2.87
180 181 4.105697 ACCAAACAGACCCCTAATTTCTCA 59.894 41.667 0.00 0.00 0.00 3.27
181 182 4.459337 CCAAACAGACCCCTAATTTCTCAC 59.541 45.833 0.00 0.00 0.00 3.51
182 183 4.993705 AACAGACCCCTAATTTCTCACA 57.006 40.909 0.00 0.00 0.00 3.58
183 184 4.993705 ACAGACCCCTAATTTCTCACAA 57.006 40.909 0.00 0.00 0.00 3.33
184 185 4.652822 ACAGACCCCTAATTTCTCACAAC 58.347 43.478 0.00 0.00 0.00 3.32
185 186 3.684788 CAGACCCCTAATTTCTCACAACG 59.315 47.826 0.00 0.00 0.00 4.10
195 196 6.612247 AATTTCTCACAACGTACAACATCA 57.388 33.333 0.00 0.00 0.00 3.07
237 238 7.615582 AATGTATATTCTTGGGCATGTATCG 57.384 36.000 0.00 0.00 0.00 2.92
263 264 6.377327 AAATACAATTCCATCCTTAGCACG 57.623 37.500 0.00 0.00 0.00 5.34
275 277 4.952460 TCCTTAGCACGTTTAGTTTCAGT 58.048 39.130 0.00 0.00 0.00 3.41
293 295 7.871463 AGTTTCAGTAGTATGTGGTTGTAGAAC 59.129 37.037 0.00 0.00 0.00 3.01
299 301 8.208903 AGTAGTATGTGGTTGTAGAACTGTTTT 58.791 33.333 2.43 0.00 32.15 2.43
300 302 7.259290 AGTATGTGGTTGTAGAACTGTTTTG 57.741 36.000 2.43 0.00 32.15 2.44
314 316 7.945134 AGAACTGTTTTGCAATGAACTTATCT 58.055 30.769 13.62 10.84 0.00 1.98
323 325 6.607689 TGCAATGAACTTATCTTGTAAACCG 58.392 36.000 0.00 0.00 0.00 4.44
343 346 1.915141 CTGGCTGGTTTGACAAGGAT 58.085 50.000 0.00 0.00 0.00 3.24
346 349 4.019174 CTGGCTGGTTTGACAAGGATATT 58.981 43.478 0.00 0.00 0.00 1.28
361 364 5.441718 AGGATATTGTCACAGTTCACCAT 57.558 39.130 0.00 0.00 0.00 3.55
374 380 8.812972 TCACAGTTCACCATAAGTAAGTAAGAT 58.187 33.333 0.00 0.00 0.00 2.40
376 382 7.974501 ACAGTTCACCATAAGTAAGTAAGATCG 59.025 37.037 0.00 0.00 0.00 3.69
392 398 9.924650 AAGTAAGATCGTACAAAGTCTACAAAT 57.075 29.630 19.05 0.00 0.00 2.32
393 399 9.570488 AGTAAGATCGTACAAAGTCTACAAATC 57.430 33.333 19.05 0.00 0.00 2.17
410 416 1.584724 ATCCAGTCCTGATTTCCGGT 58.415 50.000 0.00 0.00 0.00 5.28
414 420 2.434336 CCAGTCCTGATTTCCGGTATGA 59.566 50.000 0.00 0.00 0.00 2.15
441 447 6.768861 TCGGTCAAAAATATACCAATACAGGG 59.231 38.462 0.00 0.00 32.55 4.45
533 539 2.877168 CCACGGGTGCTACTAGTACTAG 59.123 54.545 25.30 25.30 39.04 2.57
568 574 0.320771 TTTCGTCCTTGGAGCTCAGC 60.321 55.000 17.19 0.00 0.00 4.26
922 968 2.357986 CCTTCCCCTCGTCCTAGTAGTT 60.358 54.545 0.00 0.00 0.00 2.24
925 971 1.064166 CCCCTCGTCCTAGTAGTTCCA 60.064 57.143 0.00 0.00 0.00 3.53
926 972 2.022934 CCCTCGTCCTAGTAGTTCCAC 58.977 57.143 0.00 0.00 0.00 4.02
1542 1626 7.201556 CGTCTAACAGTTTTGTATGCATCTGAT 60.202 37.037 15.49 7.97 36.23 2.90
1655 1740 1.752198 CTGTCCCCGAGGAAACACA 59.248 57.895 0.00 0.00 46.38 3.72
1658 1743 1.072505 TCCCCGAGGAAACACAAGC 59.927 57.895 0.00 0.00 40.08 4.01
1704 1789 7.365741 AGTTCCATTCGCATATTTCATGATTC 58.634 34.615 0.00 0.00 0.00 2.52
1707 1792 5.571741 CCATTCGCATATTTCATGATTCTGC 59.428 40.000 0.00 3.24 0.00 4.26
1716 1801 9.976511 CATATTTCATGATTCTGCCAAACTATT 57.023 29.630 0.00 0.00 0.00 1.73
1725 1811 8.522830 TGATTCTGCCAAACTATTCCTTTTTAG 58.477 33.333 0.00 0.00 0.00 1.85
1742 1828 7.041721 CCTTTTTAGCATTATTCCAAGGGAAC 58.958 38.462 0.00 0.00 45.07 3.62
1797 1883 7.531716 CAAAATGATGCTATTTTGTTTGCCAT 58.468 30.769 18.11 0.00 45.87 4.40
1798 1884 6.913873 AATGATGCTATTTTGTTTGCCATC 57.086 33.333 0.00 0.00 0.00 3.51
1799 1885 5.664294 TGATGCTATTTTGTTTGCCATCT 57.336 34.783 0.00 0.00 0.00 2.90
1800 1886 6.040209 TGATGCTATTTTGTTTGCCATCTT 57.960 33.333 0.00 0.00 0.00 2.40
1801 1887 6.101332 TGATGCTATTTTGTTTGCCATCTTC 58.899 36.000 0.00 0.00 0.00 2.87
1802 1888 5.726980 TGCTATTTTGTTTGCCATCTTCT 57.273 34.783 0.00 0.00 0.00 2.85
1803 1889 6.832520 TGCTATTTTGTTTGCCATCTTCTA 57.167 33.333 0.00 0.00 0.00 2.10
1804 1890 6.620678 TGCTATTTTGTTTGCCATCTTCTAC 58.379 36.000 0.00 0.00 0.00 2.59
1805 1891 6.208402 TGCTATTTTGTTTGCCATCTTCTACA 59.792 34.615 0.00 0.00 0.00 2.74
1806 1892 6.528072 GCTATTTTGTTTGCCATCTTCTACAC 59.472 38.462 0.00 0.00 0.00 2.90
1807 1893 4.846779 TTTGTTTGCCATCTTCTACACC 57.153 40.909 0.00 0.00 0.00 4.16
1808 1894 3.500448 TGTTTGCCATCTTCTACACCA 57.500 42.857 0.00 0.00 0.00 4.17
1809 1895 4.032960 TGTTTGCCATCTTCTACACCAT 57.967 40.909 0.00 0.00 0.00 3.55
1810 1896 4.009675 TGTTTGCCATCTTCTACACCATC 58.990 43.478 0.00 0.00 0.00 3.51
1811 1897 3.281727 TTGCCATCTTCTACACCATCC 57.718 47.619 0.00 0.00 0.00 3.51
1812 1898 2.481441 TGCCATCTTCTACACCATCCT 58.519 47.619 0.00 0.00 0.00 3.24
1813 1899 2.846206 TGCCATCTTCTACACCATCCTT 59.154 45.455 0.00 0.00 0.00 3.36
1814 1900 4.037222 TGCCATCTTCTACACCATCCTTA 58.963 43.478 0.00 0.00 0.00 2.69
1815 1901 4.660303 TGCCATCTTCTACACCATCCTTAT 59.340 41.667 0.00 0.00 0.00 1.73
1816 1902 5.132648 TGCCATCTTCTACACCATCCTTATT 59.867 40.000 0.00 0.00 0.00 1.40
1817 1903 6.064717 GCCATCTTCTACACCATCCTTATTT 58.935 40.000 0.00 0.00 0.00 1.40
1818 1904 6.547510 GCCATCTTCTACACCATCCTTATTTT 59.452 38.462 0.00 0.00 0.00 1.82
1819 1905 7.255277 GCCATCTTCTACACCATCCTTATTTTC 60.255 40.741 0.00 0.00 0.00 2.29
1820 1906 7.229506 CCATCTTCTACACCATCCTTATTTTCC 59.770 40.741 0.00 0.00 0.00 3.13
1821 1907 7.265599 TCTTCTACACCATCCTTATTTTCCA 57.734 36.000 0.00 0.00 0.00 3.53
1822 1908 7.872138 TCTTCTACACCATCCTTATTTTCCAT 58.128 34.615 0.00 0.00 0.00 3.41
1823 1909 8.998814 TCTTCTACACCATCCTTATTTTCCATA 58.001 33.333 0.00 0.00 0.00 2.74
1824 1910 9.277783 CTTCTACACCATCCTTATTTTCCATAG 57.722 37.037 0.00 0.00 0.00 2.23
1825 1911 7.224297 TCTACACCATCCTTATTTTCCATAGC 58.776 38.462 0.00 0.00 0.00 2.97
1826 1912 6.018433 ACACCATCCTTATTTTCCATAGCT 57.982 37.500 0.00 0.00 0.00 3.32
1827 1913 7.149202 ACACCATCCTTATTTTCCATAGCTA 57.851 36.000 0.00 0.00 0.00 3.32
1828 1914 7.227156 ACACCATCCTTATTTTCCATAGCTAG 58.773 38.462 0.00 0.00 0.00 3.42
1829 1915 7.147302 ACACCATCCTTATTTTCCATAGCTAGT 60.147 37.037 0.00 0.00 0.00 2.57
1830 1916 7.389053 CACCATCCTTATTTTCCATAGCTAGTC 59.611 40.741 0.00 0.00 0.00 2.59
1831 1917 6.591834 CCATCCTTATTTTCCATAGCTAGTCG 59.408 42.308 0.00 0.00 0.00 4.18
1832 1918 5.539048 TCCTTATTTTCCATAGCTAGTCGC 58.461 41.667 0.00 0.00 39.57 5.19
1907 1993 7.339212 CCCAATTTGTTTCCTAGTCATATGTCA 59.661 37.037 1.90 0.00 0.00 3.58
1914 2000 7.343057 TGTTTCCTAGTCATATGTCAGATCAGT 59.657 37.037 1.90 0.00 0.00 3.41
1931 2017 8.015087 TCAGATCAGTTTTTAGTTTTATGTGCG 58.985 33.333 0.00 0.00 0.00 5.34
2071 2161 2.290071 CGAAAGGGAAAGTTGGCCTCTA 60.290 50.000 3.32 0.00 0.00 2.43
2115 2205 4.675565 GTCACGTGTATCATCTTACCATCG 59.324 45.833 16.51 0.00 0.00 3.84
2168 2259 4.701651 TCCAACTTGAGCTGTTATCCATTG 59.298 41.667 0.00 0.00 0.00 2.82
2292 2383 4.043310 ACTTTGAATGGTCCAGGATCTGAA 59.957 41.667 0.07 0.00 32.44 3.02
2400 2509 1.368641 TGGTGAGATATTGTGCACGC 58.631 50.000 13.13 0.00 32.24 5.34
2502 2613 8.730680 GTTGACATTTATCTTCATGGTGTTAGT 58.269 33.333 0.00 0.00 0.00 2.24
2539 2920 1.322442 GCTTGCCTTGGTCAGAACTT 58.678 50.000 0.00 0.00 0.00 2.66
2669 3085 4.005650 AGTGTGATGCCTGAACTAATGTG 58.994 43.478 0.00 0.00 0.00 3.21
2680 3096 6.128254 GCCTGAACTAATGTGTTCCTAACTTC 60.128 42.308 8.13 0.00 43.96 3.01
2690 3106 8.834749 ATGTGTTCCTAACTTCTTTAAGAGTC 57.165 34.615 0.00 0.00 36.50 3.36
2699 3115 5.850614 ACTTCTTTAAGAGTCGCCAAACTA 58.149 37.500 0.00 0.00 36.50 2.24
2836 3890 7.225931 TGTTATCAGTAACTTTGTGTTGACTCC 59.774 37.037 0.73 0.00 40.66 3.85
2879 3933 9.802039 ATTGGTCTAAAGTTGTCCAGTTTTATA 57.198 29.630 0.00 0.00 30.16 0.98
2984 4038 8.330302 GTTGAATTTGATCTTGGTTTTGTCAAG 58.670 33.333 0.00 0.00 41.99 3.02
3129 4183 5.990668 ACCATCCTTTGTCTATTCCACTAC 58.009 41.667 0.00 0.00 0.00 2.73
3130 4184 5.487488 ACCATCCTTTGTCTATTCCACTACA 59.513 40.000 0.00 0.00 0.00 2.74
3291 4346 0.737219 GCATGCATGAGGTTGAGACC 59.263 55.000 30.64 4.36 46.92 3.85
3469 4526 6.267471 GCCCCATCATCCTAATAAAAACATGA 59.733 38.462 0.00 0.00 0.00 3.07
3577 4764 6.766467 AGCTTTAGGATAAATGTTTCCTACCG 59.234 38.462 1.76 0.00 42.83 4.02
3607 4794 6.799512 AGTGTTTAATTATCAGCTCATTGCC 58.200 36.000 0.00 0.00 44.23 4.52
3697 4967 8.507249 GTGTGCTGGAATTCATAAATATAGACC 58.493 37.037 7.93 0.00 0.00 3.85
3724 4994 6.875972 ACTTATATAGGGCATCTTAGGTGG 57.124 41.667 0.00 0.00 0.00 4.61
3834 5108 7.946043 GTCAAATTGACATTTCAACTATGCAG 58.054 34.615 20.08 0.00 46.22 4.41
3835 5109 6.587226 TCAAATTGACATTTCAACTATGCAGC 59.413 34.615 0.00 0.00 44.66 5.25
3838 5112 5.239359 TGACATTTCAACTATGCAGCATC 57.761 39.130 12.38 0.00 0.00 3.91
3864 5138 8.555361 CGTCAAACATTGGTTGGATTTAAAAAT 58.445 29.630 14.24 0.00 39.13 1.82
3912 5186 7.202016 TGACATCAGTTTCTCAAAATGGTAC 57.798 36.000 0.00 0.00 37.11 3.34
4036 5310 6.658391 GCTGCTAAGGGATAAATTCTGATGAT 59.342 38.462 0.00 0.00 0.00 2.45
4086 5360 5.379732 TTCTTTTCCAACAGAAAACGTGT 57.620 34.783 0.00 0.00 47.00 4.49
4252 5526 3.890147 AGAGATACCCTTTAATCGCTCGT 59.110 43.478 0.00 0.00 27.53 4.18
4597 5871 3.965379 TCACAAGCAGACCGGTTAATA 57.035 42.857 9.42 0.00 32.89 0.98
5307 6581 0.912486 GTAAGGTGGCAGGAGATGGT 59.088 55.000 0.00 0.00 0.00 3.55
5311 6585 1.142748 GTGGCAGGAGATGGTCGAG 59.857 63.158 0.00 0.00 0.00 4.04
5427 6701 4.998051 TCTTGAAGGTTGCCTTTTCCTAT 58.002 39.130 1.64 0.00 44.82 2.57
5556 6830 4.681978 AACAGAGTCCGTGCCGCC 62.682 66.667 0.00 0.00 0.00 6.13
5838 7112 1.069204 TCCACAGACAGCAGTTCACTC 59.931 52.381 0.00 0.00 0.00 3.51
5850 7124 3.360168 GCAGTTCACTCGTTTACTCGTAC 59.640 47.826 0.00 0.00 0.00 3.67
5934 7208 1.012086 CAAGGCCACAGATCATCGTG 58.988 55.000 5.01 0.00 0.00 4.35
5964 7238 4.043310 AGGTCATTCATCCAGAAACCTCAA 59.957 41.667 0.00 0.00 41.50 3.02
5981 7255 4.327680 CCTCAACCAAGGTAGAAAGAAGG 58.672 47.826 0.00 0.00 0.00 3.46
5982 7256 4.202472 CCTCAACCAAGGTAGAAAGAAGGT 60.202 45.833 0.00 0.00 0.00 3.50
5983 7257 5.377478 CTCAACCAAGGTAGAAAGAAGGTT 58.623 41.667 0.00 0.00 38.33 3.50
5984 7258 5.438761 CAACCAAGGTAGAAAGAAGGTTG 57.561 43.478 0.00 0.00 45.59 3.77
5985 7259 4.100279 ACCAAGGTAGAAAGAAGGTTGG 57.900 45.455 0.00 0.00 39.13 3.77
5986 7260 3.720002 ACCAAGGTAGAAAGAAGGTTGGA 59.280 43.478 5.24 0.00 37.10 3.53
5987 7261 4.072839 CCAAGGTAGAAAGAAGGTTGGAC 58.927 47.826 0.00 0.00 35.93 4.02
5988 7262 4.445735 CCAAGGTAGAAAGAAGGTTGGACA 60.446 45.833 0.00 0.00 35.93 4.02
5989 7263 5.316987 CAAGGTAGAAAGAAGGTTGGACAT 58.683 41.667 0.00 0.00 0.00 3.06
6036 7310 4.024893 CGGATGATGGTGAAGAAATAACGG 60.025 45.833 0.00 0.00 0.00 4.44
6143 7420 2.582978 GGACGGGCTTGGAGGTAC 59.417 66.667 0.00 0.00 0.00 3.34
6241 7518 3.244911 CCTGTGGTGTCAAGGAATAAGGT 60.245 47.826 0.00 0.00 0.00 3.50
6414 7697 0.112218 TGGTGTGATGGAACCTTGGG 59.888 55.000 0.00 0.00 37.36 4.12
6432 7716 6.118852 CCTTGGGAAATTTTGAGTTTTTGGA 58.881 36.000 0.00 0.00 0.00 3.53
6454 7738 1.805254 GCAATGCGATGCAGTTCCT 59.195 52.632 8.51 0.00 43.65 3.36
6474 7759 3.365868 CCTTGGATCAATTTCGCGTTTCA 60.366 43.478 5.77 0.00 0.00 2.69
6475 7760 3.906014 TGGATCAATTTCGCGTTTCAA 57.094 38.095 5.77 0.00 0.00 2.69
6476 7761 4.230314 TGGATCAATTTCGCGTTTCAAA 57.770 36.364 5.77 0.00 0.00 2.69
6488 7773 3.599116 CGCGTTTCAAATGAACAGTTTGC 60.599 43.478 0.00 0.00 36.69 3.68
6509 7819 2.431419 CTGGTCTCTGATGATGCTCTGT 59.569 50.000 0.00 0.00 0.00 3.41
6512 7822 4.260170 GGTCTCTGATGATGCTCTGTTTT 58.740 43.478 0.00 0.00 0.00 2.43
6589 7900 4.023963 GCTCCGGTCTAAATATTTTCTGCC 60.024 45.833 5.91 3.81 0.00 4.85
6677 7988 1.962547 CGCGTTCGAAAAATCACACAG 59.037 47.619 0.00 0.00 38.10 3.66
6679 7990 2.964768 GCGTTCGAAAAATCACACAGTC 59.035 45.455 0.00 0.00 0.00 3.51
6685 7996 6.228273 TCGAAAAATCACACAGTCTGAATC 57.772 37.500 6.91 0.00 0.00 2.52
6689 8000 5.695851 AAATCACACAGTCTGAATCCAAC 57.304 39.130 6.91 0.00 0.00 3.77
6696 8007 2.932614 CAGTCTGAATCCAACGATCACC 59.067 50.000 0.00 0.00 0.00 4.02
6701 8012 2.159156 TGAATCCAACGATCACCCGTAG 60.159 50.000 0.00 0.00 42.54 3.51
6751 8063 4.775236 AGAAGCAAAATCTAGTAGGGCTG 58.225 43.478 0.00 0.00 0.00 4.85
6761 8073 5.693769 TCTAGTAGGGCTGCTGTAAAAAT 57.306 39.130 0.00 0.00 0.00 1.82
6765 8077 9.101325 TCTAGTAGGGCTGCTGTAAAAATATAT 57.899 33.333 0.00 0.00 0.00 0.86
6766 8078 9.726438 CTAGTAGGGCTGCTGTAAAAATATATT 57.274 33.333 0.00 0.00 0.00 1.28
6792 8104 9.764363 TTGATTCTATATGTGCACTTAACTAGG 57.236 33.333 19.41 6.46 0.00 3.02
6810 8125 3.134574 AGGTATCCAAGACGCAAAACA 57.865 42.857 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.810491 AGTGGCAAAAATCAAACACATGTC 59.190 37.500 0.00 0.00 0.00 3.06
1 2 4.768583 AGTGGCAAAAATCAAACACATGT 58.231 34.783 0.00 0.00 0.00 3.21
2 3 5.738118 AAGTGGCAAAAATCAAACACATG 57.262 34.783 0.00 0.00 0.00 3.21
3 4 8.344098 CAATAAAGTGGCAAAAATCAAACACAT 58.656 29.630 0.00 0.00 0.00 3.21
4 5 7.678218 GCAATAAAGTGGCAAAAATCAAACACA 60.678 33.333 0.00 0.00 0.00 3.72
5 6 6.632434 GCAATAAAGTGGCAAAAATCAAACAC 59.368 34.615 0.00 0.00 0.00 3.32
6 7 6.238593 GGCAATAAAGTGGCAAAAATCAAACA 60.239 34.615 0.00 0.00 43.33 2.83
7 8 6.142139 GGCAATAAAGTGGCAAAAATCAAAC 58.858 36.000 0.00 0.00 43.33 2.93
8 9 5.240403 GGGCAATAAAGTGGCAAAAATCAAA 59.760 36.000 6.32 0.00 45.56 2.69
9 10 4.759183 GGGCAATAAAGTGGCAAAAATCAA 59.241 37.500 6.32 0.00 45.56 2.57
10 11 4.322567 GGGCAATAAAGTGGCAAAAATCA 58.677 39.130 6.32 0.00 45.56 2.57
11 12 3.689161 GGGGCAATAAAGTGGCAAAAATC 59.311 43.478 6.32 0.00 45.56 2.17
12 13 3.330405 AGGGGCAATAAAGTGGCAAAAAT 59.670 39.130 6.32 0.00 45.56 1.82
13 14 2.708325 AGGGGCAATAAAGTGGCAAAAA 59.292 40.909 6.32 0.00 45.56 1.94
14 15 2.334023 AGGGGCAATAAAGTGGCAAAA 58.666 42.857 6.32 0.00 45.56 2.44
15 16 2.022718 AGGGGCAATAAAGTGGCAAA 57.977 45.000 6.32 0.00 45.56 3.68
16 17 2.909504 TAGGGGCAATAAAGTGGCAA 57.090 45.000 6.32 0.00 45.56 4.52
17 18 2.665165 CATAGGGGCAATAAAGTGGCA 58.335 47.619 6.32 0.00 45.56 4.92
18 19 1.963515 CCATAGGGGCAATAAAGTGGC 59.036 52.381 0.00 0.00 43.12 5.01
19 20 3.222603 GACCATAGGGGCAATAAAGTGG 58.777 50.000 0.00 0.00 44.16 4.00
29 30 1.064017 TGACAAATGGACCATAGGGGC 60.064 52.381 7.59 3.10 43.93 5.80
30 31 3.600448 ATGACAAATGGACCATAGGGG 57.400 47.619 7.59 0.37 44.81 4.79
31 32 5.307976 TCTCTATGACAAATGGACCATAGGG 59.692 44.000 7.59 0.00 39.97 3.53
32 33 6.226787 GTCTCTATGACAAATGGACCATAGG 58.773 44.000 7.59 5.58 44.73 2.57
74 75 0.960364 GGCTGAGAAATTGGACGCCA 60.960 55.000 0.00 0.00 36.16 5.69
75 76 0.960364 TGGCTGAGAAATTGGACGCC 60.960 55.000 0.00 0.00 36.64 5.68
76 77 0.169009 GTGGCTGAGAAATTGGACGC 59.831 55.000 0.00 0.00 0.00 5.19
77 78 1.197721 GTGTGGCTGAGAAATTGGACG 59.802 52.381 0.00 0.00 0.00 4.79
78 79 2.508526 AGTGTGGCTGAGAAATTGGAC 58.491 47.619 0.00 0.00 0.00 4.02
79 80 2.886523 CAAGTGTGGCTGAGAAATTGGA 59.113 45.455 0.00 0.00 0.00 3.53
80 81 2.624838 ACAAGTGTGGCTGAGAAATTGG 59.375 45.455 0.00 0.00 0.00 3.16
81 82 3.635331 CACAAGTGTGGCTGAGAAATTG 58.365 45.455 3.39 0.00 42.10 2.32
82 83 3.996150 CACAAGTGTGGCTGAGAAATT 57.004 42.857 3.39 0.00 42.10 1.82
94 95 0.756442 ATGCCAAGCCACACAAGTGT 60.756 50.000 0.00 0.00 44.39 3.55
95 96 1.068333 GTATGCCAAGCCACACAAGTG 60.068 52.381 0.00 0.00 45.47 3.16
96 97 1.202927 AGTATGCCAAGCCACACAAGT 60.203 47.619 0.00 0.00 0.00 3.16
97 98 1.538047 AGTATGCCAAGCCACACAAG 58.462 50.000 0.00 0.00 0.00 3.16
98 99 1.612950 CAAGTATGCCAAGCCACACAA 59.387 47.619 0.00 0.00 0.00 3.33
99 100 1.246649 CAAGTATGCCAAGCCACACA 58.753 50.000 0.00 0.00 0.00 3.72
100 101 1.068333 CACAAGTATGCCAAGCCACAC 60.068 52.381 0.00 0.00 0.00 3.82
101 102 1.246649 CACAAGTATGCCAAGCCACA 58.753 50.000 0.00 0.00 0.00 4.17
102 103 1.068333 CACACAAGTATGCCAAGCCAC 60.068 52.381 0.00 0.00 0.00 5.01
103 104 1.246649 CACACAAGTATGCCAAGCCA 58.753 50.000 0.00 0.00 0.00 4.75
104 105 1.068333 CACACACAAGTATGCCAAGCC 60.068 52.381 0.00 0.00 0.00 4.35
105 106 1.068333 CCACACACAAGTATGCCAAGC 60.068 52.381 0.00 0.00 0.00 4.01
106 107 1.068333 GCCACACACAAGTATGCCAAG 60.068 52.381 0.00 0.00 0.00 3.61
107 108 0.958091 GCCACACACAAGTATGCCAA 59.042 50.000 0.00 0.00 0.00 4.52
108 109 0.893270 GGCCACACACAAGTATGCCA 60.893 55.000 0.00 0.00 38.07 4.92
109 110 0.893270 TGGCCACACACAAGTATGCC 60.893 55.000 0.00 0.00 38.44 4.40
110 111 0.240945 GTGGCCACACACAAGTATGC 59.759 55.000 31.23 0.00 46.90 3.14
120 121 2.295909 TCAAGCTAAAATGTGGCCACAC 59.704 45.455 39.95 25.39 45.05 3.82
121 122 2.295909 GTCAAGCTAAAATGTGGCCACA 59.704 45.455 39.23 39.23 46.44 4.17
122 123 2.352715 GGTCAAGCTAAAATGTGGCCAC 60.353 50.000 29.67 29.67 35.75 5.01
123 124 1.892474 GGTCAAGCTAAAATGTGGCCA 59.108 47.619 0.00 0.00 35.75 5.36
124 125 1.892474 TGGTCAAGCTAAAATGTGGCC 59.108 47.619 0.00 0.00 36.25 5.36
125 126 2.295909 TGTGGTCAAGCTAAAATGTGGC 59.704 45.455 0.00 0.00 0.00 5.01
126 127 3.569701 AGTGTGGTCAAGCTAAAATGTGG 59.430 43.478 0.00 0.00 0.00 4.17
127 128 4.836125 AGTGTGGTCAAGCTAAAATGTG 57.164 40.909 0.00 0.00 0.00 3.21
128 129 5.621193 ACTAGTGTGGTCAAGCTAAAATGT 58.379 37.500 0.00 0.00 0.00 2.71
129 130 5.934625 AGACTAGTGTGGTCAAGCTAAAATG 59.065 40.000 0.00 0.00 36.29 2.32
130 131 6.115448 AGACTAGTGTGGTCAAGCTAAAAT 57.885 37.500 0.00 0.00 36.29 1.82
131 132 5.510861 GGAGACTAGTGTGGTCAAGCTAAAA 60.511 44.000 0.00 0.00 36.29 1.52
132 133 4.021368 GGAGACTAGTGTGGTCAAGCTAAA 60.021 45.833 0.00 0.00 36.29 1.85
133 134 3.510360 GGAGACTAGTGTGGTCAAGCTAA 59.490 47.826 0.00 0.00 36.29 3.09
134 135 3.090037 GGAGACTAGTGTGGTCAAGCTA 58.910 50.000 0.00 0.00 36.29 3.32
135 136 1.896465 GGAGACTAGTGTGGTCAAGCT 59.104 52.381 0.00 0.00 36.29 3.74
136 137 1.618837 TGGAGACTAGTGTGGTCAAGC 59.381 52.381 0.00 0.00 36.29 4.01
137 138 3.555168 GGTTGGAGACTAGTGTGGTCAAG 60.555 52.174 0.00 0.00 36.29 3.02
138 139 2.367567 GGTTGGAGACTAGTGTGGTCAA 59.632 50.000 0.00 0.00 36.29 3.18
139 140 1.968493 GGTTGGAGACTAGTGTGGTCA 59.032 52.381 0.00 0.00 36.29 4.02
140 141 1.968493 TGGTTGGAGACTAGTGTGGTC 59.032 52.381 0.00 0.00 0.00 4.02
141 142 2.097110 TGGTTGGAGACTAGTGTGGT 57.903 50.000 0.00 0.00 0.00 4.16
142 143 3.139077 GTTTGGTTGGAGACTAGTGTGG 58.861 50.000 0.00 0.00 0.00 4.17
143 144 3.804036 TGTTTGGTTGGAGACTAGTGTG 58.196 45.455 0.00 0.00 0.00 3.82
144 145 3.709653 TCTGTTTGGTTGGAGACTAGTGT 59.290 43.478 0.00 0.00 0.00 3.55
145 146 4.058817 GTCTGTTTGGTTGGAGACTAGTG 58.941 47.826 0.00 0.00 33.46 2.74
146 147 3.071167 GGTCTGTTTGGTTGGAGACTAGT 59.929 47.826 0.00 0.00 36.02 2.57
147 148 3.557264 GGGTCTGTTTGGTTGGAGACTAG 60.557 52.174 0.00 0.00 36.02 2.57
148 149 2.370849 GGGTCTGTTTGGTTGGAGACTA 59.629 50.000 0.00 0.00 36.02 2.59
149 150 1.143073 GGGTCTGTTTGGTTGGAGACT 59.857 52.381 0.00 0.00 36.02 3.24
150 151 1.605753 GGGTCTGTTTGGTTGGAGAC 58.394 55.000 0.00 0.00 35.15 3.36
151 152 0.476771 GGGGTCTGTTTGGTTGGAGA 59.523 55.000 0.00 0.00 0.00 3.71
152 153 0.478507 AGGGGTCTGTTTGGTTGGAG 59.521 55.000 0.00 0.00 0.00 3.86
153 154 1.822425 TAGGGGTCTGTTTGGTTGGA 58.178 50.000 0.00 0.00 0.00 3.53
154 155 2.668144 TTAGGGGTCTGTTTGGTTGG 57.332 50.000 0.00 0.00 0.00 3.77
155 156 4.832823 AGAAATTAGGGGTCTGTTTGGTTG 59.167 41.667 0.00 0.00 0.00 3.77
156 157 5.074746 AGAAATTAGGGGTCTGTTTGGTT 57.925 39.130 0.00 0.00 0.00 3.67
157 158 4.105697 TGAGAAATTAGGGGTCTGTTTGGT 59.894 41.667 0.00 0.00 0.00 3.67
158 159 4.459337 GTGAGAAATTAGGGGTCTGTTTGG 59.541 45.833 0.00 0.00 0.00 3.28
159 160 5.070001 TGTGAGAAATTAGGGGTCTGTTTG 58.930 41.667 0.00 0.00 0.00 2.93
160 161 5.319043 TGTGAGAAATTAGGGGTCTGTTT 57.681 39.130 0.00 0.00 0.00 2.83
161 162 4.993705 TGTGAGAAATTAGGGGTCTGTT 57.006 40.909 0.00 0.00 0.00 3.16
162 163 4.652822 GTTGTGAGAAATTAGGGGTCTGT 58.347 43.478 0.00 0.00 0.00 3.41
163 164 3.684788 CGTTGTGAGAAATTAGGGGTCTG 59.315 47.826 0.00 0.00 0.00 3.51
164 165 3.326880 ACGTTGTGAGAAATTAGGGGTCT 59.673 43.478 0.00 0.00 0.00 3.85
165 166 3.671716 ACGTTGTGAGAAATTAGGGGTC 58.328 45.455 0.00 0.00 0.00 4.46
166 167 3.782656 ACGTTGTGAGAAATTAGGGGT 57.217 42.857 0.00 0.00 0.00 4.95
167 168 4.571919 TGTACGTTGTGAGAAATTAGGGG 58.428 43.478 0.00 0.00 0.00 4.79
168 169 5.467399 TGTTGTACGTTGTGAGAAATTAGGG 59.533 40.000 0.00 0.00 0.00 3.53
169 170 6.533819 TGTTGTACGTTGTGAGAAATTAGG 57.466 37.500 0.00 0.00 0.00 2.69
170 171 7.792925 TGATGTTGTACGTTGTGAGAAATTAG 58.207 34.615 0.00 0.00 0.00 1.73
171 172 7.716768 TGATGTTGTACGTTGTGAGAAATTA 57.283 32.000 0.00 0.00 0.00 1.40
172 173 6.612247 TGATGTTGTACGTTGTGAGAAATT 57.388 33.333 0.00 0.00 0.00 1.82
173 174 6.348458 CCATGATGTTGTACGTTGTGAGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
174 175 5.049749 CCATGATGTTGTACGTTGTGAGAAA 60.050 40.000 0.00 0.00 0.00 2.52
175 176 4.450757 CCATGATGTTGTACGTTGTGAGAA 59.549 41.667 0.00 0.00 0.00 2.87
176 177 3.993736 CCATGATGTTGTACGTTGTGAGA 59.006 43.478 0.00 0.00 0.00 3.27
177 178 3.125146 CCCATGATGTTGTACGTTGTGAG 59.875 47.826 0.00 0.00 0.00 3.51
178 179 3.070748 CCCATGATGTTGTACGTTGTGA 58.929 45.455 0.00 0.00 0.00 3.58
179 180 2.414029 GCCCATGATGTTGTACGTTGTG 60.414 50.000 0.00 0.00 0.00 3.33
180 181 1.810151 GCCCATGATGTTGTACGTTGT 59.190 47.619 0.00 0.00 0.00 3.32
181 182 1.809547 TGCCCATGATGTTGTACGTTG 59.190 47.619 0.00 0.00 0.00 4.10
182 183 2.192664 TGCCCATGATGTTGTACGTT 57.807 45.000 0.00 0.00 0.00 3.99
183 184 2.418368 ATGCCCATGATGTTGTACGT 57.582 45.000 0.00 0.00 0.00 3.57
184 185 3.436704 GGATATGCCCATGATGTTGTACG 59.563 47.826 0.00 0.00 0.00 3.67
185 186 4.655963 AGGATATGCCCATGATGTTGTAC 58.344 43.478 0.00 0.00 37.37 2.90
195 196 4.549668 ACATTTTGTGAGGATATGCCCAT 58.450 39.130 0.00 0.00 37.37 4.00
225 226 3.282885 TGTATTTTGCGATACATGCCCA 58.717 40.909 0.00 0.00 37.53 5.36
237 238 6.476706 GTGCTAAGGATGGAATTGTATTTTGC 59.523 38.462 0.00 0.00 0.00 3.68
263 264 8.374327 ACAACCACATACTACTGAAACTAAAC 57.626 34.615 0.00 0.00 0.00 2.01
275 277 7.041644 GCAAAACAGTTCTACAACCACATACTA 60.042 37.037 0.00 0.00 32.22 1.82
293 295 7.935338 ACAAGATAAGTTCATTGCAAAACAG 57.065 32.000 14.70 1.77 0.00 3.16
299 301 6.607689 CGGTTTACAAGATAAGTTCATTGCA 58.392 36.000 0.00 0.00 0.00 4.08
300 302 5.511729 GCGGTTTACAAGATAAGTTCATTGC 59.488 40.000 0.00 0.00 0.00 3.56
314 316 0.466555 AACCAGCCAGCGGTTTACAA 60.467 50.000 11.42 0.00 44.46 2.41
323 325 0.823356 TCCTTGTCAAACCAGCCAGC 60.823 55.000 0.00 0.00 0.00 4.85
343 346 8.372459 ACTTACTTATGGTGAACTGTGACAATA 58.628 33.333 0.00 0.00 0.00 1.90
346 349 6.169557 ACTTACTTATGGTGAACTGTGACA 57.830 37.500 0.00 0.00 0.00 3.58
350 353 7.974501 CGATCTTACTTACTTATGGTGAACTGT 59.025 37.037 0.00 0.00 0.00 3.55
374 380 6.092955 ACTGGATTTGTAGACTTTGTACGA 57.907 37.500 0.00 0.00 0.00 3.43
376 382 6.369065 CAGGACTGGATTTGTAGACTTTGTAC 59.631 42.308 0.00 0.00 0.00 2.90
392 398 2.241281 TACCGGAAATCAGGACTGGA 57.759 50.000 9.46 0.00 35.12 3.86
393 399 2.434336 TCATACCGGAAATCAGGACTGG 59.566 50.000 9.46 0.00 35.12 4.00
414 420 8.846211 CCTGTATTGGTATATTTTTGACCGAAT 58.154 33.333 0.00 0.00 35.91 3.34
436 442 8.919145 TCAATTTCAAAGTTGTTATAACCCTGT 58.081 29.630 13.01 1.66 0.00 4.00
501 507 1.452368 ACCCGTGGTGTATGCACAA 59.548 52.632 16.11 0.72 46.95 3.33
568 574 1.713005 CCATCCCATCCCACCCAGAG 61.713 65.000 0.00 0.00 0.00 3.35
694 717 1.347320 GAGAAACGAGAAATCGGCGT 58.653 50.000 6.85 0.00 40.35 5.68
699 722 3.053831 TGGTGGGAGAAACGAGAAATC 57.946 47.619 0.00 0.00 0.00 2.17
745 779 2.202987 CGCACAGGAGGAGGATGC 60.203 66.667 0.00 0.00 0.00 3.91
778 823 1.181786 GAGAGACAGGGACAGACAGG 58.818 60.000 0.00 0.00 0.00 4.00
926 972 1.601171 CTCCCTCTGACCTGCTTGG 59.399 63.158 0.00 0.00 42.93 3.61
1549 1633 8.877864 AGACAAAACATGATACTCCCAATTAA 57.122 30.769 0.00 0.00 0.00 1.40
1621 1706 2.508526 GACAGGAGGAAACAGCATTGT 58.491 47.619 0.00 0.00 39.87 2.71
1655 1740 0.036732 TTGTGAGAATCTGCGGGCTT 59.963 50.000 0.00 0.00 34.92 4.35
1678 1763 6.698008 TCATGAAATATGCGAATGGAACTT 57.302 33.333 0.00 0.00 0.00 2.66
1683 1768 5.571741 GCAGAATCATGAAATATGCGAATGG 59.428 40.000 13.51 0.00 0.00 3.16
1688 1773 4.492791 TGGCAGAATCATGAAATATGCG 57.507 40.909 19.12 0.61 33.08 4.73
1697 1782 6.461110 AAGGAATAGTTTGGCAGAATCATG 57.539 37.500 0.00 0.00 0.00 3.07
1704 1789 6.024552 TGCTAAAAAGGAATAGTTTGGCAG 57.975 37.500 2.78 0.00 41.79 4.85
1716 1801 6.498538 TCCCTTGGAATAATGCTAAAAAGGA 58.501 36.000 0.00 0.00 35.94 3.36
1725 1811 4.590850 GGATGTTCCCTTGGAATAATGC 57.409 45.455 0.00 0.00 44.04 3.56
1742 1828 4.515944 ACATGTGCAAACAAAATTGGGATG 59.484 37.500 0.00 0.00 0.00 3.51
1749 1835 5.816258 TGTCAATGACATGTGCAAACAAAAT 59.184 32.000 12.63 0.00 37.67 1.82
1797 1883 7.265599 TGGAAAATAAGGATGGTGTAGAAGA 57.734 36.000 0.00 0.00 0.00 2.87
1798 1884 9.277783 CTATGGAAAATAAGGATGGTGTAGAAG 57.722 37.037 0.00 0.00 0.00 2.85
1799 1885 7.719633 GCTATGGAAAATAAGGATGGTGTAGAA 59.280 37.037 0.00 0.00 0.00 2.10
1800 1886 7.072454 AGCTATGGAAAATAAGGATGGTGTAGA 59.928 37.037 0.00 0.00 0.00 2.59
1801 1887 7.227156 AGCTATGGAAAATAAGGATGGTGTAG 58.773 38.462 0.00 0.00 0.00 2.74
1802 1888 7.149202 AGCTATGGAAAATAAGGATGGTGTA 57.851 36.000 0.00 0.00 0.00 2.90
1803 1889 6.018433 AGCTATGGAAAATAAGGATGGTGT 57.982 37.500 0.00 0.00 0.00 4.16
1804 1890 7.227156 ACTAGCTATGGAAAATAAGGATGGTG 58.773 38.462 0.00 0.00 0.00 4.17
1805 1891 7.394144 ACTAGCTATGGAAAATAAGGATGGT 57.606 36.000 0.00 0.00 0.00 3.55
1806 1892 6.591834 CGACTAGCTATGGAAAATAAGGATGG 59.408 42.308 0.00 0.00 0.00 3.51
1807 1893 6.091441 GCGACTAGCTATGGAAAATAAGGATG 59.909 42.308 0.00 0.00 44.04 3.51
1808 1894 6.166982 GCGACTAGCTATGGAAAATAAGGAT 58.833 40.000 0.00 0.00 44.04 3.24
1809 1895 5.539048 GCGACTAGCTATGGAAAATAAGGA 58.461 41.667 0.00 0.00 44.04 3.36
1810 1896 5.847670 GCGACTAGCTATGGAAAATAAGG 57.152 43.478 0.00 0.00 44.04 2.69
1825 1911 4.632251 TGTACTGAAGAAGAGAGCGACTAG 59.368 45.833 0.00 0.00 0.00 2.57
1826 1912 4.576879 TGTACTGAAGAAGAGAGCGACTA 58.423 43.478 0.00 0.00 0.00 2.59
1827 1913 3.413327 TGTACTGAAGAAGAGAGCGACT 58.587 45.455 0.00 0.00 0.00 4.18
1828 1914 3.833545 TGTACTGAAGAAGAGAGCGAC 57.166 47.619 0.00 0.00 0.00 5.19
1829 1915 6.428465 CCTATATGTACTGAAGAAGAGAGCGA 59.572 42.308 0.00 0.00 0.00 4.93
1830 1916 6.205853 ACCTATATGTACTGAAGAAGAGAGCG 59.794 42.308 0.00 0.00 0.00 5.03
1831 1917 7.519032 ACCTATATGTACTGAAGAAGAGAGC 57.481 40.000 0.00 0.00 0.00 4.09
1907 1993 7.871853 ACGCACATAAAACTAAAAACTGATCT 58.128 30.769 0.00 0.00 0.00 2.75
1914 2000 7.390996 TGGAGGATACGCACATAAAACTAAAAA 59.609 33.333 0.00 0.00 46.39 1.94
1925 2011 0.179045 GCCTTGGAGGATACGCACAT 60.179 55.000 0.00 0.00 46.39 3.21
1931 2017 1.017387 CAAAGCGCCTTGGAGGATAC 58.983 55.000 10.99 0.00 37.67 2.24
2071 2161 4.870636 ACCATGTGGATATTGTTGACCAT 58.129 39.130 5.96 0.00 38.94 3.55
2115 2205 4.030195 CGCCTTTAGCAAATTAAGAAACGC 59.970 41.667 0.00 0.00 44.04 4.84
2168 2259 3.056313 GCCATTCAGCGTTCCTGGC 62.056 63.158 4.93 4.93 44.91 4.85
2345 2438 8.236084 ACTACTAGTAAACAATAAAGTGTGCG 57.764 34.615 3.76 0.00 0.00 5.34
2400 2509 0.881118 CGGTCAATTCCCCACACTTG 59.119 55.000 0.00 0.00 0.00 3.16
2409 2518 1.068541 GTGAAGTTGCCGGTCAATTCC 60.069 52.381 13.23 0.00 36.99 3.01
2502 2613 4.358851 CAAGCAAAATGAGAACCGTCAAA 58.641 39.130 0.00 0.00 0.00 2.69
2669 3085 5.348179 GGCGACTCTTAAAGAAGTTAGGAAC 59.652 44.000 0.00 0.00 34.03 3.62
2680 3096 6.237861 GCTGTATAGTTTGGCGACTCTTAAAG 60.238 42.308 0.00 0.00 0.00 1.85
2690 3106 2.309528 TCCAGCTGTATAGTTTGGCG 57.690 50.000 13.81 0.00 33.49 5.69
2741 3788 0.453793 CTGCCGACACCACAAAAACA 59.546 50.000 0.00 0.00 0.00 2.83
2819 3873 4.126208 TGTCGGAGTCAACACAAAGTTA 57.874 40.909 0.00 0.00 38.74 2.24
2836 3890 4.258543 ACCAATACCTACCACAAATGTCG 58.741 43.478 0.00 0.00 0.00 4.35
2900 3954 5.102953 AGCACTGCTGTATAGATTCCAAA 57.897 39.130 1.67 0.00 37.57 3.28
2984 4038 8.521170 AACAATTAGGGACTTATTTTAGGAGC 57.479 34.615 0.00 0.00 35.34 4.70
3166 4220 9.273016 CAATTTATAGTTATCCCACTGTACCAG 57.727 37.037 0.00 0.00 37.52 4.00
3174 4228 6.204108 CCGTGTCCAATTTATAGTTATCCCAC 59.796 42.308 0.00 0.00 0.00 4.61
3183 4238 5.293569 GGTCTCAACCGTGTCCAATTTATAG 59.706 44.000 0.00 0.00 35.36 1.31
3291 4346 7.496920 TCAATCAACTTGTAGATTCATAGCTGG 59.503 37.037 0.00 0.00 36.20 4.85
3498 4555 1.364626 GGTTCAGCATGCAGTCGGAG 61.365 60.000 21.98 0.41 34.76 4.63
3697 4967 5.812642 CCTAAGATGCCCTATATAAGTTGCG 59.187 44.000 0.00 0.00 0.00 4.85
3724 4994 1.032014 TCAAAAGCCAGCAAGACACC 58.968 50.000 0.00 0.00 0.00 4.16
3834 5108 2.030363 TCCAACCAATGTTTGACGATGC 60.030 45.455 0.00 0.00 30.42 3.91
3835 5109 3.913548 TCCAACCAATGTTTGACGATG 57.086 42.857 0.00 0.00 30.42 3.84
3838 5112 7.470289 TTTTAAATCCAACCAATGTTTGACG 57.530 32.000 0.00 0.00 29.84 4.35
3864 5138 6.723298 AAGTTACAAAATCAACACCATCCA 57.277 33.333 0.00 0.00 0.00 3.41
3912 5186 8.682128 ACATTTATAGCAAATACACCAAAACG 57.318 30.769 0.00 0.00 0.00 3.60
3990 5264 6.035975 GCAGCAGTTAAACAAAAGAAACACAT 59.964 34.615 0.00 0.00 0.00 3.21
4086 5360 6.448207 TTCATGGAATCAAAACATATCGCA 57.552 33.333 0.00 0.00 0.00 5.10
4252 5526 6.785337 TCCACGAGGAACAATAGAAGATAA 57.215 37.500 0.00 0.00 42.23 1.75
4537 5811 0.552848 GGGGCCTTCAGATGGATCAA 59.447 55.000 0.84 0.00 0.00 2.57
5307 6581 4.395854 CCAACATCAATTGAACCATCTCGA 59.604 41.667 13.09 0.00 0.00 4.04
5311 6585 5.389859 TGTCCAACATCAATTGAACCATC 57.610 39.130 13.09 1.48 0.00 3.51
5427 6701 4.023980 ACTCATTTGTCACCGGATCTCTA 58.976 43.478 9.46 0.00 0.00 2.43
5556 6830 2.547211 CCTTGCAGCCTCAATAGAATCG 59.453 50.000 0.00 0.00 0.00 3.34
5583 6857 2.029470 AGAAAGAACACCTCTCTCAGCG 60.029 50.000 0.00 0.00 31.02 5.18
5838 7112 3.122297 TGGTGTTTGGTACGAGTAAACG 58.878 45.455 0.00 0.00 37.17 3.60
5934 7208 1.017387 GGATGAATGACCTTGTCGGC 58.983 55.000 0.00 0.00 34.95 5.54
5964 7238 3.720002 TCCAACCTTCTTTCTACCTTGGT 59.280 43.478 0.00 0.00 0.00 3.67
5976 7250 3.117738 GGGATCATGATGTCCAACCTTCT 60.118 47.826 14.30 0.00 36.19 2.85
5978 7252 2.421952 CGGGATCATGATGTCCAACCTT 60.422 50.000 14.30 0.00 36.19 3.50
5981 7255 1.942657 CACGGGATCATGATGTCCAAC 59.057 52.381 14.30 0.00 36.19 3.77
5982 7256 1.836802 TCACGGGATCATGATGTCCAA 59.163 47.619 14.30 0.87 36.19 3.53
5983 7257 1.494960 TCACGGGATCATGATGTCCA 58.505 50.000 14.30 0.00 36.19 4.02
5984 7258 2.487934 CTTCACGGGATCATGATGTCC 58.512 52.381 14.30 10.02 0.00 4.02
5985 7259 1.869767 GCTTCACGGGATCATGATGTC 59.130 52.381 14.30 5.02 0.00 3.06
5986 7260 1.210234 TGCTTCACGGGATCATGATGT 59.790 47.619 14.30 1.71 0.00 3.06
5987 7261 1.957668 TGCTTCACGGGATCATGATG 58.042 50.000 14.30 0.99 0.00 3.07
5988 7262 2.569059 CTTGCTTCACGGGATCATGAT 58.431 47.619 8.25 8.25 0.00 2.45
5989 7263 2.013563 GCTTGCTTCACGGGATCATGA 61.014 52.381 0.00 0.00 0.00 3.07
6067 7341 7.610865 ACTCAAACCAGAAAAACAAAAGATGA 58.389 30.769 0.00 0.00 0.00 2.92
6143 7420 3.593442 ATACCACCCCCACAACATATG 57.407 47.619 0.00 0.00 0.00 1.78
6213 7490 2.567169 TCCTTGACACCACAGGAGTATG 59.433 50.000 0.00 0.00 0.00 2.39
6241 7518 3.187112 CCCCTCCTACTTACTTCCCAAA 58.813 50.000 0.00 0.00 0.00 3.28
6297 7576 0.690077 CCTACCCTAGACCACACCCC 60.690 65.000 0.00 0.00 0.00 4.95
6383 7662 0.673985 TCACACCAGACGAGACCAAG 59.326 55.000 0.00 0.00 0.00 3.61
6414 7697 5.584251 TGCACCTCCAAAAACTCAAAATTTC 59.416 36.000 0.00 0.00 0.00 2.17
6454 7738 3.906014 TGAAACGCGAAATTGATCCAA 57.094 38.095 15.93 0.00 0.00 3.53
6474 7759 4.037208 CAGAGACCAGCAAACTGTTCATTT 59.963 41.667 0.00 0.00 42.81 2.32
6475 7760 3.567164 CAGAGACCAGCAAACTGTTCATT 59.433 43.478 0.00 0.00 42.81 2.57
6476 7761 3.144506 CAGAGACCAGCAAACTGTTCAT 58.855 45.455 0.00 0.00 42.81 2.57
6488 7773 2.431419 ACAGAGCATCATCAGAGACCAG 59.569 50.000 0.00 0.00 37.82 4.00
6528 7838 1.134280 ACCAGCAGATAAGCTTGCGAT 60.134 47.619 9.86 0.00 43.70 4.58
6589 7900 4.742201 CGTGCCCCAGTCGTCCAG 62.742 72.222 0.00 0.00 0.00 3.86
6677 7988 2.280628 GGGTGATCGTTGGATTCAGAC 58.719 52.381 0.00 0.00 31.51 3.51
6679 7990 1.290203 CGGGTGATCGTTGGATTCAG 58.710 55.000 0.00 0.00 31.51 3.02
6685 7996 1.470979 CCTTCTACGGGTGATCGTTGG 60.471 57.143 0.00 0.00 43.59 3.77
6689 8000 1.067582 GGCCTTCTACGGGTGATCG 59.932 63.158 0.00 0.00 0.00 3.69
6696 8007 5.425630 AGTATTTGTTTAGGCCTTCTACGG 58.574 41.667 12.58 0.00 0.00 4.02
6766 8078 9.764363 CCTAGTTAAGTGCACATATAGAATCAA 57.236 33.333 21.04 0.00 0.00 2.57
6792 8104 4.439776 GTGTTTGTTTTGCGTCTTGGATAC 59.560 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.