Multiple sequence alignment - TraesCS6D01G207200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G207200 chr6D 100.000 2933 0 0 833 3765 292723943 292721011 0.000000e+00 5417.0
1 TraesCS6D01G207200 chr6D 100.000 619 0 0 1 619 292724775 292724157 0.000000e+00 1144.0
2 TraesCS6D01G207200 chr6D 97.959 49 1 0 3374 3422 292721353 292721305 6.700000e-13 86.1
3 TraesCS6D01G207200 chr6D 97.959 49 1 0 3423 3471 292721402 292721354 6.700000e-13 86.1
4 TraesCS6D01G207200 chr6B 91.839 1544 73 22 1451 2962 457174436 457172914 0.000000e+00 2104.0
5 TraesCS6D01G207200 chr6B 91.579 570 25 13 876 1442 457175037 457174488 0.000000e+00 765.0
6 TraesCS6D01G207200 chr6B 94.553 257 14 0 1676 1932 483679382 483679126 7.580000e-107 398.0
7 TraesCS6D01G207200 chr6B 94.208 259 15 0 1674 1932 483730782 483730524 2.730000e-106 396.0
8 TraesCS6D01G207200 chr6B 86.577 149 20 0 3267 3415 14876818 14876670 8.370000e-37 165.0
9 TraesCS6D01G207200 chr7B 87.784 835 70 12 1100 1932 540636508 540635704 0.000000e+00 948.0
10 TraesCS6D01G207200 chr7B 93.822 259 16 0 1674 1932 374353476 374353734 1.270000e-104 390.0
11 TraesCS6D01G207200 chr2D 90.049 613 54 5 1 612 536206506 536207112 0.000000e+00 787.0
12 TraesCS6D01G207200 chr2D 91.270 252 20 2 3421 3672 196131992 196132241 3.600000e-90 342.0
13 TraesCS6D01G207200 chr4A 89.643 560 46 9 1 551 621134009 621133453 0.000000e+00 702.0
14 TraesCS6D01G207200 chr4A 89.624 559 45 11 1 550 531256763 531257317 0.000000e+00 699.0
15 TraesCS6D01G207200 chr4A 85.430 151 20 2 3266 3415 648138779 648138928 5.040000e-34 156.0
16 TraesCS6D01G207200 chr4A 85.430 151 21 1 3267 3416 728323990 728323840 5.040000e-34 156.0
17 TraesCS6D01G207200 chr5D 87.279 621 61 10 1 610 478462566 478461953 0.000000e+00 693.0
18 TraesCS6D01G207200 chr5D 84.615 130 19 1 491 619 237577852 237577723 1.100000e-25 128.0
19 TraesCS6D01G207200 chr2A 89.305 561 47 10 1 551 532211516 532212073 0.000000e+00 691.0
20 TraesCS6D01G207200 chr3A 86.817 622 68 11 1 612 19502571 19503188 0.000000e+00 682.0
21 TraesCS6D01G207200 chr1A 86.634 621 68 12 2 612 521247083 521246468 0.000000e+00 673.0
22 TraesCS6D01G207200 chr1A 88.592 561 51 9 1 551 208879530 208878973 0.000000e+00 669.0
23 TraesCS6D01G207200 chr6A 84.637 703 63 21 1548 2215 429393175 429393867 0.000000e+00 658.0
24 TraesCS6D01G207200 chr6A 87.348 577 49 11 873 1441 429392507 429393067 1.140000e-179 640.0
25 TraesCS6D01G207200 chr6A 93.303 433 19 5 2280 2703 429393866 429394297 6.860000e-177 630.0
26 TraesCS6D01G207200 chr6A 88.983 236 14 8 2782 3013 429394296 429394523 7.960000e-72 281.0
27 TraesCS6D01G207200 chr5A 85.417 624 74 13 1 612 6302994 6302376 1.910000e-177 632.0
28 TraesCS6D01G207200 chr3B 94.595 259 14 0 1674 1932 286475578 286475836 5.860000e-108 401.0
29 TraesCS6D01G207200 chr3B 94.422 251 14 0 1682 1932 205169937 205169687 1.640000e-103 387.0
30 TraesCS6D01G207200 chr3B 92.969 256 18 0 1677 1932 205834453 205834198 1.280000e-99 374.0
31 TraesCS6D01G207200 chr5B 93.822 259 16 0 1674 1932 653691037 653690779 1.270000e-104 390.0
32 TraesCS6D01G207200 chr7D 92.279 272 13 1 3423 3694 183227860 183228123 2.740000e-101 379.0
33 TraesCS6D01G207200 chr7D 98.611 72 1 0 3694 3765 183230698 183230769 1.100000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G207200 chr6D 292721011 292724775 3764 True 1683.30 5417 98.97950 1 3765 4 chr6D.!!$R1 3764
1 TraesCS6D01G207200 chr6B 457172914 457175037 2123 True 1434.50 2104 91.70900 876 2962 2 chr6B.!!$R4 2086
2 TraesCS6D01G207200 chr7B 540635704 540636508 804 True 948.00 948 87.78400 1100 1932 1 chr7B.!!$R1 832
3 TraesCS6D01G207200 chr2D 536206506 536207112 606 False 787.00 787 90.04900 1 612 1 chr2D.!!$F2 611
4 TraesCS6D01G207200 chr4A 621133453 621134009 556 True 702.00 702 89.64300 1 551 1 chr4A.!!$R1 550
5 TraesCS6D01G207200 chr4A 531256763 531257317 554 False 699.00 699 89.62400 1 550 1 chr4A.!!$F1 549
6 TraesCS6D01G207200 chr5D 478461953 478462566 613 True 693.00 693 87.27900 1 610 1 chr5D.!!$R2 609
7 TraesCS6D01G207200 chr2A 532211516 532212073 557 False 691.00 691 89.30500 1 551 1 chr2A.!!$F1 550
8 TraesCS6D01G207200 chr3A 19502571 19503188 617 False 682.00 682 86.81700 1 612 1 chr3A.!!$F1 611
9 TraesCS6D01G207200 chr1A 521246468 521247083 615 True 673.00 673 86.63400 2 612 1 chr1A.!!$R2 610
10 TraesCS6D01G207200 chr1A 208878973 208879530 557 True 669.00 669 88.59200 1 551 1 chr1A.!!$R1 550
11 TraesCS6D01G207200 chr6A 429392507 429394523 2016 False 552.25 658 88.56775 873 3013 4 chr6A.!!$F1 2140
12 TraesCS6D01G207200 chr5A 6302376 6302994 618 True 632.00 632 85.41700 1 612 1 chr5A.!!$R1 611
13 TraesCS6D01G207200 chr7D 183227860 183230769 2909 False 253.50 379 95.44500 3423 3765 2 chr7D.!!$F1 342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 971 0.321298 CCGGTCCCACTTACCAGTTG 60.321 60.0 0.0 0.0 36.78 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2902 3035 0.889186 TTGGAGCAAAGAAGACGGGC 60.889 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.567971 CAAGCCCAATTTGCTATTGTGAA 58.432 39.130 10.03 0.00 38.34 3.18
84 85 4.212716 AGATGCTTTGGTACATCATGCAT 58.787 39.130 10.73 10.73 44.16 3.96
174 175 1.480954 GAGCTCTTGGAACATCCCGTA 59.519 52.381 6.43 0.00 39.30 4.02
231 232 4.348863 AGTTGCCTCCTATCATGTCATC 57.651 45.455 0.00 0.00 0.00 2.92
268 269 8.900781 CAACACATGATGATCTTTAGAAGGATT 58.099 33.333 0.00 0.00 0.00 3.01
288 289 0.842030 TCATTGAGGAGTGGTGGGCT 60.842 55.000 0.00 0.00 0.00 5.19
297 298 2.283821 TGGTGGGCTTGGAATGGC 60.284 61.111 0.00 0.00 35.70 4.40
322 323 5.618418 CGACAAAGAGCATCATGATTTGTGT 60.618 40.000 22.63 12.98 42.44 3.72
324 325 3.777465 AGAGCATCATGATTTGTGTGC 57.223 42.857 5.16 7.06 37.82 4.57
326 327 3.762288 AGAGCATCATGATTTGTGTGCTT 59.238 39.130 17.77 7.73 43.40 3.91
333 334 6.572167 TCATGATTTGTGTGCTTGATGTTA 57.428 33.333 0.00 0.00 0.00 2.41
463 480 5.486526 TCTTTTTGCTTGTGTTTGGAATGT 58.513 33.333 0.00 0.00 0.00 2.71
467 484 7.938563 TTTTGCTTGTGTTTGGAATGTATAC 57.061 32.000 0.00 0.00 0.00 1.47
480 497 4.143073 GGAATGTATACGTTGTTTGTGCGA 60.143 41.667 15.04 0.00 0.00 5.10
481 498 4.994220 ATGTATACGTTGTTTGTGCGAA 57.006 36.364 0.00 0.00 0.00 4.70
487 506 1.528198 CGTTGTTTGTGCGAAAGTCGT 60.528 47.619 0.00 0.00 42.81 4.34
562 581 3.545481 GCGATGGACACGCGACAG 61.545 66.667 15.93 4.52 46.05 3.51
567 586 0.885879 ATGGACACGCGACAGAGTAA 59.114 50.000 15.93 0.00 0.00 2.24
579 598 4.664891 GCGACAGAGTAATTTTTAACGCGT 60.665 41.667 5.58 5.58 33.84 6.01
582 601 4.751098 ACAGAGTAATTTTTAACGCGTGGA 59.249 37.500 14.98 0.00 0.00 4.02
584 603 4.992951 AGAGTAATTTTTAACGCGTGGAGT 59.007 37.500 14.98 0.00 0.00 3.85
592 611 2.279851 CGCGTGGAGTGTTGGACA 60.280 61.111 0.00 0.00 0.00 4.02
602 621 1.064758 AGTGTTGGACAGCTGTTGGAA 60.065 47.619 22.65 11.18 0.00 3.53
612 631 4.338879 ACAGCTGTTGGAAATGCTCTAAT 58.661 39.130 15.25 0.00 36.59 1.73
613 632 5.500234 ACAGCTGTTGGAAATGCTCTAATA 58.500 37.500 15.25 0.00 36.59 0.98
614 633 5.945784 ACAGCTGTTGGAAATGCTCTAATAA 59.054 36.000 15.25 0.00 36.59 1.40
615 634 6.434028 ACAGCTGTTGGAAATGCTCTAATAAA 59.566 34.615 15.25 0.00 36.59 1.40
616 635 7.123247 ACAGCTGTTGGAAATGCTCTAATAAAT 59.877 33.333 15.25 0.00 36.59 1.40
617 636 8.623903 CAGCTGTTGGAAATGCTCTAATAAATA 58.376 33.333 5.25 0.00 36.59 1.40
618 637 8.624776 AGCTGTTGGAAATGCTCTAATAAATAC 58.375 33.333 0.00 0.00 34.30 1.89
855 874 6.642707 GTCATGTAGTAGTAGCTTCAGGAT 57.357 41.667 0.00 0.00 31.49 3.24
856 875 7.045126 GTCATGTAGTAGTAGCTTCAGGATT 57.955 40.000 0.00 0.00 31.49 3.01
857 876 6.920758 GTCATGTAGTAGTAGCTTCAGGATTG 59.079 42.308 0.00 0.00 31.49 2.67
858 877 6.607600 TCATGTAGTAGTAGCTTCAGGATTGT 59.392 38.462 0.00 0.00 0.00 2.71
859 878 6.452494 TGTAGTAGTAGCTTCAGGATTGTC 57.548 41.667 0.00 0.00 0.00 3.18
860 879 6.188407 TGTAGTAGTAGCTTCAGGATTGTCT 58.812 40.000 0.00 0.00 0.00 3.41
861 880 5.845391 AGTAGTAGCTTCAGGATTGTCTC 57.155 43.478 0.00 0.00 0.00 3.36
862 881 5.265191 AGTAGTAGCTTCAGGATTGTCTCA 58.735 41.667 0.00 0.00 0.00 3.27
863 882 4.734398 AGTAGCTTCAGGATTGTCTCAG 57.266 45.455 0.00 0.00 0.00 3.35
864 883 4.348486 AGTAGCTTCAGGATTGTCTCAGA 58.652 43.478 0.00 0.00 0.00 3.27
865 884 3.891422 AGCTTCAGGATTGTCTCAGAG 57.109 47.619 0.00 0.00 0.00 3.35
866 885 3.439154 AGCTTCAGGATTGTCTCAGAGA 58.561 45.455 0.00 0.00 0.00 3.10
867 886 3.837146 AGCTTCAGGATTGTCTCAGAGAA 59.163 43.478 0.20 0.00 0.00 2.87
868 887 4.285517 AGCTTCAGGATTGTCTCAGAGAAA 59.714 41.667 0.20 0.00 0.00 2.52
869 888 4.999950 GCTTCAGGATTGTCTCAGAGAAAA 59.000 41.667 5.44 5.44 0.00 2.29
870 889 5.471456 GCTTCAGGATTGTCTCAGAGAAAAA 59.529 40.000 7.15 3.41 0.00 1.94
921 940 3.478780 TGGTCCTACCACACCAGC 58.521 61.111 0.00 0.00 44.79 4.85
934 953 0.967380 CACCAGCACCCCTCAATTCC 60.967 60.000 0.00 0.00 0.00 3.01
952 971 0.321298 CCGGTCCCACTTACCAGTTG 60.321 60.000 0.00 0.00 36.78 3.16
961 981 3.573967 CCACTTACCAGTTGCAATCCTTT 59.426 43.478 0.59 0.00 0.00 3.11
967 987 2.232208 CCAGTTGCAATCCTTTTCCTCC 59.768 50.000 0.59 0.00 0.00 4.30
1002 1023 2.351276 CCACAAACCCTAGCCGCT 59.649 61.111 0.00 0.00 0.00 5.52
1167 1196 0.875728 CACTTCTCGACGGTCTCACT 59.124 55.000 6.57 0.00 0.00 3.41
1201 1230 0.793861 CGCTCCGTCGGATTTTTCAA 59.206 50.000 15.81 0.00 0.00 2.69
1204 1233 2.423577 CTCCGTCGGATTTTTCAAGGT 58.576 47.619 15.81 0.00 0.00 3.50
1209 1238 4.320935 CCGTCGGATTTTTCAAGGTTGATT 60.321 41.667 4.91 0.00 37.00 2.57
1212 1241 4.083003 TCGGATTTTTCAAGGTTGATTCCG 60.083 41.667 18.40 18.40 41.68 4.30
1297 1328 4.705023 CCACCAAGGTCGGATAATCTTTTT 59.295 41.667 0.00 0.00 0.00 1.94
1446 1514 4.017126 CCAACTTCCTTTCCCTGATTACC 58.983 47.826 0.00 0.00 0.00 2.85
1470 1546 3.371285 GCCTTCGTTAGAGTTTGGACATC 59.629 47.826 0.00 0.00 0.00 3.06
1486 1562 0.855349 CATCGTATGCCAGCGTCTTC 59.145 55.000 0.00 0.00 0.00 2.87
1487 1563 0.459899 ATCGTATGCCAGCGTCTTCA 59.540 50.000 0.00 0.00 0.00 3.02
1488 1564 0.459899 TCGTATGCCAGCGTCTTCAT 59.540 50.000 0.00 0.00 0.00 2.57
1491 1567 2.798145 CGTATGCCAGCGTCTTCATGTA 60.798 50.000 0.00 0.00 0.00 2.29
1575 1651 4.641645 TCCGGTTGCAGCACCAGG 62.642 66.667 2.45 2.45 36.49 4.45
1613 1690 1.666311 GGACGCGTAGGCATGATCTAC 60.666 57.143 13.97 13.44 39.92 2.59
1616 1693 1.001268 CGCGTAGGCATGATCTACACT 60.001 52.381 19.64 0.00 39.92 3.55
1617 1694 2.543861 CGCGTAGGCATGATCTACACTT 60.544 50.000 19.64 0.00 39.92 3.16
1618 1695 3.458189 GCGTAGGCATGATCTACACTTT 58.542 45.455 19.64 0.00 37.52 2.66
1720 1801 9.261180 AGACATTTGTATCCATTGTACGATAAG 57.739 33.333 0.00 0.00 0.00 1.73
1778 1859 1.825090 TGCTGGGAACATTGCTACAG 58.175 50.000 0.00 0.00 41.51 2.74
1803 1884 6.311935 GCATCTAATCAAATTTTCAGCTTGCA 59.688 34.615 0.00 0.00 0.00 4.08
1978 2075 7.108847 TGAAATTGTTCTGTTTTCAACCCATT 58.891 30.769 0.00 0.00 36.66 3.16
2083 2183 0.468029 CCTTGAGCACCCAGGTGTTT 60.468 55.000 17.82 7.14 46.90 2.83
2127 2229 5.450965 CCTCAAATCATATGTTCTTGGGTGC 60.451 44.000 1.90 0.00 0.00 5.01
2151 2260 1.404851 GCGCTCCTCTTAGAAGCACTT 60.405 52.381 0.00 0.00 0.00 3.16
2215 2332 7.169158 TCTTGGTTTTCTTCAGTTGAACATT 57.831 32.000 0.00 0.00 0.00 2.71
2220 2337 7.757624 TGGTTTTCTTCAGTTGAACATTTGTAC 59.242 33.333 0.00 0.00 0.00 2.90
2295 2412 2.866762 CTCTTATAAGTGCCGTTCTGCC 59.133 50.000 12.19 0.00 0.00 4.85
2300 2417 1.237285 AAGTGCCGTTCTGCCATGTC 61.237 55.000 0.00 0.00 0.00 3.06
2314 2431 3.134458 GCCATGTCCTGTAGAATGTAGC 58.866 50.000 0.00 0.00 0.00 3.58
2370 2496 8.707938 TGTGTTGAACATCTATGAGTATTCTG 57.292 34.615 0.00 0.00 32.36 3.02
2375 2501 5.774498 ACATCTATGAGTATTCTGACGCA 57.226 39.130 0.00 0.00 33.48 5.24
2598 2724 5.695816 GCTATGTGAAGAGAGAATCATCACC 59.304 44.000 9.86 0.00 41.62 4.02
2733 2859 2.035066 CCTTGCCCTGAAGTTTGAACTG 59.965 50.000 0.00 0.00 39.66 3.16
2746 2872 5.284079 AGTTTGAACTGCTACTTTTGCATG 58.716 37.500 0.00 0.00 39.86 4.06
2752 2878 5.240713 ACTGCTACTTTTGCATGATTAGC 57.759 39.130 0.00 10.42 39.86 3.09
2806 2933 3.857157 TTTTCCTGTGCTACAAGGAGT 57.143 42.857 0.00 0.00 30.84 3.85
2813 2940 4.074970 CTGTGCTACAAGGAGTGGATTTT 58.925 43.478 0.00 0.00 0.00 1.82
2814 2941 4.072131 TGTGCTACAAGGAGTGGATTTTC 58.928 43.478 0.00 0.00 0.00 2.29
2816 2943 4.762251 GTGCTACAAGGAGTGGATTTTCTT 59.238 41.667 0.00 0.00 0.00 2.52
2817 2944 4.761739 TGCTACAAGGAGTGGATTTTCTTG 59.238 41.667 0.00 0.00 40.21 3.02
2818 2945 4.762251 GCTACAAGGAGTGGATTTTCTTGT 59.238 41.667 11.02 11.02 46.35 3.16
2819 2946 5.241728 GCTACAAGGAGTGGATTTTCTTGTT 59.758 40.000 11.41 0.00 43.48 2.83
2820 2947 6.239036 GCTACAAGGAGTGGATTTTCTTGTTT 60.239 38.462 11.41 0.00 43.48 2.83
2821 2948 7.040686 GCTACAAGGAGTGGATTTTCTTGTTTA 60.041 37.037 11.41 0.00 43.48 2.01
2822 2949 7.277174 ACAAGGAGTGGATTTTCTTGTTTAG 57.723 36.000 0.00 0.00 43.48 1.85
2823 2950 5.966742 AGGAGTGGATTTTCTTGTTTAGC 57.033 39.130 0.00 0.00 0.00 3.09
2855 2988 6.866010 TGAATATGTATGCTCAGCGAAATT 57.134 33.333 0.00 0.00 0.00 1.82
2902 3035 1.467734 GCTTCTGATGGTGTTGAGCTG 59.532 52.381 0.00 0.00 0.00 4.24
2983 3118 0.706433 AAGTTCATGGGCAGGTGGAT 59.294 50.000 0.00 0.00 0.00 3.41
3013 3148 9.912634 TTTTCGCATTCTCATTCTTTATCTTTT 57.087 25.926 0.00 0.00 0.00 2.27
3014 3149 9.559958 TTTCGCATTCTCATTCTTTATCTTTTC 57.440 29.630 0.00 0.00 0.00 2.29
3015 3150 8.267620 TCGCATTCTCATTCTTTATCTTTTCA 57.732 30.769 0.00 0.00 0.00 2.69
3016 3151 8.729756 TCGCATTCTCATTCTTTATCTTTTCAA 58.270 29.630 0.00 0.00 0.00 2.69
3017 3152 9.007252 CGCATTCTCATTCTTTATCTTTTCAAG 57.993 33.333 0.00 0.00 0.00 3.02
3029 3164 4.732285 TCTTTTCAAGATGTTCGCTGAC 57.268 40.909 0.00 0.00 31.20 3.51
3030 3165 4.380531 TCTTTTCAAGATGTTCGCTGACT 58.619 39.130 0.00 0.00 31.20 3.41
3031 3166 4.212004 TCTTTTCAAGATGTTCGCTGACTG 59.788 41.667 0.00 0.00 31.20 3.51
3032 3167 3.385193 TTCAAGATGTTCGCTGACTGA 57.615 42.857 0.00 0.00 0.00 3.41
3033 3168 3.385193 TCAAGATGTTCGCTGACTGAA 57.615 42.857 0.00 0.00 0.00 3.02
3034 3169 3.727726 TCAAGATGTTCGCTGACTGAAA 58.272 40.909 0.00 0.00 0.00 2.69
3035 3170 4.126437 TCAAGATGTTCGCTGACTGAAAA 58.874 39.130 0.00 0.00 0.00 2.29
3036 3171 4.756642 TCAAGATGTTCGCTGACTGAAAAT 59.243 37.500 0.00 0.00 0.00 1.82
3037 3172 4.935885 AGATGTTCGCTGACTGAAAATC 57.064 40.909 0.00 0.00 39.40 2.17
3038 3173 4.318332 AGATGTTCGCTGACTGAAAATCA 58.682 39.130 8.21 0.00 40.86 2.57
3039 3174 4.940046 AGATGTTCGCTGACTGAAAATCAT 59.060 37.500 8.21 0.00 40.86 2.45
3040 3175 5.413833 AGATGTTCGCTGACTGAAAATCATT 59.586 36.000 8.21 0.00 40.86 2.57
3041 3176 5.437289 TGTTCGCTGACTGAAAATCATTT 57.563 34.783 0.00 0.00 0.00 2.32
3042 3177 5.214417 TGTTCGCTGACTGAAAATCATTTG 58.786 37.500 0.00 0.00 0.00 2.32
3043 3178 5.215160 GTTCGCTGACTGAAAATCATTTGT 58.785 37.500 0.00 0.00 0.00 2.83
3044 3179 6.017523 TGTTCGCTGACTGAAAATCATTTGTA 60.018 34.615 0.00 0.00 0.00 2.41
3045 3180 6.741992 TCGCTGACTGAAAATCATTTGTAT 57.258 33.333 0.00 0.00 0.00 2.29
3046 3181 7.144722 TCGCTGACTGAAAATCATTTGTATT 57.855 32.000 0.00 0.00 0.00 1.89
3047 3182 7.022979 TCGCTGACTGAAAATCATTTGTATTG 58.977 34.615 0.00 0.00 0.00 1.90
3048 3183 6.252015 CGCTGACTGAAAATCATTTGTATTGG 59.748 38.462 0.00 0.00 0.00 3.16
3049 3184 7.315142 GCTGACTGAAAATCATTTGTATTGGA 58.685 34.615 0.00 0.00 0.00 3.53
3050 3185 7.487189 GCTGACTGAAAATCATTTGTATTGGAG 59.513 37.037 0.00 0.00 0.00 3.86
3051 3186 8.408043 TGACTGAAAATCATTTGTATTGGAGT 57.592 30.769 0.00 0.00 0.00 3.85
3052 3187 8.859090 TGACTGAAAATCATTTGTATTGGAGTT 58.141 29.630 0.00 0.00 0.00 3.01
3053 3188 9.132521 GACTGAAAATCATTTGTATTGGAGTTG 57.867 33.333 0.00 0.00 0.00 3.16
3054 3189 8.859090 ACTGAAAATCATTTGTATTGGAGTTGA 58.141 29.630 0.00 0.00 0.00 3.18
3055 3190 9.695526 CTGAAAATCATTTGTATTGGAGTTGAA 57.304 29.630 0.00 0.00 0.00 2.69
3062 3197 9.474920 TCATTTGTATTGGAGTTGAAATTTGTC 57.525 29.630 0.00 0.00 0.00 3.18
3063 3198 8.711457 CATTTGTATTGGAGTTGAAATTTGTCC 58.289 33.333 0.00 0.00 0.00 4.02
3064 3199 6.968263 TGTATTGGAGTTGAAATTTGTCCA 57.032 33.333 0.00 0.00 35.45 4.02
3065 3200 6.980593 TGTATTGGAGTTGAAATTTGTCCAG 58.019 36.000 0.00 0.00 38.53 3.86
3066 3201 6.549364 TGTATTGGAGTTGAAATTTGTCCAGT 59.451 34.615 0.00 2.52 38.53 4.00
3067 3202 5.930837 TTGGAGTTGAAATTTGTCCAGTT 57.069 34.783 0.00 0.00 38.53 3.16
3068 3203 5.930837 TGGAGTTGAAATTTGTCCAGTTT 57.069 34.783 0.00 0.00 32.21 2.66
3069 3204 5.901552 TGGAGTTGAAATTTGTCCAGTTTC 58.098 37.500 0.00 0.00 32.21 2.78
3070 3205 5.656416 TGGAGTTGAAATTTGTCCAGTTTCT 59.344 36.000 0.00 0.00 32.21 2.52
3071 3206 6.183360 TGGAGTTGAAATTTGTCCAGTTTCTC 60.183 38.462 0.00 0.00 32.21 2.87
3072 3207 6.183360 GGAGTTGAAATTTGTCCAGTTTCTCA 60.183 38.462 0.00 0.00 33.99 3.27
3073 3208 7.352079 AGTTGAAATTTGTCCAGTTTCTCAT 57.648 32.000 0.00 0.00 33.99 2.90
3074 3209 7.785033 AGTTGAAATTTGTCCAGTTTCTCATT 58.215 30.769 0.00 0.00 33.99 2.57
3075 3210 7.922811 AGTTGAAATTTGTCCAGTTTCTCATTC 59.077 33.333 0.00 0.00 33.99 2.67
3076 3211 7.345422 TGAAATTTGTCCAGTTTCTCATTCA 57.655 32.000 0.00 0.00 33.99 2.57
3077 3212 7.202526 TGAAATTTGTCCAGTTTCTCATTCAC 58.797 34.615 0.00 0.00 33.99 3.18
3078 3213 6.713762 AATTTGTCCAGTTTCTCATTCACA 57.286 33.333 0.00 0.00 0.00 3.58
3079 3214 6.713762 ATTTGTCCAGTTTCTCATTCACAA 57.286 33.333 0.00 0.00 0.00 3.33
3080 3215 5.499139 TTGTCCAGTTTCTCATTCACAAC 57.501 39.130 0.00 0.00 0.00 3.32
3081 3216 4.780815 TGTCCAGTTTCTCATTCACAACT 58.219 39.130 0.00 0.00 0.00 3.16
3082 3217 5.192927 TGTCCAGTTTCTCATTCACAACTT 58.807 37.500 0.00 0.00 0.00 2.66
3083 3218 5.066375 TGTCCAGTTTCTCATTCACAACTTG 59.934 40.000 0.00 0.00 0.00 3.16
3084 3219 4.580167 TCCAGTTTCTCATTCACAACTTGG 59.420 41.667 0.00 0.00 0.00 3.61
3085 3220 4.339247 CCAGTTTCTCATTCACAACTTGGT 59.661 41.667 0.00 0.00 0.00 3.67
3086 3221 5.530915 CCAGTTTCTCATTCACAACTTGGTA 59.469 40.000 0.00 0.00 0.00 3.25
3087 3222 6.039270 CCAGTTTCTCATTCACAACTTGGTAA 59.961 38.462 0.00 0.00 0.00 2.85
3088 3223 6.912591 CAGTTTCTCATTCACAACTTGGTAAC 59.087 38.462 0.00 0.00 0.00 2.50
3089 3224 5.666969 TTCTCATTCACAACTTGGTAACG 57.333 39.130 0.00 0.00 42.51 3.18
3090 3225 4.699637 TCTCATTCACAACTTGGTAACGT 58.300 39.130 0.00 0.00 42.51 3.99
3091 3226 5.120399 TCTCATTCACAACTTGGTAACGTT 58.880 37.500 5.88 5.88 42.51 3.99
3092 3227 5.007234 TCTCATTCACAACTTGGTAACGTTG 59.993 40.000 11.99 0.00 44.48 4.10
3093 3228 4.035792 TCATTCACAACTTGGTAACGTTGG 59.964 41.667 11.99 0.00 43.52 3.77
3094 3229 3.263489 TCACAACTTGGTAACGTTGGA 57.737 42.857 11.99 0.00 43.52 3.53
3095 3230 3.199677 TCACAACTTGGTAACGTTGGAG 58.800 45.455 11.99 5.83 43.52 3.86
3096 3231 2.940410 CACAACTTGGTAACGTTGGAGT 59.060 45.455 11.99 6.47 43.52 3.85
3097 3232 3.375922 CACAACTTGGTAACGTTGGAGTT 59.624 43.478 11.99 11.93 43.52 3.01
3098 3233 4.571580 CACAACTTGGTAACGTTGGAGTTA 59.428 41.667 11.99 0.00 43.52 2.24
3099 3234 5.064962 CACAACTTGGTAACGTTGGAGTTAA 59.935 40.000 11.99 0.00 43.52 2.01
3100 3235 5.647225 ACAACTTGGTAACGTTGGAGTTAAA 59.353 36.000 11.99 0.00 43.52 1.52
3101 3236 6.150809 ACAACTTGGTAACGTTGGAGTTAAAA 59.849 34.615 11.99 0.00 43.52 1.52
3102 3237 6.947644 ACTTGGTAACGTTGGAGTTAAAAT 57.052 33.333 11.99 0.00 38.19 1.82
3103 3238 6.962686 ACTTGGTAACGTTGGAGTTAAAATC 58.037 36.000 11.99 0.00 38.19 2.17
3104 3239 6.769341 ACTTGGTAACGTTGGAGTTAAAATCT 59.231 34.615 11.99 0.00 38.19 2.40
3105 3240 6.548441 TGGTAACGTTGGAGTTAAAATCTG 57.452 37.500 11.99 0.00 38.19 2.90
3106 3241 6.289834 TGGTAACGTTGGAGTTAAAATCTGA 58.710 36.000 11.99 0.00 38.19 3.27
3107 3242 6.766944 TGGTAACGTTGGAGTTAAAATCTGAA 59.233 34.615 11.99 0.00 38.19 3.02
3108 3243 7.282675 TGGTAACGTTGGAGTTAAAATCTGAAA 59.717 33.333 11.99 0.00 38.19 2.69
3109 3244 7.588854 GGTAACGTTGGAGTTAAAATCTGAAAC 59.411 37.037 11.99 0.00 38.19 2.78
3110 3245 6.937436 ACGTTGGAGTTAAAATCTGAAACT 57.063 33.333 0.00 0.00 36.20 2.66
3111 3246 7.329588 ACGTTGGAGTTAAAATCTGAAACTT 57.670 32.000 0.00 0.00 33.72 2.66
3112 3247 7.193595 ACGTTGGAGTTAAAATCTGAAACTTG 58.806 34.615 0.00 0.00 33.72 3.16
3113 3248 7.148137 ACGTTGGAGTTAAAATCTGAAACTTGT 60.148 33.333 0.00 0.00 33.72 3.16
3114 3249 7.700656 CGTTGGAGTTAAAATCTGAAACTTGTT 59.299 33.333 0.00 0.00 33.72 2.83
3175 3310 9.658799 ATCATCTTCTCTTTTCTATTTTGACGA 57.341 29.630 0.00 0.00 0.00 4.20
3176 3311 9.489084 TCATCTTCTCTTTTCTATTTTGACGAA 57.511 29.630 0.00 0.00 0.00 3.85
3177 3312 9.535270 CATCTTCTCTTTTCTATTTTGACGAAC 57.465 33.333 0.00 0.00 0.00 3.95
3178 3313 7.784176 TCTTCTCTTTTCTATTTTGACGAACG 58.216 34.615 0.00 0.00 0.00 3.95
3179 3314 6.462073 TCTCTTTTCTATTTTGACGAACGG 57.538 37.500 0.00 0.00 0.00 4.44
3180 3315 5.025986 TCTTTTCTATTTTGACGAACGGC 57.974 39.130 0.00 0.00 0.00 5.68
3181 3316 4.512198 TCTTTTCTATTTTGACGAACGGCA 59.488 37.500 0.00 0.00 0.00 5.69
3182 3317 4.398549 TTTCTATTTTGACGAACGGCAG 57.601 40.909 2.42 0.00 33.06 4.85
3183 3318 3.034721 TCTATTTTGACGAACGGCAGT 57.965 42.857 2.42 0.00 33.06 4.40
3184 3319 2.734606 TCTATTTTGACGAACGGCAGTG 59.265 45.455 2.42 0.00 33.06 3.66
3185 3320 0.040425 ATTTTGACGAACGGCAGTGC 60.040 50.000 6.55 6.55 33.06 4.40
3186 3321 2.054140 TTTTGACGAACGGCAGTGCC 62.054 55.000 25.07 25.07 46.75 5.01
3201 3336 3.189568 TGCCACTGCAGAAAACACT 57.810 47.368 23.35 0.00 44.23 3.55
3202 3337 0.740149 TGCCACTGCAGAAAACACTG 59.260 50.000 23.35 5.94 44.23 3.66
3214 3349 6.833342 CAGAAAACACTGCTAAATTTGCTT 57.167 33.333 0.00 0.00 0.00 3.91
3215 3350 6.642917 CAGAAAACACTGCTAAATTTGCTTG 58.357 36.000 0.00 6.99 0.00 4.01
3216 3351 5.754890 AGAAAACACTGCTAAATTTGCTTGG 59.245 36.000 0.00 1.48 0.00 3.61
3217 3352 4.670896 AACACTGCTAAATTTGCTTGGT 57.329 36.364 0.00 1.22 0.00 3.67
3218 3353 4.670896 ACACTGCTAAATTTGCTTGGTT 57.329 36.364 0.00 0.00 0.00 3.67
3219 3354 4.370917 ACACTGCTAAATTTGCTTGGTTG 58.629 39.130 0.00 1.15 0.00 3.77
3220 3355 4.099266 ACACTGCTAAATTTGCTTGGTTGA 59.901 37.500 0.00 0.00 0.00 3.18
3221 3356 5.049167 CACTGCTAAATTTGCTTGGTTGAA 58.951 37.500 0.00 0.00 0.00 2.69
3222 3357 5.523188 CACTGCTAAATTTGCTTGGTTGAAA 59.477 36.000 0.00 0.00 0.00 2.69
3223 3358 5.754890 ACTGCTAAATTTGCTTGGTTGAAAG 59.245 36.000 0.00 0.00 0.00 2.62
3224 3359 5.911752 TGCTAAATTTGCTTGGTTGAAAGA 58.088 33.333 0.00 0.00 0.00 2.52
3225 3360 5.984926 TGCTAAATTTGCTTGGTTGAAAGAG 59.015 36.000 0.00 0.00 0.00 2.85
3226 3361 5.107337 GCTAAATTTGCTTGGTTGAAAGAGC 60.107 40.000 0.00 0.00 35.74 4.09
3227 3362 4.677673 AATTTGCTTGGTTGAAAGAGCT 57.322 36.364 0.00 0.00 36.16 4.09
3228 3363 3.715628 TTTGCTTGGTTGAAAGAGCTC 57.284 42.857 5.27 5.27 36.16 4.09
3229 3364 1.609208 TGCTTGGTTGAAAGAGCTCC 58.391 50.000 10.93 0.00 36.16 4.70
3230 3365 0.884514 GCTTGGTTGAAAGAGCTCCC 59.115 55.000 10.93 3.59 32.54 4.30
3231 3366 1.539157 CTTGGTTGAAAGAGCTCCCC 58.461 55.000 10.93 0.00 0.00 4.81
3232 3367 0.112412 TTGGTTGAAAGAGCTCCCCC 59.888 55.000 10.93 2.14 0.00 5.40
3247 3382 3.772619 CCCCCTATACAACCACACG 57.227 57.895 0.00 0.00 0.00 4.49
3248 3383 0.906775 CCCCCTATACAACCACACGT 59.093 55.000 0.00 0.00 0.00 4.49
3249 3384 2.109774 CCCCCTATACAACCACACGTA 58.890 52.381 0.00 0.00 0.00 3.57
3250 3385 2.101917 CCCCCTATACAACCACACGTAG 59.898 54.545 0.00 0.00 0.00 3.51
3251 3386 2.482490 CCCCTATACAACCACACGTAGC 60.482 54.545 0.00 0.00 0.00 3.58
3252 3387 2.482490 CCCTATACAACCACACGTAGCC 60.482 54.545 0.00 0.00 0.00 3.93
3253 3388 2.456989 CTATACAACCACACGTAGCCG 58.543 52.381 0.00 0.00 40.83 5.52
3254 3389 0.889994 ATACAACCACACGTAGCCGA 59.110 50.000 0.00 0.00 37.88 5.54
3255 3390 0.039256 TACAACCACACGTAGCCGAC 60.039 55.000 0.00 0.00 37.88 4.79
3256 3391 1.006571 CAACCACACGTAGCCGACT 60.007 57.895 0.00 0.00 37.88 4.18
3257 3392 1.006571 AACCACACGTAGCCGACTG 60.007 57.895 0.00 0.00 37.88 3.51
3258 3393 2.809601 CCACACGTAGCCGACTGC 60.810 66.667 0.00 0.00 41.71 4.40
3259 3394 2.809601 CACACGTAGCCGACTGCC 60.810 66.667 0.00 0.00 42.71 4.85
3260 3395 2.989824 ACACGTAGCCGACTGCCT 60.990 61.111 0.00 0.00 42.71 4.75
3261 3396 2.507102 CACGTAGCCGACTGCCTG 60.507 66.667 0.00 0.00 42.71 4.85
3262 3397 2.989824 ACGTAGCCGACTGCCTGT 60.990 61.111 0.00 0.00 42.71 4.00
3263 3398 2.261671 CGTAGCCGACTGCCTGTT 59.738 61.111 0.00 0.00 42.71 3.16
3264 3399 1.374252 CGTAGCCGACTGCCTGTTT 60.374 57.895 0.00 0.00 42.71 2.83
3265 3400 1.352156 CGTAGCCGACTGCCTGTTTC 61.352 60.000 0.00 0.00 42.71 2.78
3266 3401 1.080093 TAGCCGACTGCCTGTTTCG 60.080 57.895 0.00 0.00 42.71 3.46
3269 3404 3.550656 CGACTGCCTGTTTCGGAC 58.449 61.111 0.00 0.00 0.00 4.79
3270 3405 1.006102 CGACTGCCTGTTTCGGACT 60.006 57.895 0.00 0.00 0.00 3.85
3271 3406 0.600255 CGACTGCCTGTTTCGGACTT 60.600 55.000 0.00 0.00 0.00 3.01
3272 3407 1.594331 GACTGCCTGTTTCGGACTTT 58.406 50.000 0.00 0.00 0.00 2.66
3273 3408 1.947456 GACTGCCTGTTTCGGACTTTT 59.053 47.619 0.00 0.00 0.00 2.27
3274 3409 2.357952 GACTGCCTGTTTCGGACTTTTT 59.642 45.455 0.00 0.00 0.00 1.94
3275 3410 2.357952 ACTGCCTGTTTCGGACTTTTTC 59.642 45.455 0.00 0.00 0.00 2.29
3276 3411 2.357637 CTGCCTGTTTCGGACTTTTTCA 59.642 45.455 0.00 0.00 0.00 2.69
3277 3412 2.098443 TGCCTGTTTCGGACTTTTTCAC 59.902 45.455 0.00 0.00 0.00 3.18
3278 3413 2.357952 GCCTGTTTCGGACTTTTTCACT 59.642 45.455 0.00 0.00 0.00 3.41
3279 3414 3.562557 GCCTGTTTCGGACTTTTTCACTA 59.437 43.478 0.00 0.00 0.00 2.74
3280 3415 4.215613 GCCTGTTTCGGACTTTTTCACTAT 59.784 41.667 0.00 0.00 0.00 2.12
3281 3416 5.278315 GCCTGTTTCGGACTTTTTCACTATT 60.278 40.000 0.00 0.00 0.00 1.73
3282 3417 6.371389 CCTGTTTCGGACTTTTTCACTATTC 58.629 40.000 0.00 0.00 0.00 1.75
3283 3418 6.204882 CCTGTTTCGGACTTTTTCACTATTCT 59.795 38.462 0.00 0.00 0.00 2.40
3284 3419 6.954944 TGTTTCGGACTTTTTCACTATTCTG 58.045 36.000 0.00 0.00 0.00 3.02
3285 3420 6.764085 TGTTTCGGACTTTTTCACTATTCTGA 59.236 34.615 0.00 0.00 0.00 3.27
3286 3421 6.780706 TTCGGACTTTTTCACTATTCTGAC 57.219 37.500 0.00 0.00 0.00 3.51
3287 3422 5.235516 TCGGACTTTTTCACTATTCTGACC 58.764 41.667 0.00 0.00 0.00 4.02
3288 3423 4.392138 CGGACTTTTTCACTATTCTGACCC 59.608 45.833 0.00 0.00 0.00 4.46
3289 3424 5.313712 GGACTTTTTCACTATTCTGACCCA 58.686 41.667 0.00 0.00 0.00 4.51
3290 3425 5.946377 GGACTTTTTCACTATTCTGACCCAT 59.054 40.000 0.00 0.00 0.00 4.00
3291 3426 6.434340 GGACTTTTTCACTATTCTGACCCATT 59.566 38.462 0.00 0.00 0.00 3.16
3292 3427 7.039714 GGACTTTTTCACTATTCTGACCCATTT 60.040 37.037 0.00 0.00 0.00 2.32
3293 3428 7.661040 ACTTTTTCACTATTCTGACCCATTTG 58.339 34.615 0.00 0.00 0.00 2.32
3294 3429 5.643379 TTTCACTATTCTGACCCATTTGC 57.357 39.130 0.00 0.00 0.00 3.68
3295 3430 4.574674 TCACTATTCTGACCCATTTGCT 57.425 40.909 0.00 0.00 0.00 3.91
3296 3431 4.922206 TCACTATTCTGACCCATTTGCTT 58.078 39.130 0.00 0.00 0.00 3.91
3297 3432 6.061022 TCACTATTCTGACCCATTTGCTTA 57.939 37.500 0.00 0.00 0.00 3.09
3298 3433 6.480763 TCACTATTCTGACCCATTTGCTTAA 58.519 36.000 0.00 0.00 0.00 1.85
3299 3434 6.599244 TCACTATTCTGACCCATTTGCTTAAG 59.401 38.462 0.00 0.00 0.00 1.85
3300 3435 6.375455 CACTATTCTGACCCATTTGCTTAAGT 59.625 38.462 4.02 0.00 0.00 2.24
3301 3436 6.948309 ACTATTCTGACCCATTTGCTTAAGTT 59.052 34.615 4.02 0.00 0.00 2.66
3302 3437 6.670695 ATTCTGACCCATTTGCTTAAGTTT 57.329 33.333 4.02 0.00 0.00 2.66
3303 3438 7.775053 ATTCTGACCCATTTGCTTAAGTTTA 57.225 32.000 4.02 0.00 0.00 2.01
3304 3439 6.817765 TCTGACCCATTTGCTTAAGTTTAG 57.182 37.500 4.02 0.00 0.00 1.85
3305 3440 5.183140 TCTGACCCATTTGCTTAAGTTTAGC 59.817 40.000 6.92 6.92 39.10 3.09
3306 3441 4.830046 TGACCCATTTGCTTAAGTTTAGCA 59.170 37.500 12.35 12.35 46.26 3.49
3314 3449 5.933187 TGCTTAAGTTTAGCACGATTTGA 57.067 34.783 12.35 0.00 43.30 2.69
3315 3450 5.685841 TGCTTAAGTTTAGCACGATTTGAC 58.314 37.500 12.35 0.00 43.30 3.18
3316 3451 5.086727 GCTTAAGTTTAGCACGATTTGACC 58.913 41.667 8.95 0.00 38.51 4.02
3317 3452 5.616488 TTAAGTTTAGCACGATTTGACCC 57.384 39.130 0.00 0.00 0.00 4.46
3318 3453 2.073816 AGTTTAGCACGATTTGACCCG 58.926 47.619 0.00 0.00 0.00 5.28
3319 3454 1.802365 GTTTAGCACGATTTGACCCGT 59.198 47.619 0.00 0.00 39.88 5.28
3327 3462 4.897025 ACGATTTGACCCGTGTTTAAAA 57.103 36.364 0.00 0.00 37.64 1.52
3328 3463 4.851010 ACGATTTGACCCGTGTTTAAAAG 58.149 39.130 0.00 0.00 37.64 2.27
3329 3464 4.336153 ACGATTTGACCCGTGTTTAAAAGT 59.664 37.500 0.00 0.00 37.64 2.66
3330 3465 5.163632 ACGATTTGACCCGTGTTTAAAAGTT 60.164 36.000 0.00 0.00 37.64 2.66
3331 3466 5.744819 CGATTTGACCCGTGTTTAAAAGTTT 59.255 36.000 0.00 0.00 0.00 2.66
3332 3467 6.253942 CGATTTGACCCGTGTTTAAAAGTTTT 59.746 34.615 6.06 6.06 0.00 2.43
3333 3468 7.201453 CGATTTGACCCGTGTTTAAAAGTTTTT 60.201 33.333 6.10 0.00 0.00 1.94
3352 3487 4.782019 TTTTCGGATCTGACCCATTTTG 57.218 40.909 2.94 0.00 0.00 2.44
3353 3488 3.712016 TTCGGATCTGACCCATTTTGA 57.288 42.857 2.94 0.00 0.00 2.69
3354 3489 3.712016 TCGGATCTGACCCATTTTGAA 57.288 42.857 0.00 0.00 0.00 2.69
3355 3490 4.027674 TCGGATCTGACCCATTTTGAAA 57.972 40.909 0.00 0.00 0.00 2.69
3356 3491 3.756434 TCGGATCTGACCCATTTTGAAAC 59.244 43.478 0.00 0.00 0.00 2.78
3357 3492 3.426159 CGGATCTGACCCATTTTGAAACG 60.426 47.826 0.00 0.00 0.00 3.60
3358 3493 3.506067 GGATCTGACCCATTTTGAAACGT 59.494 43.478 0.00 0.00 0.00 3.99
3359 3494 4.379499 GGATCTGACCCATTTTGAAACGTC 60.379 45.833 0.00 0.00 0.00 4.34
3360 3495 3.546724 TCTGACCCATTTTGAAACGTCA 58.453 40.909 0.00 0.00 0.00 4.35
3361 3496 4.141287 TCTGACCCATTTTGAAACGTCAT 58.859 39.130 0.00 0.00 32.48 3.06
3362 3497 4.215399 TCTGACCCATTTTGAAACGTCATC 59.785 41.667 0.00 0.00 32.48 2.92
3363 3498 3.885901 TGACCCATTTTGAAACGTCATCA 59.114 39.130 0.00 0.00 32.48 3.07
3364 3499 4.339530 TGACCCATTTTGAAACGTCATCAA 59.660 37.500 11.46 11.46 35.11 2.57
3365 3500 4.616953 ACCCATTTTGAAACGTCATCAAC 58.383 39.130 14.26 0.00 36.57 3.18
3366 3501 4.340950 ACCCATTTTGAAACGTCATCAACT 59.659 37.500 14.26 4.93 36.57 3.16
3367 3502 4.681025 CCCATTTTGAAACGTCATCAACTG 59.319 41.667 14.26 13.80 36.57 3.16
3368 3503 5.280945 CCATTTTGAAACGTCATCAACTGT 58.719 37.500 14.26 3.74 36.57 3.55
3369 3504 5.173673 CCATTTTGAAACGTCATCAACTGTG 59.826 40.000 14.26 12.62 36.57 3.66
3370 3505 3.961477 TTGAAACGTCATCAACTGTGG 57.039 42.857 11.46 0.00 32.10 4.17
3371 3506 1.601903 TGAAACGTCATCAACTGTGGC 59.398 47.619 1.82 0.00 0.00 5.01
3373 3508 3.951332 CGTCATCAACTGTGGCGT 58.049 55.556 0.00 0.00 39.64 5.68
3374 3509 1.781555 CGTCATCAACTGTGGCGTC 59.218 57.895 0.00 0.00 39.64 5.19
3375 3510 0.667487 CGTCATCAACTGTGGCGTCT 60.667 55.000 0.00 0.00 39.64 4.18
3376 3511 1.512926 GTCATCAACTGTGGCGTCTT 58.487 50.000 0.00 0.00 0.00 3.01
3377 3512 1.195448 GTCATCAACTGTGGCGTCTTG 59.805 52.381 0.00 0.00 0.00 3.02
3378 3513 0.110056 CATCAACTGTGGCGTCTTGC 60.110 55.000 0.00 0.00 45.38 4.01
3379 3514 0.250467 ATCAACTGTGGCGTCTTGCT 60.250 50.000 0.00 0.00 45.43 3.91
3380 3515 0.463654 TCAACTGTGGCGTCTTGCTT 60.464 50.000 0.00 0.00 45.43 3.91
3381 3516 0.317269 CAACTGTGGCGTCTTGCTTG 60.317 55.000 0.00 0.00 45.43 4.01
3382 3517 2.063541 AACTGTGGCGTCTTGCTTGC 62.064 55.000 0.00 0.00 45.43 4.01
3383 3518 2.515757 TGTGGCGTCTTGCTTGCA 60.516 55.556 0.00 0.00 45.43 4.08
3384 3519 2.050985 GTGGCGTCTTGCTTGCAC 60.051 61.111 0.00 0.00 45.43 4.57
3385 3520 2.203195 TGGCGTCTTGCTTGCACT 60.203 55.556 0.00 0.00 45.43 4.40
3386 3521 2.253452 GGCGTCTTGCTTGCACTG 59.747 61.111 0.00 0.00 45.43 3.66
3387 3522 2.253758 GGCGTCTTGCTTGCACTGA 61.254 57.895 0.00 0.00 45.43 3.41
3388 3523 1.648720 GCGTCTTGCTTGCACTGAA 59.351 52.632 0.00 0.00 41.73 3.02
3389 3524 0.385223 GCGTCTTGCTTGCACTGAAG 60.385 55.000 0.00 1.20 41.73 3.02
3390 3525 1.220529 CGTCTTGCTTGCACTGAAGA 58.779 50.000 0.00 0.00 0.00 2.87
3391 3526 1.070309 CGTCTTGCTTGCACTGAAGAC 60.070 52.381 16.03 16.03 40.54 3.01
3392 3527 1.070309 GTCTTGCTTGCACTGAAGACG 60.070 52.381 12.67 0.00 36.13 4.18
3393 3528 0.385223 CTTGCTTGCACTGAAGACGC 60.385 55.000 0.00 0.00 0.00 5.19
3394 3529 1.785041 TTGCTTGCACTGAAGACGCC 61.785 55.000 0.00 0.00 0.00 5.68
3395 3530 1.963338 GCTTGCACTGAAGACGCCT 60.963 57.895 0.00 0.00 0.00 5.52
3396 3531 1.905922 GCTTGCACTGAAGACGCCTC 61.906 60.000 0.00 0.00 0.00 4.70
3397 3532 0.601046 CTTGCACTGAAGACGCCTCA 60.601 55.000 0.00 0.00 0.00 3.86
3398 3533 0.179059 TTGCACTGAAGACGCCTCAA 60.179 50.000 0.00 0.00 0.00 3.02
3399 3534 0.179059 TGCACTGAAGACGCCTCAAA 60.179 50.000 0.00 0.00 0.00 2.69
3400 3535 0.235926 GCACTGAAGACGCCTCAAAC 59.764 55.000 0.00 0.00 0.00 2.93
3401 3536 0.868406 CACTGAAGACGCCTCAAACC 59.132 55.000 0.00 0.00 0.00 3.27
3402 3537 0.250338 ACTGAAGACGCCTCAAACCC 60.250 55.000 0.00 0.00 0.00 4.11
3403 3538 0.955919 CTGAAGACGCCTCAAACCCC 60.956 60.000 0.00 0.00 0.00 4.95
3404 3539 2.032071 AAGACGCCTCAAACCCCG 59.968 61.111 0.00 0.00 0.00 5.73
3405 3540 3.546714 AAGACGCCTCAAACCCCGG 62.547 63.158 0.00 0.00 0.00 5.73
3443 3578 1.785041 TTGCTTGCACTGAAGACGCC 61.785 55.000 0.00 0.00 0.00 5.68
3452 3587 0.955919 CTGAAGACGCCTCAAACCCC 60.956 60.000 0.00 0.00 0.00 4.95
3453 3588 2.032071 AAGACGCCTCAAACCCCG 59.968 61.111 0.00 0.00 0.00 5.73
3479 3614 2.831770 CCTGACACACACCCTGCT 59.168 61.111 0.00 0.00 0.00 4.24
3480 3615 1.302033 CCTGACACACACCCTGCTC 60.302 63.158 0.00 0.00 0.00 4.26
3481 3616 1.447217 CTGACACACACCCTGCTCA 59.553 57.895 0.00 0.00 0.00 4.26
3482 3617 0.602106 CTGACACACACCCTGCTCAG 60.602 60.000 0.00 0.00 0.00 3.35
3483 3618 1.963338 GACACACACCCTGCTCAGC 60.963 63.158 0.00 0.00 0.00 4.26
3484 3619 2.388890 GACACACACCCTGCTCAGCT 62.389 60.000 0.00 0.00 0.00 4.24
3485 3620 1.964891 CACACACCCTGCTCAGCTG 60.965 63.158 7.63 7.63 0.00 4.24
3486 3621 2.429058 CACACCCTGCTCAGCTGT 59.571 61.111 14.67 0.00 0.00 4.40
3551 3686 5.335935 CATGGCGTCTACATAGCTACTATG 58.664 45.833 12.02 12.02 46.43 2.23
3576 3711 7.766738 TGTGCGTATATGATTTTTAACCAGAGA 59.233 33.333 0.00 0.00 0.00 3.10
3617 3752 0.038892 GTCCAGCAAGTTGGCACATG 60.039 55.000 4.75 0.00 39.30 3.21
3639 3774 1.069823 CCCTGCAGCGAGACTTATCAT 59.930 52.381 8.66 0.00 0.00 2.45
3690 3825 8.097038 TCTTATATGATTGTCATCAGGCTAACC 58.903 37.037 0.00 0.00 42.93 2.85
3705 6415 3.181476 GGCTAACCGATGAAATTTGCCAT 60.181 43.478 0.00 0.00 41.87 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.919602 TCCCAAAATCTAGCCAGTCCTT 59.080 45.455 0.00 0.00 0.00 3.36
84 85 1.606903 TGTGCATGATCACACAAGCA 58.393 45.000 14.82 9.78 43.48 3.91
105 106 4.479619 CACGCTCATTCTCGATGATCATA 58.520 43.478 8.54 0.00 43.59 2.15
231 232 1.301401 ATGTGTTGTGGGACGTCGG 60.301 57.895 9.92 0.00 0.00 4.79
268 269 0.038166 GCCCACCACTCCTCAATGAA 59.962 55.000 0.00 0.00 0.00 2.57
288 289 1.533625 CTCTTTGTCGGCCATTCCAA 58.466 50.000 2.24 0.00 34.01 3.53
297 298 4.142534 ACAAATCATGATGCTCTTTGTCGG 60.143 41.667 15.39 0.00 35.70 4.79
428 441 9.328845 ACACAAGCAAAAAGATCAAACATAAAT 57.671 25.926 0.00 0.00 0.00 1.40
432 445 7.414319 CCAAACACAAGCAAAAAGATCAAACAT 60.414 33.333 0.00 0.00 0.00 2.71
451 466 6.913673 ACAAACAACGTATACATTCCAAACAC 59.086 34.615 3.32 0.00 0.00 3.32
463 480 4.375205 CGACTTTCGCACAAACAACGTATA 60.375 41.667 0.00 0.00 31.14 1.47
467 484 1.101454 CGACTTTCGCACAAACAACG 58.899 50.000 0.00 0.00 31.14 4.10
480 497 1.785041 AATGCAGCGCACACGACTTT 61.785 50.000 11.47 0.00 43.04 2.66
481 498 1.785041 AAATGCAGCGCACACGACTT 61.785 50.000 11.47 0.00 43.04 3.01
487 506 4.866088 GCTAAAATGCAGCGCACA 57.134 50.000 11.47 8.11 43.04 4.57
534 553 0.605319 GTCCATCGCCTGGTTTGACA 60.605 55.000 0.00 0.00 46.08 3.58
552 571 5.610982 CGTTAAAAATTACTCTGTCGCGTGT 60.611 40.000 5.77 1.43 0.00 4.49
554 573 4.664891 GCGTTAAAAATTACTCTGTCGCGT 60.665 41.667 5.77 0.00 0.00 6.01
562 581 5.077424 CACTCCACGCGTTAAAAATTACTC 58.923 41.667 10.22 0.00 0.00 2.59
567 586 3.549221 CCAACACTCCACGCGTTAAAAAT 60.549 43.478 10.22 0.00 0.00 1.82
579 598 0.546122 AACAGCTGTCCAACACTCCA 59.454 50.000 21.95 0.00 0.00 3.86
582 601 0.546122 TCCAACAGCTGTCCAACACT 59.454 50.000 21.95 0.00 0.00 3.55
584 603 2.136298 TTTCCAACAGCTGTCCAACA 57.864 45.000 21.95 1.54 0.00 3.33
588 607 1.200948 GAGCATTTCCAACAGCTGTCC 59.799 52.381 21.95 1.60 37.48 4.02
592 611 7.651027 ATTTATTAGAGCATTTCCAACAGCT 57.349 32.000 0.00 0.00 40.60 4.24
832 851 6.642707 ATCCTGAAGCTACTACTACATGAC 57.357 41.667 0.00 0.00 0.00 3.06
833 852 6.607600 ACAATCCTGAAGCTACTACTACATGA 59.392 38.462 0.00 0.00 0.00 3.07
834 853 6.810911 ACAATCCTGAAGCTACTACTACATG 58.189 40.000 0.00 0.00 0.00 3.21
835 854 6.836527 AGACAATCCTGAAGCTACTACTACAT 59.163 38.462 0.00 0.00 0.00 2.29
836 855 6.188407 AGACAATCCTGAAGCTACTACTACA 58.812 40.000 0.00 0.00 0.00 2.74
837 856 6.319152 TGAGACAATCCTGAAGCTACTACTAC 59.681 42.308 0.00 0.00 0.00 2.73
838 857 6.424032 TGAGACAATCCTGAAGCTACTACTA 58.576 40.000 0.00 0.00 0.00 1.82
839 858 5.265191 TGAGACAATCCTGAAGCTACTACT 58.735 41.667 0.00 0.00 0.00 2.57
840 859 5.358442 TCTGAGACAATCCTGAAGCTACTAC 59.642 44.000 0.00 0.00 0.00 2.73
841 860 5.510430 TCTGAGACAATCCTGAAGCTACTA 58.490 41.667 0.00 0.00 0.00 1.82
842 861 4.348486 TCTGAGACAATCCTGAAGCTACT 58.652 43.478 0.00 0.00 0.00 2.57
843 862 4.400884 TCTCTGAGACAATCCTGAAGCTAC 59.599 45.833 2.58 0.00 0.00 3.58
844 863 4.604156 TCTCTGAGACAATCCTGAAGCTA 58.396 43.478 2.58 0.00 0.00 3.32
845 864 3.439154 TCTCTGAGACAATCCTGAAGCT 58.561 45.455 2.58 0.00 0.00 3.74
846 865 3.883830 TCTCTGAGACAATCCTGAAGC 57.116 47.619 2.58 0.00 0.00 3.86
868 887 6.224584 TGTTTTTCCTTTCGTGAACCTTTTT 58.775 32.000 0.00 0.00 0.00 1.94
869 888 5.785243 TGTTTTTCCTTTCGTGAACCTTTT 58.215 33.333 0.00 0.00 0.00 2.27
870 889 5.394224 TGTTTTTCCTTTCGTGAACCTTT 57.606 34.783 0.00 0.00 0.00 3.11
871 890 5.588240 GATGTTTTTCCTTTCGTGAACCTT 58.412 37.500 0.00 0.00 0.00 3.50
872 891 4.261031 CGATGTTTTTCCTTTCGTGAACCT 60.261 41.667 0.00 0.00 0.00 3.50
873 892 3.972502 CGATGTTTTTCCTTTCGTGAACC 59.027 43.478 0.00 0.00 0.00 3.62
874 893 3.420904 GCGATGTTTTTCCTTTCGTGAAC 59.579 43.478 0.00 0.00 32.65 3.18
879 898 1.978782 GCAGCGATGTTTTTCCTTTCG 59.021 47.619 1.22 0.00 0.00 3.46
918 937 1.750399 CCGGAATTGAGGGGTGCTG 60.750 63.158 0.00 0.00 0.00 4.41
921 940 1.077716 GGACCGGAATTGAGGGGTG 60.078 63.158 9.46 0.00 31.66 4.61
934 953 0.953960 GCAACTGGTAAGTGGGACCG 60.954 60.000 0.00 0.00 40.09 4.79
952 971 5.765677 GGTATAAGAGGAGGAAAAGGATTGC 59.234 44.000 0.00 0.00 0.00 3.56
961 981 4.008916 AGCAAGGGTATAAGAGGAGGAA 57.991 45.455 0.00 0.00 0.00 3.36
967 987 3.199946 TGTGGGAAGCAAGGGTATAAGAG 59.800 47.826 0.00 0.00 0.00 2.85
1002 1023 1.075525 AGGGCTGCACGGGTATCTA 60.076 57.895 0.50 0.00 0.00 1.98
1078 1106 6.379988 AGAGAGAAGAGAAATTACCAGGAGAC 59.620 42.308 0.00 0.00 0.00 3.36
1079 1107 6.498538 AGAGAGAAGAGAAATTACCAGGAGA 58.501 40.000 0.00 0.00 0.00 3.71
1097 1125 0.336737 GGGTGGGGAGAGAAGAGAGA 59.663 60.000 0.00 0.00 0.00 3.10
1098 1126 0.689412 GGGGTGGGGAGAGAAGAGAG 60.689 65.000 0.00 0.00 0.00 3.20
1201 1230 3.268103 AAGGCGCCGGAATCAACCT 62.268 57.895 23.20 0.00 0.00 3.50
1204 1233 1.302913 TTCAAGGCGCCGGAATCAA 60.303 52.632 26.14 11.29 0.00 2.57
1209 1238 4.257654 TTGGTTCAAGGCGCCGGA 62.258 61.111 23.20 20.37 0.00 5.14
1212 1241 1.244019 ACATCTTGGTTCAAGGCGCC 61.244 55.000 21.89 21.89 41.33 6.53
1297 1328 3.515286 CCGAGTAAGCGCGAGGGA 61.515 66.667 12.10 0.00 40.32 4.20
1446 1514 2.737252 GTCCAAACTCTAACGAAGGCAG 59.263 50.000 0.00 0.00 0.00 4.85
1470 1546 0.578683 CATGAAGACGCTGGCATACG 59.421 55.000 8.33 8.33 0.00 3.06
1486 1562 4.154195 GTGTGCCCTCTTTTACAGTACATG 59.846 45.833 0.00 0.00 0.00 3.21
1487 1563 4.202419 TGTGTGCCCTCTTTTACAGTACAT 60.202 41.667 0.00 0.00 0.00 2.29
1488 1564 3.134985 TGTGTGCCCTCTTTTACAGTACA 59.865 43.478 0.00 0.00 0.00 2.90
1491 1567 3.149196 CATGTGTGCCCTCTTTTACAGT 58.851 45.455 0.00 0.00 0.00 3.55
1575 1651 1.881973 TCCAATGTGAGAACAAGCAGC 59.118 47.619 0.00 0.00 0.00 5.25
1616 1693 9.863845 CACCTAAAGTTTCTCCAAAAAGTAAAA 57.136 29.630 0.00 0.00 0.00 1.52
1617 1694 9.027202 ACACCTAAAGTTTCTCCAAAAAGTAAA 57.973 29.630 0.00 0.00 0.00 2.01
1618 1695 8.584063 ACACCTAAAGTTTCTCCAAAAAGTAA 57.416 30.769 0.00 0.00 0.00 2.24
1646 1723 4.275936 CCTAAAAGACCAAGACCAACACAG 59.724 45.833 0.00 0.00 0.00 3.66
1679 1756 2.238942 TGTCTCTTCGCAAGCAAGAA 57.761 45.000 7.82 0.00 34.64 2.52
1720 1801 8.514330 TTATTGATGTGTAACCCTTGGATAAC 57.486 34.615 0.00 0.00 34.36 1.89
1778 1859 6.311935 TGCAAGCTGAAAATTTGATTAGATGC 59.688 34.615 0.00 0.00 0.00 3.91
1803 1884 8.584157 TCAAAACAATAATACAAAGCAGGTCAT 58.416 29.630 0.00 0.00 0.00 3.06
2033 2132 3.575805 TGGGCAATTTCTGGACTCTTTT 58.424 40.909 0.00 0.00 0.00 2.27
2075 2174 8.786826 TTCTACAAATATCTACCAAACACCTG 57.213 34.615 0.00 0.00 0.00 4.00
2127 2229 1.535860 GCTTCTAAGAGGAGCGCTCAG 60.536 57.143 36.27 24.70 0.00 3.35
2260 2377 7.232941 GCACTTATAAGAGGACCCTTAGATGTA 59.767 40.741 19.38 0.00 31.44 2.29
2295 2412 5.163468 ACTCAGCTACATTCTACAGGACATG 60.163 44.000 0.00 0.00 0.00 3.21
2300 2417 4.867047 CACAACTCAGCTACATTCTACAGG 59.133 45.833 0.00 0.00 0.00 4.00
2314 2431 8.873215 ACTAAAATACGGATATCACAACTCAG 57.127 34.615 4.83 0.00 0.00 3.35
2346 2463 8.812329 GTCAGAATACTCATAGATGTTCAACAC 58.188 37.037 0.00 0.00 0.00 3.32
2370 2496 5.600908 TGTAAGTACCATTCTTTTGCGTC 57.399 39.130 0.00 0.00 0.00 5.19
2598 2724 5.904080 GCAATAACAAGCAAGATAAGTAGCG 59.096 40.000 0.00 0.00 0.00 4.26
2733 2859 6.258727 TCAGTAGCTAATCATGCAAAAGTAGC 59.741 38.462 18.17 18.17 35.32 3.58
2746 2872 8.977505 GTCTGATTCTCATTTCAGTAGCTAATC 58.022 37.037 0.00 0.00 40.22 1.75
2790 2917 0.976641 TCCACTCCTTGTAGCACAGG 59.023 55.000 0.00 0.00 0.00 4.00
2806 2933 7.394359 AGCAGAATAGCTAAACAAGAAAATCCA 59.606 33.333 0.00 0.00 44.50 3.41
2813 2940 9.049523 CATATTCAGCAGAATAGCTAAACAAGA 57.950 33.333 15.63 0.00 46.69 3.02
2814 2941 8.834465 ACATATTCAGCAGAATAGCTAAACAAG 58.166 33.333 15.63 2.37 46.69 3.16
2818 2945 8.939929 GCATACATATTCAGCAGAATAGCTAAA 58.060 33.333 15.63 2.43 46.69 1.85
2819 2946 8.316946 AGCATACATATTCAGCAGAATAGCTAA 58.683 33.333 16.08 5.20 46.69 3.09
2820 2947 7.845037 AGCATACATATTCAGCAGAATAGCTA 58.155 34.615 16.08 0.00 46.69 3.32
2821 2948 6.709281 AGCATACATATTCAGCAGAATAGCT 58.291 36.000 15.63 14.42 46.69 3.32
2822 2949 6.592994 TGAGCATACATATTCAGCAGAATAGC 59.407 38.462 15.63 12.74 46.69 2.97
2823 2950 8.187354 CTGAGCATACATATTCAGCAGAATAG 57.813 38.462 15.63 10.66 46.69 1.73
2902 3035 0.889186 TTGGAGCAAAGAAGACGGGC 60.889 55.000 0.00 0.00 0.00 6.13
2962 3097 0.890683 CCACCTGCCCATGAACTTTC 59.109 55.000 0.00 0.00 0.00 2.62
2989 3124 8.729756 TGAAAAGATAAAGAATGAGAATGCGAA 58.270 29.630 0.00 0.00 0.00 4.70
2991 3126 8.900511 TTGAAAAGATAAAGAATGAGAATGCG 57.099 30.769 0.00 0.00 0.00 4.73
3013 3148 3.385193 TTCAGTCAGCGAACATCTTGA 57.615 42.857 0.00 0.00 0.00 3.02
3014 3149 4.472691 TTTTCAGTCAGCGAACATCTTG 57.527 40.909 0.00 0.00 0.00 3.02
3015 3150 4.756642 TGATTTTCAGTCAGCGAACATCTT 59.243 37.500 0.00 0.00 32.97 2.40
3016 3151 4.318332 TGATTTTCAGTCAGCGAACATCT 58.682 39.130 0.00 0.00 32.97 2.90
3017 3152 4.668576 TGATTTTCAGTCAGCGAACATC 57.331 40.909 0.00 0.00 32.58 3.06
3018 3153 5.633830 AATGATTTTCAGTCAGCGAACAT 57.366 34.783 0.00 0.00 0.00 2.71
3019 3154 5.214417 CAAATGATTTTCAGTCAGCGAACA 58.786 37.500 0.00 0.00 0.00 3.18
3020 3155 5.215160 ACAAATGATTTTCAGTCAGCGAAC 58.785 37.500 0.00 0.00 0.00 3.95
3021 3156 5.437289 ACAAATGATTTTCAGTCAGCGAA 57.563 34.783 0.00 0.00 0.00 4.70
3022 3157 6.741992 ATACAAATGATTTTCAGTCAGCGA 57.258 33.333 0.00 0.00 0.00 4.93
3023 3158 6.252015 CCAATACAAATGATTTTCAGTCAGCG 59.748 38.462 0.00 0.00 0.00 5.18
3024 3159 7.315142 TCCAATACAAATGATTTTCAGTCAGC 58.685 34.615 0.00 0.00 0.00 4.26
3025 3160 8.517878 ACTCCAATACAAATGATTTTCAGTCAG 58.482 33.333 0.00 0.00 0.00 3.51
3026 3161 8.408043 ACTCCAATACAAATGATTTTCAGTCA 57.592 30.769 0.00 0.00 0.00 3.41
3027 3162 9.132521 CAACTCCAATACAAATGATTTTCAGTC 57.867 33.333 0.00 0.00 0.00 3.51
3028 3163 8.859090 TCAACTCCAATACAAATGATTTTCAGT 58.141 29.630 0.00 0.00 0.00 3.41
3029 3164 9.695526 TTCAACTCCAATACAAATGATTTTCAG 57.304 29.630 0.00 0.00 0.00 3.02
3036 3171 9.474920 GACAAATTTCAACTCCAATACAAATGA 57.525 29.630 0.00 0.00 0.00 2.57
3037 3172 8.711457 GGACAAATTTCAACTCCAATACAAATG 58.289 33.333 0.00 0.00 0.00 2.32
3038 3173 8.428063 TGGACAAATTTCAACTCCAATACAAAT 58.572 29.630 0.00 0.00 0.00 2.32
3039 3174 7.786030 TGGACAAATTTCAACTCCAATACAAA 58.214 30.769 0.00 0.00 0.00 2.83
3040 3175 7.069331 ACTGGACAAATTTCAACTCCAATACAA 59.931 33.333 0.00 0.00 30.54 2.41
3041 3176 6.549364 ACTGGACAAATTTCAACTCCAATACA 59.451 34.615 0.00 0.00 30.54 2.29
3042 3177 6.981722 ACTGGACAAATTTCAACTCCAATAC 58.018 36.000 0.00 0.00 30.54 1.89
3043 3178 7.595819 AACTGGACAAATTTCAACTCCAATA 57.404 32.000 0.00 0.00 30.54 1.90
3044 3179 6.484364 AACTGGACAAATTTCAACTCCAAT 57.516 33.333 0.00 0.00 30.54 3.16
3045 3180 5.930837 AACTGGACAAATTTCAACTCCAA 57.069 34.783 0.00 0.00 30.54 3.53
3046 3181 5.656416 AGAAACTGGACAAATTTCAACTCCA 59.344 36.000 9.86 0.00 35.26 3.86
3047 3182 6.149129 AGAAACTGGACAAATTTCAACTCC 57.851 37.500 9.86 0.00 35.26 3.85
3048 3183 6.795399 TGAGAAACTGGACAAATTTCAACTC 58.205 36.000 9.86 0.00 35.26 3.01
3049 3184 6.773976 TGAGAAACTGGACAAATTTCAACT 57.226 33.333 9.86 0.00 35.26 3.16
3050 3185 7.706179 TGAATGAGAAACTGGACAAATTTCAAC 59.294 33.333 9.86 5.76 35.26 3.18
3051 3186 7.706179 GTGAATGAGAAACTGGACAAATTTCAA 59.294 33.333 9.86 1.58 35.26 2.69
3052 3187 7.147932 TGTGAATGAGAAACTGGACAAATTTCA 60.148 33.333 9.86 0.00 35.26 2.69
3053 3188 7.202526 TGTGAATGAGAAACTGGACAAATTTC 58.797 34.615 0.00 0.00 33.40 2.17
3054 3189 7.111247 TGTGAATGAGAAACTGGACAAATTT 57.889 32.000 0.00 0.00 0.00 1.82
3055 3190 6.713762 TGTGAATGAGAAACTGGACAAATT 57.286 33.333 0.00 0.00 0.00 1.82
3056 3191 6.322201 AGTTGTGAATGAGAAACTGGACAAAT 59.678 34.615 0.00 0.00 31.82 2.32
3057 3192 5.652014 AGTTGTGAATGAGAAACTGGACAAA 59.348 36.000 0.00 0.00 31.82 2.83
3058 3193 5.192927 AGTTGTGAATGAGAAACTGGACAA 58.807 37.500 0.00 0.00 31.82 3.18
3059 3194 4.780815 AGTTGTGAATGAGAAACTGGACA 58.219 39.130 0.00 0.00 31.82 4.02
3060 3195 5.506317 CCAAGTTGTGAATGAGAAACTGGAC 60.506 44.000 1.45 0.00 33.30 4.02
3061 3196 4.580167 CCAAGTTGTGAATGAGAAACTGGA 59.420 41.667 1.45 0.00 33.30 3.86
3062 3197 4.339247 ACCAAGTTGTGAATGAGAAACTGG 59.661 41.667 1.45 0.00 33.30 4.00
3063 3198 5.505173 ACCAAGTTGTGAATGAGAAACTG 57.495 39.130 1.45 0.00 33.30 3.16
3064 3199 6.238374 CGTTACCAAGTTGTGAATGAGAAACT 60.238 38.462 1.45 0.00 34.40 2.66
3065 3200 5.907391 CGTTACCAAGTTGTGAATGAGAAAC 59.093 40.000 1.45 0.00 0.00 2.78
3066 3201 5.587043 ACGTTACCAAGTTGTGAATGAGAAA 59.413 36.000 1.45 0.00 0.00 2.52
3067 3202 5.120399 ACGTTACCAAGTTGTGAATGAGAA 58.880 37.500 1.45 0.00 0.00 2.87
3068 3203 4.699637 ACGTTACCAAGTTGTGAATGAGA 58.300 39.130 1.45 0.00 0.00 3.27
3069 3204 5.204833 CAACGTTACCAAGTTGTGAATGAG 58.795 41.667 0.00 0.00 41.82 2.90
3070 3205 4.035792 CCAACGTTACCAAGTTGTGAATGA 59.964 41.667 0.00 0.00 44.35 2.57
3071 3206 4.035792 TCCAACGTTACCAAGTTGTGAATG 59.964 41.667 0.00 3.74 44.35 2.67
3072 3207 4.200874 TCCAACGTTACCAAGTTGTGAAT 58.799 39.130 0.00 0.00 44.35 2.57
3073 3208 3.607741 TCCAACGTTACCAAGTTGTGAA 58.392 40.909 0.00 0.00 44.35 3.18
3074 3209 3.199677 CTCCAACGTTACCAAGTTGTGA 58.800 45.455 0.00 4.27 44.35 3.58
3075 3210 2.940410 ACTCCAACGTTACCAAGTTGTG 59.060 45.455 0.00 0.00 44.35 3.33
3076 3211 3.271055 ACTCCAACGTTACCAAGTTGT 57.729 42.857 0.00 0.00 44.35 3.32
3077 3212 5.738118 TTAACTCCAACGTTACCAAGTTG 57.262 39.130 18.99 0.00 45.14 3.16
3078 3213 6.756299 TTTTAACTCCAACGTTACCAAGTT 57.244 33.333 0.00 10.65 0.00 2.66
3079 3214 6.769341 AGATTTTAACTCCAACGTTACCAAGT 59.231 34.615 0.00 0.00 0.00 3.16
3080 3215 7.041644 TCAGATTTTAACTCCAACGTTACCAAG 60.042 37.037 0.00 0.00 0.00 3.61
3081 3216 6.766944 TCAGATTTTAACTCCAACGTTACCAA 59.233 34.615 0.00 0.00 0.00 3.67
3082 3217 6.289834 TCAGATTTTAACTCCAACGTTACCA 58.710 36.000 0.00 0.00 0.00 3.25
3083 3218 6.790285 TCAGATTTTAACTCCAACGTTACC 57.210 37.500 0.00 0.00 0.00 2.85
3084 3219 8.340443 AGTTTCAGATTTTAACTCCAACGTTAC 58.660 33.333 0.00 0.00 0.00 2.50
3085 3220 8.441312 AGTTTCAGATTTTAACTCCAACGTTA 57.559 30.769 0.00 0.00 0.00 3.18
3086 3221 7.329588 AGTTTCAGATTTTAACTCCAACGTT 57.670 32.000 0.00 0.00 0.00 3.99
3087 3222 6.937436 AGTTTCAGATTTTAACTCCAACGT 57.063 33.333 0.00 0.00 0.00 3.99
3088 3223 7.193595 ACAAGTTTCAGATTTTAACTCCAACG 58.806 34.615 0.00 0.00 31.26 4.10
3089 3224 8.926715 AACAAGTTTCAGATTTTAACTCCAAC 57.073 30.769 0.00 0.00 31.26 3.77
3149 3284 9.658799 TCGTCAAAATAGAAAAGAGAAGATGAT 57.341 29.630 0.00 0.00 0.00 2.45
3150 3285 9.489084 TTCGTCAAAATAGAAAAGAGAAGATGA 57.511 29.630 0.00 0.00 0.00 2.92
3151 3286 9.535270 GTTCGTCAAAATAGAAAAGAGAAGATG 57.465 33.333 0.00 0.00 0.00 2.90
3152 3287 8.436200 CGTTCGTCAAAATAGAAAAGAGAAGAT 58.564 33.333 0.00 0.00 0.00 2.40
3153 3288 7.095774 CCGTTCGTCAAAATAGAAAAGAGAAGA 60.096 37.037 0.00 0.00 0.00 2.87
3154 3289 7.010023 CCGTTCGTCAAAATAGAAAAGAGAAG 58.990 38.462 0.00 0.00 0.00 2.85
3155 3290 6.565247 GCCGTTCGTCAAAATAGAAAAGAGAA 60.565 38.462 0.00 0.00 0.00 2.87
3156 3291 5.107220 GCCGTTCGTCAAAATAGAAAAGAGA 60.107 40.000 0.00 0.00 0.00 3.10
3157 3292 5.080068 GCCGTTCGTCAAAATAGAAAAGAG 58.920 41.667 0.00 0.00 0.00 2.85
3158 3293 4.512198 TGCCGTTCGTCAAAATAGAAAAGA 59.488 37.500 0.00 0.00 0.00 2.52
3159 3294 4.778904 TGCCGTTCGTCAAAATAGAAAAG 58.221 39.130 0.00 0.00 0.00 2.27
3160 3295 4.273969 ACTGCCGTTCGTCAAAATAGAAAA 59.726 37.500 0.00 0.00 0.00 2.29
3161 3296 3.810941 ACTGCCGTTCGTCAAAATAGAAA 59.189 39.130 0.00 0.00 0.00 2.52
3162 3297 3.185594 CACTGCCGTTCGTCAAAATAGAA 59.814 43.478 0.00 0.00 0.00 2.10
3163 3298 2.734606 CACTGCCGTTCGTCAAAATAGA 59.265 45.455 0.00 0.00 0.00 1.98
3164 3299 2.724839 GCACTGCCGTTCGTCAAAATAG 60.725 50.000 0.00 0.00 0.00 1.73
3165 3300 1.195900 GCACTGCCGTTCGTCAAAATA 59.804 47.619 0.00 0.00 0.00 1.40
3166 3301 0.040425 GCACTGCCGTTCGTCAAAAT 60.040 50.000 0.00 0.00 0.00 1.82
3167 3302 1.353804 GCACTGCCGTTCGTCAAAA 59.646 52.632 0.00 0.00 0.00 2.44
3168 3303 2.539338 GGCACTGCCGTTCGTCAAA 61.539 57.895 3.73 0.00 39.62 2.69
3169 3304 2.970324 GGCACTGCCGTTCGTCAA 60.970 61.111 3.73 0.00 39.62 3.18
3184 3319 3.557207 CAGTGTTTTCTGCAGTGGC 57.443 52.632 14.67 3.65 41.68 5.01
3191 3326 6.292488 CCAAGCAAATTTAGCAGTGTTTTCTG 60.292 38.462 12.88 0.00 38.35 3.02
3192 3327 5.754890 CCAAGCAAATTTAGCAGTGTTTTCT 59.245 36.000 12.88 0.00 0.00 2.52
3193 3328 5.523552 ACCAAGCAAATTTAGCAGTGTTTTC 59.476 36.000 12.88 0.00 0.00 2.29
3194 3329 5.427378 ACCAAGCAAATTTAGCAGTGTTTT 58.573 33.333 12.88 0.00 0.00 2.43
3195 3330 5.022282 ACCAAGCAAATTTAGCAGTGTTT 57.978 34.783 12.88 0.00 0.00 2.83
3196 3331 4.670896 ACCAAGCAAATTTAGCAGTGTT 57.329 36.364 12.88 0.00 0.00 3.32
3197 3332 4.099266 TCAACCAAGCAAATTTAGCAGTGT 59.901 37.500 12.88 5.69 0.00 3.55
3198 3333 4.619973 TCAACCAAGCAAATTTAGCAGTG 58.380 39.130 12.88 10.31 0.00 3.66
3199 3334 4.935352 TCAACCAAGCAAATTTAGCAGT 57.065 36.364 12.88 6.37 0.00 4.40
3200 3335 5.984926 TCTTTCAACCAAGCAAATTTAGCAG 59.015 36.000 12.88 6.70 0.00 4.24
3201 3336 5.911752 TCTTTCAACCAAGCAAATTTAGCA 58.088 33.333 12.88 0.00 0.00 3.49
3202 3337 5.107337 GCTCTTTCAACCAAGCAAATTTAGC 60.107 40.000 0.00 0.00 34.86 3.09
3203 3338 6.218746 AGCTCTTTCAACCAAGCAAATTTAG 58.781 36.000 0.00 0.00 37.22 1.85
3204 3339 6.160576 AGCTCTTTCAACCAAGCAAATTTA 57.839 33.333 0.00 0.00 37.22 1.40
3205 3340 5.027293 AGCTCTTTCAACCAAGCAAATTT 57.973 34.783 0.00 0.00 37.22 1.82
3206 3341 4.502087 GGAGCTCTTTCAACCAAGCAAATT 60.502 41.667 14.64 0.00 37.22 1.82
3207 3342 3.006217 GGAGCTCTTTCAACCAAGCAAAT 59.994 43.478 14.64 0.00 37.22 2.32
3208 3343 2.362077 GGAGCTCTTTCAACCAAGCAAA 59.638 45.455 14.64 0.00 37.22 3.68
3209 3344 1.956477 GGAGCTCTTTCAACCAAGCAA 59.044 47.619 14.64 0.00 37.22 3.91
3210 3345 1.609208 GGAGCTCTTTCAACCAAGCA 58.391 50.000 14.64 0.00 37.22 3.91
3211 3346 0.884514 GGGAGCTCTTTCAACCAAGC 59.115 55.000 14.64 0.00 34.95 4.01
3212 3347 1.539157 GGGGAGCTCTTTCAACCAAG 58.461 55.000 14.64 0.00 0.00 3.61
3213 3348 0.112412 GGGGGAGCTCTTTCAACCAA 59.888 55.000 14.64 0.00 0.00 3.67
3214 3349 1.767692 GGGGGAGCTCTTTCAACCA 59.232 57.895 14.64 0.00 0.00 3.67
3215 3350 4.745116 GGGGGAGCTCTTTCAACC 57.255 61.111 14.64 4.70 0.00 3.77
3229 3364 0.906775 ACGTGTGGTTGTATAGGGGG 59.093 55.000 0.00 0.00 0.00 5.40
3230 3365 2.482490 GCTACGTGTGGTTGTATAGGGG 60.482 54.545 0.00 0.00 0.00 4.79
3231 3366 2.482490 GGCTACGTGTGGTTGTATAGGG 60.482 54.545 0.00 0.00 0.00 3.53
3232 3367 2.797087 CGGCTACGTGTGGTTGTATAGG 60.797 54.545 0.00 0.00 34.81 2.57
3233 3368 2.097954 TCGGCTACGTGTGGTTGTATAG 59.902 50.000 0.00 0.00 41.85 1.31
3234 3369 2.090760 TCGGCTACGTGTGGTTGTATA 58.909 47.619 0.00 0.00 41.85 1.47
3235 3370 0.889994 TCGGCTACGTGTGGTTGTAT 59.110 50.000 0.00 0.00 41.85 2.29
3236 3371 0.039256 GTCGGCTACGTGTGGTTGTA 60.039 55.000 0.00 0.00 41.85 2.41
3237 3372 1.300388 GTCGGCTACGTGTGGTTGT 60.300 57.895 0.00 0.00 41.85 3.32
3238 3373 1.006571 AGTCGGCTACGTGTGGTTG 60.007 57.895 0.00 0.00 41.85 3.77
3239 3374 1.006571 CAGTCGGCTACGTGTGGTT 60.007 57.895 0.00 0.00 41.85 3.67
3240 3375 2.649034 CAGTCGGCTACGTGTGGT 59.351 61.111 0.00 0.00 41.85 4.16
3241 3376 2.809601 GCAGTCGGCTACGTGTGG 60.810 66.667 0.00 0.00 41.85 4.17
3242 3377 2.809601 GGCAGTCGGCTACGTGTG 60.810 66.667 0.00 0.00 44.01 3.82
3250 3385 3.423154 CCGAAACAGGCAGTCGGC 61.423 66.667 0.00 0.00 46.91 5.54
3252 3387 0.600255 AAGTCCGAAACAGGCAGTCG 60.600 55.000 0.00 0.00 34.58 4.18
3253 3388 1.594331 AAAGTCCGAAACAGGCAGTC 58.406 50.000 0.00 0.00 0.00 3.51
3254 3389 2.052782 AAAAGTCCGAAACAGGCAGT 57.947 45.000 0.00 0.00 0.00 4.40
3255 3390 2.357637 TGAAAAAGTCCGAAACAGGCAG 59.642 45.455 0.00 0.00 0.00 4.85
3256 3391 2.098443 GTGAAAAAGTCCGAAACAGGCA 59.902 45.455 0.00 0.00 0.00 4.75
3257 3392 2.357952 AGTGAAAAAGTCCGAAACAGGC 59.642 45.455 0.00 0.00 0.00 4.85
3258 3393 5.941948 ATAGTGAAAAAGTCCGAAACAGG 57.058 39.130 0.00 0.00 0.00 4.00
3259 3394 7.042051 TCAGAATAGTGAAAAAGTCCGAAACAG 60.042 37.037 0.00 0.00 0.00 3.16
3260 3395 6.764085 TCAGAATAGTGAAAAAGTCCGAAACA 59.236 34.615 0.00 0.00 0.00 2.83
3261 3396 7.070183 GTCAGAATAGTGAAAAAGTCCGAAAC 58.930 38.462 0.00 0.00 0.00 2.78
3262 3397 6.204108 GGTCAGAATAGTGAAAAAGTCCGAAA 59.796 38.462 0.00 0.00 0.00 3.46
3263 3398 5.699458 GGTCAGAATAGTGAAAAAGTCCGAA 59.301 40.000 0.00 0.00 0.00 4.30
3264 3399 5.235516 GGTCAGAATAGTGAAAAAGTCCGA 58.764 41.667 0.00 0.00 0.00 4.55
3265 3400 4.392138 GGGTCAGAATAGTGAAAAAGTCCG 59.608 45.833 0.00 0.00 0.00 4.79
3266 3401 5.313712 TGGGTCAGAATAGTGAAAAAGTCC 58.686 41.667 0.00 0.00 0.00 3.85
3267 3402 7.454260 AATGGGTCAGAATAGTGAAAAAGTC 57.546 36.000 0.00 0.00 0.00 3.01
3268 3403 7.661040 CAAATGGGTCAGAATAGTGAAAAAGT 58.339 34.615 0.00 0.00 0.00 2.66
3269 3404 6.587608 GCAAATGGGTCAGAATAGTGAAAAAG 59.412 38.462 0.00 0.00 0.00 2.27
3270 3405 6.267471 AGCAAATGGGTCAGAATAGTGAAAAA 59.733 34.615 0.00 0.00 0.00 1.94
3271 3406 5.774690 AGCAAATGGGTCAGAATAGTGAAAA 59.225 36.000 0.00 0.00 0.00 2.29
3272 3407 5.324409 AGCAAATGGGTCAGAATAGTGAAA 58.676 37.500 0.00 0.00 0.00 2.69
3273 3408 4.922206 AGCAAATGGGTCAGAATAGTGAA 58.078 39.130 0.00 0.00 0.00 3.18
3274 3409 4.574674 AGCAAATGGGTCAGAATAGTGA 57.425 40.909 0.00 0.00 0.00 3.41
3275 3410 6.375455 ACTTAAGCAAATGGGTCAGAATAGTG 59.625 38.462 1.29 0.00 0.00 2.74
3276 3411 6.485171 ACTTAAGCAAATGGGTCAGAATAGT 58.515 36.000 1.29 0.00 0.00 2.12
3277 3412 7.396540 AACTTAAGCAAATGGGTCAGAATAG 57.603 36.000 1.29 0.00 0.00 1.73
3278 3413 7.775053 AAACTTAAGCAAATGGGTCAGAATA 57.225 32.000 1.29 0.00 0.00 1.75
3279 3414 6.670695 AAACTTAAGCAAATGGGTCAGAAT 57.329 33.333 1.29 0.00 0.00 2.40
3280 3415 6.294508 GCTAAACTTAAGCAAATGGGTCAGAA 60.295 38.462 1.29 0.00 39.83 3.02
3281 3416 5.183140 GCTAAACTTAAGCAAATGGGTCAGA 59.817 40.000 1.29 0.00 39.83 3.27
3282 3417 5.048083 TGCTAAACTTAAGCAAATGGGTCAG 60.048 40.000 1.29 0.00 46.57 3.51
3283 3418 4.830046 TGCTAAACTTAAGCAAATGGGTCA 59.170 37.500 1.29 0.00 46.57 4.02
3284 3419 5.385509 TGCTAAACTTAAGCAAATGGGTC 57.614 39.130 1.29 0.00 46.57 4.46
3293 3428 5.086727 GGTCAAATCGTGCTAAACTTAAGC 58.913 41.667 1.29 0.00 40.50 3.09
3294 3429 5.628134 GGGTCAAATCGTGCTAAACTTAAG 58.372 41.667 0.00 0.00 0.00 1.85
3295 3430 4.152759 CGGGTCAAATCGTGCTAAACTTAA 59.847 41.667 0.00 0.00 0.00 1.85
3296 3431 3.680937 CGGGTCAAATCGTGCTAAACTTA 59.319 43.478 0.00 0.00 0.00 2.24
3297 3432 2.482721 CGGGTCAAATCGTGCTAAACTT 59.517 45.455 0.00 0.00 0.00 2.66
3298 3433 2.073816 CGGGTCAAATCGTGCTAAACT 58.926 47.619 0.00 0.00 0.00 2.66
3299 3434 1.802365 ACGGGTCAAATCGTGCTAAAC 59.198 47.619 0.00 0.00 38.25 2.01
3300 3435 2.172851 ACGGGTCAAATCGTGCTAAA 57.827 45.000 0.00 0.00 38.25 1.85
3301 3436 3.919163 ACGGGTCAAATCGTGCTAA 57.081 47.368 0.00 0.00 38.25 3.09
3306 3441 4.336153 ACTTTTAAACACGGGTCAAATCGT 59.664 37.500 0.00 0.00 40.49 3.73
3307 3442 4.851010 ACTTTTAAACACGGGTCAAATCG 58.149 39.130 0.00 0.00 0.00 3.34
3308 3443 7.528481 AAAACTTTTAAACACGGGTCAAATC 57.472 32.000 0.00 0.00 0.00 2.17
3309 3444 7.908827 AAAAACTTTTAAACACGGGTCAAAT 57.091 28.000 0.00 0.00 0.00 2.32
3330 3465 4.830046 TCAAAATGGGTCAGATCCGAAAAA 59.170 37.500 0.00 0.00 0.00 1.94
3331 3466 4.402829 TCAAAATGGGTCAGATCCGAAAA 58.597 39.130 0.00 0.00 0.00 2.29
3332 3467 4.027674 TCAAAATGGGTCAGATCCGAAA 57.972 40.909 0.00 0.00 0.00 3.46
3333 3468 3.712016 TCAAAATGGGTCAGATCCGAA 57.288 42.857 0.00 0.00 0.00 4.30
3334 3469 3.712016 TTCAAAATGGGTCAGATCCGA 57.288 42.857 0.00 0.00 0.00 4.55
3335 3470 3.426159 CGTTTCAAAATGGGTCAGATCCG 60.426 47.826 0.00 0.00 0.00 4.18
3336 3471 3.506067 ACGTTTCAAAATGGGTCAGATCC 59.494 43.478 0.00 0.00 0.00 3.36
3337 3472 4.215399 TGACGTTTCAAAATGGGTCAGATC 59.785 41.667 0.00 0.00 0.00 2.75
3338 3473 4.141287 TGACGTTTCAAAATGGGTCAGAT 58.859 39.130 0.00 0.00 0.00 2.90
3339 3474 3.546724 TGACGTTTCAAAATGGGTCAGA 58.453 40.909 0.00 0.00 0.00 3.27
3340 3475 3.980646 TGACGTTTCAAAATGGGTCAG 57.019 42.857 0.00 0.00 0.00 3.51
3341 3476 3.885901 TGATGACGTTTCAAAATGGGTCA 59.114 39.130 0.00 8.44 34.61 4.02
3342 3477 4.497473 TGATGACGTTTCAAAATGGGTC 57.503 40.909 0.00 0.25 34.61 4.46
3343 3478 4.340950 AGTTGATGACGTTTCAAAATGGGT 59.659 37.500 14.21 0.00 35.03 4.51
3344 3479 4.681025 CAGTTGATGACGTTTCAAAATGGG 59.319 41.667 14.21 2.67 35.03 4.00
3345 3480 5.173673 CACAGTTGATGACGTTTCAAAATGG 59.826 40.000 20.51 12.74 35.03 3.16
3346 3481 5.173673 CCACAGTTGATGACGTTTCAAAATG 59.826 40.000 14.21 16.27 35.03 2.32
3347 3482 5.280945 CCACAGTTGATGACGTTTCAAAAT 58.719 37.500 14.21 6.09 35.03 1.82
3348 3483 4.667262 CCACAGTTGATGACGTTTCAAAA 58.333 39.130 14.21 0.00 35.03 2.44
3349 3484 3.488384 GCCACAGTTGATGACGTTTCAAA 60.488 43.478 14.21 0.00 35.03 2.69
3350 3485 2.032799 GCCACAGTTGATGACGTTTCAA 59.967 45.455 9.93 9.93 34.61 2.69
3351 3486 1.601903 GCCACAGTTGATGACGTTTCA 59.398 47.619 0.00 0.00 35.73 2.69
3352 3487 1.398451 CGCCACAGTTGATGACGTTTC 60.398 52.381 0.00 0.00 0.00 2.78
3353 3488 0.586319 CGCCACAGTTGATGACGTTT 59.414 50.000 0.00 0.00 0.00 3.60
3354 3489 0.531974 ACGCCACAGTTGATGACGTT 60.532 50.000 0.00 0.00 34.51 3.99
3355 3490 0.944311 GACGCCACAGTTGATGACGT 60.944 55.000 0.00 0.00 38.50 4.34
3356 3491 0.667487 AGACGCCACAGTTGATGACG 60.667 55.000 0.00 0.00 0.00 4.35
3357 3492 1.195448 CAAGACGCCACAGTTGATGAC 59.805 52.381 0.00 0.00 0.00 3.06
3358 3493 1.511850 CAAGACGCCACAGTTGATGA 58.488 50.000 0.00 0.00 0.00 2.92
3359 3494 0.110056 GCAAGACGCCACAGTTGATG 60.110 55.000 0.00 0.00 32.94 3.07
3360 3495 0.250467 AGCAAGACGCCACAGTTGAT 60.250 50.000 0.00 0.00 44.04 2.57
3361 3496 0.463654 AAGCAAGACGCCACAGTTGA 60.464 50.000 0.00 0.00 44.04 3.18
3362 3497 0.317269 CAAGCAAGACGCCACAGTTG 60.317 55.000 0.00 0.00 44.04 3.16
3363 3498 2.024918 CAAGCAAGACGCCACAGTT 58.975 52.632 0.00 0.00 44.04 3.16
3364 3499 2.546494 GCAAGCAAGACGCCACAGT 61.546 57.895 0.00 0.00 44.04 3.55
3365 3500 2.253452 GCAAGCAAGACGCCACAG 59.747 61.111 0.00 0.00 44.04 3.66
3366 3501 2.515757 TGCAAGCAAGACGCCACA 60.516 55.556 0.00 0.00 44.04 4.17
3367 3502 2.050985 GTGCAAGCAAGACGCCAC 60.051 61.111 0.00 0.00 44.04 5.01
3368 3503 2.203195 AGTGCAAGCAAGACGCCA 60.203 55.556 0.00 0.00 44.04 5.69
3369 3504 1.785041 TTCAGTGCAAGCAAGACGCC 61.785 55.000 0.00 0.00 44.04 5.68
3370 3505 0.385223 CTTCAGTGCAAGCAAGACGC 60.385 55.000 0.00 0.00 42.91 5.19
3371 3506 1.070309 GTCTTCAGTGCAAGCAAGACG 60.070 52.381 14.03 3.34 36.44 4.18
3372 3507 1.070309 CGTCTTCAGTGCAAGCAAGAC 60.070 52.381 17.27 17.27 40.87 3.01
3373 3508 1.220529 CGTCTTCAGTGCAAGCAAGA 58.779 50.000 0.00 0.00 0.00 3.02
3374 3509 0.385223 GCGTCTTCAGTGCAAGCAAG 60.385 55.000 0.00 0.00 0.00 4.01
3375 3510 1.648720 GCGTCTTCAGTGCAAGCAA 59.351 52.632 0.00 0.00 0.00 3.91
3376 3511 2.253758 GGCGTCTTCAGTGCAAGCA 61.254 57.895 0.00 0.00 0.00 3.91
3377 3512 1.905922 GAGGCGTCTTCAGTGCAAGC 61.906 60.000 0.00 0.00 0.00 4.01
3378 3513 0.601046 TGAGGCGTCTTCAGTGCAAG 60.601 55.000 8.06 0.00 0.00 4.01
3379 3514 0.179059 TTGAGGCGTCTTCAGTGCAA 60.179 50.000 8.06 0.00 0.00 4.08
3380 3515 0.179059 TTTGAGGCGTCTTCAGTGCA 60.179 50.000 8.06 0.00 0.00 4.57
3381 3516 0.235926 GTTTGAGGCGTCTTCAGTGC 59.764 55.000 8.06 0.00 0.00 4.40
3382 3517 0.868406 GGTTTGAGGCGTCTTCAGTG 59.132 55.000 8.06 0.00 0.00 3.66
3383 3518 0.250338 GGGTTTGAGGCGTCTTCAGT 60.250 55.000 8.06 0.00 0.00 3.41
3384 3519 0.955919 GGGGTTTGAGGCGTCTTCAG 60.956 60.000 8.06 0.00 0.00 3.02
3385 3520 1.072505 GGGGTTTGAGGCGTCTTCA 59.927 57.895 8.06 0.00 0.00 3.02
3386 3521 2.033194 CGGGGTTTGAGGCGTCTTC 61.033 63.158 8.06 0.00 0.00 2.87
3387 3522 2.032071 CGGGGTTTGAGGCGTCTT 59.968 61.111 8.06 0.00 0.00 3.01
3388 3523 4.016706 CCGGGGTTTGAGGCGTCT 62.017 66.667 8.06 0.00 0.00 4.18
3406 3541 2.809861 AAGATGTGTCAGGCCAGGCG 62.810 60.000 5.01 0.00 0.00 5.52
3407 3542 1.001641 AAGATGTGTCAGGCCAGGC 60.002 57.895 5.01 1.26 0.00 4.85
3408 3543 1.310933 GCAAGATGTGTCAGGCCAGG 61.311 60.000 5.01 0.00 0.00 4.45
3409 3544 0.322277 AGCAAGATGTGTCAGGCCAG 60.322 55.000 5.01 0.00 0.00 4.85
3410 3545 0.111061 AAGCAAGATGTGTCAGGCCA 59.889 50.000 5.01 0.00 0.00 5.36
3411 3546 0.524862 CAAGCAAGATGTGTCAGGCC 59.475 55.000 0.00 0.00 0.00 5.19
3412 3547 0.109412 GCAAGCAAGATGTGTCAGGC 60.109 55.000 0.00 0.00 0.00 4.85
3413 3548 1.068748 GTGCAAGCAAGATGTGTCAGG 60.069 52.381 0.00 0.00 0.00 3.86
3414 3549 1.878088 AGTGCAAGCAAGATGTGTCAG 59.122 47.619 0.00 0.00 0.00 3.51
3415 3550 1.605232 CAGTGCAAGCAAGATGTGTCA 59.395 47.619 0.00 0.00 0.00 3.58
3416 3551 1.875514 TCAGTGCAAGCAAGATGTGTC 59.124 47.619 0.00 0.00 0.00 3.67
3417 3552 1.971481 TCAGTGCAAGCAAGATGTGT 58.029 45.000 0.00 0.00 0.00 3.72
3418 3553 2.551032 TCTTCAGTGCAAGCAAGATGTG 59.449 45.455 0.00 0.00 0.00 3.21
3419 3554 2.551459 GTCTTCAGTGCAAGCAAGATGT 59.449 45.455 0.00 0.00 0.00 3.06
3420 3555 2.412455 CGTCTTCAGTGCAAGCAAGATG 60.412 50.000 0.00 6.66 0.00 2.90
3421 3556 1.802960 CGTCTTCAGTGCAAGCAAGAT 59.197 47.619 0.00 0.00 0.00 2.40
3443 3578 2.742372 CAGACGCCGGGGTTTGAG 60.742 66.667 31.21 15.68 0.00 3.02
3457 3592 2.818169 GGGTGTGTGTCAGGCCAGA 61.818 63.158 5.01 0.00 0.00 3.86
3479 3614 2.743538 GCCACATCGCACAGCTGA 60.744 61.111 23.35 0.00 0.00 4.26
3480 3615 2.132517 TTTGCCACATCGCACAGCTG 62.133 55.000 13.48 13.48 38.83 4.24
3481 3616 1.246056 ATTTGCCACATCGCACAGCT 61.246 50.000 0.00 0.00 38.83 4.24
3482 3617 0.388907 AATTTGCCACATCGCACAGC 60.389 50.000 0.00 0.00 38.83 4.40
3483 3618 2.068837 AAATTTGCCACATCGCACAG 57.931 45.000 0.00 0.00 38.83 3.66
3484 3619 2.133553 CAAAATTTGCCACATCGCACA 58.866 42.857 0.00 0.00 38.83 4.57
3485 3620 2.859870 CAAAATTTGCCACATCGCAC 57.140 45.000 0.00 0.00 38.83 5.34
3521 3656 2.093306 TGTAGACGCCATGGTCTTTG 57.907 50.000 14.67 1.13 44.65 2.77
3551 3686 8.138365 TCTCTGGTTAAAAATCATATACGCAC 57.862 34.615 0.00 0.00 0.00 5.34
3553 3688 9.042008 TCTTCTCTGGTTAAAAATCATATACGC 57.958 33.333 0.00 0.00 0.00 4.42
3576 3711 5.001232 ACTTTGGTACGCATGTGTTATCTT 58.999 37.500 18.51 0.00 0.00 2.40
3617 3752 2.317149 ATAAGTCTCGCTGCAGGGCC 62.317 60.000 25.01 14.84 0.00 5.80
3673 3808 3.134623 TCATCGGTTAGCCTGATGACAAT 59.865 43.478 20.65 0.00 43.20 2.71
3690 3825 3.403613 TCGACATGGCAAATTTCATCG 57.596 42.857 0.00 0.00 0.00 3.84
3705 6415 1.231958 GCCCAATTGACCGTTCGACA 61.232 55.000 7.12 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.