Multiple sequence alignment - TraesCS6D01G207100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G207100 chr6D 100.000 4226 0 0 1 4226 292716859 292721084 0.000000e+00 7805.0
1 TraesCS6D01G207100 chr6A 92.720 3640 139 47 157 3710 429398619 429395020 0.000000e+00 5138.0
2 TraesCS6D01G207100 chr6A 91.772 158 6 3 3797 3952 429394808 429394656 3.310000e-51 213.0
3 TraesCS6D01G207100 chr6A 94.643 56 3 0 3708 3763 429394860 429394805 2.090000e-13 87.9
4 TraesCS6D01G207100 chr6B 94.884 1681 66 8 2042 3710 457170127 457171799 0.000000e+00 2610.0
5 TraesCS6D01G207100 chr6B 89.902 1931 87 33 137 2006 457168249 457170132 0.000000e+00 2386.0
6 TraesCS6D01G207100 chr6B 91.318 311 12 5 3708 4015 457171922 457172220 1.090000e-110 411.0
7 TraesCS6D01G207100 chr6B 87.065 201 21 5 4027 4224 14875041 14875239 5.500000e-54 222.0
8 TraesCS6D01G207100 chr7D 93.814 194 10 2 4033 4224 183230891 183230698 1.490000e-74 291.0
9 TraesCS6D01G207100 chr7D 89.764 127 12 1 4027 4152 183227754 183227880 1.220000e-35 161.0
10 TraesCS6D01G207100 chr7D 84.058 138 18 4 4 139 51711880 51711745 3.430000e-26 130.0
11 TraesCS6D01G207100 chr4A 88.000 200 23 1 4026 4224 648140550 648140351 7.060000e-58 235.0
12 TraesCS6D01G207100 chr2D 86.528 193 25 1 4031 4222 318572935 318573127 1.190000e-50 211.0
13 TraesCS6D01G207100 chr2D 83.459 133 22 0 6 138 619627226 619627094 1.600000e-24 124.0
14 TraesCS6D01G207100 chr1D 82.234 197 29 2 4024 4219 137884959 137884768 9.400000e-37 165.0
15 TraesCS6D01G207100 chr1D 86.765 136 18 0 4 139 339322793 339322928 7.320000e-33 152.0
16 TraesCS6D01G207100 chr1D 86.029 136 19 0 4 139 454515399 454515264 3.400000e-31 147.0
17 TraesCS6D01G207100 chr1D 83.942 137 22 0 3 139 465939483 465939619 9.530000e-27 132.0
18 TraesCS6D01G207100 chr3B 83.871 155 22 3 4024 4176 21951664 21951511 1.220000e-30 145.0
19 TraesCS6D01G207100 chr3B 80.864 162 30 1 4024 4184 478014694 478014855 4.440000e-25 126.0
20 TraesCS6D01G207100 chr3D 86.047 129 18 0 3 131 423836305 423836177 5.700000e-29 139.0
21 TraesCS6D01G207100 chr5D 84.559 136 21 0 3 138 531268283 531268148 7.370000e-28 135.0
22 TraesCS6D01G207100 chr5D 85.385 130 17 2 11 139 530645081 530645209 2.650000e-27 134.0
23 TraesCS6D01G207100 chr5D 83.824 136 22 0 3 138 505026464 505026599 3.430000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G207100 chr6D 292716859 292721084 4225 False 7805.000000 7805 100.000000 1 4226 1 chr6D.!!$F1 4225
1 TraesCS6D01G207100 chr6A 429394656 429398619 3963 True 1812.966667 5138 93.045000 157 3952 3 chr6A.!!$R1 3795
2 TraesCS6D01G207100 chr6B 457168249 457172220 3971 False 1802.333333 2610 92.034667 137 4015 3 chr6B.!!$F2 3878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 983 0.099082 CTCGTCCTCCTGCGTCTAAC 59.901 60.0 0.00 0.00 0.0 2.34 F
1410 1494 0.108615 AGGTCGATCTGCCAGTTTCG 60.109 55.0 0.00 11.72 0.0 3.46 F
2685 2774 0.324091 AGCAAAGGAATGAGGGCCAG 60.324 55.0 6.18 0.00 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2928 3017 0.319555 CCGACGACCACACATTCTGT 60.320 55.000 0.00 0.0 0.0 3.41 R
2952 3041 1.066858 TCCTCGAGAATTGGTGTGCTC 60.067 52.381 15.71 0.0 0.0 4.26 R
4144 4419 0.168128 CCGAGGTTCATGGCGTTTTC 59.832 55.000 0.00 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.024871 GTCGATCCGACGGCTGAG 59.975 66.667 9.66 0.39 46.56 3.35
24 25 3.209812 TCGATCCGACGGCTGAGG 61.210 66.667 9.66 2.00 0.00 3.86
25 26 3.518998 CGATCCGACGGCTGAGGT 61.519 66.667 9.66 0.00 0.00 3.85
26 27 2.413765 GATCCGACGGCTGAGGTC 59.586 66.667 9.66 0.00 0.00 3.85
33 34 4.135153 CGGCTGAGGTCGTCCAGG 62.135 72.222 0.51 0.00 35.65 4.45
34 35 2.680352 GGCTGAGGTCGTCCAGGA 60.680 66.667 0.51 0.00 35.89 3.86
35 36 2.716017 GGCTGAGGTCGTCCAGGAG 61.716 68.421 0.51 0.00 35.89 3.69
36 37 2.888863 CTGAGGTCGTCCAGGAGC 59.111 66.667 0.51 0.00 35.89 4.70
37 38 1.979155 CTGAGGTCGTCCAGGAGCA 60.979 63.158 0.51 0.00 36.90 4.26
38 39 1.533033 TGAGGTCGTCCAGGAGCAA 60.533 57.895 0.51 0.00 36.90 3.91
39 40 1.216710 GAGGTCGTCCAGGAGCAAG 59.783 63.158 0.51 0.00 36.90 4.01
40 41 1.228894 AGGTCGTCCAGGAGCAAGA 60.229 57.895 0.51 0.00 36.90 3.02
41 42 0.616111 AGGTCGTCCAGGAGCAAGAT 60.616 55.000 0.51 0.00 36.90 2.40
42 43 0.179097 GGTCGTCCAGGAGCAAGATC 60.179 60.000 0.00 0.00 34.64 2.75
43 44 0.179097 GTCGTCCAGGAGCAAGATCC 60.179 60.000 0.00 0.00 39.89 3.36
50 51 3.969995 GGAGCAAGATCCTACGGTC 57.030 57.895 0.00 0.00 36.35 4.79
51 52 0.389757 GGAGCAAGATCCTACGGTCC 59.610 60.000 0.00 4.40 38.72 4.46
52 53 1.112113 GAGCAAGATCCTACGGTCCA 58.888 55.000 0.00 0.00 0.00 4.02
53 54 1.480954 GAGCAAGATCCTACGGTCCAA 59.519 52.381 0.00 0.00 0.00 3.53
54 55 1.906574 AGCAAGATCCTACGGTCCAAA 59.093 47.619 0.00 0.00 0.00 3.28
55 56 2.304761 AGCAAGATCCTACGGTCCAAAA 59.695 45.455 0.00 0.00 0.00 2.44
56 57 2.418976 GCAAGATCCTACGGTCCAAAAC 59.581 50.000 0.00 0.00 0.00 2.43
57 58 2.667473 AGATCCTACGGTCCAAAACG 57.333 50.000 0.00 0.00 0.00 3.60
58 59 1.004595 GATCCTACGGTCCAAAACGC 58.995 55.000 0.00 0.00 0.00 4.84
59 60 0.322322 ATCCTACGGTCCAAAACGCA 59.678 50.000 0.00 0.00 0.00 5.24
60 61 0.322322 TCCTACGGTCCAAAACGCAT 59.678 50.000 0.00 0.00 0.00 4.73
61 62 0.725117 CCTACGGTCCAAAACGCATC 59.275 55.000 0.00 0.00 0.00 3.91
62 63 1.434555 CTACGGTCCAAAACGCATCA 58.565 50.000 0.00 0.00 0.00 3.07
63 64 1.801771 CTACGGTCCAAAACGCATCAA 59.198 47.619 0.00 0.00 0.00 2.57
64 65 0.591170 ACGGTCCAAAACGCATCAAG 59.409 50.000 0.00 0.00 0.00 3.02
65 66 0.591170 CGGTCCAAAACGCATCAAGT 59.409 50.000 0.00 0.00 0.00 3.16
66 67 1.801771 CGGTCCAAAACGCATCAAGTA 59.198 47.619 0.00 0.00 0.00 2.24
67 68 2.224549 CGGTCCAAAACGCATCAAGTAA 59.775 45.455 0.00 0.00 0.00 2.24
68 69 3.304123 CGGTCCAAAACGCATCAAGTAAA 60.304 43.478 0.00 0.00 0.00 2.01
69 70 3.978855 GGTCCAAAACGCATCAAGTAAAC 59.021 43.478 0.00 0.00 0.00 2.01
70 71 3.662186 GTCCAAAACGCATCAAGTAAACG 59.338 43.478 0.00 0.00 0.00 3.60
71 72 3.560481 TCCAAAACGCATCAAGTAAACGA 59.440 39.130 0.00 0.00 0.00 3.85
72 73 4.214545 TCCAAAACGCATCAAGTAAACGAT 59.785 37.500 0.00 0.00 0.00 3.73
73 74 4.553429 CCAAAACGCATCAAGTAAACGATC 59.447 41.667 0.00 0.00 0.00 3.69
74 75 4.336532 AAACGCATCAAGTAAACGATCC 57.663 40.909 0.00 0.00 0.00 3.36
75 76 1.924524 ACGCATCAAGTAAACGATCCG 59.075 47.619 0.00 0.00 0.00 4.18
76 77 2.190161 CGCATCAAGTAAACGATCCGA 58.810 47.619 0.00 0.00 0.00 4.55
77 78 2.034842 CGCATCAAGTAAACGATCCGAC 60.035 50.000 0.00 0.00 0.00 4.79
78 79 2.034842 GCATCAAGTAAACGATCCGACG 60.035 50.000 0.00 0.00 39.31 5.12
79 80 2.267188 TCAAGTAAACGATCCGACGG 57.733 50.000 7.84 7.84 37.61 4.79
80 81 0.643820 CAAGTAAACGATCCGACGGC 59.356 55.000 9.66 0.00 37.61 5.68
81 82 0.459063 AAGTAAACGATCCGACGGCC 60.459 55.000 9.66 2.30 37.61 6.13
82 83 1.153784 GTAAACGATCCGACGGCCA 60.154 57.895 9.66 0.00 37.61 5.36
83 84 0.737019 GTAAACGATCCGACGGCCAA 60.737 55.000 9.66 0.00 37.61 4.52
84 85 0.176219 TAAACGATCCGACGGCCAAT 59.824 50.000 9.66 0.00 37.61 3.16
85 86 0.176219 AAACGATCCGACGGCCAATA 59.824 50.000 9.66 0.00 37.61 1.90
86 87 0.176219 AACGATCCGACGGCCAATAA 59.824 50.000 9.66 0.00 37.61 1.40
87 88 0.391597 ACGATCCGACGGCCAATAAT 59.608 50.000 9.66 0.00 37.61 1.28
88 89 1.068474 CGATCCGACGGCCAATAATC 58.932 55.000 9.66 4.95 0.00 1.75
89 90 1.068474 GATCCGACGGCCAATAATCG 58.932 55.000 9.66 3.36 0.00 3.34
90 91 0.949105 ATCCGACGGCCAATAATCGC 60.949 55.000 9.66 0.00 33.25 4.58
91 92 1.594293 CCGACGGCCAATAATCGCT 60.594 57.895 2.24 0.00 33.25 4.93
92 93 1.564622 CGACGGCCAATAATCGCTG 59.435 57.895 2.24 0.00 37.39 5.18
93 94 0.874175 CGACGGCCAATAATCGCTGA 60.874 55.000 2.24 0.00 35.28 4.26
94 95 0.861837 GACGGCCAATAATCGCTGAG 59.138 55.000 2.24 0.00 35.28 3.35
95 96 1.160329 ACGGCCAATAATCGCTGAGC 61.160 55.000 2.24 0.00 35.28 4.26
96 97 0.882042 CGGCCAATAATCGCTGAGCT 60.882 55.000 2.24 0.00 32.89 4.09
97 98 1.605457 CGGCCAATAATCGCTGAGCTA 60.605 52.381 2.24 0.00 32.89 3.32
98 99 2.704572 GGCCAATAATCGCTGAGCTAT 58.295 47.619 1.78 0.00 0.00 2.97
99 100 2.417933 GGCCAATAATCGCTGAGCTATG 59.582 50.000 1.78 0.00 0.00 2.23
100 101 3.329386 GCCAATAATCGCTGAGCTATGA 58.671 45.455 1.78 0.00 0.00 2.15
101 102 3.370366 GCCAATAATCGCTGAGCTATGAG 59.630 47.826 1.78 0.00 0.00 2.90
102 103 4.814147 CCAATAATCGCTGAGCTATGAGA 58.186 43.478 1.78 0.00 0.00 3.27
103 104 5.233225 CCAATAATCGCTGAGCTATGAGAA 58.767 41.667 1.78 0.00 0.00 2.87
104 105 5.119898 CCAATAATCGCTGAGCTATGAGAAC 59.880 44.000 1.78 0.00 0.00 3.01
105 106 2.414058 ATCGCTGAGCTATGAGAACG 57.586 50.000 1.78 0.00 0.00 3.95
106 107 0.248661 TCGCTGAGCTATGAGAACGC 60.249 55.000 1.78 0.00 0.00 4.84
107 108 1.535636 CGCTGAGCTATGAGAACGCG 61.536 60.000 3.53 3.53 0.00 6.01
108 109 0.526524 GCTGAGCTATGAGAACGCGT 60.527 55.000 5.58 5.58 0.00 6.01
109 110 1.268589 GCTGAGCTATGAGAACGCGTA 60.269 52.381 14.46 0.00 0.00 4.42
110 111 2.605823 GCTGAGCTATGAGAACGCGTAT 60.606 50.000 14.46 3.81 0.00 3.06
111 112 2.976509 CTGAGCTATGAGAACGCGTATG 59.023 50.000 14.46 0.00 0.00 2.39
112 113 2.357952 TGAGCTATGAGAACGCGTATGT 59.642 45.455 14.46 0.00 0.00 2.29
113 114 3.181490 TGAGCTATGAGAACGCGTATGTT 60.181 43.478 14.46 0.00 34.02 2.71
114 115 3.372954 AGCTATGAGAACGCGTATGTTC 58.627 45.455 14.46 6.32 46.78 3.18
119 120 3.429043 GAACGCGTATGTTCTCCCA 57.571 52.632 14.46 0.00 43.82 4.37
120 121 1.717194 GAACGCGTATGTTCTCCCAA 58.283 50.000 14.46 0.00 43.82 4.12
121 122 1.392510 GAACGCGTATGTTCTCCCAAC 59.607 52.381 14.46 0.00 43.82 3.77
122 123 0.606604 ACGCGTATGTTCTCCCAACT 59.393 50.000 11.67 0.00 0.00 3.16
123 124 1.820519 ACGCGTATGTTCTCCCAACTA 59.179 47.619 11.67 0.00 0.00 2.24
124 125 2.231964 ACGCGTATGTTCTCCCAACTAA 59.768 45.455 11.67 0.00 0.00 2.24
125 126 2.601763 CGCGTATGTTCTCCCAACTAAC 59.398 50.000 0.00 0.00 0.00 2.34
126 127 3.592059 GCGTATGTTCTCCCAACTAACA 58.408 45.455 0.00 0.00 37.51 2.41
127 128 4.189231 GCGTATGTTCTCCCAACTAACAT 58.811 43.478 0.00 0.00 44.01 2.71
128 129 5.353938 GCGTATGTTCTCCCAACTAACATA 58.646 41.667 0.00 0.00 42.31 2.29
129 130 5.462398 GCGTATGTTCTCCCAACTAACATAG 59.538 44.000 7.24 4.43 43.23 2.23
130 131 6.570692 CGTATGTTCTCCCAACTAACATAGT 58.429 40.000 7.24 0.00 43.23 2.12
132 133 7.222224 CGTATGTTCTCCCAACTAACATAGTTC 59.778 40.741 7.24 0.00 45.38 3.01
133 134 6.681729 TGTTCTCCCAACTAACATAGTTCT 57.318 37.500 0.00 0.00 45.38 3.01
134 135 6.464222 TGTTCTCCCAACTAACATAGTTCTG 58.536 40.000 0.00 0.00 45.38 3.02
135 136 5.677319 TCTCCCAACTAACATAGTTCTGG 57.323 43.478 0.00 4.87 45.38 3.86
218 219 1.068055 CAGCTTTCATTTTCGCTGGCT 60.068 47.619 0.00 0.00 44.48 4.75
220 221 1.887320 CTTTCATTTTCGCTGGCTCG 58.113 50.000 0.00 0.00 0.00 5.03
245 255 1.271926 GCATACGGCCCCTAATCCATT 60.272 52.381 0.00 0.00 36.11 3.16
246 256 2.817839 GCATACGGCCCCTAATCCATTT 60.818 50.000 0.00 0.00 36.11 2.32
283 293 2.334838 GGTTAGTTAGTCCACGCACTG 58.665 52.381 0.00 0.00 0.00 3.66
309 327 1.456705 AGGACCCGCAAAGCCAAAA 60.457 52.632 0.00 0.00 0.00 2.44
310 328 1.006220 GGACCCGCAAAGCCAAAAG 60.006 57.895 0.00 0.00 0.00 2.27
311 329 1.664649 GACCCGCAAAGCCAAAAGC 60.665 57.895 0.00 0.00 44.25 3.51
932 982 1.030488 CCTCGTCCTCCTGCGTCTAA 61.030 60.000 0.00 0.00 0.00 2.10
933 983 0.099082 CTCGTCCTCCTGCGTCTAAC 59.901 60.000 0.00 0.00 0.00 2.34
964 1016 1.522580 GGGCTCTGCTGATTCGTCC 60.523 63.158 0.00 0.00 0.00 4.79
992 1068 4.954118 ACGGGTGACTGCCTGGGA 62.954 66.667 0.00 0.00 41.93 4.37
1239 1317 3.909776 GCCGTTGGCCTTATTATTACC 57.090 47.619 3.32 0.00 44.06 2.85
1260 1338 6.869206 ACCAGTACAACTAGTATCACCATT 57.131 37.500 0.00 0.00 34.67 3.16
1398 1482 2.123251 ATCCTGGCCGAGGTCGAT 60.123 61.111 17.55 5.07 43.37 3.59
1407 1491 1.513158 CGAGGTCGATCTGCCAGTT 59.487 57.895 0.91 0.00 43.02 3.16
1410 1494 0.108615 AGGTCGATCTGCCAGTTTCG 60.109 55.000 0.00 11.72 0.00 3.46
1452 1536 1.915141 ACATTGGCAGGAACAAGGAG 58.085 50.000 0.00 0.00 34.12 3.69
1461 1545 2.034687 AACAAGGAGCTGCGCCAT 59.965 55.556 24.28 10.02 0.00 4.40
1493 1577 2.972713 TCAGTAAGCTGTCTCCCAGTTT 59.027 45.455 0.00 0.00 45.34 2.66
1513 1597 6.430925 CAGTTTCCATAGTTCTGTCCAATTCA 59.569 38.462 0.00 0.00 0.00 2.57
1516 1600 4.883585 TCCATAGTTCTGTCCAATTCATGC 59.116 41.667 0.00 0.00 0.00 4.06
1547 1631 5.366829 TGTAGTGATGATATTCGTACGGG 57.633 43.478 16.52 0.00 0.00 5.28
1548 1632 3.299340 AGTGATGATATTCGTACGGGC 57.701 47.619 16.52 1.36 0.00 6.13
1553 1637 1.210870 GATATTCGTACGGGCGCAAA 58.789 50.000 16.52 0.88 0.00 3.68
1790 1875 8.673711 GGTCATTGCTGTACTGTTTATGAATTA 58.326 33.333 11.87 0.00 0.00 1.40
1863 1948 8.908786 ACTTCTTCATTGACAATCTTGAGTTA 57.091 30.769 0.00 0.00 0.00 2.24
2032 2117 5.145564 TGTAGGAAGTTCTACAACTGTCCT 58.854 41.667 14.34 14.34 44.40 3.85
2064 2149 8.701895 TGGTTTTCTCTTTCTTTCTCTGTAGTA 58.298 33.333 0.00 0.00 0.00 1.82
2098 2183 0.600057 TGTTGCCGCAAATATGTGCA 59.400 45.000 17.97 0.00 45.19 4.57
2105 2190 3.862267 GCCGCAAATATGTGCATTTTACA 59.138 39.130 17.97 0.00 45.19 2.41
2117 2204 4.320690 GTGCATTTTACAACATGCTGTACG 59.679 41.667 8.46 0.29 45.21 3.67
2146 2233 2.925578 TGCTCATTGCTGTGCATTAC 57.074 45.000 0.00 0.00 44.52 1.89
2147 2234 1.473677 TGCTCATTGCTGTGCATTACC 59.526 47.619 0.00 0.00 44.52 2.85
2180 2268 6.916360 AAACCCTTGCTTTTCTTATCATCA 57.084 33.333 0.00 0.00 0.00 3.07
2202 2290 1.915769 GTCTCCTGCTGTGGACCCT 60.916 63.158 0.00 0.00 31.94 4.34
2205 2293 2.930019 CCTGCTGTGGACCCTCCA 60.930 66.667 0.00 0.00 45.98 3.86
2326 2414 3.328382 TGTTTTGTCCCCTCTCATACG 57.672 47.619 0.00 0.00 0.00 3.06
2348 2436 5.007823 ACGACCTACTCATTCATAGTTCTCG 59.992 44.000 0.00 0.00 0.00 4.04
2350 2438 5.446860 ACCTACTCATTCATAGTTCTCGGA 58.553 41.667 0.00 0.00 0.00 4.55
2352 2440 5.299531 CCTACTCATTCATAGTTCTCGGACA 59.700 44.000 0.00 0.00 0.00 4.02
2436 2525 5.837437 ACTAATTTGAGGATAGCTGAGTCG 58.163 41.667 0.00 0.00 0.00 4.18
2523 2612 6.303839 ACAGAGAGAGGGTAATCAGATAGAC 58.696 44.000 0.00 0.00 0.00 2.59
2685 2774 0.324091 AGCAAAGGAATGAGGGCCAG 60.324 55.000 6.18 0.00 0.00 4.85
2758 2847 1.072806 GGATGGTAGAGCATGGCATGA 59.927 52.381 30.69 8.47 0.00 3.07
2928 3017 5.042593 GTGCATTCAAGTCATTTGTCAACA 58.957 37.500 0.00 0.00 38.01 3.33
2952 3041 0.099968 ATGTGTGGTCGTCGGTATCG 59.900 55.000 0.00 0.00 37.82 2.92
2966 3055 2.738643 CGGTATCGAGCACACCAATTCT 60.739 50.000 0.00 0.00 39.00 2.40
3171 3260 7.443575 AGCACTGGTGATGATATTTCTGAATAC 59.556 37.037 4.79 0.00 30.87 1.89
3249 3338 5.408604 GCTGAAAGGTCGTATTATATGTGGG 59.591 44.000 0.00 0.00 0.00 4.61
3254 3347 5.391256 AGGTCGTATTATATGTGGGAGTGA 58.609 41.667 0.00 0.00 0.00 3.41
3290 3383 2.634600 ACTTTGCAACTCGGTACACAA 58.365 42.857 0.00 0.00 0.00 3.33
3298 3391 3.829886 ACTCGGTACACAAATGCAATG 57.170 42.857 0.00 0.00 0.00 2.82
3375 3469 2.628178 CCCAACCCCTCAAAAGAACTTC 59.372 50.000 0.00 0.00 0.00 3.01
3482 3576 5.106038 ACATGGCATTGTGACAAACTCTATG 60.106 40.000 0.62 10.15 39.86 2.23
3525 3621 7.385205 GCTTGTCTAGTTTCATTGTCTCTGTTA 59.615 37.037 0.00 0.00 0.00 2.41
3666 3767 5.396070 CGAAAGTTGCAAAATTGGAAATTGC 59.604 36.000 12.55 10.26 43.95 3.56
3764 4036 0.617413 AGGCAAGGTGAGGATGTCAG 59.383 55.000 0.00 0.00 35.13 3.51
3783 4055 3.259374 TCAGCCCCATTTGCGAATAAAAA 59.741 39.130 0.00 0.00 0.00 1.94
3812 4084 7.451255 AGCATAGTGTTATCTTCTCTAGCTCAT 59.549 37.037 0.00 0.00 0.00 2.90
3813 4085 8.735315 GCATAGTGTTATCTTCTCTAGCTCATA 58.265 37.037 0.00 0.00 0.00 2.15
3815 4087 9.800572 ATAGTGTTATCTTCTCTAGCTCATACA 57.199 33.333 0.00 0.00 0.00 2.29
3816 4088 8.526667 AGTGTTATCTTCTCTAGCTCATACAA 57.473 34.615 0.00 0.00 0.00 2.41
3919 4193 7.716998 CCATTAAGATGACTGGCATAAACTACT 59.283 37.037 0.00 0.00 37.34 2.57
3986 4261 3.691049 AAAACACACATCGACAGTTGG 57.309 42.857 0.00 0.00 0.00 3.77
3990 4265 0.034896 ACACATCGACAGTTGGTCCC 59.965 55.000 0.00 0.00 43.95 4.46
4010 4285 5.652452 GTCCCCTAGTGCTTATGTTTTTGAT 59.348 40.000 0.00 0.00 0.00 2.57
4015 4290 8.739972 CCCTAGTGCTTATGTTTTTGATAAGTT 58.260 33.333 0.00 0.00 36.27 2.66
4026 4301 7.947282 TGTTTTTGATAAGTTAGAAACAGGGG 58.053 34.615 10.25 0.00 33.55 4.79
4027 4302 7.780745 TGTTTTTGATAAGTTAGAAACAGGGGA 59.219 33.333 10.25 0.00 33.55 4.81
4028 4303 7.754851 TTTTGATAAGTTAGAAACAGGGGAC 57.245 36.000 0.00 0.00 0.00 4.46
4029 4304 6.697641 TTGATAAGTTAGAAACAGGGGACT 57.302 37.500 0.00 0.00 46.44 3.85
4030 4305 6.697641 TGATAAGTTAGAAACAGGGGACTT 57.302 37.500 0.00 0.00 40.21 3.01
4031 4306 7.086685 TGATAAGTTAGAAACAGGGGACTTT 57.913 36.000 0.00 0.00 40.21 2.66
4032 4307 7.523415 TGATAAGTTAGAAACAGGGGACTTTT 58.477 34.615 0.00 0.00 40.21 2.27
4033 4308 8.002459 TGATAAGTTAGAAACAGGGGACTTTTT 58.998 33.333 0.00 0.00 42.79 1.94
4039 4314 3.382083 AACAGGGGACTTTTTCACTGT 57.618 42.857 0.00 0.00 42.56 3.55
4040 4315 3.382083 ACAGGGGACTTTTTCACTGTT 57.618 42.857 0.00 0.00 39.60 3.16
4041 4316 3.288092 ACAGGGGACTTTTTCACTGTTC 58.712 45.455 0.00 0.00 39.60 3.18
4042 4317 3.053619 ACAGGGGACTTTTTCACTGTTCT 60.054 43.478 0.00 0.00 39.60 3.01
4043 4318 4.165372 ACAGGGGACTTTTTCACTGTTCTA 59.835 41.667 0.00 0.00 39.60 2.10
4044 4319 5.130350 CAGGGGACTTTTTCACTGTTCTAA 58.870 41.667 0.00 0.00 40.21 2.10
4045 4320 5.008712 CAGGGGACTTTTTCACTGTTCTAAC 59.991 44.000 0.00 0.00 40.21 2.34
4046 4321 4.277672 GGGGACTTTTTCACTGTTCTAACC 59.722 45.833 0.00 0.00 0.00 2.85
4047 4322 4.277672 GGGACTTTTTCACTGTTCTAACCC 59.722 45.833 0.00 0.00 0.00 4.11
4048 4323 4.024302 GGACTTTTTCACTGTTCTAACCCG 60.024 45.833 0.00 0.00 0.00 5.28
4049 4324 4.520179 ACTTTTTCACTGTTCTAACCCGT 58.480 39.130 0.00 0.00 0.00 5.28
4050 4325 4.945543 ACTTTTTCACTGTTCTAACCCGTT 59.054 37.500 0.00 0.00 0.00 4.44
4051 4326 5.416639 ACTTTTTCACTGTTCTAACCCGTTT 59.583 36.000 0.00 0.00 0.00 3.60
4052 4327 4.886247 TTTCACTGTTCTAACCCGTTTG 57.114 40.909 0.00 0.00 0.00 2.93
4053 4328 2.215196 TCACTGTTCTAACCCGTTTGC 58.785 47.619 0.00 0.00 0.00 3.68
4054 4329 2.158871 TCACTGTTCTAACCCGTTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
4055 4330 2.032030 CACTGTTCTAACCCGTTTGCTG 60.032 50.000 0.00 0.00 0.00 4.41
4056 4331 2.158871 ACTGTTCTAACCCGTTTGCTGA 60.159 45.455 0.00 0.00 0.00 4.26
4057 4332 2.875933 CTGTTCTAACCCGTTTGCTGAA 59.124 45.455 0.00 0.00 0.00 3.02
4058 4333 2.875933 TGTTCTAACCCGTTTGCTGAAG 59.124 45.455 0.00 0.00 0.00 3.02
4059 4334 2.876550 GTTCTAACCCGTTTGCTGAAGT 59.123 45.455 0.00 0.00 0.00 3.01
4060 4335 3.202829 TCTAACCCGTTTGCTGAAGTT 57.797 42.857 0.00 0.00 0.00 2.66
4061 4336 3.547746 TCTAACCCGTTTGCTGAAGTTT 58.452 40.909 0.00 0.00 0.00 2.66
4062 4337 4.706035 TCTAACCCGTTTGCTGAAGTTTA 58.294 39.130 0.00 0.00 0.00 2.01
4063 4338 3.982576 AACCCGTTTGCTGAAGTTTAG 57.017 42.857 0.00 0.00 0.00 1.85
4064 4339 1.607148 ACCCGTTTGCTGAAGTTTAGC 59.393 47.619 12.50 12.50 41.49 3.09
4071 4346 3.811722 TGCTGAAGTTTAGCACGATTG 57.188 42.857 17.63 0.00 45.52 2.67
4072 4347 3.398406 TGCTGAAGTTTAGCACGATTGA 58.602 40.909 17.63 0.00 45.52 2.57
4073 4348 3.186409 TGCTGAAGTTTAGCACGATTGAC 59.814 43.478 17.63 0.00 45.52 3.18
4074 4349 3.424962 GCTGAAGTTTAGCACGATTGACC 60.425 47.826 14.34 0.00 40.81 4.02
4075 4350 3.071479 TGAAGTTTAGCACGATTGACCC 58.929 45.455 0.00 0.00 0.00 4.46
4076 4351 2.851263 AGTTTAGCACGATTGACCCA 57.149 45.000 0.00 0.00 0.00 4.51
4077 4352 3.350219 AGTTTAGCACGATTGACCCAT 57.650 42.857 0.00 0.00 0.00 4.00
4078 4353 3.009723 AGTTTAGCACGATTGACCCATG 58.990 45.455 0.00 0.00 0.00 3.66
4079 4354 2.747446 GTTTAGCACGATTGACCCATGT 59.253 45.455 0.00 0.00 0.00 3.21
4080 4355 2.779755 TAGCACGATTGACCCATGTT 57.220 45.000 0.00 0.00 0.00 2.71
4081 4356 1.909700 AGCACGATTGACCCATGTTT 58.090 45.000 0.00 0.00 0.00 2.83
4082 4357 1.541147 AGCACGATTGACCCATGTTTG 59.459 47.619 0.00 0.00 0.00 2.93
4083 4358 1.539388 GCACGATTGACCCATGTTTGA 59.461 47.619 0.00 0.00 0.00 2.69
4084 4359 2.030363 GCACGATTGACCCATGTTTGAA 60.030 45.455 0.00 0.00 0.00 2.69
4085 4360 3.551863 GCACGATTGACCCATGTTTGAAA 60.552 43.478 0.00 0.00 0.00 2.69
4086 4361 4.229096 CACGATTGACCCATGTTTGAAAG 58.771 43.478 0.00 0.00 0.00 2.62
4087 4362 3.888930 ACGATTGACCCATGTTTGAAAGT 59.111 39.130 0.00 0.00 0.00 2.66
4088 4363 4.340950 ACGATTGACCCATGTTTGAAAGTT 59.659 37.500 0.00 0.00 0.00 2.66
4089 4364 5.163457 ACGATTGACCCATGTTTGAAAGTTT 60.163 36.000 0.00 0.00 0.00 2.66
4090 4365 5.752955 CGATTGACCCATGTTTGAAAGTTTT 59.247 36.000 0.00 0.00 0.00 2.43
4091 4366 6.257630 CGATTGACCCATGTTTGAAAGTTTTT 59.742 34.615 0.00 0.00 0.00 1.94
4110 4385 3.712016 TTTCGGATCTGACCCATTTCA 57.288 42.857 2.94 0.00 0.00 2.69
4111 4386 3.712016 TTCGGATCTGACCCATTTCAA 57.288 42.857 2.94 0.00 0.00 2.69
4112 4387 3.712016 TCGGATCTGACCCATTTCAAA 57.288 42.857 0.00 0.00 0.00 2.69
4113 4388 4.027674 TCGGATCTGACCCATTTCAAAA 57.972 40.909 0.00 0.00 0.00 2.44
4114 4389 3.756434 TCGGATCTGACCCATTTCAAAAC 59.244 43.478 0.00 0.00 0.00 2.43
4115 4390 3.426159 CGGATCTGACCCATTTCAAAACG 60.426 47.826 0.00 0.00 0.00 3.60
4116 4391 3.501950 GATCTGACCCATTTCAAAACGC 58.498 45.455 0.00 0.00 0.00 4.84
4117 4392 1.611491 TCTGACCCATTTCAAAACGCC 59.389 47.619 0.00 0.00 0.00 5.68
4118 4393 1.339610 CTGACCCATTTCAAAACGCCA 59.660 47.619 0.00 0.00 0.00 5.69
4119 4394 1.757118 TGACCCATTTCAAAACGCCAA 59.243 42.857 0.00 0.00 0.00 4.52
4120 4395 2.131972 GACCCATTTCAAAACGCCAAC 58.868 47.619 0.00 0.00 0.00 3.77
4121 4396 1.482593 ACCCATTTCAAAACGCCAACA 59.517 42.857 0.00 0.00 0.00 3.33
4122 4397 2.093447 ACCCATTTCAAAACGCCAACAA 60.093 40.909 0.00 0.00 0.00 2.83
4123 4398 2.286563 CCCATTTCAAAACGCCAACAAC 59.713 45.455 0.00 0.00 0.00 3.32
4124 4399 2.286563 CCATTTCAAAACGCCAACAACC 59.713 45.455 0.00 0.00 0.00 3.77
4125 4400 2.743636 TTTCAAAACGCCAACAACCA 57.256 40.000 0.00 0.00 0.00 3.67
4126 4401 2.969628 TTCAAAACGCCAACAACCAT 57.030 40.000 0.00 0.00 0.00 3.55
4127 4402 2.215907 TCAAAACGCCAACAACCATG 57.784 45.000 0.00 0.00 0.00 3.66
4128 4403 1.202463 TCAAAACGCCAACAACCATGG 60.202 47.619 11.19 11.19 41.08 3.66
4133 4408 2.560861 CCAACAACCATGGCGTCG 59.439 61.111 13.04 0.00 0.00 5.12
4134 4409 2.258013 CCAACAACCATGGCGTCGT 61.258 57.895 13.04 0.30 0.00 4.34
4135 4410 1.082169 CAACAACCATGGCGTCGTG 60.082 57.895 13.04 1.14 0.00 4.35
4136 4411 2.903547 AACAACCATGGCGTCGTGC 61.904 57.895 13.04 0.00 45.38 5.34
4137 4412 3.049674 CAACCATGGCGTCGTGCT 61.050 61.111 13.04 0.00 45.43 4.40
4138 4413 2.281484 AACCATGGCGTCGTGCTT 60.281 55.556 13.04 0.00 45.43 3.91
4139 4414 2.616330 AACCATGGCGTCGTGCTTG 61.616 57.895 13.04 0.00 45.43 4.01
4140 4415 4.465512 CCATGGCGTCGTGCTTGC 62.466 66.667 2.97 0.00 45.43 4.01
4141 4416 3.725459 CATGGCGTCGTGCTTGCA 61.725 61.111 0.00 0.00 45.43 4.08
4142 4417 3.726517 ATGGCGTCGTGCTTGCAC 61.727 61.111 15.01 15.01 45.43 4.57
4143 4418 4.908687 TGGCGTCGTGCTTGCACT 62.909 61.111 21.17 0.00 45.43 4.40
4144 4419 4.374702 GGCGTCGTGCTTGCACTG 62.375 66.667 21.17 15.08 45.43 3.66
4145 4420 3.337889 GCGTCGTGCTTGCACTGA 61.338 61.111 21.17 16.79 41.73 3.41
4146 4421 2.881266 GCGTCGTGCTTGCACTGAA 61.881 57.895 21.17 6.28 41.73 3.02
4147 4422 1.641140 CGTCGTGCTTGCACTGAAA 59.359 52.632 21.17 4.06 0.00 2.69
4148 4423 0.027455 CGTCGTGCTTGCACTGAAAA 59.973 50.000 21.17 1.88 0.00 2.29
4149 4424 1.466855 GTCGTGCTTGCACTGAAAAC 58.533 50.000 21.17 9.32 0.00 2.43
4150 4425 0.027455 TCGTGCTTGCACTGAAAACG 59.973 50.000 21.17 8.36 0.00 3.60
4151 4426 1.531522 CGTGCTTGCACTGAAAACGC 61.532 55.000 21.17 0.00 0.00 4.84
4152 4427 1.065600 TGCTTGCACTGAAAACGCC 59.934 52.632 0.00 0.00 0.00 5.68
4153 4428 1.065600 GCTTGCACTGAAAACGCCA 59.934 52.632 0.00 0.00 0.00 5.69
4154 4429 0.318955 GCTTGCACTGAAAACGCCAT 60.319 50.000 0.00 0.00 0.00 4.40
4155 4430 1.411394 CTTGCACTGAAAACGCCATG 58.589 50.000 0.00 0.00 0.00 3.66
4156 4431 1.001487 CTTGCACTGAAAACGCCATGA 60.001 47.619 0.00 0.00 0.00 3.07
4157 4432 1.028130 TGCACTGAAAACGCCATGAA 58.972 45.000 0.00 0.00 0.00 2.57
4158 4433 1.268999 TGCACTGAAAACGCCATGAAC 60.269 47.619 0.00 0.00 0.00 3.18
4159 4434 1.930371 GCACTGAAAACGCCATGAACC 60.930 52.381 0.00 0.00 0.00 3.62
4160 4435 1.608590 CACTGAAAACGCCATGAACCT 59.391 47.619 0.00 0.00 0.00 3.50
4161 4436 1.880027 ACTGAAAACGCCATGAACCTC 59.120 47.619 0.00 0.00 0.00 3.85
4162 4437 0.871722 TGAAAACGCCATGAACCTCG 59.128 50.000 0.00 0.00 0.00 4.63
4163 4438 0.168128 GAAAACGCCATGAACCTCGG 59.832 55.000 0.00 0.00 0.00 4.63
4164 4439 1.862602 AAAACGCCATGAACCTCGGC 61.863 55.000 0.00 0.00 42.64 5.54
4167 4442 3.195698 GCCATGAACCTCGGCGTC 61.196 66.667 6.85 0.00 35.79 5.19
4168 4443 2.579201 CCATGAACCTCGGCGTCT 59.421 61.111 6.85 0.00 0.00 4.18
4169 4444 1.813859 CCATGAACCTCGGCGTCTA 59.186 57.895 6.85 0.00 0.00 2.59
4170 4445 0.249073 CCATGAACCTCGGCGTCTAG 60.249 60.000 6.85 0.00 0.00 2.43
4180 4455 3.461773 GCGTCTAGCTCTGGCCCA 61.462 66.667 0.00 0.00 44.04 5.36
4181 4456 2.496817 CGTCTAGCTCTGGCCCAC 59.503 66.667 0.00 0.00 39.73 4.61
4182 4457 2.904131 GTCTAGCTCTGGCCCACC 59.096 66.667 0.00 0.00 39.73 4.61
4183 4458 1.687493 GTCTAGCTCTGGCCCACCT 60.687 63.158 0.00 0.00 39.73 4.00
4184 4459 1.381872 TCTAGCTCTGGCCCACCTC 60.382 63.158 0.00 0.00 39.73 3.85
4185 4460 2.365635 TAGCTCTGGCCCACCTCC 60.366 66.667 0.00 0.00 39.73 4.30
4186 4461 2.887738 CTAGCTCTGGCCCACCTCCT 62.888 65.000 0.00 0.00 39.73 3.69
4187 4462 4.106925 GCTCTGGCCCACCTCCTG 62.107 72.222 0.00 0.00 36.63 3.86
4188 4463 3.406200 CTCTGGCCCACCTCCTGG 61.406 72.222 0.00 0.00 40.26 4.45
4190 4465 3.721706 CTGGCCCACCTCCTGGTC 61.722 72.222 0.00 0.00 46.60 4.02
4191 4466 4.590553 TGGCCCACCTCCTGGTCA 62.591 66.667 0.00 0.00 46.60 4.02
4192 4467 3.721706 GGCCCACCTCCTGGTCAG 61.722 72.222 0.00 0.00 46.60 3.51
4193 4468 4.416738 GCCCACCTCCTGGTCAGC 62.417 72.222 0.00 0.00 46.60 4.26
4194 4469 3.721706 CCCACCTCCTGGTCAGCC 61.722 72.222 0.00 0.00 46.60 4.85
4195 4470 3.721706 CCACCTCCTGGTCAGCCC 61.722 72.222 0.00 0.00 46.60 5.19
4196 4471 2.930019 CACCTCCTGGTCAGCCCA 60.930 66.667 0.00 0.00 46.60 5.36
4197 4472 2.121963 ACCTCCTGGTCAGCCCAA 60.122 61.111 0.00 0.00 44.78 4.12
4198 4473 1.542375 ACCTCCTGGTCAGCCCAAT 60.542 57.895 0.00 0.00 44.78 3.16
4199 4474 1.142688 ACCTCCTGGTCAGCCCAATT 61.143 55.000 0.00 0.00 44.78 2.32
4200 4475 0.682209 CCTCCTGGTCAGCCCAATTG 60.682 60.000 0.00 0.00 44.65 2.32
4201 4476 0.329261 CTCCTGGTCAGCCCAATTGA 59.671 55.000 7.12 0.00 44.65 2.57
4202 4477 0.038166 TCCTGGTCAGCCCAATTGAC 59.962 55.000 7.12 0.00 44.65 3.18
4205 4480 4.397348 GTCAGCCCAATTGACCGT 57.603 55.556 7.12 0.00 39.17 4.83
4206 4481 2.641197 GTCAGCCCAATTGACCGTT 58.359 52.632 7.12 0.00 39.17 4.44
4207 4482 0.521735 GTCAGCCCAATTGACCGTTC 59.478 55.000 7.12 0.00 39.17 3.95
4208 4483 0.953471 TCAGCCCAATTGACCGTTCG 60.953 55.000 7.12 0.00 0.00 3.95
4209 4484 0.953471 CAGCCCAATTGACCGTTCGA 60.953 55.000 7.12 0.00 0.00 3.71
4210 4485 0.953960 AGCCCAATTGACCGTTCGAC 60.954 55.000 7.12 0.00 0.00 4.20
4211 4486 1.231958 GCCCAATTGACCGTTCGACA 61.232 55.000 7.12 0.00 0.00 4.35
4212 4487 1.448985 CCCAATTGACCGTTCGACAT 58.551 50.000 7.12 0.00 0.00 3.06
4213 4488 1.130373 CCCAATTGACCGTTCGACATG 59.870 52.381 7.12 0.00 0.00 3.21
4214 4489 1.130373 CCAATTGACCGTTCGACATGG 59.870 52.381 7.12 0.00 37.62 3.66
4215 4490 0.802494 AATTGACCGTTCGACATGGC 59.198 50.000 0.00 0.00 34.31 4.40
4216 4491 0.321210 ATTGACCGTTCGACATGGCA 60.321 50.000 0.00 0.00 34.31 4.92
4217 4492 0.533085 TTGACCGTTCGACATGGCAA 60.533 50.000 0.00 7.96 34.31 4.52
4218 4493 0.533085 TGACCGTTCGACATGGCAAA 60.533 50.000 0.00 0.00 34.31 3.68
4219 4494 0.802494 GACCGTTCGACATGGCAAAT 59.198 50.000 0.00 0.00 34.31 2.32
4220 4495 1.199097 GACCGTTCGACATGGCAAATT 59.801 47.619 0.00 0.00 34.31 1.82
4221 4496 1.611491 ACCGTTCGACATGGCAAATTT 59.389 42.857 0.00 0.00 34.31 1.82
4222 4497 2.250188 CCGTTCGACATGGCAAATTTC 58.750 47.619 0.00 0.00 0.00 2.17
4223 4498 2.351253 CCGTTCGACATGGCAAATTTCA 60.351 45.455 0.00 0.00 0.00 2.69
4224 4499 3.500982 CGTTCGACATGGCAAATTTCAT 58.499 40.909 0.00 0.00 0.00 2.57
4225 4500 3.543494 CGTTCGACATGGCAAATTTCATC 59.457 43.478 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.209812 CCTCAGCCGTCGGATCGA 61.210 66.667 17.49 8.42 0.00 3.59
8 9 3.471244 GACCTCAGCCGTCGGATCG 62.471 68.421 17.49 3.92 0.00 3.69
9 10 2.413765 GACCTCAGCCGTCGGATC 59.586 66.667 17.49 0.00 0.00 3.36
15 16 3.374402 CTGGACGACCTCAGCCGT 61.374 66.667 5.33 0.00 42.17 5.68
16 17 4.135153 CCTGGACGACCTCAGCCG 62.135 72.222 5.33 0.00 37.04 5.52
17 18 2.680352 TCCTGGACGACCTCAGCC 60.680 66.667 5.33 0.00 37.04 4.85
18 19 2.888863 CTCCTGGACGACCTCAGC 59.111 66.667 5.33 0.00 37.04 4.26
19 20 1.536073 TTGCTCCTGGACGACCTCAG 61.536 60.000 5.33 0.00 37.04 3.35
20 21 1.533033 TTGCTCCTGGACGACCTCA 60.533 57.895 5.33 0.00 37.04 3.86
21 22 1.216710 CTTGCTCCTGGACGACCTC 59.783 63.158 5.33 0.00 37.04 3.85
22 23 0.616111 ATCTTGCTCCTGGACGACCT 60.616 55.000 5.33 0.00 37.04 3.85
23 24 0.179097 GATCTTGCTCCTGGACGACC 60.179 60.000 0.00 0.00 0.00 4.79
24 25 0.179097 GGATCTTGCTCCTGGACGAC 60.179 60.000 0.00 0.00 32.18 4.34
25 26 0.324738 AGGATCTTGCTCCTGGACGA 60.325 55.000 0.00 0.00 44.18 4.20
26 27 1.067821 GTAGGATCTTGCTCCTGGACG 59.932 57.143 2.54 0.00 45.44 4.79
27 28 1.067821 CGTAGGATCTTGCTCCTGGAC 59.932 57.143 2.54 0.00 45.44 4.02
28 29 1.403814 CGTAGGATCTTGCTCCTGGA 58.596 55.000 2.54 0.00 45.44 3.86
29 30 3.976339 CGTAGGATCTTGCTCCTGG 57.024 57.895 2.54 0.00 45.44 4.45
43 44 1.434555 TGATGCGTTTTGGACCGTAG 58.565 50.000 0.00 0.00 0.00 3.51
44 45 1.801771 CTTGATGCGTTTTGGACCGTA 59.198 47.619 0.00 0.00 0.00 4.02
45 46 0.591170 CTTGATGCGTTTTGGACCGT 59.409 50.000 0.00 0.00 0.00 4.83
46 47 0.591170 ACTTGATGCGTTTTGGACCG 59.409 50.000 0.00 0.00 0.00 4.79
47 48 3.907894 TTACTTGATGCGTTTTGGACC 57.092 42.857 0.00 0.00 0.00 4.46
48 49 3.662186 CGTTTACTTGATGCGTTTTGGAC 59.338 43.478 0.00 0.00 0.00 4.02
49 50 3.560481 TCGTTTACTTGATGCGTTTTGGA 59.440 39.130 0.00 0.00 0.00 3.53
50 51 3.879427 TCGTTTACTTGATGCGTTTTGG 58.121 40.909 0.00 0.00 0.00 3.28
51 52 4.553429 GGATCGTTTACTTGATGCGTTTTG 59.447 41.667 0.00 0.00 0.00 2.44
52 53 4.668177 CGGATCGTTTACTTGATGCGTTTT 60.668 41.667 7.77 0.00 46.86 2.43
53 54 3.181524 CGGATCGTTTACTTGATGCGTTT 60.182 43.478 7.77 0.00 46.86 3.60
54 55 2.347452 CGGATCGTTTACTTGATGCGTT 59.653 45.455 7.77 0.00 46.86 4.84
55 56 1.924524 CGGATCGTTTACTTGATGCGT 59.075 47.619 7.77 0.00 46.86 5.24
56 57 2.628194 CGGATCGTTTACTTGATGCG 57.372 50.000 1.96 1.96 46.90 4.73
57 58 2.034842 CGTCGGATCGTTTACTTGATGC 60.035 50.000 0.00 0.00 0.00 3.91
58 59 2.534349 CCGTCGGATCGTTTACTTGATG 59.466 50.000 4.91 0.00 0.00 3.07
59 60 2.805845 CCGTCGGATCGTTTACTTGAT 58.194 47.619 4.91 0.00 0.00 2.57
60 61 1.733389 GCCGTCGGATCGTTTACTTGA 60.733 52.381 17.49 0.00 0.00 3.02
61 62 0.643820 GCCGTCGGATCGTTTACTTG 59.356 55.000 17.49 0.00 0.00 3.16
62 63 0.459063 GGCCGTCGGATCGTTTACTT 60.459 55.000 17.49 0.00 0.00 2.24
63 64 1.140375 GGCCGTCGGATCGTTTACT 59.860 57.895 17.49 0.00 0.00 2.24
64 65 0.737019 TTGGCCGTCGGATCGTTTAC 60.737 55.000 17.49 0.00 0.00 2.01
65 66 0.176219 ATTGGCCGTCGGATCGTTTA 59.824 50.000 17.49 0.00 0.00 2.01
66 67 0.176219 TATTGGCCGTCGGATCGTTT 59.824 50.000 17.49 0.00 0.00 3.60
67 68 0.176219 TTATTGGCCGTCGGATCGTT 59.824 50.000 17.49 0.00 0.00 3.85
68 69 0.391597 ATTATTGGCCGTCGGATCGT 59.608 50.000 17.49 0.00 0.00 3.73
69 70 1.068474 GATTATTGGCCGTCGGATCG 58.932 55.000 17.49 0.00 0.00 3.69
70 71 1.068474 CGATTATTGGCCGTCGGATC 58.932 55.000 17.49 6.89 0.00 3.36
71 72 0.949105 GCGATTATTGGCCGTCGGAT 60.949 55.000 17.49 1.83 34.85 4.18
72 73 1.593209 GCGATTATTGGCCGTCGGA 60.593 57.895 17.49 0.00 34.85 4.55
73 74 1.594293 AGCGATTATTGGCCGTCGG 60.594 57.895 6.99 6.99 34.85 4.79
74 75 0.874175 TCAGCGATTATTGGCCGTCG 60.874 55.000 0.00 4.08 37.17 5.12
75 76 0.861837 CTCAGCGATTATTGGCCGTC 59.138 55.000 0.00 0.00 0.00 4.79
76 77 1.160329 GCTCAGCGATTATTGGCCGT 61.160 55.000 0.00 0.00 0.00 5.68
77 78 0.882042 AGCTCAGCGATTATTGGCCG 60.882 55.000 0.00 0.00 0.00 6.13
78 79 2.169832 TAGCTCAGCGATTATTGGCC 57.830 50.000 0.00 0.00 0.00 5.36
79 80 3.329386 TCATAGCTCAGCGATTATTGGC 58.671 45.455 0.00 0.00 0.00 4.52
80 81 4.814147 TCTCATAGCTCAGCGATTATTGG 58.186 43.478 0.00 0.00 0.00 3.16
81 82 5.164109 CGTTCTCATAGCTCAGCGATTATTG 60.164 44.000 0.00 0.00 0.00 1.90
82 83 4.920340 CGTTCTCATAGCTCAGCGATTATT 59.080 41.667 0.00 0.00 0.00 1.40
83 84 4.480541 CGTTCTCATAGCTCAGCGATTAT 58.519 43.478 0.00 0.00 0.00 1.28
84 85 3.853676 GCGTTCTCATAGCTCAGCGATTA 60.854 47.826 0.00 0.00 0.00 1.75
85 86 2.736978 CGTTCTCATAGCTCAGCGATT 58.263 47.619 0.00 0.00 0.00 3.34
86 87 1.601663 GCGTTCTCATAGCTCAGCGAT 60.602 52.381 0.00 0.00 0.00 4.58
87 88 0.248661 GCGTTCTCATAGCTCAGCGA 60.249 55.000 0.00 0.00 0.00 4.93
88 89 1.535636 CGCGTTCTCATAGCTCAGCG 61.536 60.000 0.00 0.00 40.37 5.18
89 90 0.526524 ACGCGTTCTCATAGCTCAGC 60.527 55.000 5.58 0.00 0.00 4.26
90 91 2.757686 TACGCGTTCTCATAGCTCAG 57.242 50.000 20.78 0.00 0.00 3.35
91 92 2.357952 ACATACGCGTTCTCATAGCTCA 59.642 45.455 20.78 0.00 0.00 4.26
92 93 3.001395 ACATACGCGTTCTCATAGCTC 57.999 47.619 20.78 0.00 0.00 4.09
93 94 3.372954 GAACATACGCGTTCTCATAGCT 58.627 45.455 20.78 0.00 41.70 3.32
94 95 3.755041 GAACATACGCGTTCTCATAGC 57.245 47.619 20.78 0.00 41.70 2.97
101 102 1.392510 GTTGGGAGAACATACGCGTTC 59.607 52.381 20.78 9.19 44.63 3.95
102 103 1.001633 AGTTGGGAGAACATACGCGTT 59.998 47.619 20.78 0.00 0.00 4.84
103 104 0.606604 AGTTGGGAGAACATACGCGT 59.393 50.000 19.17 19.17 0.00 6.01
104 105 2.572191 TAGTTGGGAGAACATACGCG 57.428 50.000 3.53 3.53 0.00 6.01
105 106 3.592059 TGTTAGTTGGGAGAACATACGC 58.408 45.455 0.00 0.00 0.00 4.42
106 107 6.570692 ACTATGTTAGTTGGGAGAACATACG 58.429 40.000 3.24 3.58 42.35 3.06
120 121 3.181465 CGCCCATCCAGAACTATGTTAGT 60.181 47.826 0.00 0.00 41.73 2.24
121 122 3.393800 CGCCCATCCAGAACTATGTTAG 58.606 50.000 0.00 0.00 0.00 2.34
122 123 2.484770 GCGCCCATCCAGAACTATGTTA 60.485 50.000 0.00 0.00 0.00 2.41
123 124 1.747206 GCGCCCATCCAGAACTATGTT 60.747 52.381 0.00 0.00 0.00 2.71
124 125 0.179045 GCGCCCATCCAGAACTATGT 60.179 55.000 0.00 0.00 0.00 2.29
125 126 0.107456 AGCGCCCATCCAGAACTATG 59.893 55.000 2.29 0.00 0.00 2.23
126 127 0.394565 GAGCGCCCATCCAGAACTAT 59.605 55.000 2.29 0.00 0.00 2.12
127 128 1.686325 GGAGCGCCCATCCAGAACTA 61.686 60.000 2.29 0.00 36.79 2.24
128 129 2.586792 GAGCGCCCATCCAGAACT 59.413 61.111 2.29 0.00 0.00 3.01
129 130 2.514824 GGAGCGCCCATCCAGAAC 60.515 66.667 2.29 0.00 36.79 3.01
130 131 4.161295 CGGAGCGCCCATCCAGAA 62.161 66.667 13.90 0.00 36.57 3.02
149 150 4.436998 CGTCCCGCACACCTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
172 173 0.244178 GAACGAAGCGAGAGGAAGGT 59.756 55.000 0.00 0.00 0.00 3.50
175 176 0.895530 ATGGAACGAAGCGAGAGGAA 59.104 50.000 0.00 0.00 0.00 3.36
245 255 8.428186 AACTAACCGCGAAATATCTTAATCAA 57.572 30.769 8.23 0.00 0.00 2.57
246 256 9.188588 CTAACTAACCGCGAAATATCTTAATCA 57.811 33.333 8.23 0.00 0.00 2.57
283 293 3.605749 TTGCGGGTCCTGCTAGTGC 62.606 63.158 23.33 0.79 40.20 4.40
309 327 6.049790 GGAGGAAAATATCTACAGAAACGCT 58.950 40.000 0.00 0.00 0.00 5.07
310 328 5.050972 CGGAGGAAAATATCTACAGAAACGC 60.051 44.000 0.00 0.00 0.00 4.84
311 329 6.512177 CGGAGGAAAATATCTACAGAAACG 57.488 41.667 0.00 0.00 0.00 3.60
538 578 1.667212 GGCGGGTTGGAATAGTAAACG 59.333 52.381 0.00 0.00 0.00 3.60
784 830 1.532604 CCTGTCGGCAGTGACCTGTA 61.533 60.000 17.16 0.00 41.02 2.74
801 848 4.814294 GACGACGGATTGCGGCCT 62.814 66.667 0.00 0.00 0.00 5.19
877 924 3.453070 GACGCCTCCTCCTCCATGC 62.453 68.421 0.00 0.00 0.00 4.06
977 1053 2.529744 AAGTCCCAGGCAGTCACCC 61.530 63.158 0.00 0.00 0.00 4.61
982 1058 0.550147 ATACCCAAGTCCCAGGCAGT 60.550 55.000 0.00 0.00 0.00 4.40
992 1068 2.674754 CGCCCACCATACCCAAGT 59.325 61.111 0.00 0.00 0.00 3.16
1067 1143 3.726517 CAACGAACGGCTGCCCTG 61.727 66.667 14.12 2.10 0.00 4.45
1083 1159 2.583441 CCTCACCTTGCTCCGGTCA 61.583 63.158 0.00 0.00 30.82 4.02
1239 1317 9.088512 GAGAAAATGGTGATACTAGTTGTACTG 57.911 37.037 0.00 0.00 33.45 2.74
1260 1338 7.326454 CACCAGAGACATCATTAGAAGAGAAA 58.674 38.462 0.00 0.00 0.00 2.52
1398 1482 0.106708 AGCACTTCGAAACTGGCAGA 59.893 50.000 23.66 0.00 0.00 4.26
1407 1491 2.738846 GAGCATCTTGAAGCACTTCGAA 59.261 45.455 0.00 0.00 42.28 3.71
1410 1494 3.501445 ACTTGAGCATCTTGAAGCACTTC 59.499 43.478 3.37 3.37 36.64 3.01
1493 1577 4.883585 GCATGAATTGGACAGAACTATGGA 59.116 41.667 0.00 0.00 0.00 3.41
1513 1597 0.392863 TCACTACAAGCATGGCGCAT 60.393 50.000 10.83 0.00 46.13 4.73
1516 1600 1.655484 TCATCACTACAAGCATGGCG 58.345 50.000 0.00 0.00 0.00 5.69
1548 1632 1.267532 GGACATCACTGCGTATTTGCG 60.268 52.381 0.00 0.00 37.81 4.85
1553 1637 2.233676 TCTGTTGGACATCACTGCGTAT 59.766 45.455 0.00 0.00 0.00 3.06
1589 1673 1.369209 CCGCAAGCACTTGACAACG 60.369 57.895 14.44 7.69 42.93 4.10
1734 1819 6.493116 CATACCAGCTTAGAGCATTCTTTTG 58.507 40.000 2.47 0.00 45.56 2.44
1790 1875 7.209475 CCAACACCAACATTCAACTTAAGAAT 58.791 34.615 10.09 0.00 36.19 2.40
1798 1883 2.472816 CTGCCAACACCAACATTCAAC 58.527 47.619 0.00 0.00 0.00 3.18
1805 1890 1.067916 CCAAGCTGCCAACACCAAC 59.932 57.895 0.00 0.00 0.00 3.77
1863 1948 0.603569 CACTAGGTTCCGACAGCACT 59.396 55.000 0.00 0.00 0.00 4.40
2032 2117 9.799106 AGAGAAAGAAAGAGAAAACCAATCATA 57.201 29.630 0.00 0.00 0.00 2.15
2064 2149 4.869861 GCGGCAACATAAATTTTGGAAGAT 59.130 37.500 0.00 0.00 0.00 2.40
2146 2233 8.803235 AGAAAAGCAAGGGTTTAATAAGTAAGG 58.197 33.333 0.00 0.00 32.76 2.69
2202 2290 5.683876 TTTCCAATTGGTCTGTTTTTGGA 57.316 34.783 23.76 0.00 42.98 3.53
2205 2293 8.898761 GGTAAATTTTCCAATTGGTCTGTTTTT 58.101 29.630 23.76 17.22 32.57 1.94
2326 2414 5.531659 TCCGAGAACTATGAATGAGTAGGTC 59.468 44.000 0.00 0.00 35.38 3.85
2374 2463 1.767088 CATTCCTCCTGGAGATGCTGA 59.233 52.381 25.18 10.21 44.24 4.26
2436 2525 9.604626 GATTTAACATATGCTAGAAATGCAGAC 57.395 33.333 1.58 0.00 44.04 3.51
2523 2612 3.830744 TTACCCTGGTGATCCATAACG 57.169 47.619 0.00 0.00 43.43 3.18
2758 2847 6.152661 TGGAAACTTTGAACTGAATGAAGTGT 59.847 34.615 0.00 0.00 31.48 3.55
2928 3017 0.319555 CCGACGACCACACATTCTGT 60.320 55.000 0.00 0.00 0.00 3.41
2952 3041 1.066858 TCCTCGAGAATTGGTGTGCTC 60.067 52.381 15.71 0.00 0.00 4.26
2966 3055 4.273724 CAGATCGACTATGTCTTTCCTCGA 59.726 45.833 0.00 0.00 34.88 4.04
3162 3251 5.067283 TGGATCATCGTCTTCGTATTCAGAA 59.933 40.000 0.00 0.00 38.33 3.02
3171 3260 2.940147 GAGGATGGATCATCGTCTTCG 58.060 52.381 17.90 0.00 46.07 3.79
3249 3338 5.609423 AGTAAGCAATGATCATCCTCACTC 58.391 41.667 9.06 0.00 0.00 3.51
3254 3347 4.951715 TGCAAAGTAAGCAATGATCATCCT 59.048 37.500 9.06 5.86 39.39 3.24
3375 3469 8.843262 CCACAATAATATCCATACATATGCCAG 58.157 37.037 1.58 0.00 32.40 4.85
3482 3576 0.037790 AGCGCAGAGACAAAGAGGTC 60.038 55.000 11.47 0.00 38.08 3.85
3539 3638 7.245419 ACTTGCATTTGGTGAAAACAAATAC 57.755 32.000 3.09 0.00 44.29 1.89
3642 3743 5.396070 GCAATTTCCAATTTTGCAACTTTCG 59.604 36.000 0.00 0.00 43.95 3.46
3666 3767 1.298859 GGCAAGGTAGCAGACAACCG 61.299 60.000 0.00 0.00 40.88 4.44
3764 4036 3.855858 TCTTTTTATTCGCAAATGGGGC 58.144 40.909 0.00 0.00 0.00 5.80
3783 4055 7.505585 AGCTAGAGAAGATAACACTATGCTTCT 59.494 37.037 0.00 0.00 45.61 2.85
3812 4084 8.828751 ACCCAGTTGAACTTAATACCTATTGTA 58.171 33.333 0.00 0.00 0.00 2.41
3813 4085 7.696017 ACCCAGTTGAACTTAATACCTATTGT 58.304 34.615 0.00 0.00 0.00 2.71
3814 4086 8.575649 AACCCAGTTGAACTTAATACCTATTG 57.424 34.615 0.00 0.00 0.00 1.90
3815 4087 9.901172 CTAACCCAGTTGAACTTAATACCTATT 57.099 33.333 0.00 0.00 0.00 1.73
3816 4088 7.991460 GCTAACCCAGTTGAACTTAATACCTAT 59.009 37.037 0.00 0.00 0.00 2.57
3986 4261 5.007682 TCAAAAACATAAGCACTAGGGGAC 58.992 41.667 0.00 0.00 0.00 4.46
4010 4285 7.283807 GTGAAAAAGTCCCCTGTTTCTAACTTA 59.716 37.037 6.85 0.00 42.92 2.24
4015 4290 5.130350 CAGTGAAAAAGTCCCCTGTTTCTA 58.870 41.667 6.85 0.00 42.92 2.10
4016 4291 3.954258 CAGTGAAAAAGTCCCCTGTTTCT 59.046 43.478 6.85 0.00 42.92 2.52
4017 4292 3.699538 ACAGTGAAAAAGTCCCCTGTTTC 59.300 43.478 0.00 0.00 42.84 2.78
4018 4293 3.708451 ACAGTGAAAAAGTCCCCTGTTT 58.292 40.909 0.00 0.00 35.15 2.83
4019 4294 3.382083 ACAGTGAAAAAGTCCCCTGTT 57.618 42.857 0.00 0.00 35.15 3.16
4020 4295 3.053619 AGAACAGTGAAAAAGTCCCCTGT 60.054 43.478 0.00 0.00 38.44 4.00
4021 4296 3.555966 AGAACAGTGAAAAAGTCCCCTG 58.444 45.455 0.00 0.00 32.87 4.45
4022 4297 3.953542 AGAACAGTGAAAAAGTCCCCT 57.046 42.857 0.00 0.00 0.00 4.79
4023 4298 4.277672 GGTTAGAACAGTGAAAAAGTCCCC 59.722 45.833 0.00 0.00 0.00 4.81
4024 4299 4.277672 GGGTTAGAACAGTGAAAAAGTCCC 59.722 45.833 0.00 0.00 0.00 4.46
4025 4300 4.024302 CGGGTTAGAACAGTGAAAAAGTCC 60.024 45.833 0.00 0.00 0.00 3.85
4026 4301 4.573607 ACGGGTTAGAACAGTGAAAAAGTC 59.426 41.667 0.00 0.00 0.00 3.01
4027 4302 4.520179 ACGGGTTAGAACAGTGAAAAAGT 58.480 39.130 0.00 0.00 0.00 2.66
4028 4303 5.494632 AACGGGTTAGAACAGTGAAAAAG 57.505 39.130 0.00 0.00 0.00 2.27
4029 4304 5.642686 CAAACGGGTTAGAACAGTGAAAAA 58.357 37.500 0.00 0.00 0.00 1.94
4030 4305 4.439016 GCAAACGGGTTAGAACAGTGAAAA 60.439 41.667 0.00 0.00 0.00 2.29
4031 4306 3.065648 GCAAACGGGTTAGAACAGTGAAA 59.934 43.478 0.00 0.00 0.00 2.69
4032 4307 2.614983 GCAAACGGGTTAGAACAGTGAA 59.385 45.455 0.00 0.00 0.00 3.18
4033 4308 2.158871 AGCAAACGGGTTAGAACAGTGA 60.159 45.455 0.00 0.00 0.00 3.41
4034 4309 2.032030 CAGCAAACGGGTTAGAACAGTG 60.032 50.000 0.00 0.00 0.00 3.66
4035 4310 2.158871 TCAGCAAACGGGTTAGAACAGT 60.159 45.455 0.00 0.00 0.00 3.55
4036 4311 2.489971 TCAGCAAACGGGTTAGAACAG 58.510 47.619 0.00 0.00 0.00 3.16
4037 4312 2.623878 TCAGCAAACGGGTTAGAACA 57.376 45.000 0.00 0.00 0.00 3.18
4038 4313 2.876550 ACTTCAGCAAACGGGTTAGAAC 59.123 45.455 0.00 0.00 0.00 3.01
4039 4314 3.202829 ACTTCAGCAAACGGGTTAGAA 57.797 42.857 0.00 0.00 0.00 2.10
4040 4315 2.922740 ACTTCAGCAAACGGGTTAGA 57.077 45.000 0.00 0.00 0.00 2.10
4041 4316 3.982576 AAACTTCAGCAAACGGGTTAG 57.017 42.857 0.00 0.00 0.00 2.34
4042 4317 3.251487 GCTAAACTTCAGCAAACGGGTTA 59.749 43.478 0.00 0.00 38.93 2.85
4043 4318 2.034179 GCTAAACTTCAGCAAACGGGTT 59.966 45.455 0.00 0.00 38.93 4.11
4044 4319 1.607148 GCTAAACTTCAGCAAACGGGT 59.393 47.619 0.00 0.00 38.93 5.28
4045 4320 1.606668 TGCTAAACTTCAGCAAACGGG 59.393 47.619 0.00 0.00 45.71 5.28
4051 4326 3.186409 GTCAATCGTGCTAAACTTCAGCA 59.814 43.478 0.00 0.00 46.47 4.41
4052 4327 3.424962 GGTCAATCGTGCTAAACTTCAGC 60.425 47.826 0.00 0.00 39.56 4.26
4053 4328 3.125316 GGGTCAATCGTGCTAAACTTCAG 59.875 47.826 0.00 0.00 0.00 3.02
4054 4329 3.071479 GGGTCAATCGTGCTAAACTTCA 58.929 45.455 0.00 0.00 0.00 3.02
4055 4330 3.071479 TGGGTCAATCGTGCTAAACTTC 58.929 45.455 0.00 0.00 0.00 3.01
4056 4331 3.134574 TGGGTCAATCGTGCTAAACTT 57.865 42.857 0.00 0.00 0.00 2.66
4057 4332 2.851263 TGGGTCAATCGTGCTAAACT 57.149 45.000 0.00 0.00 0.00 2.66
4058 4333 2.747446 ACATGGGTCAATCGTGCTAAAC 59.253 45.455 0.00 0.00 0.00 2.01
4059 4334 3.066291 ACATGGGTCAATCGTGCTAAA 57.934 42.857 0.00 0.00 0.00 1.85
4060 4335 2.779755 ACATGGGTCAATCGTGCTAA 57.220 45.000 0.00 0.00 0.00 3.09
4061 4336 2.746904 CAAACATGGGTCAATCGTGCTA 59.253 45.455 0.00 0.00 0.00 3.49
4062 4337 1.541147 CAAACATGGGTCAATCGTGCT 59.459 47.619 0.00 0.00 0.00 4.40
4063 4338 1.539388 TCAAACATGGGTCAATCGTGC 59.461 47.619 0.00 0.00 0.00 5.34
4064 4339 3.913548 TTCAAACATGGGTCAATCGTG 57.086 42.857 0.00 0.00 0.00 4.35
4065 4340 3.888930 ACTTTCAAACATGGGTCAATCGT 59.111 39.130 0.00 0.00 0.00 3.73
4066 4341 4.503741 ACTTTCAAACATGGGTCAATCG 57.496 40.909 0.00 0.00 0.00 3.34
4067 4342 7.552458 AAAAACTTTCAAACATGGGTCAATC 57.448 32.000 0.00 0.00 0.00 2.67
4088 4363 4.402829 TGAAATGGGTCAGATCCGAAAAA 58.597 39.130 0.00 0.00 0.00 1.94
4089 4364 4.027674 TGAAATGGGTCAGATCCGAAAA 57.972 40.909 0.00 0.00 0.00 2.29
4090 4365 3.712016 TGAAATGGGTCAGATCCGAAA 57.288 42.857 0.00 0.00 0.00 3.46
4091 4366 3.712016 TTGAAATGGGTCAGATCCGAA 57.288 42.857 0.00 0.00 0.00 4.30
4092 4367 3.712016 TTTGAAATGGGTCAGATCCGA 57.288 42.857 0.00 0.00 0.00 4.55
4093 4368 3.426159 CGTTTTGAAATGGGTCAGATCCG 60.426 47.826 0.00 0.00 0.00 4.18
4094 4369 3.673323 GCGTTTTGAAATGGGTCAGATCC 60.673 47.826 0.00 0.00 0.00 3.36
4095 4370 3.501950 GCGTTTTGAAATGGGTCAGATC 58.498 45.455 0.00 0.00 0.00 2.75
4096 4371 2.231235 GGCGTTTTGAAATGGGTCAGAT 59.769 45.455 0.00 0.00 0.00 2.90
4097 4372 1.611491 GGCGTTTTGAAATGGGTCAGA 59.389 47.619 0.00 0.00 0.00 3.27
4098 4373 1.339610 TGGCGTTTTGAAATGGGTCAG 59.660 47.619 0.00 0.00 0.00 3.51
4099 4374 1.403814 TGGCGTTTTGAAATGGGTCA 58.596 45.000 0.00 0.00 0.00 4.02
4100 4375 2.131972 GTTGGCGTTTTGAAATGGGTC 58.868 47.619 0.00 0.00 0.00 4.46
4101 4376 1.482593 TGTTGGCGTTTTGAAATGGGT 59.517 42.857 0.00 0.00 0.00 4.51
4102 4377 2.231215 TGTTGGCGTTTTGAAATGGG 57.769 45.000 0.00 0.00 0.00 4.00
4103 4378 2.286563 GGTTGTTGGCGTTTTGAAATGG 59.713 45.455 0.00 0.00 0.00 3.16
4104 4379 2.932614 TGGTTGTTGGCGTTTTGAAATG 59.067 40.909 0.00 0.00 0.00 2.32
4105 4380 3.252974 TGGTTGTTGGCGTTTTGAAAT 57.747 38.095 0.00 0.00 0.00 2.17
4106 4381 2.743636 TGGTTGTTGGCGTTTTGAAA 57.256 40.000 0.00 0.00 0.00 2.69
4107 4382 2.544685 CATGGTTGTTGGCGTTTTGAA 58.455 42.857 0.00 0.00 0.00 2.69
4108 4383 1.202463 CCATGGTTGTTGGCGTTTTGA 60.202 47.619 2.57 0.00 0.00 2.69
4109 4384 1.216122 CCATGGTTGTTGGCGTTTTG 58.784 50.000 2.57 0.00 0.00 2.44
4110 4385 3.677002 CCATGGTTGTTGGCGTTTT 57.323 47.368 2.57 0.00 0.00 2.43
4116 4391 2.258013 ACGACGCCATGGTTGTTGG 61.258 57.895 22.77 15.64 37.31 3.77
4117 4392 1.082169 CACGACGCCATGGTTGTTG 60.082 57.895 14.67 17.58 32.17 3.33
4118 4393 2.903547 GCACGACGCCATGGTTGTT 61.904 57.895 14.67 0.00 32.17 2.83
4119 4394 3.353836 GCACGACGCCATGGTTGT 61.354 61.111 14.67 12.63 34.86 3.32
4120 4395 2.616330 AAGCACGACGCCATGGTTG 61.616 57.895 14.67 9.14 44.04 3.77
4121 4396 2.281484 AAGCACGACGCCATGGTT 60.281 55.556 14.67 0.00 44.04 3.67
4122 4397 3.049674 CAAGCACGACGCCATGGT 61.050 61.111 14.67 0.00 44.04 3.55
4123 4398 4.465512 GCAAGCACGACGCCATGG 62.466 66.667 7.63 7.63 44.04 3.66
4124 4399 3.725459 TGCAAGCACGACGCCATG 61.725 61.111 0.00 0.00 44.04 3.66
4125 4400 3.726517 GTGCAAGCACGACGCCAT 61.727 61.111 9.66 0.00 44.04 4.40
4133 4408 1.208642 GGCGTTTTCAGTGCAAGCAC 61.209 55.000 16.97 16.97 46.50 4.40
4134 4409 1.065600 GGCGTTTTCAGTGCAAGCA 59.934 52.632 0.00 0.00 0.00 3.91
4135 4410 0.318955 ATGGCGTTTTCAGTGCAAGC 60.319 50.000 0.00 0.00 0.00 4.01
4136 4411 1.001487 TCATGGCGTTTTCAGTGCAAG 60.001 47.619 0.00 0.00 0.00 4.01
4137 4412 1.028130 TCATGGCGTTTTCAGTGCAA 58.972 45.000 0.00 0.00 0.00 4.08
4138 4413 1.028130 TTCATGGCGTTTTCAGTGCA 58.972 45.000 0.00 0.00 0.00 4.57
4139 4414 1.408422 GTTCATGGCGTTTTCAGTGC 58.592 50.000 0.00 0.00 0.00 4.40
4140 4415 1.608590 AGGTTCATGGCGTTTTCAGTG 59.391 47.619 0.00 0.00 0.00 3.66
4141 4416 1.880027 GAGGTTCATGGCGTTTTCAGT 59.120 47.619 0.00 0.00 0.00 3.41
4142 4417 1.135972 CGAGGTTCATGGCGTTTTCAG 60.136 52.381 0.00 0.00 0.00 3.02
4143 4418 0.871722 CGAGGTTCATGGCGTTTTCA 59.128 50.000 0.00 0.00 0.00 2.69
4144 4419 0.168128 CCGAGGTTCATGGCGTTTTC 59.832 55.000 0.00 0.00 0.00 2.29
4145 4420 1.862602 GCCGAGGTTCATGGCGTTTT 61.863 55.000 0.00 0.00 39.30 2.43
4146 4421 2.332654 GCCGAGGTTCATGGCGTTT 61.333 57.895 0.00 0.00 39.30 3.60
4147 4422 2.746277 GCCGAGGTTCATGGCGTT 60.746 61.111 0.00 0.00 39.30 4.84
4150 4425 2.292794 TAGACGCCGAGGTTCATGGC 62.293 60.000 0.00 0.00 45.39 4.40
4151 4426 0.249073 CTAGACGCCGAGGTTCATGG 60.249 60.000 0.00 0.00 0.00 3.66
4152 4427 0.872021 GCTAGACGCCGAGGTTCATG 60.872 60.000 0.00 0.00 0.00 3.07
4153 4428 1.038130 AGCTAGACGCCGAGGTTCAT 61.038 55.000 0.00 0.00 40.39 2.57
4154 4429 1.654954 GAGCTAGACGCCGAGGTTCA 61.655 60.000 0.00 0.00 40.39 3.18
4155 4430 1.064458 GAGCTAGACGCCGAGGTTC 59.936 63.158 0.00 0.00 40.39 3.62
4156 4431 1.378778 AGAGCTAGACGCCGAGGTT 60.379 57.895 0.00 0.00 40.39 3.50
4157 4432 2.115911 CAGAGCTAGACGCCGAGGT 61.116 63.158 0.00 0.00 40.39 3.85
4158 4433 2.718731 CAGAGCTAGACGCCGAGG 59.281 66.667 0.00 0.00 40.39 4.63
4159 4434 2.718731 CCAGAGCTAGACGCCGAG 59.281 66.667 0.00 0.00 40.39 4.63
4160 4435 3.518998 GCCAGAGCTAGACGCCGA 61.519 66.667 0.00 0.00 40.39 5.54
4161 4436 4.577246 GGCCAGAGCTAGACGCCG 62.577 72.222 0.00 0.00 40.39 6.46
4162 4437 4.228567 GGGCCAGAGCTAGACGCC 62.229 72.222 4.39 5.26 40.39 5.68
4163 4438 3.461773 TGGGCCAGAGCTAGACGC 61.462 66.667 0.00 0.00 39.73 5.19
4164 4439 2.496817 GTGGGCCAGAGCTAGACG 59.503 66.667 6.40 0.00 39.73 4.18
4165 4440 1.681486 GAGGTGGGCCAGAGCTAGAC 61.681 65.000 6.40 0.00 39.73 2.59
4166 4441 1.381872 GAGGTGGGCCAGAGCTAGA 60.382 63.158 6.40 0.00 39.73 2.43
4167 4442 2.439104 GGAGGTGGGCCAGAGCTAG 61.439 68.421 6.40 0.00 39.73 3.42
4168 4443 2.365635 GGAGGTGGGCCAGAGCTA 60.366 66.667 6.40 0.00 39.73 3.32
4169 4444 4.345286 AGGAGGTGGGCCAGAGCT 62.345 66.667 6.40 5.02 39.73 4.09
4170 4445 4.106925 CAGGAGGTGGGCCAGAGC 62.107 72.222 6.40 0.00 37.19 4.09
4171 4446 3.406200 CCAGGAGGTGGGCCAGAG 61.406 72.222 6.40 0.00 43.63 3.35
4188 4463 0.521735 GAACGGTCAATTGGGCTGAC 59.478 55.000 5.42 0.00 42.08 3.51
4189 4464 0.953471 CGAACGGTCAATTGGGCTGA 60.953 55.000 5.42 0.00 0.00 4.26
4190 4465 0.953471 TCGAACGGTCAATTGGGCTG 60.953 55.000 5.42 6.88 0.00 4.85
4191 4466 0.953960 GTCGAACGGTCAATTGGGCT 60.954 55.000 5.42 0.00 0.00 5.19
4192 4467 1.231958 TGTCGAACGGTCAATTGGGC 61.232 55.000 5.42 0.00 0.00 5.36
4193 4468 1.130373 CATGTCGAACGGTCAATTGGG 59.870 52.381 5.42 0.00 0.00 4.12
4194 4469 1.130373 CCATGTCGAACGGTCAATTGG 59.870 52.381 5.42 0.00 0.00 3.16
4195 4470 1.465689 GCCATGTCGAACGGTCAATTG 60.466 52.381 0.00 0.00 0.00 2.32
4196 4471 0.802494 GCCATGTCGAACGGTCAATT 59.198 50.000 0.00 0.00 0.00 2.32
4197 4472 0.321210 TGCCATGTCGAACGGTCAAT 60.321 50.000 0.00 0.00 0.00 2.57
4198 4473 0.533085 TTGCCATGTCGAACGGTCAA 60.533 50.000 0.00 0.00 0.00 3.18
4199 4474 0.533085 TTTGCCATGTCGAACGGTCA 60.533 50.000 0.00 0.00 0.00 4.02
4200 4475 0.802494 ATTTGCCATGTCGAACGGTC 59.198 50.000 0.00 0.00 0.00 4.79
4201 4476 1.243902 AATTTGCCATGTCGAACGGT 58.756 45.000 0.00 0.00 0.00 4.83
4202 4477 2.250188 GAAATTTGCCATGTCGAACGG 58.750 47.619 0.00 0.00 0.00 4.44
4203 4478 2.927429 TGAAATTTGCCATGTCGAACG 58.073 42.857 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.