Multiple sequence alignment - TraesCS6D01G206400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G206400 chr6D 100.000 7563 0 0 1 7563 292036236 292028674 0.000000e+00 13967.0
1 TraesCS6D01G206400 chr6D 93.176 762 47 5 43 800 67693920 67693160 0.000000e+00 1114.0
2 TraesCS6D01G206400 chr6A 94.180 5395 229 44 826 6174 431049458 431054813 0.000000e+00 8144.0
3 TraesCS6D01G206400 chr6A 95.053 283 11 3 6348 6627 431054937 431055219 6.960000e-120 442.0
4 TraesCS6D01G206400 chr6A 87.603 242 7 4 6627 6861 431055452 431055227 7.530000e-65 259.0
5 TraesCS6D01G206400 chr6A 89.610 154 10 6 7019 7170 554782110 554782259 2.790000e-44 191.0
6 TraesCS6D01G206400 chr6A 80.952 231 18 10 7329 7541 431056007 431056229 7.850000e-35 159.0
7 TraesCS6D01G206400 chr6A 85.000 100 8 5 7198 7296 431055799 431055892 2.250000e-15 95.3
8 TraesCS6D01G206400 chr6B 95.126 3242 133 14 3017 6245 454076962 454073733 0.000000e+00 5088.0
9 TraesCS6D01G206400 chr6B 92.270 2044 112 12 949 2958 454078988 454076957 0.000000e+00 2857.0
10 TraesCS6D01G206400 chr6B 89.868 681 44 15 6355 7019 454073656 454072985 0.000000e+00 852.0
11 TraesCS6D01G206400 chr6B 83.245 376 24 9 7186 7541 454072600 454072244 7.370000e-80 309.0
12 TraesCS6D01G206400 chr6B 89.865 148 11 3 7025 7170 717139195 717139050 3.600000e-43 187.0
13 TraesCS6D01G206400 chr3D 93.693 761 45 3 43 800 610719749 610720509 0.000000e+00 1136.0
14 TraesCS6D01G206400 chr3D 92.661 763 51 5 43 802 500603932 500603172 0.000000e+00 1094.0
15 TraesCS6D01G206400 chr3D 90.226 133 12 1 7025 7157 580128359 580128490 1.010000e-38 172.0
16 TraesCS6D01G206400 chr5D 93.149 759 48 4 43 798 526658256 526659013 0.000000e+00 1110.0
17 TraesCS6D01G206400 chr5D 90.389 822 49 20 1 799 65977948 65978762 0.000000e+00 1053.0
18 TraesCS6D01G206400 chr7D 92.773 761 50 5 43 800 34179481 34178723 0.000000e+00 1096.0
19 TraesCS6D01G206400 chr7D 92.247 761 49 10 43 798 54987498 54988253 0.000000e+00 1070.0
20 TraesCS6D01G206400 chr1D 92.084 758 56 4 43 798 218969937 218970692 0.000000e+00 1064.0
21 TraesCS6D01G206400 chr3B 90.465 818 56 10 1 797 657652747 657651931 0.000000e+00 1059.0
22 TraesCS6D01G206400 chr3B 88.424 812 73 7 6 797 714521321 714520511 0.000000e+00 959.0
23 TraesCS6D01G206400 chr3B 87.578 161 13 6 7027 7185 748466844 748466689 6.030000e-41 180.0
24 TraesCS6D01G206400 chr2A 90.875 800 55 11 1 793 733084018 733084806 0.000000e+00 1057.0
25 TraesCS6D01G206400 chr7A 90.512 801 57 12 1 793 624766903 624767692 0.000000e+00 1040.0
26 TraesCS6D01G206400 chr5A 88.523 819 63 15 1 797 484625201 484626010 0.000000e+00 963.0
27 TraesCS6D01G206400 chr4B 86.859 761 81 11 42 797 99340863 99340117 0.000000e+00 833.0
28 TraesCS6D01G206400 chr1A 89.189 148 12 3 7025 7170 2826158 2826013 1.680000e-41 182.0
29 TraesCS6D01G206400 chr1A 86.335 161 17 4 7025 7182 2839987 2839829 3.630000e-38 171.0
30 TraesCS6D01G206400 chr1A 84.756 164 17 7 7023 7182 478426954 478426795 2.830000e-34 158.0
31 TraesCS6D01G206400 chr2D 85.256 156 17 5 7027 7180 500361222 500361071 1.020000e-33 156.0
32 TraesCS6D01G206400 chr3A 84.810 158 18 5 7030 7185 697287309 697287156 3.650000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G206400 chr6D 292028674 292036236 7562 True 13967.000 13967 100.00000 1 7563 1 chr6D.!!$R2 7562
1 TraesCS6D01G206400 chr6D 67693160 67693920 760 True 1114.000 1114 93.17600 43 800 1 chr6D.!!$R1 757
2 TraesCS6D01G206400 chr6A 431049458 431056229 6771 False 2210.075 8144 88.79625 826 7541 4 chr6A.!!$F2 6715
3 TraesCS6D01G206400 chr6B 454072244 454078988 6744 True 2276.500 5088 90.12725 949 7541 4 chr6B.!!$R2 6592
4 TraesCS6D01G206400 chr3D 610719749 610720509 760 False 1136.000 1136 93.69300 43 800 1 chr3D.!!$F2 757
5 TraesCS6D01G206400 chr3D 500603172 500603932 760 True 1094.000 1094 92.66100 43 802 1 chr3D.!!$R1 759
6 TraesCS6D01G206400 chr5D 526658256 526659013 757 False 1110.000 1110 93.14900 43 798 1 chr5D.!!$F2 755
7 TraesCS6D01G206400 chr5D 65977948 65978762 814 False 1053.000 1053 90.38900 1 799 1 chr5D.!!$F1 798
8 TraesCS6D01G206400 chr7D 34178723 34179481 758 True 1096.000 1096 92.77300 43 800 1 chr7D.!!$R1 757
9 TraesCS6D01G206400 chr7D 54987498 54988253 755 False 1070.000 1070 92.24700 43 798 1 chr7D.!!$F1 755
10 TraesCS6D01G206400 chr1D 218969937 218970692 755 False 1064.000 1064 92.08400 43 798 1 chr1D.!!$F1 755
11 TraesCS6D01G206400 chr3B 657651931 657652747 816 True 1059.000 1059 90.46500 1 797 1 chr3B.!!$R1 796
12 TraesCS6D01G206400 chr3B 714520511 714521321 810 True 959.000 959 88.42400 6 797 1 chr3B.!!$R2 791
13 TraesCS6D01G206400 chr2A 733084018 733084806 788 False 1057.000 1057 90.87500 1 793 1 chr2A.!!$F1 792
14 TraesCS6D01G206400 chr7A 624766903 624767692 789 False 1040.000 1040 90.51200 1 793 1 chr7A.!!$F1 792
15 TraesCS6D01G206400 chr5A 484625201 484626010 809 False 963.000 963 88.52300 1 797 1 chr5A.!!$F1 796
16 TraesCS6D01G206400 chr4B 99340117 99340863 746 True 833.000 833 86.85900 42 797 1 chr4B.!!$R1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 492 0.318699 CTCTGAGCACCAACGAACGA 60.319 55.000 0.14 0.00 0.00 3.85 F
1264 1312 0.107848 CCGGGGAGTTAATTCTGCGT 60.108 55.000 0.00 0.00 0.00 5.24 F
1748 1802 0.818445 GCATGGGAGACAGGATGCTG 60.818 60.000 13.34 13.34 42.53 4.41 F
2099 2159 0.685458 GTCAATGCTGGGCTGGGAAT 60.685 55.000 0.00 0.00 0.00 3.01 F
2807 2889 1.001815 GTCATGTTTTCACACCCACGG 60.002 52.381 0.00 0.00 35.03 4.94 F
3075 3161 2.053244 ACCATGGTTGCATTTTGGGAA 58.947 42.857 13.00 0.00 0.00 3.97 F
4361 4450 1.056660 TTGTCCTTCCCCTGTCAGAC 58.943 55.000 0.00 0.00 0.00 3.51 F
5681 5777 0.749091 CCATCCTGCGGAAATCAGCA 60.749 55.000 7.94 7.94 44.34 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1802 0.036952 TCAGCTCTGCCTGTGTTAGC 60.037 55.000 0.00 0.00 34.47 3.09 R
2080 2140 0.685458 ATTCCCAGCCCAGCATTGAC 60.685 55.000 0.00 0.00 0.00 3.18 R
3467 3553 2.796032 GCGTCTATTACCGGTACACCAC 60.796 54.545 15.53 8.25 35.14 4.16 R
3566 3652 3.398954 TTCGCAACAACTCACAACTTC 57.601 42.857 0.00 0.00 0.00 3.01 R
4361 4450 0.037512 CACCACAGACTGCTCTCTGG 60.038 60.000 13.68 4.93 41.89 3.86 R
4637 4729 1.271325 TGTCTGGATTCGGCACAATGT 60.271 47.619 0.00 0.00 0.00 2.71 R
5839 5935 0.031178 CTGCACCAACCAAGACAAGC 59.969 55.000 0.00 0.00 0.00 4.01 R
7070 7364 0.389426 ACCATGCGAACGACCACTAC 60.389 55.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
439 476 1.078426 CGGATTTGGAACCGCCTCT 60.078 57.895 0.00 0.00 42.55 3.69
450 487 3.114616 CGCCTCTGAGCACCAACG 61.115 66.667 0.00 0.00 0.00 4.10
455 492 0.318699 CTCTGAGCACCAACGAACGA 60.319 55.000 0.14 0.00 0.00 3.85
509 548 2.687566 GAGGTGGGGGATGGACGT 60.688 66.667 0.00 0.00 0.00 4.34
526 565 1.735571 ACGTGGTAATGGCACGAAATC 59.264 47.619 2.17 0.00 44.06 2.17
539 578 2.359478 AAATCCGAAACCGCCGCT 60.359 55.556 0.00 0.00 0.00 5.52
583 623 0.918983 TGGGGAACTGCCTAATCCTG 59.081 55.000 0.00 0.00 36.66 3.86
802 844 6.710295 GCCACTTTTTAGATTTTGGGAAACAT 59.290 34.615 0.00 0.00 0.00 2.71
803 845 7.228507 GCCACTTTTTAGATTTTGGGAAACATT 59.771 33.333 0.00 0.00 0.00 2.71
804 846 9.119418 CCACTTTTTAGATTTTGGGAAACATTT 57.881 29.630 0.00 0.00 0.00 2.32
805 847 9.934190 CACTTTTTAGATTTTGGGAAACATTTG 57.066 29.630 0.00 0.00 0.00 2.32
806 848 9.898152 ACTTTTTAGATTTTGGGAAACATTTGA 57.102 25.926 0.00 0.00 0.00 2.69
812 854 8.421249 AGATTTTGGGAAACATTTGATACAGA 57.579 30.769 0.00 0.00 0.00 3.41
813 855 8.306761 AGATTTTGGGAAACATTTGATACAGAC 58.693 33.333 0.00 0.00 0.00 3.51
814 856 5.975693 TTGGGAAACATTTGATACAGACC 57.024 39.130 0.00 0.00 0.00 3.85
815 857 4.991776 TGGGAAACATTTGATACAGACCA 58.008 39.130 0.00 0.00 0.00 4.02
816 858 4.764823 TGGGAAACATTTGATACAGACCAC 59.235 41.667 0.00 0.00 0.00 4.16
817 859 4.764823 GGGAAACATTTGATACAGACCACA 59.235 41.667 0.00 0.00 0.00 4.17
818 860 5.335661 GGGAAACATTTGATACAGACCACAC 60.336 44.000 0.00 0.00 0.00 3.82
819 861 5.356882 AAACATTTGATACAGACCACACG 57.643 39.130 0.00 0.00 0.00 4.49
820 862 4.265904 ACATTTGATACAGACCACACGA 57.734 40.909 0.00 0.00 0.00 4.35
821 863 4.832248 ACATTTGATACAGACCACACGAT 58.168 39.130 0.00 0.00 0.00 3.73
822 864 5.245531 ACATTTGATACAGACCACACGATT 58.754 37.500 0.00 0.00 0.00 3.34
823 865 6.403049 ACATTTGATACAGACCACACGATTA 58.597 36.000 0.00 0.00 0.00 1.75
824 866 7.047891 ACATTTGATACAGACCACACGATTAT 58.952 34.615 0.00 0.00 0.00 1.28
929 971 1.066430 ACTTGTCAGTTGACCACACGT 60.066 47.619 9.60 0.00 44.15 4.49
1241 1289 1.557099 GGGATTTGGGGTTCAGGAAC 58.443 55.000 3.58 3.58 40.45 3.62
1248 1296 3.047877 GGTTCAGGAACACGCCGG 61.048 66.667 13.62 0.00 42.85 6.13
1257 1305 0.392060 GAACACGCCGGGGAGTTAAT 60.392 55.000 29.06 12.27 0.00 1.40
1264 1312 0.107848 CCGGGGAGTTAATTCTGCGT 60.108 55.000 0.00 0.00 0.00 5.24
1266 1314 2.419021 CCGGGGAGTTAATTCTGCGTTA 60.419 50.000 0.00 0.00 0.00 3.18
1267 1315 2.864343 CGGGGAGTTAATTCTGCGTTAG 59.136 50.000 0.00 0.00 0.00 2.34
1282 1330 4.448210 TGCGTTAGGATTCTAATTGGACC 58.552 43.478 0.00 0.00 37.74 4.46
1346 1395 2.767960 GTTCATGGCATTTTGGGGAGAT 59.232 45.455 0.00 0.00 0.00 2.75
1361 1410 4.078454 TGGGGAGATTTGGGATCATTTCAT 60.078 41.667 0.00 0.00 0.00 2.57
1369 1418 6.381481 TTTGGGATCATTTCATTCTCGATG 57.619 37.500 0.00 0.00 37.08 3.84
1385 1434 2.885266 TCGATGTAGTAGGATCTGGTGC 59.115 50.000 0.00 0.00 0.00 5.01
1386 1435 2.887783 CGATGTAGTAGGATCTGGTGCT 59.112 50.000 0.00 0.00 0.00 4.40
1387 1436 4.072839 CGATGTAGTAGGATCTGGTGCTA 58.927 47.826 0.00 0.00 0.00 3.49
1398 1447 4.518249 GATCTGGTGCTAGTTTAAAGGCT 58.482 43.478 8.51 0.00 0.00 4.58
1418 1467 2.263540 GCGCTTCCGTTCCCTACA 59.736 61.111 0.00 0.00 36.67 2.74
1421 1470 1.270147 GCGCTTCCGTTCCCTACATAT 60.270 52.381 0.00 0.00 36.67 1.78
1428 1477 4.890088 TCCGTTCCCTACATATATGTTGC 58.110 43.478 22.90 7.86 41.97 4.17
1459 1508 5.106396 CCATCTGTTCCTTGTGATTCTTGAC 60.106 44.000 0.00 0.00 0.00 3.18
1461 1510 6.419484 TCTGTTCCTTGTGATTCTTGACTA 57.581 37.500 0.00 0.00 0.00 2.59
1465 1514 4.569943 TCCTTGTGATTCTTGACTAGCAC 58.430 43.478 0.00 0.00 0.00 4.40
1478 1527 1.338973 ACTAGCACGTTCGGTTTCTGA 59.661 47.619 0.00 0.00 0.00 3.27
1506 1555 5.952347 GTCATGGGGTTTTAGGATCTTCTTT 59.048 40.000 0.00 0.00 0.00 2.52
1595 1646 3.374220 CAACATGTTGGTCATTGCAGT 57.626 42.857 27.60 0.00 36.95 4.40
1734 1785 2.876550 CTGGTAGTCATCACATGCATGG 59.123 50.000 29.41 18.30 0.00 3.66
1748 1802 0.818445 GCATGGGAGACAGGATGCTG 60.818 60.000 13.34 13.34 42.53 4.41
1749 1803 0.818445 CATGGGAGACAGGATGCTGC 60.818 60.000 14.95 7.32 42.53 5.25
1750 1804 0.987081 ATGGGAGACAGGATGCTGCT 60.987 55.000 14.95 12.17 42.53 4.24
1757 1811 2.005451 GACAGGATGCTGCTAACACAG 58.995 52.381 14.95 0.00 42.53 3.66
1794 1853 1.140134 AAGCCCCAAGGTGCCTCTAA 61.140 55.000 0.00 0.00 34.57 2.10
1893 1953 7.441878 GCATCTTGCAATTCTGTAATAACAC 57.558 36.000 0.00 0.00 44.26 3.32
1894 1954 7.028962 GCATCTTGCAATTCTGTAATAACACA 58.971 34.615 0.00 0.00 44.26 3.72
1935 1995 5.006358 GTGCCACAACTATAATCTGGTAACG 59.994 44.000 0.00 0.00 42.51 3.18
1966 2026 6.260050 TCTTTTCTTATGTGTGTCAACCTGTC 59.740 38.462 0.00 0.00 0.00 3.51
1985 2045 5.529060 CCTGTCTGCTTATTGGAATTCCTAC 59.471 44.000 24.73 6.67 36.82 3.18
2080 2140 9.586435 GTGATATTTAATTTTCTGTTGGAAGGG 57.414 33.333 0.00 0.00 35.16 3.95
2099 2159 0.685458 GTCAATGCTGGGCTGGGAAT 60.685 55.000 0.00 0.00 0.00 3.01
2392 2456 1.620822 TCTCCAAGCAAAAAGAGGGC 58.379 50.000 0.00 0.00 0.00 5.19
2480 2544 7.538575 TCTTCTTGCTTCATACATTAAAAGGC 58.461 34.615 0.00 0.00 0.00 4.35
2741 2805 6.430864 AGACTCTTCTCACTATTGATCCTCA 58.569 40.000 0.00 0.00 0.00 3.86
2807 2889 1.001815 GTCATGTTTTCACACCCACGG 60.002 52.381 0.00 0.00 35.03 4.94
2889 2971 4.935205 TGCTCGATACAAATGTTTAGTGCT 59.065 37.500 10.48 0.00 0.00 4.40
2919 3001 9.946165 ACTACTTTACTGCTTTGTTATCAAAAC 57.054 29.630 0.90 0.00 42.02 2.43
2948 3034 4.243007 ACATACTGCTGAAAGTTTTGCC 57.757 40.909 10.61 0.00 35.30 4.52
3012 3098 3.993081 TGAAGGCTTTGTTGTTGTTGTTG 59.007 39.130 0.00 0.00 0.00 3.33
3067 3153 7.675062 TGAAACTTTATTTACCATGGTTGCAT 58.325 30.769 25.38 14.76 0.00 3.96
3075 3161 2.053244 ACCATGGTTGCATTTTGGGAA 58.947 42.857 13.00 0.00 0.00 3.97
3091 3177 8.764287 CATTTTGGGAATGAACAAACTAAAGAC 58.236 33.333 0.00 0.00 36.42 3.01
3145 3231 7.864686 TGCGAATATAATAATATCATGCCTGC 58.135 34.615 0.00 0.00 0.00 4.85
3190 3276 4.307032 AGATGCTCCTTTTCCTTGCTAA 57.693 40.909 0.00 0.00 0.00 3.09
3194 3280 5.179452 TGCTCCTTTTCCTTGCTAACTAT 57.821 39.130 0.00 0.00 0.00 2.12
3196 3282 5.186198 GCTCCTTTTCCTTGCTAACTATCA 58.814 41.667 0.00 0.00 0.00 2.15
3338 3424 8.204160 TGATGATTCACCGTATCTAAATTCTGT 58.796 33.333 0.00 0.00 0.00 3.41
3354 3440 4.301072 TTCTGTAATCCCCAAGTTCTGG 57.699 45.455 0.00 0.00 45.97 3.86
3377 3463 3.915437 ATCTTTTGTAAGGTTGTGCCG 57.085 42.857 0.00 0.00 43.70 5.69
3467 3553 6.096705 TGCTAATCCCATTATGTTTCCACTTG 59.903 38.462 0.00 0.00 0.00 3.16
3524 3610 4.884744 TGGACGGATGTTTTCAGAAAAGAA 59.115 37.500 8.67 1.29 0.00 2.52
3566 3652 3.125316 CTGCAAAAACTGTGTCAATGGG 58.875 45.455 0.00 0.00 0.00 4.00
3962 4051 3.193479 GGGGGTGACTTCAAATCATCAAC 59.807 47.826 0.00 0.00 0.00 3.18
3997 4086 4.166725 TGGGCAAAGAGTCATCCTCATATT 59.833 41.667 0.00 0.00 43.12 1.28
4163 4252 8.652810 ACAAAATTTTCAAGTTCTGATTGGAG 57.347 30.769 0.00 0.00 32.78 3.86
4304 4393 5.074804 TGATCATGATGAATGGGATCCAAC 58.925 41.667 14.30 0.00 36.95 3.77
4361 4450 1.056660 TTGTCCTTCCCCTGTCAGAC 58.943 55.000 0.00 0.00 0.00 3.51
4579 4668 5.830991 TCAAGCTTTTTAGGCCTTAGAAACA 59.169 36.000 12.58 0.00 0.00 2.83
4580 4669 5.707242 AGCTTTTTAGGCCTTAGAAACAC 57.293 39.130 12.58 5.10 0.00 3.32
4626 4715 4.716784 AGCAGTATCTCCAACTTCCATGTA 59.283 41.667 0.00 0.00 0.00 2.29
4637 4729 5.240891 CAACTTCCATGTAGAGAGCAAGAA 58.759 41.667 0.00 0.00 0.00 2.52
4693 4785 8.680001 TGAATTCCATATGTTCAACTTCAGATG 58.320 33.333 2.27 0.00 34.39 2.90
4739 4831 2.564771 CTTTTGTGACTCTGCTGTCCA 58.435 47.619 0.00 0.00 36.21 4.02
5056 5148 6.262496 GTCATCATCACATCATGTCCAATCTT 59.738 38.462 0.00 0.00 0.00 2.40
5059 5151 5.947566 TCATCACATCATGTCCAATCTTGTT 59.052 36.000 0.00 0.00 0.00 2.83
5164 5256 1.576421 GAAGGCAACACCAAGAGCG 59.424 57.895 0.00 0.00 43.14 5.03
5293 5388 4.326826 TCCATTGTTCCTTGAAGTGCTAG 58.673 43.478 0.00 0.00 0.00 3.42
5295 5390 5.012664 TCCATTGTTCCTTGAAGTGCTAGTA 59.987 40.000 0.00 0.00 0.00 1.82
5296 5391 5.882557 CCATTGTTCCTTGAAGTGCTAGTAT 59.117 40.000 0.00 0.00 0.00 2.12
5297 5392 6.375455 CCATTGTTCCTTGAAGTGCTAGTATT 59.625 38.462 0.00 0.00 0.00 1.89
5415 5510 1.188863 CCTTGGGGCAGATTTTCCAG 58.811 55.000 0.00 0.00 0.00 3.86
5458 5554 1.961378 CCTTGTGCATGCAGCTTCA 59.039 52.632 23.41 13.00 45.94 3.02
5488 5584 1.965930 GTGATGGAACGCCTGCACA 60.966 57.895 0.00 0.00 38.19 4.57
5569 5665 1.292541 GGTCAGGGTCGTGAACTCC 59.707 63.158 1.91 0.00 30.85 3.85
5585 5681 2.452505 ACTCCTAGCAGAGGTCACTTC 58.547 52.381 4.72 0.00 46.76 3.01
5607 5703 1.075212 TGATGCCATCCTCAACAACCA 59.925 47.619 1.49 0.00 0.00 3.67
5681 5777 0.749091 CCATCCTGCGGAAATCAGCA 60.749 55.000 7.94 7.94 44.34 4.41
5689 5785 0.953471 CGGAAATCAGCAACACCCGA 60.953 55.000 0.00 0.00 37.87 5.14
5722 5818 3.270027 TGGCATCGAAGACCAGTTTATG 58.730 45.455 0.00 0.00 42.51 1.90
5728 5824 4.312443 TCGAAGACCAGTTTATGTGGAAC 58.688 43.478 0.00 0.00 38.57 3.62
5742 5838 7.718334 TTATGTGGAACTTATCTGACTCAGA 57.282 36.000 11.24 11.24 40.80 3.27
5804 5900 4.643334 GGGGTACTTTTGAGTGAACACTTT 59.357 41.667 8.87 0.00 42.66 2.66
5810 5906 2.341846 TGAGTGAACACTTTGGGACC 57.658 50.000 8.87 0.00 42.66 4.46
5837 5933 3.932289 CGTTGAAACGCGAGGTCT 58.068 55.556 15.93 0.00 46.06 3.85
5838 5934 2.222592 CGTTGAAACGCGAGGTCTT 58.777 52.632 15.93 0.00 46.06 3.01
5839 5935 0.111266 CGTTGAAACGCGAGGTCTTG 60.111 55.000 15.93 0.00 46.06 3.02
5968 6068 4.142093 ACATGCTAACTGAATGCCCATTTC 60.142 41.667 0.00 0.00 35.02 2.17
5970 6070 3.444742 TGCTAACTGAATGCCCATTTCTG 59.555 43.478 0.00 0.00 0.00 3.02
5988 6088 1.485480 CTGAGACAGGTCTGGCATGAT 59.515 52.381 6.68 0.00 42.32 2.45
5997 6097 1.483827 GTCTGGCATGATGTCCTCTCA 59.516 52.381 0.00 0.00 0.00 3.27
6089 6189 2.107141 CGCCGGGGAAGACATCTC 59.893 66.667 14.46 0.00 0.00 2.75
6090 6190 2.721167 CGCCGGGGAAGACATCTCA 61.721 63.158 14.46 0.00 0.00 3.27
6095 6195 2.103373 CGGGGAAGACATCTCAAGAGA 58.897 52.381 1.74 1.74 42.37 3.10
6138 6241 1.135915 ACTATGTGGCGAGCTGAGAAG 59.864 52.381 0.00 0.00 0.00 2.85
6155 6258 2.158957 AGAAGCGACTGTGGTCTTGAAA 60.159 45.455 4.77 0.00 40.10 2.69
6203 6306 1.789464 GCAGTCGAATCGATCATGGTC 59.211 52.381 9.10 0.00 38.42 4.02
6210 6313 1.822186 TCGATCATGGTCGAGGCGA 60.822 57.895 26.62 4.67 44.87 5.54
6248 6351 4.821589 GCGAAGGCTCTCCACCGG 62.822 72.222 0.00 0.00 35.83 5.28
6250 6353 2.943978 CGAAGGCTCTCCACCGGTT 61.944 63.158 2.97 0.00 33.74 4.44
6251 6354 1.601419 CGAAGGCTCTCCACCGGTTA 61.601 60.000 2.97 0.00 33.74 2.85
6253 6356 0.831307 AAGGCTCTCCACCGGTTATC 59.169 55.000 2.97 0.00 33.74 1.75
6254 6357 0.325296 AGGCTCTCCACCGGTTATCA 60.325 55.000 2.97 0.00 33.74 2.15
6255 6358 0.179081 GGCTCTCCACCGGTTATCAC 60.179 60.000 2.97 0.00 0.00 3.06
6257 6360 2.029623 GCTCTCCACCGGTTATCACTA 58.970 52.381 2.97 0.00 0.00 2.74
6258 6361 2.223758 GCTCTCCACCGGTTATCACTAC 60.224 54.545 2.97 0.00 0.00 2.73
6259 6362 3.021695 CTCTCCACCGGTTATCACTACA 58.978 50.000 2.97 0.00 0.00 2.74
6261 6364 3.383505 TCTCCACCGGTTATCACTACATG 59.616 47.826 2.97 0.00 0.00 3.21
6262 6365 2.159014 TCCACCGGTTATCACTACATGC 60.159 50.000 2.97 0.00 0.00 4.06
6263 6366 2.419436 CCACCGGTTATCACTACATGCA 60.419 50.000 2.97 0.00 0.00 3.96
6264 6367 2.607635 CACCGGTTATCACTACATGCAC 59.392 50.000 2.97 0.00 0.00 4.57
6265 6368 1.858458 CCGGTTATCACTACATGCACG 59.142 52.381 0.00 0.00 0.00 5.34
6266 6369 1.858458 CGGTTATCACTACATGCACGG 59.142 52.381 0.00 0.00 0.00 4.94
6267 6370 2.210116 GGTTATCACTACATGCACGGG 58.790 52.381 0.00 0.00 0.00 5.28
6268 6371 1.597663 GTTATCACTACATGCACGGGC 59.402 52.381 0.34 0.34 41.68 6.13
6269 6372 0.105964 TATCACTACATGCACGGGCC 59.894 55.000 7.46 0.00 40.13 5.80
6270 6373 2.608970 ATCACTACATGCACGGGCCC 62.609 60.000 13.57 13.57 40.13 5.80
6271 6374 4.109675 ACTACATGCACGGGCCCC 62.110 66.667 18.66 2.06 40.13 5.80
6272 6375 4.108299 CTACATGCACGGGCCCCA 62.108 66.667 18.66 9.31 40.13 4.96
6273 6376 3.415983 TACATGCACGGGCCCCAT 61.416 61.111 18.66 11.61 40.13 4.00
6274 6377 3.712771 TACATGCACGGGCCCCATG 62.713 63.158 28.35 28.35 41.49 3.66
6275 6378 4.818863 CATGCACGGGCCCCATGA 62.819 66.667 26.95 12.56 38.84 3.07
6276 6379 4.511246 ATGCACGGGCCCCATGAG 62.511 66.667 22.38 8.45 40.13 2.90
6278 6381 4.864334 GCACGGGCCCCATGAGAG 62.864 72.222 22.38 6.95 0.00 3.20
6279 6382 3.402681 CACGGGCCCCATGAGAGT 61.403 66.667 18.66 2.65 0.00 3.24
6280 6383 3.402681 ACGGGCCCCATGAGAGTG 61.403 66.667 18.66 0.08 0.00 3.51
6281 6384 4.864334 CGGGCCCCATGAGAGTGC 62.864 72.222 18.66 0.00 0.00 4.40
6282 6385 3.415087 GGGCCCCATGAGAGTGCT 61.415 66.667 12.23 0.00 0.00 4.40
6283 6386 2.072487 GGGCCCCATGAGAGTGCTA 61.072 63.158 12.23 0.00 0.00 3.49
6284 6387 1.449353 GGCCCCATGAGAGTGCTAG 59.551 63.158 0.00 0.00 0.00 3.42
6285 6388 1.227793 GCCCCATGAGAGTGCTAGC 60.228 63.158 8.10 8.10 0.00 3.42
6286 6389 1.694133 GCCCCATGAGAGTGCTAGCT 61.694 60.000 17.23 0.00 0.00 3.32
6287 6390 0.392336 CCCCATGAGAGTGCTAGCTC 59.608 60.000 17.23 12.88 35.82 4.09
6288 6391 0.392336 CCCATGAGAGTGCTAGCTCC 59.608 60.000 17.23 6.57 36.20 4.70
6289 6392 1.412079 CCATGAGAGTGCTAGCTCCT 58.588 55.000 17.23 11.67 36.20 3.69
6290 6393 1.340889 CCATGAGAGTGCTAGCTCCTC 59.659 57.143 17.23 19.35 36.20 3.71
6291 6394 2.309613 CATGAGAGTGCTAGCTCCTCT 58.690 52.381 27.10 27.10 38.25 3.69
6292 6395 2.523325 TGAGAGTGCTAGCTCCTCTT 57.477 50.000 27.31 16.84 35.76 2.85
6293 6396 2.098614 TGAGAGTGCTAGCTCCTCTTG 58.901 52.381 27.31 0.00 35.76 3.02
6294 6397 2.099405 GAGAGTGCTAGCTCCTCTTGT 58.901 52.381 27.31 13.72 35.76 3.16
6295 6398 3.283751 GAGAGTGCTAGCTCCTCTTGTA 58.716 50.000 27.31 0.88 35.76 2.41
6296 6399 3.888930 GAGAGTGCTAGCTCCTCTTGTAT 59.111 47.826 27.31 13.18 35.76 2.29
6297 6400 5.055265 AGAGTGCTAGCTCCTCTTGTATA 57.945 43.478 23.55 0.00 36.20 1.47
6298 6401 5.070001 AGAGTGCTAGCTCCTCTTGTATAG 58.930 45.833 23.55 0.00 36.20 1.31
6304 6407 6.183360 TGCTAGCTCCTCTTGTATAGTTCTTG 60.183 42.308 17.23 0.00 0.00 3.02
6316 6419 8.740123 TTGTATAGTTCTTGGTTTGTCTTTGA 57.260 30.769 0.00 0.00 0.00 2.69
6321 6424 7.410120 AGTTCTTGGTTTGTCTTTGATTTCT 57.590 32.000 0.00 0.00 0.00 2.52
6322 6425 7.840931 AGTTCTTGGTTTGTCTTTGATTTCTT 58.159 30.769 0.00 0.00 0.00 2.52
6323 6426 7.976175 AGTTCTTGGTTTGTCTTTGATTTCTTC 59.024 33.333 0.00 0.00 0.00 2.87
6324 6427 6.494842 TCTTGGTTTGTCTTTGATTTCTTCG 58.505 36.000 0.00 0.00 0.00 3.79
6325 6428 5.828299 TGGTTTGTCTTTGATTTCTTCGT 57.172 34.783 0.00 0.00 0.00 3.85
6326 6429 6.928979 TGGTTTGTCTTTGATTTCTTCGTA 57.071 33.333 0.00 0.00 0.00 3.43
6327 6430 6.954944 TGGTTTGTCTTTGATTTCTTCGTAG 58.045 36.000 0.00 0.00 0.00 3.51
6328 6431 6.764085 TGGTTTGTCTTTGATTTCTTCGTAGA 59.236 34.615 0.00 0.00 0.00 2.59
6329 6432 7.070183 GGTTTGTCTTTGATTTCTTCGTAGAC 58.930 38.462 0.00 0.00 37.65 2.59
6330 6433 7.041984 GGTTTGTCTTTGATTTCTTCGTAGACT 60.042 37.037 0.00 0.00 37.84 3.24
6331 6434 8.975439 GTTTGTCTTTGATTTCTTCGTAGACTA 58.025 33.333 0.00 0.00 37.84 2.59
6332 6435 8.744008 TTGTCTTTGATTTCTTCGTAGACTAG 57.256 34.615 0.00 0.00 37.84 2.57
6333 6436 7.883217 TGTCTTTGATTTCTTCGTAGACTAGT 58.117 34.615 0.00 0.00 37.84 2.57
6334 6437 9.006839 TGTCTTTGATTTCTTCGTAGACTAGTA 57.993 33.333 0.00 0.00 37.84 1.82
6335 6438 9.493206 GTCTTTGATTTCTTCGTAGACTAGTAG 57.507 37.037 0.00 0.00 35.81 2.57
6336 6439 8.675504 TCTTTGATTTCTTCGTAGACTAGTAGG 58.324 37.037 0.00 0.00 34.32 3.18
6337 6440 6.374565 TGATTTCTTCGTAGACTAGTAGGC 57.625 41.667 0.00 0.00 34.32 3.93
6338 6441 6.120905 TGATTTCTTCGTAGACTAGTAGGCT 58.879 40.000 11.17 11.17 37.37 4.58
6339 6442 6.602406 TGATTTCTTCGTAGACTAGTAGGCTT 59.398 38.462 11.75 0.00 33.88 4.35
6340 6443 6.434018 TTTCTTCGTAGACTAGTAGGCTTC 57.566 41.667 11.75 5.07 33.88 3.86
6345 6448 4.080695 TCGTAGACTAGTAGGCTTCCTTGA 60.081 45.833 11.75 0.00 33.88 3.02
6346 6449 4.273969 CGTAGACTAGTAGGCTTCCTTGAG 59.726 50.000 11.75 0.00 33.88 3.02
6351 6459 6.724905 AGACTAGTAGGCTTCCTTGAGTTTTA 59.275 38.462 0.00 0.00 34.61 1.52
6352 6460 7.234988 AGACTAGTAGGCTTCCTTGAGTTTTAA 59.765 37.037 0.00 0.00 34.61 1.52
6386 6499 9.778741 TTAGCTCTGGTTTCTATTTATACCATG 57.221 33.333 0.00 0.00 39.74 3.66
6406 6519 3.548770 TGGATCCAATCAGATGTGCTTC 58.451 45.455 13.46 0.00 0.00 3.86
6484 6598 3.131933 TCCTGGGTTTGTTGTTGATGTTG 59.868 43.478 0.00 0.00 0.00 3.33
6637 6757 3.879682 CACGCGTGGATGGCATGG 61.880 66.667 31.15 0.81 0.00 3.66
6652 6842 2.479837 GCATGGGCATGTTGATTGATG 58.520 47.619 0.00 0.00 40.80 3.07
6681 6871 6.749578 GCTTTGGGTATTTTGGTTTTGTTTTG 59.250 34.615 0.00 0.00 0.00 2.44
6684 6874 6.481643 TGGGTATTTTGGTTTTGTTTTGGAA 58.518 32.000 0.00 0.00 0.00 3.53
6687 6877 7.971168 GGGTATTTTGGTTTTGTTTTGGAAAAG 59.029 33.333 0.00 0.00 0.00 2.27
6688 6878 7.486551 GGTATTTTGGTTTTGTTTTGGAAAAGC 59.513 33.333 0.00 0.00 39.91 3.51
6697 6887 5.652994 TGTTTTGGAAAAGCAGTTGTACT 57.347 34.783 0.00 0.00 0.00 2.73
6742 6932 1.002792 GACAAGTTGGCGGTCAAAGAC 60.003 52.381 7.96 0.00 37.08 3.01
6743 6933 1.308998 CAAGTTGGCGGTCAAAGACT 58.691 50.000 0.00 0.00 37.08 3.24
6786 6976 0.316841 CCAAAAGCCTTTTGCCGCTA 59.683 50.000 21.75 0.00 46.58 4.26
6814 7004 0.798776 ATGCGAGCTTTCGTTTGGAG 59.201 50.000 0.00 0.00 35.26 3.86
6851 7041 4.342862 ACTGCACAGTACTTTCTCACAT 57.657 40.909 0.35 0.00 40.43 3.21
6854 7044 5.696724 ACTGCACAGTACTTTCTCACATTAC 59.303 40.000 0.35 0.00 40.43 1.89
6880 7075 2.964464 AGGTACATCTCATCCTCTGCAG 59.036 50.000 7.63 7.63 0.00 4.41
6884 7079 1.039068 ATCTCATCCTCTGCAGACCG 58.961 55.000 13.74 5.98 0.00 4.79
6888 7083 2.430610 ATCCTCTGCAGACCGGAGC 61.431 63.158 24.30 10.17 44.21 4.70
6906 7105 2.297701 AGCTCACGCTTTTCTTGGAAA 58.702 42.857 0.00 0.00 46.47 3.13
6918 7117 5.961398 TTTCTTGGAAATATCTACCCGGA 57.039 39.130 0.73 0.00 0.00 5.14
6990 7199 3.193471 AAAAACAATTCTGCGCGGG 57.807 47.368 17.88 4.96 0.00 6.13
7009 7218 0.657368 GCCAAACAAACACGAGAGCG 60.657 55.000 0.00 0.00 44.79 5.03
7019 7228 2.579787 CGAGAGCGTAACCTGGCG 60.580 66.667 0.00 0.00 0.00 5.69
7020 7229 2.202756 GAGAGCGTAACCTGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
7022 7231 2.813908 GAGCGTAACCTGGCGGTG 60.814 66.667 1.73 0.00 44.73 4.94
7028 7322 1.117150 GTAACCTGGCGGTGATAGGA 58.883 55.000 0.00 0.00 44.73 2.94
7036 7330 2.336809 GGTGATAGGAGAGCGGCG 59.663 66.667 0.51 0.51 0.00 6.46
7044 7338 4.560856 GAGAGCGGCGACAGCGAT 62.561 66.667 12.98 0.00 46.35 4.58
7063 7357 2.870161 CGTCGACGGCTCGTTCTG 60.870 66.667 29.70 0.00 41.37 3.02
7064 7358 2.559840 GTCGACGGCTCGTTCTGA 59.440 61.111 0.00 0.00 41.37 3.27
7065 7359 1.136984 GTCGACGGCTCGTTCTGAT 59.863 57.895 0.00 0.00 41.37 2.90
7070 7364 2.892425 GGCTCGTTCTGATGGCGG 60.892 66.667 0.00 0.00 0.00 6.13
7077 7371 0.249398 GTTCTGATGGCGGTAGTGGT 59.751 55.000 0.00 0.00 0.00 4.16
7085 7379 2.256158 CGGTAGTGGTCGTTCGCA 59.744 61.111 0.00 0.00 0.00 5.10
7090 7384 0.108992 TAGTGGTCGTTCGCATGGTC 60.109 55.000 0.00 0.00 0.00 4.02
7094 7388 1.078759 GGTCGTTCGCATGGTCTCAG 61.079 60.000 0.00 0.00 0.00 3.35
7104 7398 3.247886 CGCATGGTCTCAGAATCTTGATG 59.752 47.826 0.00 0.00 0.00 3.07
7139 7437 8.611654 TTATGTTTGAGGTACTTTGTACTTCC 57.388 34.615 14.41 3.81 41.55 3.46
7141 7439 3.947910 TGAGGTACTTTGTACTTCCGG 57.052 47.619 14.41 0.00 41.55 5.14
7143 7441 3.006110 TGAGGTACTTTGTACTTCCGGTG 59.994 47.826 14.41 0.00 41.55 4.94
7161 7459 8.615878 TTCCGGTGAACTTTGATAATATATGG 57.384 34.615 0.00 0.00 0.00 2.74
7189 7487 5.499139 TTTCACGAAGAAAAACATGAGCT 57.501 34.783 0.00 0.00 43.00 4.09
7191 7489 5.845985 TCACGAAGAAAAACATGAGCTAG 57.154 39.130 0.00 0.00 0.00 3.42
7193 7491 6.452242 TCACGAAGAAAAACATGAGCTAGTA 58.548 36.000 0.00 0.00 0.00 1.82
7194 7492 6.926826 TCACGAAGAAAAACATGAGCTAGTAA 59.073 34.615 0.00 0.00 0.00 2.24
7196 7494 7.530861 CACGAAGAAAAACATGAGCTAGTAAAC 59.469 37.037 0.00 0.00 0.00 2.01
7200 7614 8.089115 AGAAAAACATGAGCTAGTAAACTGTC 57.911 34.615 0.00 0.00 0.00 3.51
7204 7629 5.665459 ACATGAGCTAGTAAACTGTCATCC 58.335 41.667 0.00 0.00 0.00 3.51
7217 7642 0.997196 GTCATCCGAAACGTGGTAGC 59.003 55.000 0.00 0.00 0.00 3.58
7222 7647 0.860533 CCGAAACGTGGTAGCGAAAA 59.139 50.000 0.00 0.00 35.59 2.29
7225 7650 2.410730 CGAAACGTGGTAGCGAAAAGAT 59.589 45.455 0.00 0.00 35.59 2.40
7288 7714 1.086634 GTACGTAGCCTCGACCTCGT 61.087 60.000 0.00 0.00 40.80 4.18
7315 7823 0.249489 CACGGCGATCCTTTCTAGGG 60.249 60.000 16.62 0.00 42.26 3.53
7316 7824 0.396695 ACGGCGATCCTTTCTAGGGA 60.397 55.000 16.62 0.00 42.26 4.20
7317 7825 0.315568 CGGCGATCCTTTCTAGGGAG 59.684 60.000 0.00 0.00 42.26 4.30
7318 7826 1.415200 GGCGATCCTTTCTAGGGAGT 58.585 55.000 0.00 0.00 42.26 3.85
7327 7835 6.015991 TCCTTTCTAGGGAGTAGTAGAAGG 57.984 45.833 0.00 0.00 42.26 3.46
7394 7906 0.524816 TCGCGTAGATTGTTCCTCGC 60.525 55.000 5.77 0.00 39.44 5.03
7395 7907 1.480219 CGCGTAGATTGTTCCTCGCC 61.480 60.000 0.00 0.00 39.57 5.54
7396 7908 0.179108 GCGTAGATTGTTCCTCGCCT 60.179 55.000 0.00 0.00 38.01 5.52
7397 7909 1.841450 CGTAGATTGTTCCTCGCCTC 58.159 55.000 0.00 0.00 0.00 4.70
7398 7910 1.841450 GTAGATTGTTCCTCGCCTCG 58.159 55.000 0.00 0.00 0.00 4.63
7399 7911 0.102481 TAGATTGTTCCTCGCCTCGC 59.898 55.000 0.00 0.00 0.00 5.03
7400 7912 2.125106 ATTGTTCCTCGCCTCGCC 60.125 61.111 0.00 0.00 0.00 5.54
7401 7913 2.579684 GATTGTTCCTCGCCTCGCCT 62.580 60.000 0.00 0.00 0.00 5.52
7421 7933 1.347707 TCCTCGCCTCATTTTGAGTGT 59.652 47.619 4.00 0.00 42.80 3.55
7423 7935 2.095567 CCTCGCCTCATTTTGAGTGTTG 60.096 50.000 4.00 0.00 42.80 3.33
7460 7987 5.008316 GGGACGGGAACAACAATACAATATC 59.992 44.000 0.00 0.00 0.00 1.63
7461 7988 5.008316 GGACGGGAACAACAATACAATATCC 59.992 44.000 0.00 0.00 0.00 2.59
7463 7990 6.126409 ACGGGAACAACAATACAATATCCAT 58.874 36.000 0.00 0.00 0.00 3.41
7464 7991 6.039270 ACGGGAACAACAATACAATATCCATG 59.961 38.462 0.00 0.00 0.00 3.66
7521 8055 3.550275 CGTTTCTTCTCACGAACTTGTCA 59.450 43.478 0.00 0.00 38.76 3.58
7523 8057 2.727777 TCTTCTCACGAACTTGTCACG 58.272 47.619 0.00 0.00 0.00 4.35
7524 8058 1.190323 CTTCTCACGAACTTGTCACGC 59.810 52.381 0.00 0.00 0.00 5.34
7541 8075 0.989164 CGCGTACGCTGAAAATGAGA 59.011 50.000 34.69 0.00 39.32 3.27
7542 8076 1.266404 CGCGTACGCTGAAAATGAGAC 60.266 52.381 34.69 4.72 39.32 3.36
7543 8077 1.060698 GCGTACGCTGAAAATGAGACC 59.939 52.381 31.95 0.00 38.26 3.85
7544 8078 2.607187 CGTACGCTGAAAATGAGACCT 58.393 47.619 0.52 0.00 0.00 3.85
7545 8079 2.345641 CGTACGCTGAAAATGAGACCTG 59.654 50.000 0.52 0.00 0.00 4.00
7546 8080 2.839486 ACGCTGAAAATGAGACCTGA 57.161 45.000 0.00 0.00 0.00 3.86
7547 8081 3.340814 ACGCTGAAAATGAGACCTGAT 57.659 42.857 0.00 0.00 0.00 2.90
7548 8082 3.005554 ACGCTGAAAATGAGACCTGATG 58.994 45.455 0.00 0.00 0.00 3.07
7549 8083 3.264947 CGCTGAAAATGAGACCTGATGA 58.735 45.455 0.00 0.00 0.00 2.92
7550 8084 3.309138 CGCTGAAAATGAGACCTGATGAG 59.691 47.826 0.00 0.00 0.00 2.90
7551 8085 4.260170 GCTGAAAATGAGACCTGATGAGT 58.740 43.478 0.00 0.00 0.00 3.41
7552 8086 4.094590 GCTGAAAATGAGACCTGATGAGTG 59.905 45.833 0.00 0.00 0.00 3.51
7553 8087 4.582869 TGAAAATGAGACCTGATGAGTGG 58.417 43.478 0.00 0.00 0.00 4.00
7554 8088 4.286808 TGAAAATGAGACCTGATGAGTGGA 59.713 41.667 0.00 0.00 0.00 4.02
7555 8089 5.045359 TGAAAATGAGACCTGATGAGTGGAT 60.045 40.000 0.00 0.00 0.00 3.41
7556 8090 4.418973 AATGAGACCTGATGAGTGGATG 57.581 45.455 0.00 0.00 0.00 3.51
7557 8091 1.483827 TGAGACCTGATGAGTGGATGC 59.516 52.381 0.00 0.00 0.00 3.91
7558 8092 1.761784 GAGACCTGATGAGTGGATGCT 59.238 52.381 0.00 0.00 0.00 3.79
7559 8093 2.961741 GAGACCTGATGAGTGGATGCTA 59.038 50.000 0.00 0.00 0.00 3.49
7560 8094 3.577848 GAGACCTGATGAGTGGATGCTAT 59.422 47.826 0.00 0.00 0.00 2.97
7561 8095 3.324268 AGACCTGATGAGTGGATGCTATG 59.676 47.826 0.00 0.00 0.00 2.23
7562 8096 3.311990 ACCTGATGAGTGGATGCTATGA 58.688 45.455 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 96 0.031449 TTTTTGCGTTGCAGTAGGGC 59.969 50.000 0.00 0.00 40.61 5.19
439 476 1.947146 CGTCGTTCGTTGGTGCTCA 60.947 57.895 0.00 0.00 34.52 4.26
450 487 1.574702 CCCCCTTGCTTTCGTCGTTC 61.575 60.000 0.00 0.00 0.00 3.95
455 492 0.476771 TCTTTCCCCCTTGCTTTCGT 59.523 50.000 0.00 0.00 0.00 3.85
509 548 1.066071 TCGGATTTCGTGCCATTACCA 60.066 47.619 0.00 0.00 40.32 3.25
526 565 3.636313 TAGTGAGCGGCGGTTTCGG 62.636 63.158 14.71 0.00 36.79 4.30
539 578 1.576451 TTAGCCGTCGTGCGTAGTGA 61.576 55.000 0.00 0.00 39.32 3.41
802 844 6.183360 GCAATAATCGTGTGGTCTGTATCAAA 60.183 38.462 0.00 0.00 0.00 2.69
803 845 5.293324 GCAATAATCGTGTGGTCTGTATCAA 59.707 40.000 0.00 0.00 0.00 2.57
804 846 4.808895 GCAATAATCGTGTGGTCTGTATCA 59.191 41.667 0.00 0.00 0.00 2.15
805 847 4.808895 TGCAATAATCGTGTGGTCTGTATC 59.191 41.667 0.00 0.00 0.00 2.24
806 848 4.765273 TGCAATAATCGTGTGGTCTGTAT 58.235 39.130 0.00 0.00 0.00 2.29
807 849 4.195225 TGCAATAATCGTGTGGTCTGTA 57.805 40.909 0.00 0.00 0.00 2.74
808 850 3.052455 TGCAATAATCGTGTGGTCTGT 57.948 42.857 0.00 0.00 0.00 3.41
809 851 4.621068 AATGCAATAATCGTGTGGTCTG 57.379 40.909 0.00 0.00 0.00 3.51
810 852 5.182950 TCAAAATGCAATAATCGTGTGGTCT 59.817 36.000 0.00 0.00 0.00 3.85
811 853 5.398169 TCAAAATGCAATAATCGTGTGGTC 58.602 37.500 0.00 0.00 0.00 4.02
812 854 5.384063 TCAAAATGCAATAATCGTGTGGT 57.616 34.783 0.00 0.00 0.00 4.16
813 855 6.263615 CATCAAAATGCAATAATCGTGTGG 57.736 37.500 0.00 0.00 0.00 4.17
929 971 1.883544 TTTGCGCGTTCGGTTCTCA 60.884 52.632 8.43 0.00 35.95 3.27
1106 1151 4.814041 AGCCTGGAGAGGAGGGCC 62.814 72.222 0.00 0.00 45.07 5.80
1241 1289 0.107848 AGAATTAACTCCCCGGCGTG 60.108 55.000 6.01 0.00 0.00 5.34
1248 1296 4.133013 TCCTAACGCAGAATTAACTCCC 57.867 45.455 0.00 0.00 0.00 4.30
1257 1305 5.815740 GTCCAATTAGAATCCTAACGCAGAA 59.184 40.000 0.00 0.00 37.67 3.02
1264 1312 5.961398 TTCCGGTCCAATTAGAATCCTAA 57.039 39.130 0.00 0.00 39.04 2.69
1266 1314 4.718961 CATTCCGGTCCAATTAGAATCCT 58.281 43.478 0.00 0.00 0.00 3.24
1267 1315 3.253432 GCATTCCGGTCCAATTAGAATCC 59.747 47.826 0.00 0.00 0.00 3.01
1314 1363 6.899393 AAATGCCATGAACTCTTCTGTTTA 57.101 33.333 0.00 0.00 0.00 2.01
1346 1395 5.887598 ACATCGAGAATGAAATGATCCCAAA 59.112 36.000 0.00 0.00 38.83 3.28
1361 1410 4.822350 CACCAGATCCTACTACATCGAGAA 59.178 45.833 0.00 0.00 0.00 2.87
1369 1418 5.855740 AAACTAGCACCAGATCCTACTAC 57.144 43.478 0.00 0.00 0.00 2.73
1385 1434 2.527442 GCGCACAGCCTTTAAACTAG 57.473 50.000 0.30 0.00 40.81 2.57
1398 1447 2.575893 TAGGGAACGGAAGCGCACA 61.576 57.895 11.47 0.00 0.00 4.57
1418 1467 7.886629 ACAGATGGAAAACAGCAACATATAT 57.113 32.000 0.00 0.00 38.15 0.86
1421 1470 5.048083 GGAACAGATGGAAAACAGCAACATA 60.048 40.000 0.00 0.00 38.15 2.29
1428 1477 4.580167 TCACAAGGAACAGATGGAAAACAG 59.420 41.667 0.00 0.00 0.00 3.16
1459 1508 1.986378 CTCAGAAACCGAACGTGCTAG 59.014 52.381 0.00 0.00 0.00 3.42
1461 1510 0.387929 TCTCAGAAACCGAACGTGCT 59.612 50.000 0.00 0.00 0.00 4.40
1465 1514 1.000607 TGACCTCTCAGAAACCGAACG 60.001 52.381 0.00 0.00 0.00 3.95
1478 1527 2.929301 TCCTAAAACCCCATGACCTCT 58.071 47.619 0.00 0.00 0.00 3.69
1595 1646 6.042552 AGGATGAAACTCTCACTCAAGAAAGA 59.957 38.462 0.00 0.00 36.69 2.52
1734 1785 1.208052 TGTTAGCAGCATCCTGTCTCC 59.792 52.381 0.00 0.00 41.26 3.71
1748 1802 0.036952 TCAGCTCTGCCTGTGTTAGC 60.037 55.000 0.00 0.00 34.47 3.09
1749 1803 1.547820 TCTCAGCTCTGCCTGTGTTAG 59.452 52.381 0.00 0.00 34.47 2.34
1750 1804 1.632589 TCTCAGCTCTGCCTGTGTTA 58.367 50.000 0.00 0.00 34.47 2.41
1757 1811 2.418280 GCTTAGTTTTCTCAGCTCTGCC 59.582 50.000 0.00 0.00 42.11 4.85
1761 1815 2.290323 TGGGGCTTAGTTTTCTCAGCTC 60.290 50.000 0.00 0.00 44.40 4.09
1794 1853 5.337788 AGAAAGACAGGAGTTCCAGTAGAT 58.662 41.667 0.28 0.00 35.77 1.98
1889 1949 0.893727 CGCCCCCTTTAAGCTGTGTT 60.894 55.000 0.00 0.00 0.00 3.32
1893 1953 0.893727 ACAACGCCCCCTTTAAGCTG 60.894 55.000 0.00 0.00 0.00 4.24
1894 1954 0.893727 CACAACGCCCCCTTTAAGCT 60.894 55.000 0.00 0.00 0.00 3.74
1951 2011 0.541392 AGCAGACAGGTTGACACACA 59.459 50.000 0.00 0.00 0.00 3.72
1952 2012 1.668419 AAGCAGACAGGTTGACACAC 58.332 50.000 0.00 0.00 36.40 3.82
1966 2026 7.201767 CCTTTGAGTAGGAATTCCAATAAGCAG 60.202 40.741 26.22 13.30 37.50 4.24
1985 2045 9.727627 GAATTTAGAGCATATTGAACCTTTGAG 57.272 33.333 0.00 0.00 0.00 3.02
2080 2140 0.685458 ATTCCCAGCCCAGCATTGAC 60.685 55.000 0.00 0.00 0.00 3.18
2099 2159 5.249622 TGAATACAAGTCATCAGGTGGGTTA 59.750 40.000 0.00 0.00 0.00 2.85
2243 2307 1.312815 GCATAGGAAGTGATGCCCAC 58.687 55.000 0.00 0.00 42.18 4.61
2480 2544 2.456119 GGACTGATCCGTTGCAGCG 61.456 63.158 16.72 16.72 34.48 5.18
2713 2777 7.836685 AGGATCAATAGTGAGAAGAGTCTAACA 59.163 37.037 0.00 0.00 37.68 2.41
2715 2779 8.055790 TGAGGATCAATAGTGAGAAGAGTCTAA 58.944 37.037 0.00 0.00 45.97 2.10
2741 2805 7.450903 TCATGATTGTGATATTCTGCAGAGAT 58.549 34.615 17.43 14.24 0.00 2.75
2807 2889 5.049167 TGCAATTTCAAATGGTGTCTGAAC 58.951 37.500 0.00 0.00 0.00 3.18
2867 2949 5.470845 AGCACTAAACATTTGTATCGAGC 57.529 39.130 0.00 0.00 0.00 5.03
2948 3034 6.034591 CCAGAAAGGTTGACTACTGTATACG 58.965 44.000 0.00 0.00 34.25 3.06
2991 3077 3.993736 ACAACAACAACAACAAAGCCTTC 59.006 39.130 0.00 0.00 0.00 3.46
2998 3084 5.833082 ACTGTACAACAACAACAACAACAA 58.167 33.333 0.00 0.00 0.00 2.83
2999 3085 5.440234 ACTGTACAACAACAACAACAACA 57.560 34.783 0.00 0.00 0.00 3.33
3000 3086 9.724839 ATATAACTGTACAACAACAACAACAAC 57.275 29.630 0.00 0.00 0.00 3.32
3041 3127 7.151308 TGCAACCATGGTAAATAAAGTTTCAG 58.849 34.615 20.12 0.00 0.00 3.02
3067 3153 6.975772 CGTCTTTAGTTTGTTCATTCCCAAAA 59.024 34.615 0.00 0.00 32.77 2.44
3075 3161 9.837525 CTAGTAGTACGTCTTTAGTTTGTTCAT 57.162 33.333 0.00 0.00 0.00 2.57
3177 3263 9.995003 AGATATCTGATAGTTAGCAAGGAAAAG 57.005 33.333 3.89 0.00 0.00 2.27
3342 3428 7.738146 CTTACAAAAGATTTCCAGAACTTGGGG 60.738 40.741 0.00 0.00 40.19 4.96
3354 3440 4.679654 CGGCACAACCTTACAAAAGATTTC 59.320 41.667 0.00 0.00 34.37 2.17
3377 3463 6.018425 CACTGCTAACAACATATGATCTCACC 60.018 42.308 10.38 0.00 0.00 4.02
3467 3553 2.796032 GCGTCTATTACCGGTACACCAC 60.796 54.545 15.53 8.25 35.14 4.16
3524 3610 9.927668 TTGCAGCTAGCTTTAATAATTTTCTTT 57.072 25.926 16.46 0.00 45.94 2.52
3566 3652 3.398954 TTCGCAACAACTCACAACTTC 57.601 42.857 0.00 0.00 0.00 3.01
3636 3723 5.583457 ACCGCACCAAAATATTAGAGTACAC 59.417 40.000 0.00 0.00 0.00 2.90
3805 3894 8.375493 TGTCAGAGGTAAACCAACTAGATAAT 57.625 34.615 0.00 0.00 38.89 1.28
3962 4051 6.599244 TGACTCTTTGCCCAATATCAGTTTAG 59.401 38.462 0.00 0.00 0.00 1.85
4144 4233 5.536161 CCCTTCTCCAATCAGAACTTGAAAA 59.464 40.000 0.00 0.00 39.77 2.29
4163 4252 1.947456 GGTTGTGAACAGTGTCCCTTC 59.053 52.381 0.00 0.00 0.00 3.46
4304 4393 0.668706 AGTGACTGCTAGCAACAGCG 60.669 55.000 19.86 9.15 44.88 5.18
4361 4450 0.037512 CACCACAGACTGCTCTCTGG 60.038 60.000 13.68 4.93 41.89 3.86
4626 4715 2.157738 GGCACAATGTTCTTGCTCTCT 58.842 47.619 0.00 0.00 36.46 3.10
4637 4729 1.271325 TGTCTGGATTCGGCACAATGT 60.271 47.619 0.00 0.00 0.00 2.71
4693 4785 1.578206 GACCGCTGCTCAAAAGGGTC 61.578 60.000 5.15 5.15 37.40 4.46
4739 4831 8.277197 CCACCATTCCATCCATACAAGATATAT 58.723 37.037 0.00 0.00 0.00 0.86
5056 5148 3.290948 AGCTTCCAAACTACCACAACA 57.709 42.857 0.00 0.00 0.00 3.33
5059 5151 4.634012 ACATAGCTTCCAAACTACCACA 57.366 40.909 0.00 0.00 0.00 4.17
5164 5256 1.816074 TCCGATGTACCAAACAAGCC 58.184 50.000 0.00 0.00 42.70 4.35
5293 5388 6.147328 GGGTCAGTCTACACAGAAACAAATAC 59.853 42.308 0.00 0.00 30.85 1.89
5295 5390 5.063880 GGGTCAGTCTACACAGAAACAAAT 58.936 41.667 0.00 0.00 30.85 2.32
5296 5391 4.163458 AGGGTCAGTCTACACAGAAACAAA 59.837 41.667 0.00 0.00 30.85 2.83
5297 5392 3.709653 AGGGTCAGTCTACACAGAAACAA 59.290 43.478 0.00 0.00 30.85 2.83
5406 5501 5.979517 CACTTTTCACCTTGACTGGAAAATC 59.020 40.000 0.00 0.00 38.23 2.17
5415 5510 1.268539 CGCCACACTTTTCACCTTGAC 60.269 52.381 0.00 0.00 0.00 3.18
5458 5554 1.434188 TCCATCACCCAACAGTCAGT 58.566 50.000 0.00 0.00 0.00 3.41
5468 5564 3.134127 GCAGGCGTTCCATCACCC 61.134 66.667 0.00 0.00 33.74 4.61
5488 5584 5.303078 ACCTGCGATCTATCTGTTCATAACT 59.697 40.000 0.00 0.00 0.00 2.24
5569 5665 2.451490 TCAGGAAGTGACCTCTGCTAG 58.549 52.381 0.00 0.00 38.32 3.42
5585 5681 1.747355 GTTGTTGAGGATGGCATCAGG 59.253 52.381 27.39 0.00 36.06 3.86
5607 5703 1.002888 CAGCAATGTCTCTGGTCCAGT 59.997 52.381 18.65 0.00 32.61 4.00
5681 5777 1.129058 GGGTAGATGGATCGGGTGTT 58.871 55.000 0.00 0.00 0.00 3.32
5689 5785 0.979665 CGATGCCAGGGTAGATGGAT 59.020 55.000 0.00 0.00 40.51 3.41
5783 5879 5.449999 CCCAAAGTGTTCACTCAAAAGTACC 60.450 44.000 5.91 0.00 33.25 3.34
5796 5892 1.165270 CCATCGGTCCCAAAGTGTTC 58.835 55.000 0.00 0.00 0.00 3.18
5810 5906 1.794222 GTTTCAACGGAGCCCATCG 59.206 57.895 0.00 0.00 0.00 3.84
5831 5927 2.262423 ACCAAGACAAGCAAGACCTC 57.738 50.000 0.00 0.00 0.00 3.85
5836 5932 1.536709 GCACCAACCAAGACAAGCAAG 60.537 52.381 0.00 0.00 0.00 4.01
5837 5933 0.459489 GCACCAACCAAGACAAGCAA 59.541 50.000 0.00 0.00 0.00 3.91
5838 5934 0.682532 TGCACCAACCAAGACAAGCA 60.683 50.000 0.00 0.00 0.00 3.91
5839 5935 0.031178 CTGCACCAACCAAGACAAGC 59.969 55.000 0.00 0.00 0.00 4.01
5968 6068 0.900421 TCATGCCAGACCTGTCTCAG 59.100 55.000 0.00 0.00 37.98 3.35
5970 6070 1.209019 ACATCATGCCAGACCTGTCTC 59.791 52.381 0.00 0.00 37.98 3.36
5988 6088 1.816863 GCGACAAGGGTGAGAGGACA 61.817 60.000 0.00 0.00 0.00 4.02
6089 6189 1.337167 TGAGTGACCGTGCATCTCTTG 60.337 52.381 0.00 0.00 0.00 3.02
6090 6190 0.969149 TGAGTGACCGTGCATCTCTT 59.031 50.000 0.00 0.00 0.00 2.85
6095 6195 1.442769 GATGTTGAGTGACCGTGCAT 58.557 50.000 0.00 0.00 0.00 3.96
6102 6202 4.867047 CACATAGTCAGGATGTTGAGTGAC 59.133 45.833 0.00 0.00 39.74 3.67
6179 6282 0.592500 TGATCGATTCGACTGCTCGC 60.593 55.000 11.56 0.00 39.18 5.03
6180 6283 1.712877 CATGATCGATTCGACTGCTCG 59.287 52.381 11.56 0.00 39.18 5.03
6203 6306 2.169789 CATCCACTGCTTCGCCTCG 61.170 63.158 0.00 0.00 0.00 4.63
6220 6323 4.399395 CCTTCGCTCCAGCCAGCA 62.399 66.667 1.26 0.00 39.62 4.41
6241 6344 2.159014 GCATGTAGTGATAACCGGTGGA 60.159 50.000 8.52 0.00 0.00 4.02
6242 6345 2.210116 GCATGTAGTGATAACCGGTGG 58.790 52.381 8.52 0.00 0.00 4.61
6243 6346 2.607635 GTGCATGTAGTGATAACCGGTG 59.392 50.000 8.52 0.00 0.00 4.94
6244 6347 2.737359 CGTGCATGTAGTGATAACCGGT 60.737 50.000 0.00 0.00 0.00 5.28
6245 6348 1.858458 CGTGCATGTAGTGATAACCGG 59.142 52.381 0.00 0.00 0.00 5.28
6246 6349 1.858458 CCGTGCATGTAGTGATAACCG 59.142 52.381 4.96 0.00 0.00 4.44
6247 6350 2.210116 CCCGTGCATGTAGTGATAACC 58.790 52.381 4.96 0.00 0.00 2.85
6248 6351 1.597663 GCCCGTGCATGTAGTGATAAC 59.402 52.381 4.96 0.00 37.47 1.89
6250 6353 0.105964 GGCCCGTGCATGTAGTGATA 59.894 55.000 4.96 0.00 40.13 2.15
6251 6354 1.153168 GGCCCGTGCATGTAGTGAT 60.153 57.895 4.96 0.00 40.13 3.06
6253 6356 2.824041 GGGCCCGTGCATGTAGTG 60.824 66.667 5.69 0.00 40.13 2.74
6254 6357 4.109675 GGGGCCCGTGCATGTAGT 62.110 66.667 17.79 0.00 40.13 2.73
6255 6358 3.420206 ATGGGGCCCGTGCATGTAG 62.420 63.158 18.81 0.00 40.13 2.74
6258 6361 4.818863 TCATGGGGCCCGTGCATG 62.819 66.667 35.56 25.73 40.13 4.06
6259 6362 4.511246 CTCATGGGGCCCGTGCAT 62.511 66.667 35.56 13.72 40.13 3.96
6261 6364 4.864334 CTCTCATGGGGCCCGTGC 62.864 72.222 35.56 5.12 40.13 5.34
6262 6365 3.402681 ACTCTCATGGGGCCCGTG 61.403 66.667 34.83 34.83 41.56 4.94
6263 6366 3.402681 CACTCTCATGGGGCCCGT 61.403 66.667 19.83 16.52 0.00 5.28
6264 6367 4.864334 GCACTCTCATGGGGCCCG 62.864 72.222 19.83 4.26 0.00 6.13
6265 6368 2.049627 CTAGCACTCTCATGGGGCCC 62.050 65.000 18.17 18.17 0.00 5.80
6266 6369 1.449353 CTAGCACTCTCATGGGGCC 59.551 63.158 0.00 0.00 0.00 5.80
6267 6370 1.227793 GCTAGCACTCTCATGGGGC 60.228 63.158 10.63 0.00 0.00 5.80
6268 6371 0.392336 GAGCTAGCACTCTCATGGGG 59.608 60.000 18.83 0.00 33.69 4.96
6269 6372 0.392336 GGAGCTAGCACTCTCATGGG 59.608 60.000 18.83 0.00 36.87 4.00
6270 6373 1.340889 GAGGAGCTAGCACTCTCATGG 59.659 57.143 24.15 0.00 36.87 3.66
6271 6374 2.309613 AGAGGAGCTAGCACTCTCATG 58.690 52.381 26.88 0.00 36.96 3.07
6272 6375 2.694628 CAAGAGGAGCTAGCACTCTCAT 59.305 50.000 30.23 19.20 40.49 2.90
6273 6376 2.098614 CAAGAGGAGCTAGCACTCTCA 58.901 52.381 30.23 0.00 40.49 3.27
6274 6377 2.099405 ACAAGAGGAGCTAGCACTCTC 58.901 52.381 30.23 24.34 40.49 3.20
6275 6378 2.230130 ACAAGAGGAGCTAGCACTCT 57.770 50.000 26.88 26.88 43.03 3.24
6276 6379 4.825085 ACTATACAAGAGGAGCTAGCACTC 59.175 45.833 24.06 24.06 35.86 3.51
6277 6380 4.798882 ACTATACAAGAGGAGCTAGCACT 58.201 43.478 18.83 14.64 0.00 4.40
6278 6381 5.300792 AGAACTATACAAGAGGAGCTAGCAC 59.699 44.000 18.83 11.05 0.00 4.40
6279 6382 5.450453 AGAACTATACAAGAGGAGCTAGCA 58.550 41.667 18.83 0.00 0.00 3.49
6280 6383 6.212955 CAAGAACTATACAAGAGGAGCTAGC 58.787 44.000 6.62 6.62 0.00 3.42
6281 6384 6.322712 ACCAAGAACTATACAAGAGGAGCTAG 59.677 42.308 0.00 0.00 0.00 3.42
6282 6385 6.195700 ACCAAGAACTATACAAGAGGAGCTA 58.804 40.000 0.00 0.00 0.00 3.32
6283 6386 5.026790 ACCAAGAACTATACAAGAGGAGCT 58.973 41.667 0.00 0.00 0.00 4.09
6284 6387 5.346181 ACCAAGAACTATACAAGAGGAGC 57.654 43.478 0.00 0.00 0.00 4.70
6285 6388 7.162082 ACAAACCAAGAACTATACAAGAGGAG 58.838 38.462 0.00 0.00 0.00 3.69
6286 6389 7.016268 AGACAAACCAAGAACTATACAAGAGGA 59.984 37.037 0.00 0.00 0.00 3.71
6287 6390 7.162082 AGACAAACCAAGAACTATACAAGAGG 58.838 38.462 0.00 0.00 0.00 3.69
6288 6391 8.608844 AAGACAAACCAAGAACTATACAAGAG 57.391 34.615 0.00 0.00 0.00 2.85
6289 6392 8.836413 CAAAGACAAACCAAGAACTATACAAGA 58.164 33.333 0.00 0.00 0.00 3.02
6290 6393 8.836413 TCAAAGACAAACCAAGAACTATACAAG 58.164 33.333 0.00 0.00 0.00 3.16
6291 6394 8.740123 TCAAAGACAAACCAAGAACTATACAA 57.260 30.769 0.00 0.00 0.00 2.41
6292 6395 8.918202 ATCAAAGACAAACCAAGAACTATACA 57.082 30.769 0.00 0.00 0.00 2.29
6295 6398 9.136323 AGAAATCAAAGACAAACCAAGAACTAT 57.864 29.630 0.00 0.00 0.00 2.12
6296 6399 8.519799 AGAAATCAAAGACAAACCAAGAACTA 57.480 30.769 0.00 0.00 0.00 2.24
6297 6400 7.410120 AGAAATCAAAGACAAACCAAGAACT 57.590 32.000 0.00 0.00 0.00 3.01
6298 6401 7.044052 CGAAGAAATCAAAGACAAACCAAGAAC 60.044 37.037 0.00 0.00 0.00 3.01
6304 6407 7.041984 AGTCTACGAAGAAATCAAAGACAAACC 60.042 37.037 0.00 0.00 39.90 3.27
6316 6419 6.039605 GGAAGCCTACTAGTCTACGAAGAAAT 59.960 42.308 0.00 0.00 32.16 2.17
6320 6423 4.453751 AGGAAGCCTACTAGTCTACGAAG 58.546 47.826 0.00 0.00 28.47 3.79
6321 6424 4.500499 AGGAAGCCTACTAGTCTACGAA 57.500 45.455 0.00 0.00 28.47 3.85
6322 6425 4.080695 TCAAGGAAGCCTACTAGTCTACGA 60.081 45.833 0.00 0.00 31.13 3.43
6323 6426 4.197750 TCAAGGAAGCCTACTAGTCTACG 58.802 47.826 0.00 0.00 31.13 3.51
6324 6427 5.195185 ACTCAAGGAAGCCTACTAGTCTAC 58.805 45.833 0.00 0.00 31.13 2.59
6325 6428 5.453866 ACTCAAGGAAGCCTACTAGTCTA 57.546 43.478 0.00 0.00 31.13 2.59
6326 6429 4.325084 ACTCAAGGAAGCCTACTAGTCT 57.675 45.455 0.00 0.00 31.13 3.24
6327 6430 5.408880 AAACTCAAGGAAGCCTACTAGTC 57.591 43.478 0.00 0.00 31.13 2.59
6328 6431 5.827326 AAAACTCAAGGAAGCCTACTAGT 57.173 39.130 0.00 0.00 31.13 2.57
6329 6432 7.159372 TGTTAAAACTCAAGGAAGCCTACTAG 58.841 38.462 0.00 0.00 31.13 2.57
6330 6433 7.069877 TGTTAAAACTCAAGGAAGCCTACTA 57.930 36.000 0.00 0.00 31.13 1.82
6331 6434 5.937111 TGTTAAAACTCAAGGAAGCCTACT 58.063 37.500 0.00 0.00 31.13 2.57
6332 6435 5.763698 ACTGTTAAAACTCAAGGAAGCCTAC 59.236 40.000 0.00 0.00 31.13 3.18
6333 6436 5.937111 ACTGTTAAAACTCAAGGAAGCCTA 58.063 37.500 0.00 0.00 31.13 3.93
6334 6437 4.793201 ACTGTTAAAACTCAAGGAAGCCT 58.207 39.130 0.00 0.00 33.87 4.58
6335 6438 5.515797 AACTGTTAAAACTCAAGGAAGCC 57.484 39.130 0.00 0.00 0.00 4.35
6336 6439 7.827819 AAAAACTGTTAAAACTCAAGGAAGC 57.172 32.000 0.00 0.00 0.00 3.86
6386 6499 3.548770 TGAAGCACATCTGATTGGATCC 58.451 45.455 4.20 4.20 0.00 3.36
6484 6598 4.487714 TTTCACATCATCACCCTAGTCC 57.512 45.455 0.00 0.00 0.00 3.85
6586 6705 8.087750 AGACAACACTTTTCAATCAACAAAGAA 58.912 29.630 0.00 0.00 32.73 2.52
6637 6757 4.119442 AGCTTTCATCAATCAACATGCC 57.881 40.909 0.00 0.00 0.00 4.40
6652 6842 6.317642 ACAAAACCAAAATACCCAAAGCTTTC 59.682 34.615 9.23 0.00 0.00 2.62
6681 6871 9.338622 ACCATAATATAGTACAACTGCTTTTCC 57.661 33.333 0.00 0.00 0.00 3.13
6684 6874 7.228706 GCCACCATAATATAGTACAACTGCTTT 59.771 37.037 0.00 0.00 0.00 3.51
6687 6877 6.231211 AGCCACCATAATATAGTACAACTGC 58.769 40.000 0.00 0.00 0.00 4.40
6688 6878 9.772973 TTTAGCCACCATAATATAGTACAACTG 57.227 33.333 0.00 0.00 0.00 3.16
6697 6887 6.938030 CGGTTTCCTTTAGCCACCATAATATA 59.062 38.462 0.00 0.00 0.00 0.86
6742 6932 6.814506 AATTGATCTTGTCACTTTGGAGAG 57.185 37.500 0.00 0.00 36.32 3.20
6743 6933 6.207417 GGAAATTGATCTTGTCACTTTGGAGA 59.793 38.462 0.00 0.00 39.11 3.71
6769 6959 2.159028 TGTTTAGCGGCAAAAGGCTTTT 60.159 40.909 19.14 19.14 44.01 2.27
6770 6960 1.410882 TGTTTAGCGGCAAAAGGCTTT 59.589 42.857 6.68 6.68 44.01 3.51
6786 6976 2.413239 CGAAAGCTCGCATCACATGTTT 60.413 45.455 0.00 0.00 38.45 2.83
6829 7019 4.929819 TGTGAGAAAGTACTGTGCAGTA 57.070 40.909 7.87 7.87 42.54 2.74
6830 7020 3.819564 TGTGAGAAAGTACTGTGCAGT 57.180 42.857 9.90 9.90 45.02 4.40
6831 7021 5.696270 TGTAATGTGAGAAAGTACTGTGCAG 59.304 40.000 0.00 0.00 0.00 4.41
6847 7037 7.201644 GGATGAGATGTACCTTTGTGTAATGTG 60.202 40.741 0.00 0.00 0.00 3.21
6851 7041 6.440647 AGAGGATGAGATGTACCTTTGTGTAA 59.559 38.462 0.00 0.00 32.53 2.41
6854 7044 5.114780 CAGAGGATGAGATGTACCTTTGTG 58.885 45.833 0.00 0.00 32.40 3.33
6888 7083 6.428385 AGATATTTCCAAGAAAAGCGTGAG 57.572 37.500 0.00 0.00 0.00 3.51
6906 7105 6.803366 AGTAAGTTTTGTCCGGGTAGATAT 57.197 37.500 0.00 0.00 0.00 1.63
6918 7117 7.506768 GGGCAACAACACAAAGTAAGTTTTGT 61.507 38.462 0.00 0.00 44.89 2.83
6990 7199 0.657368 CGCTCTCGTGTTTGTTTGGC 60.657 55.000 0.00 0.00 0.00 4.52
7014 7223 1.365633 GCTCTCCTATCACCGCCAG 59.634 63.158 0.00 0.00 0.00 4.85
7019 7228 2.194212 TCGCCGCTCTCCTATCACC 61.194 63.158 0.00 0.00 0.00 4.02
7020 7229 1.008309 GTCGCCGCTCTCCTATCAC 60.008 63.158 0.00 0.00 0.00 3.06
7021 7230 1.448119 CTGTCGCCGCTCTCCTATCA 61.448 60.000 0.00 0.00 0.00 2.15
7022 7231 1.284408 CTGTCGCCGCTCTCCTATC 59.716 63.158 0.00 0.00 0.00 2.08
7028 7322 4.862092 CATCGCTGTCGCCGCTCT 62.862 66.667 0.00 0.00 35.26 4.09
7050 7344 2.167861 GCCATCAGAACGAGCCGTC 61.168 63.158 0.69 0.00 39.99 4.79
7061 7355 1.226974 CGACCACTACCGCCATCAG 60.227 63.158 0.00 0.00 0.00 2.90
7063 7357 0.804933 GAACGACCACTACCGCCATC 60.805 60.000 0.00 0.00 0.00 3.51
7064 7358 1.217244 GAACGACCACTACCGCCAT 59.783 57.895 0.00 0.00 0.00 4.40
7065 7359 2.652530 GAACGACCACTACCGCCA 59.347 61.111 0.00 0.00 0.00 5.69
7070 7364 0.389426 ACCATGCGAACGACCACTAC 60.389 55.000 0.00 0.00 0.00 2.73
7077 7371 0.601057 TTCTGAGACCATGCGAACGA 59.399 50.000 0.00 0.00 0.00 3.85
7085 7379 9.471702 AAAATTACATCAAGATTCTGAGACCAT 57.528 29.630 0.00 0.00 0.00 3.55
7124 7418 3.665745 TCACCGGAAGTACAAAGTACC 57.334 47.619 9.46 0.00 0.00 3.34
7127 7425 3.832615 AGTTCACCGGAAGTACAAAGT 57.167 42.857 9.46 0.00 34.92 2.66
7138 7436 8.792830 ATCCATATATTATCAAAGTTCACCGG 57.207 34.615 0.00 0.00 0.00 5.28
7139 7437 9.435688 TGATCCATATATTATCAAAGTTCACCG 57.564 33.333 5.42 0.00 0.00 4.94
7170 7468 5.597813 ACTAGCTCATGTTTTTCTTCGTG 57.402 39.130 0.00 0.00 0.00 4.35
7171 7469 7.441458 AGTTTACTAGCTCATGTTTTTCTTCGT 59.559 33.333 0.00 0.00 0.00 3.85
7189 7487 4.919168 CACGTTTCGGATGACAGTTTACTA 59.081 41.667 0.00 0.00 0.00 1.82
7191 7489 3.120786 CCACGTTTCGGATGACAGTTTAC 60.121 47.826 0.00 0.00 0.00 2.01
7193 7491 1.871039 CCACGTTTCGGATGACAGTTT 59.129 47.619 0.00 0.00 0.00 2.66
7194 7492 1.202604 ACCACGTTTCGGATGACAGTT 60.203 47.619 0.00 0.00 0.00 3.16
7196 7494 2.259618 CTACCACGTTTCGGATGACAG 58.740 52.381 0.00 0.00 0.00 3.51
7200 7614 0.457166 TCGCTACCACGTTTCGGATG 60.457 55.000 0.00 0.00 0.00 3.51
7204 7629 1.788308 TCTTTTCGCTACCACGTTTCG 59.212 47.619 0.00 0.00 0.00 3.46
7217 7642 5.261209 AGTGATGAGGAGAGATCTTTTCG 57.739 43.478 0.00 0.00 0.00 3.46
7222 7647 3.118075 TGTCGAGTGATGAGGAGAGATCT 60.118 47.826 0.00 0.00 0.00 2.75
7225 7650 2.789409 TGTCGAGTGATGAGGAGAGA 57.211 50.000 0.00 0.00 0.00 3.10
7315 7823 5.048154 ACGTGGTTTTCTCCTTCTACTACTC 60.048 44.000 0.00 0.00 0.00 2.59
7316 7824 4.831710 ACGTGGTTTTCTCCTTCTACTACT 59.168 41.667 0.00 0.00 0.00 2.57
7317 7825 5.131594 ACGTGGTTTTCTCCTTCTACTAC 57.868 43.478 0.00 0.00 0.00 2.73
7318 7826 5.769662 TGTACGTGGTTTTCTCCTTCTACTA 59.230 40.000 0.00 0.00 0.00 1.82
7327 7835 2.610374 TGCAGTTGTACGTGGTTTTCTC 59.390 45.455 0.00 0.00 0.00 2.87
7398 7910 2.344917 CTCAAAATGAGGCGAGGAGGC 61.345 57.143 0.00 0.00 40.71 4.70
7399 7911 1.661341 CTCAAAATGAGGCGAGGAGG 58.339 55.000 0.00 0.00 40.71 4.30
7440 7952 6.437928 CATGGATATTGTATTGTTGTTCCCG 58.562 40.000 0.00 0.00 0.00 5.14
7441 7953 6.738453 GCCATGGATATTGTATTGTTGTTCCC 60.738 42.308 18.40 0.00 0.00 3.97
7442 7954 6.215845 GCCATGGATATTGTATTGTTGTTCC 58.784 40.000 18.40 0.00 0.00 3.62
7443 7955 6.183360 TGGCCATGGATATTGTATTGTTGTTC 60.183 38.462 18.40 0.00 0.00 3.18
7444 7956 5.660417 TGGCCATGGATATTGTATTGTTGTT 59.340 36.000 18.40 0.00 0.00 2.83
7523 8057 1.060698 GGTCTCATTTTCAGCGTACGC 59.939 52.381 32.17 32.17 42.33 4.42
7524 8058 2.345641 CAGGTCTCATTTTCAGCGTACG 59.654 50.000 11.84 11.84 0.00 3.67
7541 8075 3.311990 TCATAGCATCCACTCATCAGGT 58.688 45.455 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.