Multiple sequence alignment - TraesCS6D01G205900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G205900 chr6D 100.000 4566 0 0 1 4566 291783241 291787806 0.000000e+00 8432
1 TraesCS6D01G205900 chr6D 91.382 2785 210 17 932 3711 291795282 291798041 0.000000e+00 3786
2 TraesCS6D01G205900 chr6D 82.647 1020 138 27 34 1026 291794082 291795089 0.000000e+00 867
3 TraesCS6D01G205900 chr6B 86.756 2990 329 40 912 3869 537302780 537305734 0.000000e+00 3265
4 TraesCS6D01G205900 chr6B 86.484 2989 339 38 912 3869 453263590 453266544 0.000000e+00 3221
5 TraesCS6D01G205900 chr6B 90.940 2373 198 9 1120 3478 453156730 453159099 0.000000e+00 3175
6 TraesCS6D01G205900 chr6B 80.775 1420 227 29 2241 3634 11609711 11608312 0.000000e+00 1068
7 TraesCS6D01G205900 chr6B 75.561 2140 481 33 912 3024 453277819 453279943 0.000000e+00 1016
8 TraesCS6D01G205900 chr6B 79.678 994 143 33 35 985 453276771 453277748 0.000000e+00 662
9 TraesCS6D01G205900 chr6B 79.412 986 140 32 35 973 537315902 537316871 4.980000e-179 638
10 TraesCS6D01G205900 chr6B 86.381 536 59 6 3478 4010 453160973 453161497 1.420000e-159 573
11 TraesCS6D01G205900 chr6B 75.142 1235 287 18 1800 3024 537323067 537324291 3.080000e-156 562
12 TraesCS6D01G205900 chr6B 90.210 429 36 4 300 722 453117736 453118164 5.160000e-154 555
13 TraesCS6D01G205900 chr6B 93.122 189 9 3 33 218 453115306 453115493 1.620000e-69 274
14 TraesCS6D01G205900 chr6B 83.936 249 22 10 33 269 453248132 453248374 5.950000e-54 222
15 TraesCS6D01G205900 chr6B 83.936 249 22 10 33 269 537297762 537298004 5.950000e-54 222
16 TraesCS6D01G205900 chr6B 82.488 217 28 10 911 1122 453120253 453120464 1.010000e-41 182
17 TraesCS6D01G205900 chr6B 85.227 176 26 0 406 581 537300337 537300512 1.010000e-41 182
18 TraesCS6D01G205900 chr6B 94.505 91 5 0 213 303 453117293 453117383 1.710000e-29 141
19 TraesCS6D01G205900 chr3B 83.532 2016 287 22 1360 3336 22209117 22211126 0.000000e+00 1842
20 TraesCS6D01G205900 chr3B 86.588 1014 109 16 2260 3249 22438131 22439141 0.000000e+00 1094
21 TraesCS6D01G205900 chr3B 84.216 963 124 18 2545 3483 22383874 22384832 0.000000e+00 911
22 TraesCS6D01G205900 chr3B 80.420 761 127 14 273 1026 22370140 22370885 1.110000e-155 560
23 TraesCS6D01G205900 chr3B 80.263 760 131 13 297 1042 22207701 22208455 5.160000e-154 555
24 TraesCS6D01G205900 chr3B 82.946 258 29 13 4008 4261 448985065 448984819 7.690000e-53 219
25 TraesCS6D01G205900 chr3B 83.333 150 20 3 3467 3616 22390308 22390452 2.870000e-27 134
26 TraesCS6D01G205900 chr6A 82.499 2137 334 33 911 3024 431223266 431221147 0.000000e+00 1838
27 TraesCS6D01G205900 chr6A 92.369 996 54 8 45 1026 431490762 431489775 0.000000e+00 1399
28 TraesCS6D01G205900 chr6A 88.822 993 105 6 899 1888 431489758 431488769 0.000000e+00 1214
29 TraesCS6D01G205900 chr6A 80.306 1046 134 44 34 1026 431224392 431223366 0.000000e+00 725
30 TraesCS6D01G205900 chr6A 80.176 454 54 23 3195 3633 431246644 431246212 1.600000e-79 307
31 TraesCS6D01G205900 chrUn 96.411 418 15 0 2234 2651 477001753 477002170 0.000000e+00 689
32 TraesCS6D01G205900 chrUn 83.936 249 22 10 33 269 478857084 478856842 5.950000e-54 222
33 TraesCS6D01G205900 chr4A 77.254 743 158 8 2075 2810 628712710 628713448 4.220000e-115 425
34 TraesCS6D01G205900 chr4A 76.082 439 96 5 475 905 740447281 740446844 2.140000e-53 220
35 TraesCS6D01G205900 chr7D 78.512 484 93 8 475 949 2899250 2898769 1.600000e-79 307
36 TraesCS6D01G205900 chr7D 90.576 191 18 0 4015 4205 555211684 555211494 2.110000e-63 254
37 TraesCS6D01G205900 chr2B 83.082 331 49 6 4015 4341 53438003 53437676 1.240000e-75 294
38 TraesCS6D01G205900 chr5A 92.893 197 13 1 4015 4210 688264403 688264599 7.480000e-73 285
39 TraesCS6D01G205900 chr5D 86.722 241 22 9 4015 4245 393870115 393869875 4.530000e-65 259
40 TraesCS6D01G205900 chr5D 90.625 192 17 1 4015 4205 275606489 275606680 2.110000e-63 254
41 TraesCS6D01G205900 chr3D 85.714 238 28 5 4015 4248 360857984 360858219 3.530000e-61 246
42 TraesCS6D01G205900 chr2D 85.185 243 29 6 4015 4256 635814721 635814485 4.560000e-60 243
43 TraesCS6D01G205900 chr7A 86.697 218 24 5 4015 4227 583099701 583099484 2.120000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G205900 chr6D 291783241 291787806 4565 False 8432.0 8432 100.000000 1 4566 1 chr6D.!!$F1 4565
1 TraesCS6D01G205900 chr6D 291794082 291798041 3959 False 2326.5 3786 87.014500 34 3711 2 chr6D.!!$F2 3677
2 TraesCS6D01G205900 chr6B 453263590 453266544 2954 False 3221.0 3221 86.484000 912 3869 1 chr6B.!!$F2 2957
3 TraesCS6D01G205900 chr6B 453156730 453161497 4767 False 1874.0 3175 88.660500 1120 4010 2 chr6B.!!$F6 2890
4 TraesCS6D01G205900 chr6B 537297762 537305734 7972 False 1223.0 3265 85.306333 33 3869 3 chr6B.!!$F8 3836
5 TraesCS6D01G205900 chr6B 11608312 11609711 1399 True 1068.0 1068 80.775000 2241 3634 1 chr6B.!!$R1 1393
6 TraesCS6D01G205900 chr6B 453276771 453279943 3172 False 839.0 1016 77.619500 35 3024 2 chr6B.!!$F7 2989
7 TraesCS6D01G205900 chr6B 537315902 537316871 969 False 638.0 638 79.412000 35 973 1 chr6B.!!$F3 938
8 TraesCS6D01G205900 chr6B 537323067 537324291 1224 False 562.0 562 75.142000 1800 3024 1 chr6B.!!$F4 1224
9 TraesCS6D01G205900 chr6B 453115306 453120464 5158 False 288.0 555 90.081250 33 1122 4 chr6B.!!$F5 1089
10 TraesCS6D01G205900 chr3B 22207701 22211126 3425 False 1198.5 1842 81.897500 297 3336 2 chr3B.!!$F5 3039
11 TraesCS6D01G205900 chr3B 22438131 22439141 1010 False 1094.0 1094 86.588000 2260 3249 1 chr3B.!!$F4 989
12 TraesCS6D01G205900 chr3B 22383874 22384832 958 False 911.0 911 84.216000 2545 3483 1 chr3B.!!$F2 938
13 TraesCS6D01G205900 chr3B 22370140 22370885 745 False 560.0 560 80.420000 273 1026 1 chr3B.!!$F1 753
14 TraesCS6D01G205900 chr6A 431488769 431490762 1993 True 1306.5 1399 90.595500 45 1888 2 chr6A.!!$R3 1843
15 TraesCS6D01G205900 chr6A 431221147 431224392 3245 True 1281.5 1838 81.402500 34 3024 2 chr6A.!!$R2 2990
16 TraesCS6D01G205900 chr4A 628712710 628713448 738 False 425.0 425 77.254000 2075 2810 1 chr4A.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 224 0.109039 GTTCTGCTCTCCGGACAGAC 60.109 60.000 19.77 12.65 40.03 3.51 F
1304 9611 1.147473 GGCAACATTTTTGAAGGGCG 58.853 50.000 0.00 0.00 0.00 6.13 F
1694 10139 3.282021 GCACAATAGAAGGATGGCTTGA 58.718 45.455 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 9966 2.383442 ACTGCGGTATAGATCCCAGT 57.617 50.000 0.0 0.0 34.30 4.00 R
3019 11483 1.554617 TGAATGTCCGATGAGGCTTGA 59.445 47.619 0.0 0.0 40.77 3.02 R
3662 14037 1.654105 GTGTACTCGTGGCTCATTTCG 59.346 52.381 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.598517 TTTTTGAGACAAGTTAGATGCATTTTT 57.401 25.926 0.00 0.00 0.00 1.94
171 185 1.587946 GCAAAACAAACCACGCAGAAG 59.412 47.619 0.00 0.00 0.00 2.85
190 218 2.097038 CGCTTGTTCTGCTCTCCGG 61.097 63.158 0.00 0.00 0.00 5.14
191 219 1.293498 GCTTGTTCTGCTCTCCGGA 59.707 57.895 2.93 2.93 0.00 5.14
196 224 0.109039 GTTCTGCTCTCCGGACAGAC 60.109 60.000 19.77 12.65 40.03 3.51
328 4162 1.737236 GCATCCACACGTATTGCTTGA 59.263 47.619 0.00 0.00 0.00 3.02
341 4176 2.052782 TGCTTGATCATGCTGCTCAT 57.947 45.000 27.81 0.00 35.31 2.90
382 4433 3.457234 TCCGCTAGTTAACATGCAGATG 58.543 45.455 18.36 0.00 35.49 2.90
403 4454 5.432885 TGCAATTCATAGCATCATGTCAG 57.567 39.130 0.00 0.00 35.51 3.51
432 4483 8.188139 AGTTTATGATTTACATTTTGTAGGCGG 58.812 33.333 0.00 0.00 40.07 6.13
509 4565 1.356624 GCGTTGCTGCTGTTCTGTT 59.643 52.632 0.00 0.00 0.00 3.16
517 4573 2.675348 GCTGCTGTTCTGTTATGGAGTC 59.325 50.000 0.00 0.00 0.00 3.36
861 8583 7.329226 ACACTTTCTCTGAACAACAACAATTTG 59.671 33.333 0.00 0.00 38.83 2.32
1023 9321 2.026262 GCTAGTGGGTCAAATTCCTCCA 60.026 50.000 0.00 0.00 0.00 3.86
1130 9428 5.432885 TTGCTAAGTTTACAAGTCTTGCC 57.567 39.130 12.66 0.00 0.00 4.52
1185 9489 4.441079 CCACATTCCATCTTGAATCTTGCC 60.441 45.833 0.00 0.00 32.71 4.52
1226 9530 3.969976 AGCTTGGAGGTGAATATGCTAGA 59.030 43.478 0.00 0.00 0.00 2.43
1277 9584 3.527507 TCGGGGTCTCATAGAGCTTAT 57.472 47.619 6.13 0.00 42.10 1.73
1304 9611 1.147473 GGCAACATTTTTGAAGGGCG 58.853 50.000 0.00 0.00 0.00 6.13
1380 9687 6.698766 CAGCTAATAATTTCACTGGGCAAATC 59.301 38.462 0.00 0.00 0.00 2.17
1449 9756 4.243007 ACATAACCAGCTTGAAACAAGC 57.757 40.909 23.31 23.31 43.31 4.01
1694 10139 3.282021 GCACAATAGAAGGATGGCTTGA 58.718 45.455 0.00 0.00 0.00 3.02
1775 10221 5.544176 TCCCACCCTCTATTAGCAATCTTAG 59.456 44.000 0.00 0.00 0.00 2.18
2253 10708 8.839310 ATAATCATCTTGAAGGAGAATTACCG 57.161 34.615 0.00 0.00 0.00 4.02
2587 11047 3.637229 CCTTGTCGGAAGAGGAAGCTATA 59.363 47.826 2.55 0.00 43.49 1.31
2800 11261 8.514594 TCAAAGCTCTAGTTTACAAATTCATGG 58.485 33.333 0.00 0.00 0.00 3.66
2927 11389 4.082300 TGCACTGGCTTATTTACACAATGG 60.082 41.667 0.00 0.00 41.91 3.16
3019 11483 2.286365 TTTGGGAGACTTCGGCATTT 57.714 45.000 0.00 0.00 0.00 2.32
3115 11583 6.040616 AGGTATAGTAATTCCAGTGACTTCCG 59.959 42.308 0.00 0.00 0.00 4.30
3553 13918 1.608590 GCAACCAAGCAAGAGCAAGTA 59.391 47.619 0.00 0.00 45.49 2.24
3727 14102 6.463897 GGGGTTACTAATGTATGCTGCTAAGA 60.464 42.308 0.00 0.00 0.00 2.10
3794 14171 5.013183 AGGTACTAAGACTTTGGTTCAGCAT 59.987 40.000 0.00 0.00 36.02 3.79
3795 14172 5.122396 GGTACTAAGACTTTGGTTCAGCATG 59.878 44.000 0.00 0.00 37.54 4.06
3796 14173 4.074970 ACTAAGACTTTGGTTCAGCATGG 58.925 43.478 0.00 0.00 36.16 3.66
3797 14174 2.664402 AGACTTTGGTTCAGCATGGT 57.336 45.000 0.00 0.00 36.16 3.55
3798 14175 2.949447 AGACTTTGGTTCAGCATGGTT 58.051 42.857 0.00 0.00 36.16 3.67
3799 14176 3.299503 AGACTTTGGTTCAGCATGGTTT 58.700 40.909 0.00 0.00 36.16 3.27
3800 14177 4.469657 AGACTTTGGTTCAGCATGGTTTA 58.530 39.130 0.00 0.00 36.16 2.01
3801 14178 5.079643 AGACTTTGGTTCAGCATGGTTTAT 58.920 37.500 0.00 0.00 36.16 1.40
3802 14179 6.245408 AGACTTTGGTTCAGCATGGTTTATA 58.755 36.000 0.00 0.00 36.16 0.98
3803 14180 6.891908 AGACTTTGGTTCAGCATGGTTTATAT 59.108 34.615 0.00 0.00 36.16 0.86
3804 14181 8.052748 AGACTTTGGTTCAGCATGGTTTATATA 58.947 33.333 0.00 0.00 36.16 0.86
3898 14276 4.760204 AGTTAATTAGCAAACGCTTGGTCT 59.240 37.500 6.51 0.00 42.24 3.85
3919 14297 4.479619 CTTGAATCCAAGCTGCAAACTAC 58.520 43.478 1.02 0.00 42.72 2.73
3924 14302 1.609208 CAAGCTGCAAACTACTGGGT 58.391 50.000 1.02 0.00 0.00 4.51
3928 14306 1.807142 GCTGCAAACTACTGGGTCTTC 59.193 52.381 0.00 0.00 0.00 2.87
3931 14309 2.703536 TGCAAACTACTGGGTCTTCTCA 59.296 45.455 0.00 0.00 0.00 3.27
3935 14313 4.608948 AACTACTGGGTCTTCTCACTTG 57.391 45.455 0.00 0.00 0.00 3.16
3947 14325 8.910944 GGGTCTTCTCACTTGTATACTATTGTA 58.089 37.037 4.17 0.00 0.00 2.41
3948 14326 9.733219 GGTCTTCTCACTTGTATACTATTGTAC 57.267 37.037 4.17 0.00 0.00 2.90
3949 14327 9.733219 GTCTTCTCACTTGTATACTATTGTACC 57.267 37.037 4.17 0.00 0.00 3.34
3976 14354 1.790755 TACTTGGCGTGTTACTGCAG 58.209 50.000 13.48 13.48 0.00 4.41
4013 14391 8.934507 AAATACTGTTGACTAATAGTGCTCTC 57.065 34.615 0.00 0.00 38.50 3.20
4014 14392 7.889873 ATACTGTTGACTAATAGTGCTCTCT 57.110 36.000 0.00 0.00 38.50 3.10
4015 14393 5.960113 ACTGTTGACTAATAGTGCTCTCTG 58.040 41.667 0.00 0.00 36.95 3.35
4016 14394 5.478679 ACTGTTGACTAATAGTGCTCTCTGT 59.521 40.000 0.00 0.00 36.95 3.41
4017 14395 6.015010 ACTGTTGACTAATAGTGCTCTCTGTT 60.015 38.462 0.00 0.00 36.95 3.16
4018 14396 7.176865 ACTGTTGACTAATAGTGCTCTCTGTTA 59.823 37.037 0.00 0.00 36.95 2.41
4019 14397 7.539436 TGTTGACTAATAGTGCTCTCTGTTAG 58.461 38.462 0.00 11.37 41.54 2.34
4020 14398 7.393515 TGTTGACTAATAGTGCTCTCTGTTAGA 59.606 37.037 16.72 0.00 39.67 2.10
4021 14399 8.410141 GTTGACTAATAGTGCTCTCTGTTAGAT 58.590 37.037 16.72 6.46 39.67 1.98
4022 14400 9.628500 TTGACTAATAGTGCTCTCTGTTAGATA 57.372 33.333 16.72 7.09 39.67 1.98
4023 14401 9.800572 TGACTAATAGTGCTCTCTGTTAGATAT 57.199 33.333 16.72 1.87 39.67 1.63
4025 14403 9.581289 ACTAATAGTGCTCTCTGTTAGATATGT 57.419 33.333 16.72 0.00 39.67 2.29
4031 14409 9.581289 AGTGCTCTCTGTTAGATATGTATAGTT 57.419 33.333 0.00 0.00 32.41 2.24
4032 14410 9.834628 GTGCTCTCTGTTAGATATGTATAGTTC 57.165 37.037 0.00 0.00 32.41 3.01
4033 14411 9.800572 TGCTCTCTGTTAGATATGTATAGTTCT 57.199 33.333 0.00 0.00 32.41 3.01
4046 14424 9.998106 ATATGTATAGTTCTTTGTGTACATCCC 57.002 33.333 0.00 0.00 35.24 3.85
4047 14425 6.646267 TGTATAGTTCTTTGTGTACATCCCC 58.354 40.000 0.00 0.00 0.00 4.81
4048 14426 3.053831 AGTTCTTTGTGTACATCCCCG 57.946 47.619 0.00 0.00 0.00 5.73
4049 14427 2.370849 AGTTCTTTGTGTACATCCCCGT 59.629 45.455 0.00 0.00 0.00 5.28
4050 14428 3.143728 GTTCTTTGTGTACATCCCCGTT 58.856 45.455 0.00 0.00 0.00 4.44
4051 14429 2.773487 TCTTTGTGTACATCCCCGTTG 58.227 47.619 0.00 0.00 0.00 4.10
4052 14430 2.105134 TCTTTGTGTACATCCCCGTTGT 59.895 45.455 0.00 0.00 0.00 3.32
4053 14431 3.324268 TCTTTGTGTACATCCCCGTTGTA 59.676 43.478 0.00 0.00 0.00 2.41
4054 14432 3.985019 TTGTGTACATCCCCGTTGTAT 57.015 42.857 0.00 0.00 32.56 2.29
4055 14433 5.187381 TCTTTGTGTACATCCCCGTTGTATA 59.813 40.000 0.00 0.00 32.56 1.47
4056 14434 5.417754 TTGTGTACATCCCCGTTGTATAA 57.582 39.130 0.00 0.00 32.56 0.98
4057 14435 5.013568 TGTGTACATCCCCGTTGTATAAG 57.986 43.478 0.00 0.00 32.56 1.73
4058 14436 4.141892 TGTGTACATCCCCGTTGTATAAGG 60.142 45.833 0.00 0.00 32.56 2.69
4059 14437 3.388676 TGTACATCCCCGTTGTATAAGGG 59.611 47.826 4.10 4.10 44.67 3.95
4065 14443 2.430248 CCGTTGTATAAGGGGCCTTT 57.570 50.000 6.05 6.05 38.01 3.11
4066 14444 2.294979 CCGTTGTATAAGGGGCCTTTC 58.705 52.381 3.28 0.00 38.01 2.62
4067 14445 2.092592 CCGTTGTATAAGGGGCCTTTCT 60.093 50.000 3.28 0.00 38.01 2.52
4068 14446 2.943033 CGTTGTATAAGGGGCCTTTCTG 59.057 50.000 3.28 0.00 37.47 3.02
4069 14447 2.688446 GTTGTATAAGGGGCCTTTCTGC 59.312 50.000 3.28 0.00 37.47 4.26
4070 14448 1.919654 TGTATAAGGGGCCTTTCTGCA 59.080 47.619 3.28 1.83 37.47 4.41
4071 14449 2.298610 GTATAAGGGGCCTTTCTGCAC 58.701 52.381 3.28 0.00 37.47 4.57
4072 14450 1.002857 ATAAGGGGCCTTTCTGCACT 58.997 50.000 3.28 0.00 37.47 4.40
4073 14451 0.777446 TAAGGGGCCTTTCTGCACTT 59.223 50.000 3.28 0.00 37.47 3.16
4074 14452 0.105504 AAGGGGCCTTTCTGCACTTT 60.106 50.000 0.84 0.00 34.20 2.66
4075 14453 0.777446 AGGGGCCTTTCTGCACTTTA 59.223 50.000 0.84 0.00 34.20 1.85
4076 14454 0.888619 GGGGCCTTTCTGCACTTTAC 59.111 55.000 0.84 0.00 34.20 2.01
4077 14455 0.888619 GGGCCTTTCTGCACTTTACC 59.111 55.000 0.84 0.00 0.00 2.85
4078 14456 1.616159 GGCCTTTCTGCACTTTACCA 58.384 50.000 0.00 0.00 0.00 3.25
4079 14457 1.269723 GGCCTTTCTGCACTTTACCAC 59.730 52.381 0.00 0.00 0.00 4.16
4080 14458 1.953686 GCCTTTCTGCACTTTACCACA 59.046 47.619 0.00 0.00 0.00 4.17
4081 14459 2.558359 GCCTTTCTGCACTTTACCACAT 59.442 45.455 0.00 0.00 0.00 3.21
4082 14460 3.366374 GCCTTTCTGCACTTTACCACATC 60.366 47.826 0.00 0.00 0.00 3.06
4083 14461 4.074970 CCTTTCTGCACTTTACCACATCT 58.925 43.478 0.00 0.00 0.00 2.90
4084 14462 4.083110 CCTTTCTGCACTTTACCACATCTG 60.083 45.833 0.00 0.00 0.00 2.90
4085 14463 3.769739 TCTGCACTTTACCACATCTGT 57.230 42.857 0.00 0.00 0.00 3.41
4086 14464 4.882842 TCTGCACTTTACCACATCTGTA 57.117 40.909 0.00 0.00 0.00 2.74
4087 14465 5.420725 TCTGCACTTTACCACATCTGTAT 57.579 39.130 0.00 0.00 0.00 2.29
4088 14466 6.538945 TCTGCACTTTACCACATCTGTATA 57.461 37.500 0.00 0.00 0.00 1.47
4089 14467 7.124573 TCTGCACTTTACCACATCTGTATAT 57.875 36.000 0.00 0.00 0.00 0.86
4090 14468 6.986231 TCTGCACTTTACCACATCTGTATATG 59.014 38.462 0.00 0.00 0.00 1.78
4091 14469 6.649155 TGCACTTTACCACATCTGTATATGT 58.351 36.000 0.00 0.00 40.75 2.29
4092 14470 7.787028 TGCACTTTACCACATCTGTATATGTA 58.213 34.615 0.00 0.00 38.01 2.29
4093 14471 7.709182 TGCACTTTACCACATCTGTATATGTAC 59.291 37.037 0.00 0.00 38.01 2.90
4094 14472 7.926555 GCACTTTACCACATCTGTATATGTACT 59.073 37.037 1.08 0.00 38.01 2.73
4095 14473 9.249457 CACTTTACCACATCTGTATATGTACTG 57.751 37.037 1.08 0.92 38.01 2.74
4096 14474 8.421784 ACTTTACCACATCTGTATATGTACTGG 58.578 37.037 6.66 5.30 38.01 4.00
4097 14475 7.907841 TTACCACATCTGTATATGTACTGGT 57.092 36.000 12.87 12.87 38.01 4.00
4098 14476 6.406692 ACCACATCTGTATATGTACTGGTC 57.593 41.667 5.10 0.00 38.01 4.02
4099 14477 6.136857 ACCACATCTGTATATGTACTGGTCT 58.863 40.000 5.10 0.00 38.01 3.85
4100 14478 6.611642 ACCACATCTGTATATGTACTGGTCTT 59.388 38.462 5.10 0.00 38.01 3.01
4101 14479 7.125811 ACCACATCTGTATATGTACTGGTCTTT 59.874 37.037 5.10 0.00 38.01 2.52
4102 14480 7.439356 CCACATCTGTATATGTACTGGTCTTTG 59.561 40.741 6.66 0.00 38.01 2.77
4103 14481 7.439356 CACATCTGTATATGTACTGGTCTTTGG 59.561 40.741 6.66 0.00 38.01 3.28
4104 14482 5.914033 TCTGTATATGTACTGGTCTTTGGC 58.086 41.667 6.66 0.00 32.44 4.52
4105 14483 5.031066 TGTATATGTACTGGTCTTTGGCC 57.969 43.478 0.00 0.00 0.00 5.36
4106 14484 3.577805 ATATGTACTGGTCTTTGGCCC 57.422 47.619 0.00 0.00 0.00 5.80
4107 14485 1.372501 ATGTACTGGTCTTTGGCCCT 58.627 50.000 0.00 0.00 0.00 5.19
4108 14486 0.690762 TGTACTGGTCTTTGGCCCTC 59.309 55.000 0.00 0.00 0.00 4.30
4109 14487 0.690762 GTACTGGTCTTTGGCCCTCA 59.309 55.000 0.00 0.00 0.00 3.86
4110 14488 0.984230 TACTGGTCTTTGGCCCTCAG 59.016 55.000 0.00 1.40 0.00 3.35
4111 14489 1.062488 ACTGGTCTTTGGCCCTCAGT 61.062 55.000 0.00 2.07 0.00 3.41
4112 14490 0.984230 CTGGTCTTTGGCCCTCAGTA 59.016 55.000 0.00 0.00 0.00 2.74
4113 14491 1.351017 CTGGTCTTTGGCCCTCAGTAA 59.649 52.381 0.00 0.00 0.00 2.24
4114 14492 1.777878 TGGTCTTTGGCCCTCAGTAAA 59.222 47.619 0.00 0.00 0.00 2.01
4115 14493 2.378547 TGGTCTTTGGCCCTCAGTAAAT 59.621 45.455 0.00 0.00 0.00 1.40
4116 14494 3.017442 GGTCTTTGGCCCTCAGTAAATC 58.983 50.000 0.00 0.00 0.00 2.17
4117 14495 3.308473 GGTCTTTGGCCCTCAGTAAATCT 60.308 47.826 0.00 0.00 0.00 2.40
4118 14496 4.080526 GGTCTTTGGCCCTCAGTAAATCTA 60.081 45.833 0.00 0.00 0.00 1.98
4119 14497 5.119694 GTCTTTGGCCCTCAGTAAATCTAG 58.880 45.833 0.00 0.00 0.00 2.43
4120 14498 4.783227 TCTTTGGCCCTCAGTAAATCTAGT 59.217 41.667 0.00 0.00 0.00 2.57
4121 14499 5.250774 TCTTTGGCCCTCAGTAAATCTAGTT 59.749 40.000 0.00 0.00 0.00 2.24
4122 14500 4.487714 TGGCCCTCAGTAAATCTAGTTG 57.512 45.455 0.00 0.00 0.00 3.16
4123 14501 3.206964 GGCCCTCAGTAAATCTAGTTGC 58.793 50.000 0.00 0.00 0.00 4.17
4124 14502 3.118223 GGCCCTCAGTAAATCTAGTTGCT 60.118 47.826 0.00 0.00 0.00 3.91
4125 14503 3.873952 GCCCTCAGTAAATCTAGTTGCTG 59.126 47.826 5.22 5.22 41.15 4.41
4126 14504 4.383118 GCCCTCAGTAAATCTAGTTGCTGA 60.383 45.833 11.59 11.59 44.69 4.26
4127 14505 5.686124 GCCCTCAGTAAATCTAGTTGCTGAT 60.686 44.000 12.26 0.00 45.39 2.90
4128 14506 6.352516 CCCTCAGTAAATCTAGTTGCTGATT 58.647 40.000 12.26 0.00 45.39 2.57
4129 14507 7.500992 CCCTCAGTAAATCTAGTTGCTGATTA 58.499 38.462 12.26 0.00 45.39 1.75
4130 14508 8.153550 CCCTCAGTAAATCTAGTTGCTGATTAT 58.846 37.037 12.26 0.00 45.39 1.28
4131 14509 9.202273 CCTCAGTAAATCTAGTTGCTGATTATC 57.798 37.037 12.26 0.00 45.39 1.75
4132 14510 9.202273 CTCAGTAAATCTAGTTGCTGATTATCC 57.798 37.037 12.26 0.00 45.39 2.59
4133 14511 8.704668 TCAGTAAATCTAGTTGCTGATTATCCA 58.295 33.333 9.02 0.00 42.86 3.41
4134 14512 9.330063 CAGTAAATCTAGTTGCTGATTATCCAA 57.670 33.333 5.56 0.00 42.02 3.53
4135 14513 9.331282 AGTAAATCTAGTTGCTGATTATCCAAC 57.669 33.333 6.32 6.32 39.20 3.77
4136 14514 9.109393 GTAAATCTAGTTGCTGATTATCCAACA 57.891 33.333 13.79 0.00 40.85 3.33
4137 14515 8.757982 AAATCTAGTTGCTGATTATCCAACAT 57.242 30.769 13.79 5.14 40.85 2.71
4138 14516 7.741027 ATCTAGTTGCTGATTATCCAACATG 57.259 36.000 13.79 0.00 40.85 3.21
4139 14517 6.057533 TCTAGTTGCTGATTATCCAACATGG 58.942 40.000 13.79 0.00 40.85 3.66
4140 14518 4.603131 AGTTGCTGATTATCCAACATGGT 58.397 39.130 13.79 0.00 40.85 3.55
4141 14519 5.754782 AGTTGCTGATTATCCAACATGGTA 58.245 37.500 13.79 0.00 40.85 3.25
4142 14520 6.367983 AGTTGCTGATTATCCAACATGGTAT 58.632 36.000 13.79 0.00 40.85 2.73
4143 14521 6.488006 AGTTGCTGATTATCCAACATGGTATC 59.512 38.462 13.79 0.00 40.85 2.24
4144 14522 5.939447 TGCTGATTATCCAACATGGTATCA 58.061 37.500 0.00 0.00 39.03 2.15
4145 14523 5.999600 TGCTGATTATCCAACATGGTATCAG 59.000 40.000 13.83 13.83 43.41 2.90
4146 14524 6.183361 TGCTGATTATCCAACATGGTATCAGA 60.183 38.462 20.00 6.59 43.34 3.27
4147 14525 6.883217 GCTGATTATCCAACATGGTATCAGAT 59.117 38.462 20.00 7.17 43.34 2.90
4148 14526 7.148289 GCTGATTATCCAACATGGTATCAGATG 60.148 40.741 20.00 0.73 43.34 2.90
4149 14527 6.656270 TGATTATCCAACATGGTATCAGATGC 59.344 38.462 0.00 0.00 39.03 3.91
4150 14528 4.719026 ATCCAACATGGTATCAGATGCT 57.281 40.909 0.00 0.00 39.03 3.79
4151 14529 5.830799 ATCCAACATGGTATCAGATGCTA 57.169 39.130 0.00 0.00 39.03 3.49
4152 14530 5.219343 TCCAACATGGTATCAGATGCTAG 57.781 43.478 0.00 0.00 39.03 3.42
4153 14531 4.040829 TCCAACATGGTATCAGATGCTAGG 59.959 45.833 0.00 0.00 39.03 3.02
4154 14532 4.321718 CAACATGGTATCAGATGCTAGGG 58.678 47.826 0.00 0.00 0.00 3.53
4155 14533 3.591789 ACATGGTATCAGATGCTAGGGT 58.408 45.455 0.00 0.00 0.00 4.34
4156 14534 4.752063 ACATGGTATCAGATGCTAGGGTA 58.248 43.478 0.00 0.00 0.00 3.69
4157 14535 4.774726 ACATGGTATCAGATGCTAGGGTAG 59.225 45.833 0.00 0.00 0.00 3.18
4170 14548 3.162154 GGTAGCCCCTTCCTCCCG 61.162 72.222 0.00 0.00 0.00 5.14
4171 14549 3.862991 GTAGCCCCTTCCTCCCGC 61.863 72.222 0.00 0.00 0.00 6.13
4172 14550 4.408396 TAGCCCCTTCCTCCCGCA 62.408 66.667 0.00 0.00 0.00 5.69
4176 14554 3.470888 CCCTTCCTCCCGCACGAT 61.471 66.667 0.00 0.00 0.00 3.73
4177 14555 2.202932 CCTTCCTCCCGCACGATG 60.203 66.667 0.00 0.00 0.00 3.84
4178 14556 2.892425 CTTCCTCCCGCACGATGC 60.892 66.667 0.00 0.00 40.69 3.91
4179 14557 3.664025 CTTCCTCCCGCACGATGCA 62.664 63.158 9.95 0.00 45.36 3.96
4180 14558 3.247056 TTCCTCCCGCACGATGCAA 62.247 57.895 9.95 0.00 45.36 4.08
4181 14559 3.499737 CCTCCCGCACGATGCAAC 61.500 66.667 9.95 0.00 45.36 4.17
4182 14560 2.434884 CTCCCGCACGATGCAACT 60.435 61.111 9.95 0.00 45.36 3.16
4183 14561 2.434185 TCCCGCACGATGCAACTC 60.434 61.111 9.95 0.00 45.36 3.01
4184 14562 3.499737 CCCGCACGATGCAACTCC 61.500 66.667 9.95 0.00 45.36 3.85
4185 14563 3.853330 CCGCACGATGCAACTCCG 61.853 66.667 9.95 0.00 45.36 4.63
4186 14564 3.112075 CGCACGATGCAACTCCGT 61.112 61.111 9.95 0.00 45.36 4.69
4188 14566 2.476051 CACGATGCAACTCCGTGC 59.524 61.111 16.90 0.00 45.26 5.34
4194 14572 2.551270 GCAACTCCGTGCACTTCG 59.449 61.111 16.19 1.09 44.29 3.79
4195 14573 2.244651 GCAACTCCGTGCACTTCGT 61.245 57.895 16.19 5.63 44.29 3.85
4196 14574 0.942410 GCAACTCCGTGCACTTCGTA 60.942 55.000 16.19 0.00 44.29 3.43
4197 14575 0.782384 CAACTCCGTGCACTTCGTAC 59.218 55.000 16.19 0.00 0.00 3.67
4198 14576 0.319297 AACTCCGTGCACTTCGTACC 60.319 55.000 16.19 0.00 0.00 3.34
4199 14577 1.177256 ACTCCGTGCACTTCGTACCT 61.177 55.000 16.19 0.00 0.00 3.08
4200 14578 0.806868 CTCCGTGCACTTCGTACCTA 59.193 55.000 16.19 0.00 0.00 3.08
4201 14579 0.806868 TCCGTGCACTTCGTACCTAG 59.193 55.000 16.19 0.00 0.00 3.02
4202 14580 0.801067 CCGTGCACTTCGTACCTAGC 60.801 60.000 16.19 0.00 0.00 3.42
4203 14581 0.801067 CGTGCACTTCGTACCTAGCC 60.801 60.000 16.19 0.00 0.00 3.93
4204 14582 0.531200 GTGCACTTCGTACCTAGCCT 59.469 55.000 10.32 0.00 0.00 4.58
4205 14583 0.815734 TGCACTTCGTACCTAGCCTC 59.184 55.000 0.00 0.00 0.00 4.70
4206 14584 0.102663 GCACTTCGTACCTAGCCTCC 59.897 60.000 0.00 0.00 0.00 4.30
4207 14585 0.381089 CACTTCGTACCTAGCCTCCG 59.619 60.000 0.00 0.00 0.00 4.63
4208 14586 0.750911 ACTTCGTACCTAGCCTCCGG 60.751 60.000 0.00 0.00 0.00 5.14
4247 14625 4.729918 CAGCTGTCCCTGGCCACC 62.730 72.222 0.00 0.00 0.00 4.61
4248 14626 4.990910 AGCTGTCCCTGGCCACCT 62.991 66.667 0.00 0.00 0.00 4.00
4249 14627 4.416738 GCTGTCCCTGGCCACCTC 62.417 72.222 0.00 0.00 0.00 3.85
4250 14628 3.721706 CTGTCCCTGGCCACCTCC 61.722 72.222 0.00 0.00 0.00 4.30
4251 14629 4.270153 TGTCCCTGGCCACCTCCT 62.270 66.667 0.00 0.00 0.00 3.69
4252 14630 3.403558 GTCCCTGGCCACCTCCTC 61.404 72.222 0.00 0.00 0.00 3.71
4253 14631 3.615811 TCCCTGGCCACCTCCTCT 61.616 66.667 0.00 0.00 0.00 3.69
4254 14632 3.086600 CCCTGGCCACCTCCTCTC 61.087 72.222 0.00 0.00 0.00 3.20
4255 14633 3.086600 CCTGGCCACCTCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
4256 14634 2.040278 CTGGCCACCTCCTCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
4257 14635 1.614824 CTGGCCACCTCCTCTCCTT 60.615 63.158 0.00 0.00 0.00 3.36
4258 14636 1.613630 TGGCCACCTCCTCTCCTTC 60.614 63.158 0.00 0.00 0.00 3.46
4259 14637 2.371259 GGCCACCTCCTCTCCTTCC 61.371 68.421 0.00 0.00 0.00 3.46
4260 14638 1.306568 GCCACCTCCTCTCCTTCCT 60.307 63.158 0.00 0.00 0.00 3.36
4261 14639 1.334384 GCCACCTCCTCTCCTTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
4262 14640 0.338120 CCACCTCCTCTCCTTCCTCT 59.662 60.000 0.00 0.00 0.00 3.69
4263 14641 1.484038 CACCTCCTCTCCTTCCTCTG 58.516 60.000 0.00 0.00 0.00 3.35
4264 14642 0.338120 ACCTCCTCTCCTTCCTCTGG 59.662 60.000 0.00 0.00 0.00 3.86
4265 14643 1.048160 CCTCCTCTCCTTCCTCTGGC 61.048 65.000 0.00 0.00 0.00 4.85
4266 14644 1.380515 TCCTCTCCTTCCTCTGGCG 60.381 63.158 0.00 0.00 0.00 5.69
4267 14645 2.498726 CTCTCCTTCCTCTGGCGC 59.501 66.667 0.00 0.00 0.00 6.53
4268 14646 2.283894 TCTCCTTCCTCTGGCGCA 60.284 61.111 10.83 0.00 0.00 6.09
4269 14647 2.186384 CTCCTTCCTCTGGCGCAG 59.814 66.667 10.83 4.99 0.00 5.18
4287 14665 4.394712 CTTTGCTCCGCCCCGACT 62.395 66.667 0.00 0.00 0.00 4.18
4288 14666 4.388499 TTTGCTCCGCCCCGACTC 62.388 66.667 0.00 0.00 0.00 3.36
4296 14674 4.436998 GCCCCGACTCGGTCACTG 62.437 72.222 16.35 0.41 46.80 3.66
4297 14675 4.436998 CCCCGACTCGGTCACTGC 62.437 72.222 16.35 0.00 46.80 4.40
4298 14676 3.374402 CCCGACTCGGTCACTGCT 61.374 66.667 16.35 0.00 46.80 4.24
4299 14677 2.651361 CCGACTCGGTCACTGCTT 59.349 61.111 9.51 0.00 42.73 3.91
4300 14678 1.444553 CCGACTCGGTCACTGCTTC 60.445 63.158 9.51 0.00 42.73 3.86
4301 14679 1.797933 CGACTCGGTCACTGCTTCG 60.798 63.158 5.15 0.00 32.09 3.79
4302 14680 2.049063 ACTCGGTCACTGCTTCGC 60.049 61.111 0.00 0.00 0.00 4.70
4303 14681 3.175240 CTCGGTCACTGCTTCGCG 61.175 66.667 0.00 0.00 0.00 5.87
4335 14713 3.771160 GGTCGTGGCAGTCCGGAT 61.771 66.667 7.81 0.00 34.14 4.18
4336 14714 2.202756 GTCGTGGCAGTCCGGATC 60.203 66.667 7.81 0.93 34.14 3.36
4337 14715 3.458163 TCGTGGCAGTCCGGATCC 61.458 66.667 7.81 10.51 34.14 3.36
4338 14716 4.873129 CGTGGCAGTCCGGATCCG 62.873 72.222 27.65 27.65 39.44 4.18
4345 14723 4.851179 GTCCGGATCCGCCCCAAC 62.851 72.222 29.12 15.75 38.24 3.77
4347 14725 4.856801 CCGGATCCGCCCCAACTG 62.857 72.222 29.12 8.54 38.24 3.16
4357 14735 4.473520 CCCAACTGCCGCCGATCT 62.474 66.667 0.00 0.00 0.00 2.75
4358 14736 3.197790 CCAACTGCCGCCGATCTG 61.198 66.667 0.00 0.00 0.00 2.90
4359 14737 3.869272 CAACTGCCGCCGATCTGC 61.869 66.667 0.00 0.00 0.00 4.26
4411 14789 4.577246 CCGCTGCGGCTCTACTCC 62.577 72.222 29.58 0.00 41.17 3.85
4439 14817 3.715097 AGCCACTCCTGCTCTGCC 61.715 66.667 0.00 0.00 32.41 4.85
4440 14818 4.792804 GCCACTCCTGCTCTGCCC 62.793 72.222 0.00 0.00 0.00 5.36
4441 14819 4.106925 CCACTCCTGCTCTGCCCC 62.107 72.222 0.00 0.00 0.00 5.80
4442 14820 4.463879 CACTCCTGCTCTGCCCCG 62.464 72.222 0.00 0.00 0.00 5.73
4466 14844 3.797546 GCTGCTCTGCGCCACTTC 61.798 66.667 4.18 0.00 38.05 3.01
4467 14845 3.123620 CTGCTCTGCGCCACTTCC 61.124 66.667 4.18 0.00 38.05 3.46
4491 14869 3.592814 CGCCGCTCGGATCTACCA 61.593 66.667 13.11 0.00 38.90 3.25
4492 14870 2.336809 GCCGCTCGGATCTACCAG 59.663 66.667 13.11 0.00 38.90 4.00
4493 14871 2.336809 CCGCTCGGATCTACCAGC 59.663 66.667 1.35 0.00 38.49 4.85
4494 14872 2.196925 CCGCTCGGATCTACCAGCT 61.197 63.158 1.35 0.00 39.15 4.24
4495 14873 1.007964 CGCTCGGATCTACCAGCTG 60.008 63.158 6.78 6.78 39.15 4.24
4496 14874 1.729470 CGCTCGGATCTACCAGCTGT 61.729 60.000 13.81 3.45 39.15 4.40
4497 14875 0.461961 GCTCGGATCTACCAGCTGTT 59.538 55.000 13.81 0.00 38.66 3.16
4498 14876 1.804372 GCTCGGATCTACCAGCTGTTG 60.804 57.143 13.81 0.00 38.66 3.33
4499 14877 0.175760 TCGGATCTACCAGCTGTTGC 59.824 55.000 13.81 0.00 38.90 4.17
4500 14878 0.108186 CGGATCTACCAGCTGTTGCA 60.108 55.000 13.81 0.00 42.74 4.08
4501 14879 1.661341 GGATCTACCAGCTGTTGCAG 58.339 55.000 13.81 3.98 42.74 4.41
4543 14921 3.677648 CCGTGTCTTCGTCCCGGT 61.678 66.667 0.00 0.00 34.10 5.28
4544 14922 2.126580 CGTGTCTTCGTCCCGGTC 60.127 66.667 0.00 0.00 0.00 4.79
4545 14923 2.911484 CGTGTCTTCGTCCCGGTCA 61.911 63.158 0.00 0.00 0.00 4.02
4546 14924 1.080705 GTGTCTTCGTCCCGGTCAG 60.081 63.158 0.00 0.00 0.00 3.51
4547 14925 2.273179 TGTCTTCGTCCCGGTCAGG 61.273 63.158 0.00 0.00 40.63 3.86
4548 14926 2.116772 TCTTCGTCCCGGTCAGGT 59.883 61.111 0.00 0.00 38.74 4.00
4549 14927 1.532316 TCTTCGTCCCGGTCAGGTT 60.532 57.895 0.00 0.00 38.74 3.50
4550 14928 1.374252 CTTCGTCCCGGTCAGGTTG 60.374 63.158 0.00 0.00 38.74 3.77
4551 14929 2.781595 CTTCGTCCCGGTCAGGTTGG 62.782 65.000 0.00 0.00 38.74 3.77
4553 14931 3.637273 GTCCCGGTCAGGTTGGCT 61.637 66.667 0.00 0.00 38.74 4.75
4554 14932 3.319198 TCCCGGTCAGGTTGGCTC 61.319 66.667 0.00 0.00 38.74 4.70
4555 14933 4.410400 CCCGGTCAGGTTGGCTCC 62.410 72.222 0.00 0.00 38.74 4.70
4556 14934 4.410400 CCGGTCAGGTTGGCTCCC 62.410 72.222 0.00 0.00 34.51 4.30
4557 14935 4.760047 CGGTCAGGTTGGCTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
4558 14936 3.319198 GGTCAGGTTGGCTCCCGA 61.319 66.667 0.00 0.00 0.00 5.14
4559 14937 2.047179 GTCAGGTTGGCTCCCGAC 60.047 66.667 0.00 1.38 37.19 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.598517 AAAAATGCATCTAACTTGTCTCAAAAA 57.401 25.926 0.00 0.00 0.00 1.94
31 32 3.890756 ACACATGCATCTCACCTCAAAAA 59.109 39.130 0.00 0.00 0.00 1.94
32 33 3.253921 CACACATGCATCTCACCTCAAAA 59.746 43.478 0.00 0.00 0.00 2.44
36 37 1.736126 CACACACATGCATCTCACCTC 59.264 52.381 0.00 0.00 0.00 3.85
39 40 1.812235 TCCACACACATGCATCTCAC 58.188 50.000 0.00 0.00 0.00 3.51
171 185 2.734673 CGGAGAGCAGAACAAGCGC 61.735 63.158 0.00 0.00 37.01 5.92
190 218 0.664767 AGAGAAAGCGCACGTCTGTC 60.665 55.000 11.47 0.00 0.00 3.51
191 219 0.941463 CAGAGAAAGCGCACGTCTGT 60.941 55.000 11.47 4.35 31.77 3.41
196 224 0.946221 AAGGACAGAGAAAGCGCACG 60.946 55.000 11.47 0.00 0.00 5.34
341 4176 1.812093 GTACGTTGCGCCCATGCTA 60.812 57.895 4.18 0.00 35.36 3.49
382 4433 4.227538 GCTGACATGATGCTATGAATTGC 58.772 43.478 0.00 0.00 0.00 3.56
385 4436 5.131067 ACTTGCTGACATGATGCTATGAAT 58.869 37.500 0.00 0.00 0.00 2.57
388 4439 4.895224 AACTTGCTGACATGATGCTATG 57.105 40.909 0.00 0.00 0.00 2.23
392 4443 5.239359 TCATAAACTTGCTGACATGATGC 57.761 39.130 0.00 0.74 0.00 3.91
473 4528 1.269448 CGCCAACAGTAAAAGCATGGT 59.731 47.619 0.00 0.00 0.00 3.55
509 4565 1.447140 GCACGTTGCCGACTCCATA 60.447 57.895 0.00 0.00 37.42 2.74
967 8977 8.912988 AGAGAGATCTAAGTAAGTGAGATTTGG 58.087 37.037 0.00 0.00 30.01 3.28
1130 9428 5.116084 TGAAAGATAATTGTCTCCCAGGG 57.884 43.478 5.07 0.00 0.00 4.45
1185 9489 5.461032 AGCTTAGATATTGGAGAGAACCG 57.539 43.478 0.00 0.00 0.00 4.44
1277 9584 4.933505 TCAAAAATGTTGCCACTCATGA 57.066 36.364 0.00 0.00 0.00 3.07
1304 9611 4.883354 CCAGGGAAGCCGGGATGC 62.883 72.222 2.18 0.00 0.00 3.91
1380 9687 3.922171 AGCTTCCAGAAGATGTTAGGG 57.078 47.619 11.57 0.00 40.79 3.53
1408 9715 9.059260 GTTATGTTGAAGGTTTAGGTTACTCAA 57.941 33.333 0.00 0.00 0.00 3.02
1412 9719 7.574404 GCTGGTTATGTTGAAGGTTTAGGTTAC 60.574 40.741 0.00 0.00 0.00 2.50
1416 9723 5.010282 AGCTGGTTATGTTGAAGGTTTAGG 58.990 41.667 0.00 0.00 0.00 2.69
1449 9756 4.963276 TGCATTTAAGAATTCCCAGTCG 57.037 40.909 0.65 0.00 0.00 4.18
1521 9966 2.383442 ACTGCGGTATAGATCCCAGT 57.617 50.000 0.00 0.00 34.30 4.00
1523 9968 2.769663 ACAAACTGCGGTATAGATCCCA 59.230 45.455 0.00 0.00 0.00 4.37
1842 10288 3.358118 GACTAGCACTAAGAGTGGGAGT 58.642 50.000 8.61 0.00 46.01 3.85
1932 10384 7.939039 CCTTGGAGATTATTGTGGCTAAGATTA 59.061 37.037 0.00 0.00 0.00 1.75
2253 10708 7.793927 AGAATTTTCGAATACTCCATTCCTC 57.206 36.000 0.00 0.00 40.07 3.71
2587 11047 7.288158 AGTTAACTTTCCTCTGTAGACTGAACT 59.712 37.037 1.12 0.00 0.00 3.01
2791 11252 6.158344 TCCAAATTCCCATTAGCCATGAATTT 59.842 34.615 0.00 0.00 42.97 1.82
2800 11261 4.441913 CCATGTGTCCAAATTCCCATTAGC 60.442 45.833 0.00 0.00 0.00 3.09
2927 11389 7.485913 CACAATGTATAATCTGCCTTTCACAAC 59.514 37.037 0.00 0.00 0.00 3.32
3019 11483 1.554617 TGAATGTCCGATGAGGCTTGA 59.445 47.619 0.00 0.00 40.77 3.02
3115 11583 9.593134 TGTAAATAATACATGGCCATCAAAAAC 57.407 29.630 17.61 6.21 0.00 2.43
3501 13866 4.725359 TGATGTTCTGATTGAATGCAACG 58.275 39.130 0.00 0.00 36.72 4.10
3605 13970 3.343941 TTGAGGGATAAACTCAACCCG 57.656 47.619 3.94 0.00 46.70 5.28
3662 14037 1.654105 GTGTACTCGTGGCTCATTTCG 59.346 52.381 0.00 0.00 0.00 3.46
3794 14171 4.763279 TCTGAGACGCGGATATATAAACCA 59.237 41.667 12.47 0.00 0.00 3.67
3795 14172 5.306532 TCTGAGACGCGGATATATAAACC 57.693 43.478 12.47 0.00 0.00 3.27
3796 14173 8.182881 AGTAATCTGAGACGCGGATATATAAAC 58.817 37.037 12.47 0.00 41.80 2.01
3797 14174 8.277490 AGTAATCTGAGACGCGGATATATAAA 57.723 34.615 12.47 0.00 41.80 1.40
3798 14175 7.860918 AGTAATCTGAGACGCGGATATATAA 57.139 36.000 12.47 0.00 41.80 0.98
3799 14176 7.201705 CCAAGTAATCTGAGACGCGGATATATA 60.202 40.741 12.47 0.00 41.80 0.86
3800 14177 6.404844 CCAAGTAATCTGAGACGCGGATATAT 60.405 42.308 12.47 0.00 41.80 0.86
3801 14178 5.106277 CCAAGTAATCTGAGACGCGGATATA 60.106 44.000 12.47 0.00 41.80 0.86
3802 14179 4.321304 CCAAGTAATCTGAGACGCGGATAT 60.321 45.833 12.47 0.00 41.80 1.63
3803 14180 3.004419 CCAAGTAATCTGAGACGCGGATA 59.996 47.826 12.47 0.00 41.80 2.59
3804 14181 2.223829 CCAAGTAATCTGAGACGCGGAT 60.224 50.000 12.47 0.00 44.55 4.18
3898 14276 4.022935 CAGTAGTTTGCAGCTTGGATTCAA 60.023 41.667 0.00 0.00 0.00 2.69
3908 14286 1.807142 GAAGACCCAGTAGTTTGCAGC 59.193 52.381 0.00 0.00 0.00 5.25
3909 14287 3.244215 TGAGAAGACCCAGTAGTTTGCAG 60.244 47.826 0.00 0.00 0.00 4.41
3919 14297 5.923733 AGTATACAAGTGAGAAGACCCAG 57.076 43.478 5.50 0.00 0.00 4.45
3924 14302 9.470399 TGGTACAATAGTATACAAGTGAGAAGA 57.530 33.333 5.50 0.00 31.92 2.87
3928 14306 9.737427 CTTCTGGTACAATAGTATACAAGTGAG 57.263 37.037 5.50 0.00 38.70 3.51
3931 14309 8.834004 TCCTTCTGGTACAATAGTATACAAGT 57.166 34.615 5.50 0.65 38.70 3.16
3947 14325 1.066143 CACGCCAAGTATCCTTCTGGT 60.066 52.381 0.00 0.00 34.23 4.00
3948 14326 1.066143 ACACGCCAAGTATCCTTCTGG 60.066 52.381 0.00 0.00 0.00 3.86
3949 14327 2.386661 ACACGCCAAGTATCCTTCTG 57.613 50.000 0.00 0.00 0.00 3.02
3970 14348 9.297037 ACAGTATTTTATTTAGTTTCCTGCAGT 57.703 29.630 13.81 0.00 0.00 4.40
3994 14372 5.984695 ACAGAGAGCACTATTAGTCAACA 57.015 39.130 0.00 0.00 0.00 3.33
3995 14373 7.763356 TCTAACAGAGAGCACTATTAGTCAAC 58.237 38.462 0.00 0.00 0.00 3.18
4006 14384 9.834628 GAACTATACATATCTAACAGAGAGCAC 57.165 37.037 0.00 0.00 37.70 4.40
4020 14398 9.998106 GGGATGTACACAAAGAACTATACATAT 57.002 33.333 0.00 0.00 34.30 1.78
4021 14399 8.426489 GGGGATGTACACAAAGAACTATACATA 58.574 37.037 0.00 0.00 34.30 2.29
4022 14400 7.280356 GGGGATGTACACAAAGAACTATACAT 58.720 38.462 0.00 0.00 36.28 2.29
4023 14401 6.628621 CGGGGATGTACACAAAGAACTATACA 60.629 42.308 0.00 0.00 0.00 2.29
4024 14402 5.751990 CGGGGATGTACACAAAGAACTATAC 59.248 44.000 0.00 0.00 0.00 1.47
4025 14403 5.422970 ACGGGGATGTACACAAAGAACTATA 59.577 40.000 0.00 0.00 0.00 1.31
4026 14404 4.224370 ACGGGGATGTACACAAAGAACTAT 59.776 41.667 0.00 0.00 0.00 2.12
4027 14405 3.579586 ACGGGGATGTACACAAAGAACTA 59.420 43.478 0.00 0.00 0.00 2.24
4028 14406 2.370849 ACGGGGATGTACACAAAGAACT 59.629 45.455 0.00 0.00 0.00 3.01
4029 14407 2.774687 ACGGGGATGTACACAAAGAAC 58.225 47.619 0.00 0.00 0.00 3.01
4030 14408 3.142951 CAACGGGGATGTACACAAAGAA 58.857 45.455 0.00 0.00 0.00 2.52
4031 14409 2.105134 ACAACGGGGATGTACACAAAGA 59.895 45.455 0.00 0.00 0.00 2.52
4032 14410 2.500229 ACAACGGGGATGTACACAAAG 58.500 47.619 0.00 0.00 0.00 2.77
4033 14411 2.642154 ACAACGGGGATGTACACAAA 57.358 45.000 0.00 0.00 0.00 2.83
4034 14412 3.985019 ATACAACGGGGATGTACACAA 57.015 42.857 0.00 0.00 36.19 3.33
4035 14413 4.141892 CCTTATACAACGGGGATGTACACA 60.142 45.833 0.00 0.00 36.19 3.72
4036 14414 4.374399 CCTTATACAACGGGGATGTACAC 58.626 47.826 0.00 0.00 36.19 2.90
4037 14415 3.388676 CCCTTATACAACGGGGATGTACA 59.611 47.826 0.00 0.00 41.25 2.90
4038 14416 3.999046 CCCTTATACAACGGGGATGTAC 58.001 50.000 0.00 0.00 41.25 2.90
4045 14423 0.549469 AAGGCCCCTTATACAACGGG 59.451 55.000 0.00 0.00 38.70 5.28
4046 14424 2.092592 AGAAAGGCCCCTTATACAACGG 60.093 50.000 0.00 0.00 34.84 4.44
4047 14425 2.943033 CAGAAAGGCCCCTTATACAACG 59.057 50.000 0.00 0.00 34.84 4.10
4048 14426 2.688446 GCAGAAAGGCCCCTTATACAAC 59.312 50.000 0.00 0.00 34.84 3.32
4049 14427 2.310349 TGCAGAAAGGCCCCTTATACAA 59.690 45.455 0.00 0.00 34.84 2.41
4050 14428 1.919654 TGCAGAAAGGCCCCTTATACA 59.080 47.619 0.00 0.00 34.84 2.29
4051 14429 2.092375 AGTGCAGAAAGGCCCCTTATAC 60.092 50.000 0.00 0.00 34.84 1.47
4052 14430 2.205342 AGTGCAGAAAGGCCCCTTATA 58.795 47.619 0.00 0.00 34.84 0.98
4053 14431 1.002857 AGTGCAGAAAGGCCCCTTAT 58.997 50.000 0.00 0.00 34.84 1.73
4054 14432 0.777446 AAGTGCAGAAAGGCCCCTTA 59.223 50.000 0.00 0.00 34.84 2.69
4055 14433 0.105504 AAAGTGCAGAAAGGCCCCTT 60.106 50.000 0.00 0.00 37.98 3.95
4056 14434 0.777446 TAAAGTGCAGAAAGGCCCCT 59.223 50.000 0.00 0.00 0.00 4.79
4057 14435 0.888619 GTAAAGTGCAGAAAGGCCCC 59.111 55.000 0.00 0.00 0.00 5.80
4058 14436 0.888619 GGTAAAGTGCAGAAAGGCCC 59.111 55.000 0.00 0.00 0.00 5.80
4059 14437 1.269723 GTGGTAAAGTGCAGAAAGGCC 59.730 52.381 0.00 0.00 0.00 5.19
4060 14438 1.953686 TGTGGTAAAGTGCAGAAAGGC 59.046 47.619 0.00 0.00 0.00 4.35
4061 14439 4.074970 AGATGTGGTAAAGTGCAGAAAGG 58.925 43.478 0.00 0.00 0.00 3.11
4062 14440 4.516698 ACAGATGTGGTAAAGTGCAGAAAG 59.483 41.667 0.00 0.00 0.00 2.62
4063 14441 4.460263 ACAGATGTGGTAAAGTGCAGAAA 58.540 39.130 0.00 0.00 0.00 2.52
4064 14442 4.085357 ACAGATGTGGTAAAGTGCAGAA 57.915 40.909 0.00 0.00 0.00 3.02
4065 14443 3.769739 ACAGATGTGGTAAAGTGCAGA 57.230 42.857 0.00 0.00 0.00 4.26
4066 14444 6.763135 ACATATACAGATGTGGTAAAGTGCAG 59.237 38.462 0.00 0.00 38.64 4.41
4067 14445 6.649155 ACATATACAGATGTGGTAAAGTGCA 58.351 36.000 0.00 0.00 38.64 4.57
4068 14446 7.926555 AGTACATATACAGATGTGGTAAAGTGC 59.073 37.037 0.00 0.00 40.31 4.40
4069 14447 9.249457 CAGTACATATACAGATGTGGTAAAGTG 57.751 37.037 0.00 0.00 40.31 3.16
4070 14448 8.421784 CCAGTACATATACAGATGTGGTAAAGT 58.578 37.037 0.00 0.00 40.31 2.66
4071 14449 8.421784 ACCAGTACATATACAGATGTGGTAAAG 58.578 37.037 0.00 0.00 40.31 1.85
4072 14450 8.313944 ACCAGTACATATACAGATGTGGTAAA 57.686 34.615 0.00 0.00 40.31 2.01
4073 14451 7.783119 AGACCAGTACATATACAGATGTGGTAA 59.217 37.037 0.00 0.00 40.31 2.85
4074 14452 7.295340 AGACCAGTACATATACAGATGTGGTA 58.705 38.462 0.00 0.00 40.31 3.25
4075 14453 6.136857 AGACCAGTACATATACAGATGTGGT 58.863 40.000 0.00 0.00 40.31 4.16
4076 14454 6.656632 AGACCAGTACATATACAGATGTGG 57.343 41.667 0.00 0.00 40.31 4.17
4077 14455 7.439356 CCAAAGACCAGTACATATACAGATGTG 59.561 40.741 0.00 0.00 40.31 3.21
4078 14456 7.500992 CCAAAGACCAGTACATATACAGATGT 58.499 38.462 0.00 0.00 42.68 3.06
4079 14457 6.425114 GCCAAAGACCAGTACATATACAGATG 59.575 42.308 0.00 0.00 33.30 2.90
4080 14458 6.464465 GGCCAAAGACCAGTACATATACAGAT 60.464 42.308 0.00 0.00 33.30 2.90
4081 14459 5.163343 GGCCAAAGACCAGTACATATACAGA 60.163 44.000 0.00 0.00 33.30 3.41
4082 14460 5.057149 GGCCAAAGACCAGTACATATACAG 58.943 45.833 0.00 0.00 33.30 2.74
4083 14461 4.141574 GGGCCAAAGACCAGTACATATACA 60.142 45.833 4.39 0.00 33.30 2.29
4084 14462 4.102681 AGGGCCAAAGACCAGTACATATAC 59.897 45.833 6.18 0.00 0.00 1.47
4085 14463 4.303794 AGGGCCAAAGACCAGTACATATA 58.696 43.478 6.18 0.00 0.00 0.86
4086 14464 3.123273 AGGGCCAAAGACCAGTACATAT 58.877 45.455 6.18 0.00 0.00 1.78
4087 14465 2.504175 GAGGGCCAAAGACCAGTACATA 59.496 50.000 6.18 0.00 0.00 2.29
4088 14466 1.282157 GAGGGCCAAAGACCAGTACAT 59.718 52.381 6.18 0.00 0.00 2.29
4089 14467 0.690762 GAGGGCCAAAGACCAGTACA 59.309 55.000 6.18 0.00 0.00 2.90
4090 14468 0.690762 TGAGGGCCAAAGACCAGTAC 59.309 55.000 6.18 0.00 0.00 2.73
4091 14469 0.984230 CTGAGGGCCAAAGACCAGTA 59.016 55.000 6.18 0.00 0.00 2.74
4092 14470 1.062488 ACTGAGGGCCAAAGACCAGT 61.062 55.000 6.18 6.12 0.00 4.00
4093 14471 0.984230 TACTGAGGGCCAAAGACCAG 59.016 55.000 6.18 5.47 0.00 4.00
4094 14472 1.440618 TTACTGAGGGCCAAAGACCA 58.559 50.000 6.18 0.00 0.00 4.02
4095 14473 2.579410 TTTACTGAGGGCCAAAGACC 57.421 50.000 6.18 0.00 0.00 3.85
4096 14474 3.956744 AGATTTACTGAGGGCCAAAGAC 58.043 45.455 6.18 0.00 0.00 3.01
4097 14475 4.783227 ACTAGATTTACTGAGGGCCAAAGA 59.217 41.667 6.18 0.00 0.00 2.52
4098 14476 5.104259 ACTAGATTTACTGAGGGCCAAAG 57.896 43.478 6.18 4.93 0.00 2.77
4099 14477 5.253330 CAACTAGATTTACTGAGGGCCAAA 58.747 41.667 6.18 0.00 0.00 3.28
4100 14478 4.843728 CAACTAGATTTACTGAGGGCCAA 58.156 43.478 6.18 0.00 0.00 4.52
4101 14479 3.370527 GCAACTAGATTTACTGAGGGCCA 60.371 47.826 6.18 0.00 0.00 5.36
4102 14480 3.118223 AGCAACTAGATTTACTGAGGGCC 60.118 47.826 0.00 0.00 0.00 5.80
4103 14481 3.873952 CAGCAACTAGATTTACTGAGGGC 59.126 47.826 0.00 0.00 0.00 5.19
4104 14482 5.344743 TCAGCAACTAGATTTACTGAGGG 57.655 43.478 0.00 0.00 30.70 4.30
4105 14483 9.202273 GATAATCAGCAACTAGATTTACTGAGG 57.798 37.037 0.00 0.00 35.42 3.86
4106 14484 9.202273 GGATAATCAGCAACTAGATTTACTGAG 57.798 37.037 0.00 0.00 35.42 3.35
4107 14485 8.704668 TGGATAATCAGCAACTAGATTTACTGA 58.295 33.333 0.00 0.00 36.06 3.41
4108 14486 8.893219 TGGATAATCAGCAACTAGATTTACTG 57.107 34.615 0.00 0.00 36.07 2.74
4109 14487 9.331282 GTTGGATAATCAGCAACTAGATTTACT 57.669 33.333 0.00 0.00 36.07 2.24
4110 14488 9.109393 TGTTGGATAATCAGCAACTAGATTTAC 57.891 33.333 0.00 0.00 36.07 2.01
4111 14489 9.851686 ATGTTGGATAATCAGCAACTAGATTTA 57.148 29.630 0.00 0.00 36.07 1.40
4112 14490 8.627403 CATGTTGGATAATCAGCAACTAGATTT 58.373 33.333 0.00 0.00 36.07 2.17
4113 14491 7.230108 CCATGTTGGATAATCAGCAACTAGATT 59.770 37.037 0.00 0.00 40.96 2.40
4114 14492 6.713903 CCATGTTGGATAATCAGCAACTAGAT 59.286 38.462 0.00 0.00 40.96 1.98
4115 14493 6.057533 CCATGTTGGATAATCAGCAACTAGA 58.942 40.000 0.00 0.00 40.96 2.43
4116 14494 5.824624 ACCATGTTGGATAATCAGCAACTAG 59.175 40.000 0.00 0.00 40.96 2.57
4117 14495 5.754782 ACCATGTTGGATAATCAGCAACTA 58.245 37.500 0.00 0.00 40.96 2.24
4118 14496 4.603131 ACCATGTTGGATAATCAGCAACT 58.397 39.130 0.00 0.00 40.96 3.16
4119 14497 4.989279 ACCATGTTGGATAATCAGCAAC 57.011 40.909 0.00 0.00 40.96 4.17
4120 14498 6.363882 TGATACCATGTTGGATAATCAGCAA 58.636 36.000 0.00 0.00 40.96 3.91
4121 14499 5.939447 TGATACCATGTTGGATAATCAGCA 58.061 37.500 0.00 0.00 40.96 4.41
4122 14500 6.233434 TCTGATACCATGTTGGATAATCAGC 58.767 40.000 20.72 0.00 43.71 4.26
4123 14501 7.148289 GCATCTGATACCATGTTGGATAATCAG 60.148 40.741 20.11 20.11 44.42 2.90
4124 14502 6.656270 GCATCTGATACCATGTTGGATAATCA 59.344 38.462 0.00 5.86 40.96 2.57
4125 14503 6.883217 AGCATCTGATACCATGTTGGATAATC 59.117 38.462 0.00 1.82 40.96 1.75
4126 14504 6.787170 AGCATCTGATACCATGTTGGATAAT 58.213 36.000 0.00 0.00 40.96 1.28
4127 14505 6.191657 AGCATCTGATACCATGTTGGATAA 57.808 37.500 0.00 0.00 40.96 1.75
4128 14506 5.830799 AGCATCTGATACCATGTTGGATA 57.169 39.130 0.00 0.00 40.96 2.59
4129 14507 4.719026 AGCATCTGATACCATGTTGGAT 57.281 40.909 0.00 0.00 40.96 3.41
4130 14508 4.040829 CCTAGCATCTGATACCATGTTGGA 59.959 45.833 0.00 0.00 40.96 3.53
4131 14509 4.321718 CCTAGCATCTGATACCATGTTGG 58.678 47.826 0.00 0.00 45.02 3.77
4132 14510 4.202398 ACCCTAGCATCTGATACCATGTTG 60.202 45.833 0.00 0.00 0.00 3.33
4133 14511 3.976654 ACCCTAGCATCTGATACCATGTT 59.023 43.478 0.00 0.00 0.00 2.71
4134 14512 3.591789 ACCCTAGCATCTGATACCATGT 58.408 45.455 0.00 0.00 0.00 3.21
4135 14513 5.336150 CTACCCTAGCATCTGATACCATG 57.664 47.826 0.00 0.00 0.00 3.66
4153 14531 3.162154 CGGGAGGAAGGGGCTACC 61.162 72.222 0.00 0.00 40.67 3.18
4154 14532 3.862991 GCGGGAGGAAGGGGCTAC 61.863 72.222 0.00 0.00 0.00 3.58
4155 14533 4.408396 TGCGGGAGGAAGGGGCTA 62.408 66.667 0.00 0.00 0.00 3.93
4159 14537 3.470888 ATCGTGCGGGAGGAAGGG 61.471 66.667 0.00 0.00 0.00 3.95
4160 14538 2.202932 CATCGTGCGGGAGGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
4161 14539 2.892425 GCATCGTGCGGGAGGAAG 60.892 66.667 0.00 0.00 31.71 3.46
4169 14547 3.353114 CACGGAGTTGCATCGTGCG 62.353 63.158 15.53 10.09 44.32 5.34
4170 14548 2.476051 CACGGAGTTGCATCGTGC 59.524 61.111 15.53 3.44 45.56 5.34
4172 14550 2.030412 TGCACGGAGTTGCATCGT 59.970 55.556 0.00 0.00 41.61 3.73
4173 14551 1.568612 AAGTGCACGGAGTTGCATCG 61.569 55.000 12.01 0.00 43.64 3.84
4174 14552 0.166814 GAAGTGCACGGAGTTGCATC 59.833 55.000 12.01 0.00 43.64 3.91
4175 14553 1.568612 CGAAGTGCACGGAGTTGCAT 61.569 55.000 12.01 0.00 43.64 3.96
4176 14554 2.243957 CGAAGTGCACGGAGTTGCA 61.244 57.895 12.01 0.00 41.61 4.08
4177 14555 0.942410 TACGAAGTGCACGGAGTTGC 60.942 55.000 12.01 0.00 45.73 4.17
4178 14556 0.782384 GTACGAAGTGCACGGAGTTG 59.218 55.000 12.01 4.99 45.73 3.16
4179 14557 3.190337 GTACGAAGTGCACGGAGTT 57.810 52.632 12.01 0.00 45.73 3.01
4180 14558 4.959446 GTACGAAGTGCACGGAGT 57.041 55.556 12.01 14.41 45.73 3.85
4187 14565 0.102663 GGAGGCTAGGTACGAAGTGC 59.897 60.000 0.00 0.00 45.73 4.40
4188 14566 0.381089 CGGAGGCTAGGTACGAAGTG 59.619 60.000 0.00 0.00 45.73 3.16
4189 14567 0.750911 CCGGAGGCTAGGTACGAAGT 60.751 60.000 0.00 0.00 46.14 3.01
4190 14568 2.031360 CCGGAGGCTAGGTACGAAG 58.969 63.158 0.00 0.00 46.14 3.79
4191 14569 4.247781 CCGGAGGCTAGGTACGAA 57.752 61.111 0.00 0.00 46.14 3.85
4233 14611 3.721706 GGAGGTGGCCAGGGACAG 61.722 72.222 5.11 0.00 31.40 3.51
4234 14612 4.270153 AGGAGGTGGCCAGGGACA 62.270 66.667 5.11 0.00 0.00 4.02
4235 14613 3.403558 GAGGAGGTGGCCAGGGAC 61.404 72.222 5.11 0.00 0.00 4.46
4236 14614 3.615811 AGAGGAGGTGGCCAGGGA 61.616 66.667 5.11 0.00 0.00 4.20
4237 14615 3.086600 GAGAGGAGGTGGCCAGGG 61.087 72.222 5.11 0.00 0.00 4.45
4238 14616 3.086600 GGAGAGGAGGTGGCCAGG 61.087 72.222 5.11 0.00 0.00 4.45
4239 14617 1.614824 AAGGAGAGGAGGTGGCCAG 60.615 63.158 5.11 0.00 0.00 4.85
4240 14618 1.613630 GAAGGAGAGGAGGTGGCCA 60.614 63.158 0.00 0.00 0.00 5.36
4241 14619 2.371259 GGAAGGAGAGGAGGTGGCC 61.371 68.421 0.00 0.00 0.00 5.36
4242 14620 1.306568 AGGAAGGAGAGGAGGTGGC 60.307 63.158 0.00 0.00 0.00 5.01
4243 14621 0.338120 AGAGGAAGGAGAGGAGGTGG 59.662 60.000 0.00 0.00 0.00 4.61
4244 14622 1.484038 CAGAGGAAGGAGAGGAGGTG 58.516 60.000 0.00 0.00 0.00 4.00
4245 14623 0.338120 CCAGAGGAAGGAGAGGAGGT 59.662 60.000 0.00 0.00 0.00 3.85
4246 14624 1.048160 GCCAGAGGAAGGAGAGGAGG 61.048 65.000 0.00 0.00 0.00 4.30
4247 14625 1.391157 CGCCAGAGGAAGGAGAGGAG 61.391 65.000 0.00 0.00 0.00 3.69
4248 14626 1.380515 CGCCAGAGGAAGGAGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
4249 14627 3.087666 GCGCCAGAGGAAGGAGAGG 62.088 68.421 0.00 0.00 0.00 3.69
4250 14628 2.295472 CTGCGCCAGAGGAAGGAGAG 62.295 65.000 4.18 0.00 32.44 3.20
4251 14629 2.283894 TGCGCCAGAGGAAGGAGA 60.284 61.111 4.18 0.00 0.00 3.71
4252 14630 2.186384 CTGCGCCAGAGGAAGGAG 59.814 66.667 4.18 0.00 32.44 3.69
4253 14631 4.087892 GCTGCGCCAGAGGAAGGA 62.088 66.667 4.18 0.00 32.44 3.36
4254 14632 3.618780 AAGCTGCGCCAGAGGAAGG 62.619 63.158 4.18 0.00 32.44 3.46
4255 14633 1.673665 AAAGCTGCGCCAGAGGAAG 60.674 57.895 4.18 0.00 32.44 3.46
4256 14634 1.968017 CAAAGCTGCGCCAGAGGAA 60.968 57.895 4.18 0.00 32.44 3.36
4257 14635 2.359107 CAAAGCTGCGCCAGAGGA 60.359 61.111 4.18 0.00 32.44 3.71
4258 14636 4.112341 GCAAAGCTGCGCCAGAGG 62.112 66.667 4.18 0.00 39.20 3.69
4283 14661 1.797933 CGAAGCAGTGACCGAGTCG 60.798 63.158 5.29 5.29 34.95 4.18
4284 14662 4.154613 CGAAGCAGTGACCGAGTC 57.845 61.111 0.00 0.00 0.00 3.36
4318 14696 3.718210 GATCCGGACTGCCACGACC 62.718 68.421 6.12 0.00 0.00 4.79
4319 14697 2.202756 GATCCGGACTGCCACGAC 60.203 66.667 6.12 0.00 0.00 4.34
4320 14698 3.458163 GGATCCGGACTGCCACGA 61.458 66.667 6.12 0.00 0.00 4.35
4321 14699 4.873129 CGGATCCGGACTGCCACG 62.873 72.222 26.95 1.14 35.56 4.94
4328 14706 4.851179 GTTGGGGCGGATCCGGAC 62.851 72.222 33.98 18.94 40.19 4.79
4330 14708 4.856801 CAGTTGGGGCGGATCCGG 62.857 72.222 33.98 16.82 40.19 5.14
4340 14718 4.473520 AGATCGGCGGCAGTTGGG 62.474 66.667 10.53 0.00 0.00 4.12
4341 14719 3.197790 CAGATCGGCGGCAGTTGG 61.198 66.667 10.53 0.00 0.00 3.77
4342 14720 3.869272 GCAGATCGGCGGCAGTTG 61.869 66.667 10.53 2.50 37.65 3.16
4395 14773 4.914420 CGGAGTAGAGCCGCAGCG 62.914 72.222 8.18 8.18 46.67 5.18
4422 14800 3.715097 GGCAGAGCAGGAGTGGCT 61.715 66.667 0.00 0.00 46.07 4.75
4423 14801 4.792804 GGGCAGAGCAGGAGTGGC 62.793 72.222 0.00 0.00 36.07 5.01
4424 14802 4.106925 GGGGCAGAGCAGGAGTGG 62.107 72.222 0.00 0.00 0.00 4.00
4425 14803 4.463879 CGGGGCAGAGCAGGAGTG 62.464 72.222 0.00 0.00 0.00 3.51
4474 14852 3.544167 CTGGTAGATCCGAGCGGCG 62.544 68.421 0.51 0.51 39.52 6.46
4475 14853 2.336809 CTGGTAGATCCGAGCGGC 59.663 66.667 3.59 0.00 39.52 6.53
4476 14854 2.196925 AGCTGGTAGATCCGAGCGG 61.197 63.158 1.74 1.74 41.64 5.52
4477 14855 1.007964 CAGCTGGTAGATCCGAGCG 60.008 63.158 5.57 0.00 41.64 5.03
4478 14856 0.461961 AACAGCTGGTAGATCCGAGC 59.538 55.000 19.93 0.00 39.16 5.03
4479 14857 1.804372 GCAACAGCTGGTAGATCCGAG 60.804 57.143 19.93 0.00 39.52 4.63
4480 14858 0.175760 GCAACAGCTGGTAGATCCGA 59.824 55.000 19.93 0.00 39.52 4.55
4481 14859 0.108186 TGCAACAGCTGGTAGATCCG 60.108 55.000 19.93 0.00 39.52 4.18
4482 14860 1.661341 CTGCAACAGCTGGTAGATCC 58.339 55.000 19.93 0.00 0.00 3.36
4536 14914 3.607370 GAGCCAACCTGACCGGGAC 62.607 68.421 6.32 0.00 36.97 4.46
4537 14915 3.319198 GAGCCAACCTGACCGGGA 61.319 66.667 6.32 0.00 36.97 5.14
4538 14916 4.410400 GGAGCCAACCTGACCGGG 62.410 72.222 6.32 0.00 36.97 5.73
4539 14917 4.410400 GGGAGCCAACCTGACCGG 62.410 72.222 0.00 0.00 39.35 5.28
4540 14918 4.760047 CGGGAGCCAACCTGACCG 62.760 72.222 0.00 0.00 38.49 4.79
4541 14919 3.319198 TCGGGAGCCAACCTGACC 61.319 66.667 0.00 0.00 40.00 4.02
4543 14921 3.319198 GGTCGGGAGCCAACCTGA 61.319 66.667 0.00 0.00 42.28 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.