Multiple sequence alignment - TraesCS6D01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G205800 chr6D 100.000 2405 0 0 1 2405 291782684 291785088 0.000000e+00 4442.0
1 TraesCS6D01G205800 chr6D 91.097 921 74 7 1489 2405 291795282 291796198 0.000000e+00 1240.0
2 TraesCS6D01G205800 chr6D 82.647 1020 138 27 591 1583 291794082 291795089 0.000000e+00 867.0
3 TraesCS6D01G205800 chr6D 86.275 306 37 5 257 558 291793794 291794098 6.410000e-86 327.0
4 TraesCS6D01G205800 chr6A 92.369 996 54 8 602 1583 431490762 431489775 0.000000e+00 1399.0
5 TraesCS6D01G205800 chr6A 88.877 953 100 6 1456 2405 431489758 431488809 0.000000e+00 1168.0
6 TraesCS6D01G205800 chr6A 87.777 949 100 11 1468 2405 431223266 431222323 0.000000e+00 1096.0
7 TraesCS6D01G205800 chr6A 80.306 1046 134 44 591 1583 431224392 431223366 0.000000e+00 725.0
8 TraesCS6D01G205800 chr6A 89.000 300 29 3 262 558 431491062 431490764 3.780000e-98 368.0
9 TraesCS6D01G205800 chr6A 93.023 86 6 0 473 558 431224461 431224376 2.510000e-25 126.0
10 TraesCS6D01G205800 chr6B 89.595 740 64 6 1677 2405 453156730 453157467 0.000000e+00 928.0
11 TraesCS6D01G205800 chr6B 79.678 994 143 33 592 1542 453276771 453277748 0.000000e+00 662.0
12 TraesCS6D01G205800 chr6B 79.412 986 140 32 592 1530 537315902 537316871 2.610000e-179 638.0
13 TraesCS6D01G205800 chr6B 90.210 429 36 4 857 1279 453117736 453118164 2.700000e-154 555.0
14 TraesCS6D01G205800 chr6B 91.429 280 16 6 260 533 453114548 453114825 6.280000e-101 377.0
15 TraesCS6D01G205800 chr6B 86.424 302 37 4 257 555 453276483 453276783 6.410000e-86 327.0
16 TraesCS6D01G205800 chr6B 86.424 302 37 4 257 555 537315614 537315914 6.410000e-86 327.0
17 TraesCS6D01G205800 chr6B 83.438 320 35 7 257 558 453247829 453248148 5.060000e-72 281.0
18 TraesCS6D01G205800 chr6B 83.125 320 36 7 257 558 537297459 537297778 2.360000e-70 276.0
19 TraesCS6D01G205800 chr6B 93.122 189 9 3 590 775 453115306 453115493 8.470000e-70 274.0
20 TraesCS6D01G205800 chr6B 83.936 249 22 10 590 826 453248132 453248374 3.110000e-54 222.0
21 TraesCS6D01G205800 chr6B 83.936 249 22 10 590 826 537297762 537298004 3.110000e-54 222.0
22 TraesCS6D01G205800 chr6B 82.488 217 28 10 1468 1679 453120253 453120464 5.280000e-42 182.0
23 TraesCS6D01G205800 chr6B 85.227 176 26 0 963 1138 537300337 537300512 5.280000e-42 182.0
24 TraesCS6D01G205800 chr6B 84.091 176 28 0 963 1138 453260771 453260946 1.140000e-38 171.0
25 TraesCS6D01G205800 chr6B 94.505 91 5 0 770 860 453117293 453117383 8.960000e-30 141.0
26 TraesCS6D01G205800 chr3B 80.420 761 127 14 830 1583 22370140 22370885 5.810000e-156 560.0
27 TraesCS6D01G205800 chr3B 80.263 760 131 13 854 1599 22207701 22208455 2.700000e-154 555.0
28 TraesCS6D01G205800 chr3B 81.185 287 39 9 271 551 22207121 22207398 1.450000e-52 217.0
29 TraesCS6D01G205800 chr3D 93.574 249 15 1 1 249 479240584 479240337 1.050000e-98 370.0
30 TraesCS6D01G205800 chr7D 93.852 244 15 0 1 244 491483694 491483451 3.780000e-98 368.0
31 TraesCS6D01G205800 chr7D 93.173 249 16 1 1 249 586466209 586465962 4.890000e-97 364.0
32 TraesCS6D01G205800 chr7D 78.512 484 93 8 1032 1506 2899250 2898769 8.350000e-80 307.0
33 TraesCS6D01G205800 chr4D 93.852 244 15 0 1 244 20966842 20967085 3.780000e-98 368.0
34 TraesCS6D01G205800 chr4D 93.548 248 15 1 1 248 55198312 55198066 3.780000e-98 368.0
35 TraesCS6D01G205800 chr4D 93.852 244 15 0 1 244 438589812 438589569 3.780000e-98 368.0
36 TraesCS6D01G205800 chr2D 92.885 253 16 2 1 253 340144293 340144043 1.360000e-97 366.0
37 TraesCS6D01G205800 chr2D 88.525 61 5 1 262 320 629971854 629971794 3.320000e-09 73.1
38 TraesCS6D01G205800 chr1D 93.145 248 16 1 1 248 281501518 281501764 1.760000e-96 363.0
39 TraesCS6D01G205800 chr5D 92.800 250 16 2 1 249 340533297 340533049 6.320000e-96 361.0
40 TraesCS6D01G205800 chrUn 83.936 249 22 10 590 826 478857084 478856842 3.110000e-54 222.0
41 TraesCS6D01G205800 chr4A 76.082 439 96 5 1032 1462 740447281 740446844 1.120000e-53 220.0
42 TraesCS6D01G205800 chr2B 88.235 68 8 0 401 468 772337423 772337356 5.510000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G205800 chr6D 291782684 291785088 2404 False 4442.000000 4442 100.000000 1 2405 1 chr6D.!!$F1 2404
1 TraesCS6D01G205800 chr6D 291793794 291796198 2404 False 811.333333 1240 86.673000 257 2405 3 chr6D.!!$F2 2148
2 TraesCS6D01G205800 chr6A 431488809 431491062 2253 True 978.333333 1399 90.082000 262 2405 3 chr6A.!!$R2 2143
3 TraesCS6D01G205800 chr6A 431222323 431224461 2138 True 649.000000 1096 87.035333 473 2405 3 chr6A.!!$R1 1932
4 TraesCS6D01G205800 chr6B 453156730 453157467 737 False 928.000000 928 89.595000 1677 2405 1 chr6B.!!$F1 728
5 TraesCS6D01G205800 chr6B 453276483 453277748 1265 False 494.500000 662 83.051000 257 1542 2 chr6B.!!$F5 1285
6 TraesCS6D01G205800 chr6B 537315614 537316871 1257 False 482.500000 638 82.918000 257 1530 2 chr6B.!!$F7 1273
7 TraesCS6D01G205800 chr6B 453114548 453120464 5916 False 305.800000 555 90.350800 260 1679 5 chr6B.!!$F3 1419
8 TraesCS6D01G205800 chr6B 453247829 453248374 545 False 251.500000 281 83.687000 257 826 2 chr6B.!!$F4 569
9 TraesCS6D01G205800 chr6B 537297459 537300512 3053 False 226.666667 276 84.096000 257 1138 3 chr6B.!!$F6 881
10 TraesCS6D01G205800 chr3B 22370140 22370885 745 False 560.000000 560 80.420000 830 1583 1 chr3B.!!$F1 753
11 TraesCS6D01G205800 chr3B 22207121 22208455 1334 False 386.000000 555 80.724000 271 1599 2 chr3B.!!$F2 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 5274 0.034756 TAGCACAAGCATCCACACGT 59.965 50.0 0.0 0.0 45.49 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 8852 2.383442 ACTGCGGTATAGATCCCAGT 57.617 50.0 0.0 0.0 34.3 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.468333 AGCATTGCCATATTTTGTCATACA 57.532 33.333 4.70 0.00 0.00 2.29
26 27 7.058023 AGCATTGCCATATTTTGTCATACAT 57.942 32.000 4.70 0.00 0.00 2.29
27 28 7.502696 AGCATTGCCATATTTTGTCATACATT 58.497 30.769 4.70 0.00 0.00 2.71
28 29 7.988599 AGCATTGCCATATTTTGTCATACATTT 59.011 29.630 4.70 0.00 0.00 2.32
29 30 8.614346 GCATTGCCATATTTTGTCATACATTTT 58.386 29.630 0.00 0.00 0.00 1.82
32 33 7.972527 TGCCATATTTTGTCATACATTTTTGC 58.027 30.769 0.00 0.00 0.00 3.68
33 34 7.065563 TGCCATATTTTGTCATACATTTTTGCC 59.934 33.333 0.00 0.00 0.00 4.52
34 35 7.065563 GCCATATTTTGTCATACATTTTTGCCA 59.934 33.333 0.00 0.00 0.00 4.92
35 36 8.944029 CCATATTTTGTCATACATTTTTGCCAA 58.056 29.630 0.00 0.00 0.00 4.52
36 37 9.757859 CATATTTTGTCATACATTTTTGCCAAC 57.242 29.630 0.00 0.00 0.00 3.77
37 38 6.610741 TTTTGTCATACATTTTTGCCAACC 57.389 33.333 0.00 0.00 0.00 3.77
38 39 5.543507 TTGTCATACATTTTTGCCAACCT 57.456 34.783 0.00 0.00 0.00 3.50
39 40 5.543507 TGTCATACATTTTTGCCAACCTT 57.456 34.783 0.00 0.00 0.00 3.50
40 41 5.295950 TGTCATACATTTTTGCCAACCTTG 58.704 37.500 0.00 0.00 0.00 3.61
41 42 5.163364 TGTCATACATTTTTGCCAACCTTGT 60.163 36.000 0.00 0.00 0.00 3.16
42 43 5.405269 GTCATACATTTTTGCCAACCTTGTC 59.595 40.000 0.00 0.00 0.00 3.18
43 44 5.304101 TCATACATTTTTGCCAACCTTGTCT 59.696 36.000 0.00 0.00 0.00 3.41
44 45 6.491745 TCATACATTTTTGCCAACCTTGTCTA 59.508 34.615 0.00 0.00 0.00 2.59
45 46 5.606348 ACATTTTTGCCAACCTTGTCTAA 57.394 34.783 0.00 0.00 0.00 2.10
46 47 5.600696 ACATTTTTGCCAACCTTGTCTAAG 58.399 37.500 0.00 0.00 0.00 2.18
47 48 3.726291 TTTTGCCAACCTTGTCTAAGC 57.274 42.857 0.00 0.00 32.40 3.09
48 49 2.656947 TTGCCAACCTTGTCTAAGCT 57.343 45.000 0.00 0.00 32.40 3.74
49 50 2.656947 TGCCAACCTTGTCTAAGCTT 57.343 45.000 3.48 3.48 32.40 3.74
50 51 3.780804 TGCCAACCTTGTCTAAGCTTA 57.219 42.857 5.94 5.94 32.40 3.09
51 52 3.674997 TGCCAACCTTGTCTAAGCTTAG 58.325 45.455 24.90 24.90 32.40 2.18
52 53 3.072476 TGCCAACCTTGTCTAAGCTTAGT 59.928 43.478 28.31 10.21 32.40 2.24
53 54 4.072839 GCCAACCTTGTCTAAGCTTAGTT 58.927 43.478 28.31 15.11 32.40 2.24
54 55 4.154375 GCCAACCTTGTCTAAGCTTAGTTC 59.846 45.833 28.31 22.32 32.40 3.01
55 56 5.305585 CCAACCTTGTCTAAGCTTAGTTCA 58.694 41.667 28.31 24.13 32.40 3.18
56 57 5.940470 CCAACCTTGTCTAAGCTTAGTTCAT 59.060 40.000 28.31 13.79 32.40 2.57
57 58 6.431234 CCAACCTTGTCTAAGCTTAGTTCATT 59.569 38.462 28.31 17.53 32.40 2.57
58 59 7.606456 CCAACCTTGTCTAAGCTTAGTTCATTA 59.394 37.037 28.31 15.38 32.40 1.90
59 60 8.999431 CAACCTTGTCTAAGCTTAGTTCATTAA 58.001 33.333 28.31 15.71 32.40 1.40
60 61 9.569122 AACCTTGTCTAAGCTTAGTTCATTAAA 57.431 29.630 28.31 14.58 32.40 1.52
61 62 9.569122 ACCTTGTCTAAGCTTAGTTCATTAAAA 57.431 29.630 28.31 11.86 32.40 1.52
68 69 9.928236 CTAAGCTTAGTTCATTAAAATGAGAGC 57.072 33.333 23.01 16.33 45.35 4.09
69 70 7.326968 AGCTTAGTTCATTAAAATGAGAGCC 57.673 36.000 18.38 6.98 45.35 4.70
70 71 6.886459 AGCTTAGTTCATTAAAATGAGAGCCA 59.114 34.615 18.38 1.54 45.35 4.75
71 72 6.969473 GCTTAGTTCATTAAAATGAGAGCCAC 59.031 38.462 5.60 1.89 45.35 5.01
72 73 7.362056 GCTTAGTTCATTAAAATGAGAGCCACA 60.362 37.037 5.60 0.00 45.35 4.17
73 74 6.899393 AGTTCATTAAAATGAGAGCCACAA 57.101 33.333 5.60 0.00 45.35 3.33
74 75 6.917533 AGTTCATTAAAATGAGAGCCACAAG 58.082 36.000 5.60 0.00 45.35 3.16
75 76 6.491403 AGTTCATTAAAATGAGAGCCACAAGT 59.509 34.615 5.60 0.00 45.35 3.16
76 77 6.899393 TCATTAAAATGAGAGCCACAAGTT 57.101 33.333 1.23 0.00 40.32 2.66
77 78 6.680810 TCATTAAAATGAGAGCCACAAGTTG 58.319 36.000 0.00 0.00 40.32 3.16
78 79 5.865552 CATTAAAATGAGAGCCACAAGTTGG 59.134 40.000 7.96 0.00 42.79 3.77
85 86 3.860681 CCACAAGTTGGCAAGCCT 58.139 55.556 12.96 0.00 39.07 4.58
86 87 3.034924 CCACAAGTTGGCAAGCCTA 57.965 52.632 12.96 1.22 39.07 3.93
87 88 1.327303 CCACAAGTTGGCAAGCCTAA 58.673 50.000 12.96 2.46 39.07 2.69
88 89 1.270550 CCACAAGTTGGCAAGCCTAAG 59.729 52.381 12.96 1.51 39.07 2.18
89 90 2.229792 CACAAGTTGGCAAGCCTAAGA 58.770 47.619 12.96 0.00 36.94 2.10
90 91 2.622942 CACAAGTTGGCAAGCCTAAGAA 59.377 45.455 12.96 0.00 36.94 2.52
91 92 3.068024 CACAAGTTGGCAAGCCTAAGAAA 59.932 43.478 12.96 0.00 36.94 2.52
92 93 3.704061 ACAAGTTGGCAAGCCTAAGAAAA 59.296 39.130 12.96 0.00 36.94 2.29
93 94 4.344968 ACAAGTTGGCAAGCCTAAGAAAAT 59.655 37.500 12.96 0.00 36.94 1.82
94 95 4.790765 AGTTGGCAAGCCTAAGAAAATC 57.209 40.909 12.96 0.00 36.94 2.17
95 96 4.411013 AGTTGGCAAGCCTAAGAAAATCT 58.589 39.130 12.96 0.00 36.94 2.40
96 97 4.835056 AGTTGGCAAGCCTAAGAAAATCTT 59.165 37.500 12.96 0.00 40.35 2.40
97 98 4.789012 TGGCAAGCCTAAGAAAATCTTG 57.211 40.909 12.96 0.00 37.29 3.02
98 99 4.151883 TGGCAAGCCTAAGAAAATCTTGT 58.848 39.130 12.96 0.00 37.29 3.16
99 100 4.218417 TGGCAAGCCTAAGAAAATCTTGTC 59.782 41.667 12.96 0.00 37.29 3.18
100 101 4.218417 GGCAAGCCTAAGAAAATCTTGTCA 59.782 41.667 3.29 0.00 38.72 3.58
101 102 5.157067 GCAAGCCTAAGAAAATCTTGTCAC 58.843 41.667 2.94 0.00 37.29 3.67
102 103 5.278463 GCAAGCCTAAGAAAATCTTGTCACA 60.278 40.000 2.94 0.00 37.29 3.58
103 104 5.948992 AGCCTAAGAAAATCTTGTCACAC 57.051 39.130 2.94 0.00 37.29 3.82
104 105 5.625150 AGCCTAAGAAAATCTTGTCACACT 58.375 37.500 2.94 0.00 37.29 3.55
105 106 6.064717 AGCCTAAGAAAATCTTGTCACACTT 58.935 36.000 2.94 0.00 37.29 3.16
106 107 6.547510 AGCCTAAGAAAATCTTGTCACACTTT 59.452 34.615 2.94 0.00 37.29 2.66
107 108 7.068716 AGCCTAAGAAAATCTTGTCACACTTTT 59.931 33.333 2.94 0.00 37.29 2.27
108 109 7.706607 GCCTAAGAAAATCTTGTCACACTTTTT 59.293 33.333 2.94 0.00 37.29 1.94
109 110 9.023967 CCTAAGAAAATCTTGTCACACTTTTTG 57.976 33.333 2.94 0.00 37.29 2.44
110 111 9.573133 CTAAGAAAATCTTGTCACACTTTTTGT 57.427 29.630 2.94 0.00 37.29 2.83
111 112 8.243289 AAGAAAATCTTGTCACACTTTTTGTG 57.757 30.769 0.00 0.00 45.09 3.33
112 113 7.872483 AAGAAAATCTTGTCACACTTTTTGTGT 59.128 29.630 4.41 0.00 46.85 3.72
125 126 6.148948 CACTTTTTGTGTGTATACCATGTGG 58.851 40.000 0.00 0.00 41.53 4.17
126 127 6.016693 CACTTTTTGTGTGTATACCATGTGGA 60.017 38.462 5.96 0.00 41.53 4.02
127 128 6.206634 ACTTTTTGTGTGTATACCATGTGGAG 59.793 38.462 5.96 0.00 38.94 3.86
128 129 3.260475 TGTGTGTATACCATGTGGAGC 57.740 47.619 5.96 0.00 38.94 4.70
129 130 2.837591 TGTGTGTATACCATGTGGAGCT 59.162 45.455 5.96 0.00 38.94 4.09
130 131 3.118775 TGTGTGTATACCATGTGGAGCTC 60.119 47.826 4.71 4.71 38.94 4.09
131 132 3.103742 TGTGTATACCATGTGGAGCTCA 58.896 45.455 17.19 0.00 38.94 4.26
132 133 3.517500 TGTGTATACCATGTGGAGCTCAA 59.482 43.478 17.19 0.00 38.94 3.02
133 134 4.122776 GTGTATACCATGTGGAGCTCAAG 58.877 47.826 17.19 0.00 38.94 3.02
134 135 3.774766 TGTATACCATGTGGAGCTCAAGT 59.225 43.478 17.19 0.58 38.94 3.16
135 136 2.768253 TACCATGTGGAGCTCAAGTG 57.232 50.000 17.19 6.25 38.94 3.16
136 137 0.767375 ACCATGTGGAGCTCAAGTGT 59.233 50.000 17.19 1.53 38.94 3.55
137 138 1.162698 CCATGTGGAGCTCAAGTGTG 58.837 55.000 17.19 7.17 37.39 3.82
138 139 1.162698 CATGTGGAGCTCAAGTGTGG 58.837 55.000 17.19 0.00 0.00 4.17
139 140 0.607489 ATGTGGAGCTCAAGTGTGGC 60.607 55.000 17.19 0.00 0.00 5.01
140 141 1.072159 GTGGAGCTCAAGTGTGGCT 59.928 57.895 17.19 0.00 34.97 4.75
141 142 0.536006 GTGGAGCTCAAGTGTGGCTT 60.536 55.000 17.19 0.00 38.08 4.35
142 143 1.055849 TGGAGCTCAAGTGTGGCTTA 58.944 50.000 17.19 0.00 35.27 3.09
143 144 1.270839 TGGAGCTCAAGTGTGGCTTAC 60.271 52.381 17.19 0.00 35.27 2.34
144 145 1.443802 GAGCTCAAGTGTGGCTTACC 58.556 55.000 9.40 0.00 35.27 2.85
145 146 1.002544 GAGCTCAAGTGTGGCTTACCT 59.997 52.381 9.40 0.00 35.27 3.08
146 147 2.233922 GAGCTCAAGTGTGGCTTACCTA 59.766 50.000 9.40 0.00 35.27 3.08
147 148 2.637872 AGCTCAAGTGTGGCTTACCTAA 59.362 45.455 0.00 0.00 35.27 2.69
148 149 3.003480 GCTCAAGTGTGGCTTACCTAAG 58.997 50.000 0.00 0.00 35.27 2.18
149 150 3.600388 CTCAAGTGTGGCTTACCTAAGG 58.400 50.000 0.00 0.00 35.27 2.69
150 151 2.976882 TCAAGTGTGGCTTACCTAAGGT 59.023 45.455 0.00 0.00 40.16 3.50
151 152 4.161876 TCAAGTGTGGCTTACCTAAGGTA 58.838 43.478 0.00 0.00 37.09 3.08
152 153 4.781087 TCAAGTGTGGCTTACCTAAGGTAT 59.219 41.667 0.00 0.00 38.05 2.73
153 154 4.755266 AGTGTGGCTTACCTAAGGTATG 57.245 45.455 0.00 0.00 38.05 2.39
154 155 4.359105 AGTGTGGCTTACCTAAGGTATGA 58.641 43.478 0.00 0.00 38.05 2.15
155 156 4.161754 AGTGTGGCTTACCTAAGGTATGAC 59.838 45.833 0.00 0.00 40.48 3.06
156 157 4.161754 GTGTGGCTTACCTAAGGTATGACT 59.838 45.833 0.00 0.00 40.64 3.41
157 158 4.781087 TGTGGCTTACCTAAGGTATGACTT 59.219 41.667 0.00 0.00 40.64 3.01
158 159 5.116882 GTGGCTTACCTAAGGTATGACTTG 58.883 45.833 0.00 0.00 40.64 3.16
159 160 5.027460 TGGCTTACCTAAGGTATGACTTGA 58.973 41.667 0.00 0.00 40.64 3.02
160 161 5.486063 TGGCTTACCTAAGGTATGACTTGAA 59.514 40.000 0.00 0.00 40.64 2.69
161 162 5.816258 GGCTTACCTAAGGTATGACTTGAAC 59.184 44.000 0.00 0.00 38.05 3.18
162 163 5.816258 GCTTACCTAAGGTATGACTTGAACC 59.184 44.000 0.00 0.00 38.05 3.62
163 164 6.575649 GCTTACCTAAGGTATGACTTGAACCA 60.576 42.308 0.00 0.00 38.05 3.67
164 165 5.836024 ACCTAAGGTATGACTTGAACCAA 57.164 39.130 0.00 0.00 35.64 3.67
165 166 6.195600 ACCTAAGGTATGACTTGAACCAAA 57.804 37.500 0.00 0.00 35.64 3.28
166 167 6.002082 ACCTAAGGTATGACTTGAACCAAAC 58.998 40.000 0.00 0.00 35.64 2.93
167 168 6.001460 CCTAAGGTATGACTTGAACCAAACA 58.999 40.000 0.00 0.00 35.64 2.83
168 169 5.767816 AAGGTATGACTTGAACCAAACAC 57.232 39.130 0.00 0.00 35.64 3.32
169 170 5.048846 AGGTATGACTTGAACCAAACACT 57.951 39.130 0.00 0.00 35.64 3.55
170 171 5.063880 AGGTATGACTTGAACCAAACACTC 58.936 41.667 0.00 0.00 35.64 3.51
171 172 4.819630 GGTATGACTTGAACCAAACACTCA 59.180 41.667 0.00 0.00 33.28 3.41
172 173 4.900635 ATGACTTGAACCAAACACTCAC 57.099 40.909 0.00 0.00 0.00 3.51
173 174 3.013921 TGACTTGAACCAAACACTCACC 58.986 45.455 0.00 0.00 0.00 4.02
174 175 3.279434 GACTTGAACCAAACACTCACCT 58.721 45.455 0.00 0.00 0.00 4.00
175 176 4.080807 TGACTTGAACCAAACACTCACCTA 60.081 41.667 0.00 0.00 0.00 3.08
176 177 4.850680 ACTTGAACCAAACACTCACCTAA 58.149 39.130 0.00 0.00 0.00 2.69
177 178 5.258051 ACTTGAACCAAACACTCACCTAAA 58.742 37.500 0.00 0.00 0.00 1.85
178 179 5.891551 ACTTGAACCAAACACTCACCTAAAT 59.108 36.000 0.00 0.00 0.00 1.40
179 180 6.379988 ACTTGAACCAAACACTCACCTAAATT 59.620 34.615 0.00 0.00 0.00 1.82
180 181 7.558444 ACTTGAACCAAACACTCACCTAAATTA 59.442 33.333 0.00 0.00 0.00 1.40
181 182 7.504924 TGAACCAAACACTCACCTAAATTAG 57.495 36.000 0.00 0.00 0.00 1.73
182 183 7.057894 TGAACCAAACACTCACCTAAATTAGT 58.942 34.615 0.00 0.00 0.00 2.24
183 184 7.227910 TGAACCAAACACTCACCTAAATTAGTC 59.772 37.037 0.00 0.00 0.00 2.59
184 185 6.838382 ACCAAACACTCACCTAAATTAGTCT 58.162 36.000 0.00 0.00 0.00 3.24
185 186 7.970102 ACCAAACACTCACCTAAATTAGTCTA 58.030 34.615 0.00 0.00 0.00 2.59
186 187 8.434392 ACCAAACACTCACCTAAATTAGTCTAA 58.566 33.333 0.00 0.00 0.00 2.10
187 188 8.718734 CCAAACACTCACCTAAATTAGTCTAAC 58.281 37.037 0.00 0.00 0.00 2.34
188 189 9.490379 CAAACACTCACCTAAATTAGTCTAACT 57.510 33.333 0.00 0.00 0.00 2.24
190 191 9.490379 AACACTCACCTAAATTAGTCTAACTTG 57.510 33.333 0.00 0.00 0.00 3.16
191 192 7.603024 ACACTCACCTAAATTAGTCTAACTTGC 59.397 37.037 0.00 0.00 0.00 4.01
192 193 7.064728 CACTCACCTAAATTAGTCTAACTTGCC 59.935 40.741 0.00 0.00 0.00 4.52
193 194 7.038231 ACTCACCTAAATTAGTCTAACTTGCCT 60.038 37.037 0.00 0.00 0.00 4.75
194 195 8.370266 TCACCTAAATTAGTCTAACTTGCCTA 57.630 34.615 0.00 0.00 0.00 3.93
195 196 8.818860 TCACCTAAATTAGTCTAACTTGCCTAA 58.181 33.333 0.00 0.00 0.00 2.69
196 197 8.880750 CACCTAAATTAGTCTAACTTGCCTAAC 58.119 37.037 0.00 0.00 0.00 2.34
197 198 8.045507 ACCTAAATTAGTCTAACTTGCCTAACC 58.954 37.037 0.00 0.00 0.00 2.85
198 199 8.265764 CCTAAATTAGTCTAACTTGCCTAACCT 58.734 37.037 0.00 0.00 0.00 3.50
199 200 9.668497 CTAAATTAGTCTAACTTGCCTAACCTT 57.332 33.333 0.00 0.00 0.00 3.50
201 202 9.668497 AAATTAGTCTAACTTGCCTAACCTTAG 57.332 33.333 0.00 0.00 0.00 2.18
202 203 8.605325 ATTAGTCTAACTTGCCTAACCTTAGA 57.395 34.615 0.00 0.00 32.47 2.10
203 204 8.605325 TTAGTCTAACTTGCCTAACCTTAGAT 57.395 34.615 0.00 0.00 32.47 1.98
204 205 6.879400 AGTCTAACTTGCCTAACCTTAGATG 58.121 40.000 0.00 0.00 32.47 2.90
205 206 6.440965 AGTCTAACTTGCCTAACCTTAGATGT 59.559 38.462 0.00 0.00 32.47 3.06
206 207 6.535508 GTCTAACTTGCCTAACCTTAGATGTG 59.464 42.308 0.00 0.00 32.47 3.21
207 208 4.222124 ACTTGCCTAACCTTAGATGTGG 57.778 45.455 0.00 0.00 32.47 4.17
208 209 2.710096 TGCCTAACCTTAGATGTGGC 57.290 50.000 0.00 0.00 39.33 5.01
209 210 1.912731 TGCCTAACCTTAGATGTGGCA 59.087 47.619 0.00 0.00 45.31 4.92
210 211 2.307392 TGCCTAACCTTAGATGTGGCAA 59.693 45.455 0.00 0.00 44.67 4.52
211 212 2.683362 GCCTAACCTTAGATGTGGCAAC 59.317 50.000 0.00 0.00 38.79 4.17
212 213 3.279434 CCTAACCTTAGATGTGGCAACC 58.721 50.000 0.00 0.00 32.47 3.77
213 214 3.054361 CCTAACCTTAGATGTGGCAACCT 60.054 47.826 0.00 0.00 32.47 3.50
214 215 3.525800 AACCTTAGATGTGGCAACCTT 57.474 42.857 0.00 0.00 0.00 3.50
215 216 3.525800 ACCTTAGATGTGGCAACCTTT 57.474 42.857 0.00 0.00 0.00 3.11
216 217 3.157087 ACCTTAGATGTGGCAACCTTTG 58.843 45.455 0.00 0.00 0.00 2.77
217 218 2.493278 CCTTAGATGTGGCAACCTTTGG 59.507 50.000 0.00 0.00 0.00 3.28
227 228 3.452755 GCAACCTTTGGCAAAGTTAGT 57.547 42.857 31.68 22.14 36.77 2.24
228 229 3.381045 GCAACCTTTGGCAAAGTTAGTC 58.619 45.455 31.68 16.47 36.77 2.59
229 230 3.181480 GCAACCTTTGGCAAAGTTAGTCA 60.181 43.478 31.68 1.65 36.77 3.41
230 231 4.359706 CAACCTTTGGCAAAGTTAGTCAC 58.640 43.478 31.68 0.00 36.77 3.67
231 232 3.626930 ACCTTTGGCAAAGTTAGTCACA 58.373 40.909 31.68 0.20 36.77 3.58
232 233 4.020543 ACCTTTGGCAAAGTTAGTCACAA 58.979 39.130 31.68 0.00 36.77 3.33
233 234 4.464597 ACCTTTGGCAAAGTTAGTCACAAA 59.535 37.500 31.68 0.00 36.77 2.83
234 235 4.803613 CCTTTGGCAAAGTTAGTCACAAAC 59.196 41.667 31.68 0.00 36.77 2.93
235 236 4.379339 TTGGCAAAGTTAGTCACAAACC 57.621 40.909 0.00 0.00 0.00 3.27
236 237 3.357203 TGGCAAAGTTAGTCACAAACCA 58.643 40.909 0.00 0.00 0.00 3.67
237 238 3.764434 TGGCAAAGTTAGTCACAAACCAA 59.236 39.130 0.00 0.00 0.00 3.67
238 239 4.220821 TGGCAAAGTTAGTCACAAACCAAA 59.779 37.500 0.00 0.00 0.00 3.28
239 240 4.565166 GGCAAAGTTAGTCACAAACCAAAC 59.435 41.667 0.00 0.00 0.00 2.93
240 241 5.164954 GCAAAGTTAGTCACAAACCAAACA 58.835 37.500 0.00 0.00 30.35 2.83
241 242 5.288472 GCAAAGTTAGTCACAAACCAAACAG 59.712 40.000 0.00 0.00 30.35 3.16
242 243 4.632538 AGTTAGTCACAAACCAAACAGC 57.367 40.909 0.00 0.00 30.35 4.40
243 244 3.380320 AGTTAGTCACAAACCAAACAGCC 59.620 43.478 0.00 0.00 30.35 4.85
244 245 2.143876 AGTCACAAACCAAACAGCCT 57.856 45.000 0.00 0.00 0.00 4.58
245 246 2.024414 AGTCACAAACCAAACAGCCTC 58.976 47.619 0.00 0.00 0.00 4.70
246 247 1.067060 GTCACAAACCAAACAGCCTCC 59.933 52.381 0.00 0.00 0.00 4.30
247 248 1.064017 TCACAAACCAAACAGCCTCCT 60.064 47.619 0.00 0.00 0.00 3.69
248 249 2.173782 TCACAAACCAAACAGCCTCCTA 59.826 45.455 0.00 0.00 0.00 2.94
249 250 2.554032 CACAAACCAAACAGCCTCCTAG 59.446 50.000 0.00 0.00 0.00 3.02
250 251 2.441750 ACAAACCAAACAGCCTCCTAGA 59.558 45.455 0.00 0.00 0.00 2.43
251 252 3.117663 ACAAACCAAACAGCCTCCTAGAA 60.118 43.478 0.00 0.00 0.00 2.10
252 253 4.082125 CAAACCAAACAGCCTCCTAGAAT 58.918 43.478 0.00 0.00 0.00 2.40
253 254 3.636153 ACCAAACAGCCTCCTAGAATC 57.364 47.619 0.00 0.00 0.00 2.52
254 255 2.093447 ACCAAACAGCCTCCTAGAATCG 60.093 50.000 0.00 0.00 0.00 3.34
255 256 2.168521 CCAAACAGCCTCCTAGAATCGA 59.831 50.000 0.00 0.00 0.00 3.59
256 257 3.369471 CCAAACAGCCTCCTAGAATCGAA 60.369 47.826 0.00 0.00 0.00 3.71
257 258 3.528597 AACAGCCTCCTAGAATCGAAC 57.471 47.619 0.00 0.00 0.00 3.95
258 259 1.757699 ACAGCCTCCTAGAATCGAACC 59.242 52.381 0.00 0.00 0.00 3.62
269 270 2.167693 AGAATCGAACCATAACCGCTCA 59.832 45.455 0.00 0.00 0.00 4.26
342 343 0.103937 GCGGAAGATCTCTGTCAGGG 59.896 60.000 0.00 0.00 32.37 4.45
361 377 3.708121 AGGGTCCGGTCGAAAAGTATATT 59.292 43.478 0.00 0.00 0.00 1.28
380 396 0.911769 TGGCTGGACAATGGGTAGAG 59.088 55.000 0.00 0.00 0.00 2.43
432 451 2.426738 CAACCTTGTCCAGCTCAAACAA 59.573 45.455 5.30 5.30 0.00 2.83
441 460 2.033299 CCAGCTCAAACAACGACAACAT 59.967 45.455 0.00 0.00 0.00 2.71
482 507 5.905733 GTGAAAAGTAGCGTTTACTGGAAAC 59.094 40.000 5.39 5.39 43.51 2.78
544 1048 5.066505 AGCTAAGATAAGGCGTTGGAATTTG 59.933 40.000 0.97 0.00 0.00 2.32
545 1049 5.065988 GCTAAGATAAGGCGTTGGAATTTGA 59.934 40.000 0.97 0.00 0.00 2.69
546 1050 5.567138 AAGATAAGGCGTTGGAATTTGAG 57.433 39.130 0.97 0.00 0.00 3.02
547 1051 3.947834 AGATAAGGCGTTGGAATTTGAGG 59.052 43.478 0.97 0.00 0.00 3.86
548 1052 1.995376 AAGGCGTTGGAATTTGAGGT 58.005 45.000 0.00 0.00 0.00 3.85
549 1053 1.247567 AGGCGTTGGAATTTGAGGTG 58.752 50.000 0.00 0.00 0.00 4.00
550 1054 1.202879 AGGCGTTGGAATTTGAGGTGA 60.203 47.619 0.00 0.00 0.00 4.02
551 1055 1.200020 GGCGTTGGAATTTGAGGTGAG 59.800 52.381 0.00 0.00 0.00 3.51
552 1056 2.151202 GCGTTGGAATTTGAGGTGAGA 58.849 47.619 0.00 0.00 0.00 3.27
553 1057 2.749621 GCGTTGGAATTTGAGGTGAGAT 59.250 45.455 0.00 0.00 0.00 2.75
554 1058 3.426695 GCGTTGGAATTTGAGGTGAGATG 60.427 47.826 0.00 0.00 0.00 2.90
555 1059 3.426695 CGTTGGAATTTGAGGTGAGATGC 60.427 47.826 0.00 0.00 0.00 3.91
556 1060 3.438216 TGGAATTTGAGGTGAGATGCA 57.562 42.857 0.00 0.00 0.00 3.96
557 1061 3.972133 TGGAATTTGAGGTGAGATGCAT 58.028 40.909 0.00 0.00 0.00 3.96
558 1062 4.346730 TGGAATTTGAGGTGAGATGCATT 58.653 39.130 0.00 0.00 0.00 3.56
559 1063 4.773674 TGGAATTTGAGGTGAGATGCATTT 59.226 37.500 0.00 0.00 0.00 2.32
560 1064 5.246656 TGGAATTTGAGGTGAGATGCATTTT 59.753 36.000 0.00 0.00 0.00 1.82
561 1065 6.168389 GGAATTTGAGGTGAGATGCATTTTT 58.832 36.000 0.00 0.00 0.00 1.94
589 1093 9.598517 TTTTTGAGACAAGTTAGATGCATTTTT 57.401 25.926 0.00 0.00 0.00 1.94
747 1286 2.097038 CGCTTGTTCTGCTCTCCGG 61.097 63.158 0.00 0.00 0.00 5.14
748 1287 1.293498 GCTTGTTCTGCTCTCCGGA 59.707 57.895 2.93 2.93 0.00 5.14
753 1292 0.109039 GTTCTGCTCTCCGGACAGAC 60.109 60.000 19.77 12.65 40.03 3.51
876 5274 0.034756 TAGCACAAGCATCCACACGT 59.965 50.000 0.00 0.00 45.49 4.49
885 5288 1.737236 GCATCCACACGTATTGCTTGA 59.263 47.619 0.00 0.00 0.00 3.02
898 5302 2.052782 TGCTTGATCATGCTGCTCAT 57.947 45.000 27.81 0.00 35.31 2.90
939 5561 3.457234 TCCGCTAGTTAACATGCAGATG 58.543 45.455 18.36 0.00 35.49 2.90
960 5582 5.432885 TGCAATTCATAGCATCATGTCAG 57.567 39.130 0.00 0.00 35.51 3.51
989 5611 8.188139 AGTTTATGATTTACATTTTGTAGGCGG 58.812 33.333 0.00 0.00 40.07 6.13
1066 5693 1.356624 GCGTTGCTGCTGTTCTGTT 59.643 52.632 0.00 0.00 0.00 3.16
1074 5701 2.675348 GCTGCTGTTCTGTTATGGAGTC 59.325 50.000 0.00 0.00 0.00 3.36
1418 7889 7.329226 ACACTTTCTCTGAACAACAACAATTTG 59.671 33.333 0.00 0.00 38.83 2.32
1687 8446 5.432885 TTGCTAAGTTTACAAGTCTTGCC 57.567 39.130 12.66 0.00 0.00 4.52
1742 8507 4.441079 CCACATTCCATCTTGAATCTTGCC 60.441 45.833 0.00 0.00 32.71 4.52
1744 8509 2.042686 TCCATCTTGAATCTTGCCGG 57.957 50.000 0.00 0.00 0.00 6.13
1783 8548 3.969976 AGCTTGGAGGTGAATATGCTAGA 59.030 43.478 0.00 0.00 0.00 2.43
1834 8599 3.527507 TCGGGGTCTCATAGAGCTTAT 57.472 47.619 6.13 0.00 42.10 1.73
1861 8626 1.147473 GGCAACATTTTTGAAGGGCG 58.853 50.000 0.00 0.00 0.00 6.13
1937 8702 6.698766 CAGCTAATAATTTCACTGGGCAAATC 59.301 38.462 0.00 0.00 0.00 2.17
1952 8717 3.633986 GGCAAATCCCTAACATCTTCTGG 59.366 47.826 0.00 0.00 0.00 3.86
2006 8771 4.243007 ACATAACCAGCTTGAAACAAGC 57.757 40.909 23.31 23.31 43.31 4.01
2251 9025 3.282021 GCACAATAGAAGGATGGCTTGA 58.718 45.455 0.00 0.00 0.00 3.02
2332 9107 5.544176 TCCCACCCTCTATTAGCAATCTTAG 59.456 44.000 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.065563 TGGCAAAAATGTATGACAAAATATGGC 59.934 33.333 0.00 0.00 37.68 4.40
9 10 8.489990 TGGCAAAAATGTATGACAAAATATGG 57.510 30.769 0.00 0.00 29.85 2.74
10 11 9.757859 GTTGGCAAAAATGTATGACAAAATATG 57.242 29.630 0.00 0.00 45.57 1.78
11 12 8.945057 GGTTGGCAAAAATGTATGACAAAATAT 58.055 29.630 0.00 0.00 45.57 1.28
12 13 8.153550 AGGTTGGCAAAAATGTATGACAAAATA 58.846 29.630 0.00 0.00 45.57 1.40
13 14 6.997476 AGGTTGGCAAAAATGTATGACAAAAT 59.003 30.769 0.00 0.00 45.57 1.82
14 15 6.352516 AGGTTGGCAAAAATGTATGACAAAA 58.647 32.000 0.00 0.00 45.57 2.44
15 16 5.923204 AGGTTGGCAAAAATGTATGACAAA 58.077 33.333 0.00 0.00 45.57 2.83
16 17 5.543507 AGGTTGGCAAAAATGTATGACAA 57.456 34.783 0.00 0.00 42.10 3.18
17 18 5.163364 ACAAGGTTGGCAAAAATGTATGACA 60.163 36.000 0.00 0.00 31.24 3.58
18 19 5.296748 ACAAGGTTGGCAAAAATGTATGAC 58.703 37.500 0.00 0.00 0.00 3.06
19 20 5.304101 AGACAAGGTTGGCAAAAATGTATGA 59.696 36.000 0.00 0.00 39.18 2.15
20 21 5.540911 AGACAAGGTTGGCAAAAATGTATG 58.459 37.500 0.00 0.00 39.18 2.39
21 22 5.806654 AGACAAGGTTGGCAAAAATGTAT 57.193 34.783 0.00 1.61 39.18 2.29
22 23 6.716934 TTAGACAAGGTTGGCAAAAATGTA 57.283 33.333 0.00 0.00 39.18 2.29
23 24 5.600696 CTTAGACAAGGTTGGCAAAAATGT 58.399 37.500 0.00 7.13 39.18 2.71
24 25 4.448732 GCTTAGACAAGGTTGGCAAAAATG 59.551 41.667 0.00 3.62 39.18 2.32
25 26 4.344968 AGCTTAGACAAGGTTGGCAAAAAT 59.655 37.500 0.00 0.00 39.45 1.82
26 27 3.704061 AGCTTAGACAAGGTTGGCAAAAA 59.296 39.130 0.00 0.00 39.45 1.94
27 28 3.295973 AGCTTAGACAAGGTTGGCAAAA 58.704 40.909 0.00 0.00 39.45 2.44
28 29 2.944129 AGCTTAGACAAGGTTGGCAAA 58.056 42.857 0.00 0.00 39.45 3.68
29 30 2.656947 AGCTTAGACAAGGTTGGCAA 57.343 45.000 0.00 0.00 39.45 4.52
35 36 9.569122 TTTTAATGAACTAAGCTTAGACAAGGT 57.431 29.630 34.65 22.64 44.28 3.50
42 43 9.928236 GCTCTCATTTTAATGAACTAAGCTTAG 57.072 33.333 28.16 28.16 44.20 2.18
43 44 8.893727 GGCTCTCATTTTAATGAACTAAGCTTA 58.106 33.333 5.94 5.94 44.20 3.09
44 45 7.394359 TGGCTCTCATTTTAATGAACTAAGCTT 59.606 33.333 3.48 3.48 44.20 3.74
45 46 6.886459 TGGCTCTCATTTTAATGAACTAAGCT 59.114 34.615 18.17 0.00 44.20 3.74
46 47 6.969473 GTGGCTCTCATTTTAATGAACTAAGC 59.031 38.462 6.61 11.29 44.20 3.09
47 48 8.044060 TGTGGCTCTCATTTTAATGAACTAAG 57.956 34.615 6.61 3.99 44.20 2.18
48 49 7.994425 TGTGGCTCTCATTTTAATGAACTAA 57.006 32.000 6.61 0.00 44.20 2.24
49 50 7.665559 ACTTGTGGCTCTCATTTTAATGAACTA 59.334 33.333 6.61 0.00 44.20 2.24
50 51 6.491403 ACTTGTGGCTCTCATTTTAATGAACT 59.509 34.615 6.61 0.00 44.20 3.01
51 52 6.681777 ACTTGTGGCTCTCATTTTAATGAAC 58.318 36.000 6.61 2.87 44.20 3.18
52 53 6.899393 ACTTGTGGCTCTCATTTTAATGAA 57.101 33.333 6.61 0.00 44.20 2.57
53 54 6.294675 CCAACTTGTGGCTCTCATTTTAATGA 60.295 38.462 5.16 5.16 41.72 2.57
54 55 5.865552 CCAACTTGTGGCTCTCATTTTAATG 59.134 40.000 0.00 0.00 41.72 1.90
55 56 6.029346 CCAACTTGTGGCTCTCATTTTAAT 57.971 37.500 0.00 0.00 41.72 1.40
56 57 5.452078 CCAACTTGTGGCTCTCATTTTAA 57.548 39.130 0.00 0.00 41.72 1.52
69 70 2.229792 TCTTAGGCTTGCCAACTTGTG 58.770 47.619 14.54 0.00 0.00 3.33
70 71 2.656947 TCTTAGGCTTGCCAACTTGT 57.343 45.000 14.54 0.00 0.00 3.16
71 72 4.320608 TTTTCTTAGGCTTGCCAACTTG 57.679 40.909 14.54 0.00 0.00 3.16
72 73 4.835056 AGATTTTCTTAGGCTTGCCAACTT 59.165 37.500 14.54 0.00 0.00 2.66
73 74 4.411013 AGATTTTCTTAGGCTTGCCAACT 58.589 39.130 14.54 0.00 0.00 3.16
74 75 4.790765 AGATTTTCTTAGGCTTGCCAAC 57.209 40.909 14.54 0.00 0.00 3.77
75 76 4.588528 ACAAGATTTTCTTAGGCTTGCCAA 59.411 37.500 14.54 5.54 39.51 4.52
76 77 4.151883 ACAAGATTTTCTTAGGCTTGCCA 58.848 39.130 14.54 0.00 39.51 4.92
77 78 4.218417 TGACAAGATTTTCTTAGGCTTGCC 59.782 41.667 2.97 2.97 39.51 4.52
78 79 5.157067 GTGACAAGATTTTCTTAGGCTTGC 58.843 41.667 0.00 0.00 39.51 4.01
79 80 6.016777 AGTGTGACAAGATTTTCTTAGGCTTG 60.017 38.462 0.00 0.00 41.15 4.01
80 81 6.064717 AGTGTGACAAGATTTTCTTAGGCTT 58.935 36.000 0.00 0.00 33.78 4.35
81 82 5.625150 AGTGTGACAAGATTTTCTTAGGCT 58.375 37.500 0.00 0.00 33.78 4.58
82 83 5.948992 AGTGTGACAAGATTTTCTTAGGC 57.051 39.130 0.00 0.00 33.78 3.93
83 84 9.023967 CAAAAAGTGTGACAAGATTTTCTTAGG 57.976 33.333 5.31 0.00 33.78 2.69
84 85 9.573133 ACAAAAAGTGTGACAAGATTTTCTTAG 57.427 29.630 5.31 0.00 39.72 2.18
101 102 6.016693 TCCACATGGTATACACACAAAAAGTG 60.017 38.462 5.01 0.00 44.35 3.16
102 103 6.065374 TCCACATGGTATACACACAAAAAGT 58.935 36.000 5.01 0.00 36.34 2.66
103 104 6.567687 TCCACATGGTATACACACAAAAAG 57.432 37.500 5.01 0.00 36.34 2.27
104 105 5.048364 GCTCCACATGGTATACACACAAAAA 60.048 40.000 5.01 0.00 36.34 1.94
105 106 4.457603 GCTCCACATGGTATACACACAAAA 59.542 41.667 5.01 0.00 36.34 2.44
106 107 4.006989 GCTCCACATGGTATACACACAAA 58.993 43.478 5.01 0.00 36.34 2.83
107 108 3.263170 AGCTCCACATGGTATACACACAA 59.737 43.478 5.01 0.00 36.34 3.33
108 109 2.837591 AGCTCCACATGGTATACACACA 59.162 45.455 5.01 0.00 36.34 3.72
109 110 3.118775 TGAGCTCCACATGGTATACACAC 60.119 47.826 12.15 0.00 36.34 3.82
110 111 3.103742 TGAGCTCCACATGGTATACACA 58.896 45.455 12.15 0.90 36.34 3.72
111 112 3.819564 TGAGCTCCACATGGTATACAC 57.180 47.619 12.15 0.00 36.34 2.90
112 113 3.774766 ACTTGAGCTCCACATGGTATACA 59.225 43.478 12.15 0.00 36.34 2.29
113 114 4.122776 CACTTGAGCTCCACATGGTATAC 58.877 47.826 12.15 0.00 36.34 1.47
114 115 3.774766 ACACTTGAGCTCCACATGGTATA 59.225 43.478 12.15 0.00 36.34 1.47
115 116 2.573462 ACACTTGAGCTCCACATGGTAT 59.427 45.455 12.15 0.00 36.34 2.73
116 117 1.977854 ACACTTGAGCTCCACATGGTA 59.022 47.619 12.15 0.00 36.34 3.25
117 118 0.767375 ACACTTGAGCTCCACATGGT 59.233 50.000 12.15 0.00 36.34 3.55
118 119 1.162698 CACACTTGAGCTCCACATGG 58.837 55.000 12.15 0.00 0.00 3.66
119 120 1.162698 CCACACTTGAGCTCCACATG 58.837 55.000 12.15 7.02 0.00 3.21
120 121 0.607489 GCCACACTTGAGCTCCACAT 60.607 55.000 12.15 0.00 0.00 3.21
121 122 1.227943 GCCACACTTGAGCTCCACA 60.228 57.895 12.15 0.00 0.00 4.17
122 123 0.536006 AAGCCACACTTGAGCTCCAC 60.536 55.000 12.15 0.00 37.17 4.02
123 124 1.055849 TAAGCCACACTTGAGCTCCA 58.944 50.000 12.15 0.00 39.58 3.86
124 125 1.443802 GTAAGCCACACTTGAGCTCC 58.556 55.000 12.15 0.00 39.58 4.70
125 126 1.002544 AGGTAAGCCACACTTGAGCTC 59.997 52.381 6.82 6.82 39.58 4.09
126 127 1.059913 AGGTAAGCCACACTTGAGCT 58.940 50.000 0.00 0.00 39.58 4.09
127 128 2.762535 TAGGTAAGCCACACTTGAGC 57.237 50.000 0.00 0.00 39.58 4.26
128 129 3.008049 ACCTTAGGTAAGCCACACTTGAG 59.992 47.826 0.15 0.00 39.58 3.02
129 130 2.976882 ACCTTAGGTAAGCCACACTTGA 59.023 45.455 0.15 0.00 39.58 3.02
130 131 3.418684 ACCTTAGGTAAGCCACACTTG 57.581 47.619 0.15 0.00 39.58 3.16
131 132 4.781087 TCATACCTTAGGTAAGCCACACTT 59.219 41.667 15.69 0.00 41.85 3.16
132 133 4.161754 GTCATACCTTAGGTAAGCCACACT 59.838 45.833 15.69 0.00 41.85 3.55
133 134 4.161754 AGTCATACCTTAGGTAAGCCACAC 59.838 45.833 15.69 5.31 41.85 3.82
134 135 4.359105 AGTCATACCTTAGGTAAGCCACA 58.641 43.478 15.69 0.00 41.85 4.17
135 136 5.105064 TCAAGTCATACCTTAGGTAAGCCAC 60.105 44.000 15.69 9.26 41.85 5.01
136 137 5.027460 TCAAGTCATACCTTAGGTAAGCCA 58.973 41.667 15.69 0.00 41.85 4.75
137 138 5.609533 TCAAGTCATACCTTAGGTAAGCC 57.390 43.478 15.69 0.39 41.85 4.35
138 139 5.816258 GGTTCAAGTCATACCTTAGGTAAGC 59.184 44.000 15.69 8.41 41.85 3.09
139 140 6.942976 TGGTTCAAGTCATACCTTAGGTAAG 58.057 40.000 15.69 11.27 41.85 2.34
140 141 6.938698 TGGTTCAAGTCATACCTTAGGTAA 57.061 37.500 15.69 0.00 41.85 2.85
141 142 6.938698 TTGGTTCAAGTCATACCTTAGGTA 57.061 37.500 14.04 14.04 42.80 3.08
142 143 5.836024 TTGGTTCAAGTCATACCTTAGGT 57.164 39.130 9.57 9.57 40.16 3.08
143 144 6.001460 TGTTTGGTTCAAGTCATACCTTAGG 58.999 40.000 0.00 0.00 33.05 2.69
144 145 6.710744 AGTGTTTGGTTCAAGTCATACCTTAG 59.289 38.462 0.00 0.00 33.05 2.18
145 146 6.597562 AGTGTTTGGTTCAAGTCATACCTTA 58.402 36.000 0.00 0.00 33.05 2.69
146 147 5.445964 AGTGTTTGGTTCAAGTCATACCTT 58.554 37.500 0.00 0.00 33.05 3.50
147 148 5.048846 AGTGTTTGGTTCAAGTCATACCT 57.951 39.130 0.00 0.00 33.05 3.08
148 149 4.819630 TGAGTGTTTGGTTCAAGTCATACC 59.180 41.667 0.00 0.00 0.00 2.73
149 150 5.277828 GGTGAGTGTTTGGTTCAAGTCATAC 60.278 44.000 0.00 0.00 0.00 2.39
150 151 4.819630 GGTGAGTGTTTGGTTCAAGTCATA 59.180 41.667 0.00 0.00 0.00 2.15
151 152 3.632145 GGTGAGTGTTTGGTTCAAGTCAT 59.368 43.478 0.00 0.00 0.00 3.06
152 153 3.013921 GGTGAGTGTTTGGTTCAAGTCA 58.986 45.455 0.00 0.00 0.00 3.41
153 154 3.279434 AGGTGAGTGTTTGGTTCAAGTC 58.721 45.455 0.00 0.00 0.00 3.01
154 155 3.366052 AGGTGAGTGTTTGGTTCAAGT 57.634 42.857 0.00 0.00 0.00 3.16
155 156 5.828299 TTTAGGTGAGTGTTTGGTTCAAG 57.172 39.130 0.00 0.00 0.00 3.02
156 157 6.783708 AATTTAGGTGAGTGTTTGGTTCAA 57.216 33.333 0.00 0.00 0.00 2.69
157 158 7.057894 ACTAATTTAGGTGAGTGTTTGGTTCA 58.942 34.615 8.26 0.00 0.00 3.18
158 159 7.444487 AGACTAATTTAGGTGAGTGTTTGGTTC 59.556 37.037 8.26 0.00 0.00 3.62
159 160 7.287810 AGACTAATTTAGGTGAGTGTTTGGTT 58.712 34.615 8.26 0.00 0.00 3.67
160 161 6.838382 AGACTAATTTAGGTGAGTGTTTGGT 58.162 36.000 8.26 0.00 0.00 3.67
161 162 8.718734 GTTAGACTAATTTAGGTGAGTGTTTGG 58.281 37.037 8.26 0.00 0.00 3.28
162 163 9.490379 AGTTAGACTAATTTAGGTGAGTGTTTG 57.510 33.333 8.26 0.00 0.00 2.93
164 165 9.490379 CAAGTTAGACTAATTTAGGTGAGTGTT 57.510 33.333 8.26 0.00 0.00 3.32
165 166 7.603024 GCAAGTTAGACTAATTTAGGTGAGTGT 59.397 37.037 8.26 0.00 0.00 3.55
166 167 7.064728 GGCAAGTTAGACTAATTTAGGTGAGTG 59.935 40.741 8.26 0.00 0.00 3.51
167 168 7.038231 AGGCAAGTTAGACTAATTTAGGTGAGT 60.038 37.037 8.26 0.00 0.00 3.41
168 169 7.331791 AGGCAAGTTAGACTAATTTAGGTGAG 58.668 38.462 8.26 0.00 0.00 3.51
169 170 7.253905 AGGCAAGTTAGACTAATTTAGGTGA 57.746 36.000 8.26 0.00 0.00 4.02
170 171 8.880750 GTTAGGCAAGTTAGACTAATTTAGGTG 58.119 37.037 8.26 0.00 40.95 4.00
171 172 8.045507 GGTTAGGCAAGTTAGACTAATTTAGGT 58.954 37.037 8.26 0.00 40.95 3.08
172 173 8.265764 AGGTTAGGCAAGTTAGACTAATTTAGG 58.734 37.037 8.26 0.00 40.95 2.69
173 174 9.668497 AAGGTTAGGCAAGTTAGACTAATTTAG 57.332 33.333 2.95 1.79 40.95 1.85
175 176 9.668497 CTAAGGTTAGGCAAGTTAGACTAATTT 57.332 33.333 0.00 0.00 40.95 1.82
176 177 9.043548 TCTAAGGTTAGGCAAGTTAGACTAATT 57.956 33.333 0.00 0.00 40.95 1.40
177 178 8.605325 TCTAAGGTTAGGCAAGTTAGACTAAT 57.395 34.615 0.00 0.00 40.95 1.73
178 179 8.475639 CATCTAAGGTTAGGCAAGTTAGACTAA 58.524 37.037 0.00 0.00 36.78 2.24
179 180 7.618512 ACATCTAAGGTTAGGCAAGTTAGACTA 59.381 37.037 0.00 0.00 33.64 2.59
180 181 6.440965 ACATCTAAGGTTAGGCAAGTTAGACT 59.559 38.462 0.00 0.00 33.64 3.24
181 182 6.535508 CACATCTAAGGTTAGGCAAGTTAGAC 59.464 42.308 0.00 0.00 33.64 2.59
182 183 6.351881 CCACATCTAAGGTTAGGCAAGTTAGA 60.352 42.308 0.00 0.00 34.94 2.10
183 184 5.817816 CCACATCTAAGGTTAGGCAAGTTAG 59.182 44.000 0.00 0.00 0.00 2.34
184 185 5.741011 CCACATCTAAGGTTAGGCAAGTTA 58.259 41.667 0.00 0.00 0.00 2.24
185 186 4.589908 CCACATCTAAGGTTAGGCAAGTT 58.410 43.478 0.00 0.00 0.00 2.66
186 187 3.622455 GCCACATCTAAGGTTAGGCAAGT 60.622 47.826 0.00 0.00 40.29 3.16
187 188 2.945668 GCCACATCTAAGGTTAGGCAAG 59.054 50.000 0.00 0.00 40.29 4.01
188 189 2.307392 TGCCACATCTAAGGTTAGGCAA 59.693 45.455 0.00 0.00 46.55 4.52
189 190 2.710096 GCCACATCTAAGGTTAGGCA 57.290 50.000 0.00 0.00 40.29 4.75
190 191 2.683362 GTTGCCACATCTAAGGTTAGGC 59.317 50.000 0.00 0.00 40.93 3.93
191 192 3.054361 AGGTTGCCACATCTAAGGTTAGG 60.054 47.826 0.00 0.00 0.00 2.69
192 193 4.222124 AGGTTGCCACATCTAAGGTTAG 57.778 45.455 0.00 0.00 0.00 2.34
193 194 4.650972 AAGGTTGCCACATCTAAGGTTA 57.349 40.909 0.00 0.00 0.00 2.85
194 195 3.525800 AAGGTTGCCACATCTAAGGTT 57.474 42.857 0.00 0.00 0.00 3.50
195 196 3.157087 CAAAGGTTGCCACATCTAAGGT 58.843 45.455 0.00 0.00 0.00 3.50
196 197 2.493278 CCAAAGGTTGCCACATCTAAGG 59.507 50.000 0.00 0.00 0.00 2.69
197 198 2.094545 GCCAAAGGTTGCCACATCTAAG 60.095 50.000 0.00 0.00 0.00 2.18
198 199 1.892474 GCCAAAGGTTGCCACATCTAA 59.108 47.619 0.00 0.00 0.00 2.10
199 200 1.202989 TGCCAAAGGTTGCCACATCTA 60.203 47.619 0.00 0.00 0.00 1.98
200 201 0.469705 TGCCAAAGGTTGCCACATCT 60.470 50.000 0.00 0.00 0.00 2.90
201 202 0.392336 TTGCCAAAGGTTGCCACATC 59.608 50.000 0.00 0.00 0.00 3.06
202 203 0.835941 TTTGCCAAAGGTTGCCACAT 59.164 45.000 0.00 0.00 0.00 3.21
203 204 0.177604 CTTTGCCAAAGGTTGCCACA 59.822 50.000 9.37 0.00 34.85 4.17
204 205 0.177836 ACTTTGCCAAAGGTTGCCAC 59.822 50.000 20.55 0.00 42.82 5.01
205 206 0.908198 AACTTTGCCAAAGGTTGCCA 59.092 45.000 20.55 0.00 42.82 4.92
206 207 2.102420 ACTAACTTTGCCAAAGGTTGCC 59.898 45.455 20.55 0.00 42.82 4.52
207 208 3.181480 TGACTAACTTTGCCAAAGGTTGC 60.181 43.478 20.55 11.68 42.82 4.17
208 209 4.142271 TGTGACTAACTTTGCCAAAGGTTG 60.142 41.667 20.55 17.14 42.82 3.77
209 210 4.020543 TGTGACTAACTTTGCCAAAGGTT 58.979 39.130 20.55 13.99 42.82 3.50
210 211 3.626930 TGTGACTAACTTTGCCAAAGGT 58.373 40.909 20.55 17.05 42.82 3.50
211 212 4.647424 TTGTGACTAACTTTGCCAAAGG 57.353 40.909 20.55 6.29 42.82 3.11
212 213 4.803613 GGTTTGTGACTAACTTTGCCAAAG 59.196 41.667 15.47 15.47 44.10 2.77
213 214 4.220821 TGGTTTGTGACTAACTTTGCCAAA 59.779 37.500 9.55 0.00 0.00 3.28
214 215 3.764434 TGGTTTGTGACTAACTTTGCCAA 59.236 39.130 9.55 0.00 0.00 4.52
215 216 3.357203 TGGTTTGTGACTAACTTTGCCA 58.643 40.909 9.55 0.00 0.00 4.92
216 217 4.379339 TTGGTTTGTGACTAACTTTGCC 57.621 40.909 9.55 0.00 0.00 4.52
217 218 5.164954 TGTTTGGTTTGTGACTAACTTTGC 58.835 37.500 9.55 0.62 0.00 3.68
218 219 5.288472 GCTGTTTGGTTTGTGACTAACTTTG 59.712 40.000 9.55 0.00 0.00 2.77
219 220 5.407502 GCTGTTTGGTTTGTGACTAACTTT 58.592 37.500 9.55 0.00 0.00 2.66
220 221 4.142249 GGCTGTTTGGTTTGTGACTAACTT 60.142 41.667 9.55 0.00 0.00 2.66
221 222 3.380320 GGCTGTTTGGTTTGTGACTAACT 59.620 43.478 9.55 0.00 0.00 2.24
222 223 3.380320 AGGCTGTTTGGTTTGTGACTAAC 59.620 43.478 1.25 1.25 0.00 2.34
223 224 3.626930 AGGCTGTTTGGTTTGTGACTAA 58.373 40.909 0.00 0.00 0.00 2.24
224 225 3.211045 GAGGCTGTTTGGTTTGTGACTA 58.789 45.455 0.00 0.00 0.00 2.59
225 226 2.024414 GAGGCTGTTTGGTTTGTGACT 58.976 47.619 0.00 0.00 0.00 3.41
226 227 1.067060 GGAGGCTGTTTGGTTTGTGAC 59.933 52.381 0.00 0.00 0.00 3.67
227 228 1.064017 AGGAGGCTGTTTGGTTTGTGA 60.064 47.619 0.00 0.00 0.00 3.58
228 229 1.402787 AGGAGGCTGTTTGGTTTGTG 58.597 50.000 0.00 0.00 0.00 3.33
229 230 2.441750 TCTAGGAGGCTGTTTGGTTTGT 59.558 45.455 0.00 0.00 0.00 2.83
230 231 3.140325 TCTAGGAGGCTGTTTGGTTTG 57.860 47.619 0.00 0.00 0.00 2.93
231 232 3.876309 TTCTAGGAGGCTGTTTGGTTT 57.124 42.857 0.00 0.00 0.00 3.27
232 233 3.619979 CGATTCTAGGAGGCTGTTTGGTT 60.620 47.826 0.00 0.00 0.00 3.67
233 234 2.093447 CGATTCTAGGAGGCTGTTTGGT 60.093 50.000 0.00 0.00 0.00 3.67
234 235 2.168521 TCGATTCTAGGAGGCTGTTTGG 59.831 50.000 0.00 0.00 0.00 3.28
235 236 3.526931 TCGATTCTAGGAGGCTGTTTG 57.473 47.619 0.00 0.00 0.00 2.93
236 237 3.369576 GGTTCGATTCTAGGAGGCTGTTT 60.370 47.826 0.00 0.00 0.00 2.83
237 238 2.168728 GGTTCGATTCTAGGAGGCTGTT 59.831 50.000 0.00 0.00 0.00 3.16
238 239 1.757699 GGTTCGATTCTAGGAGGCTGT 59.242 52.381 0.00 0.00 0.00 4.40
239 240 1.757118 TGGTTCGATTCTAGGAGGCTG 59.243 52.381 0.00 0.00 0.00 4.85
240 241 2.160721 TGGTTCGATTCTAGGAGGCT 57.839 50.000 0.00 0.00 0.00 4.58
241 242 4.308265 GTTATGGTTCGATTCTAGGAGGC 58.692 47.826 0.00 0.00 0.00 4.70
242 243 4.558898 CGGTTATGGTTCGATTCTAGGAGG 60.559 50.000 0.00 0.00 0.00 4.30
243 244 4.547532 CGGTTATGGTTCGATTCTAGGAG 58.452 47.826 0.00 0.00 0.00 3.69
244 245 3.243636 GCGGTTATGGTTCGATTCTAGGA 60.244 47.826 0.00 0.00 0.00 2.94
245 246 3.057734 GCGGTTATGGTTCGATTCTAGG 58.942 50.000 0.00 0.00 0.00 3.02
246 247 3.978687 AGCGGTTATGGTTCGATTCTAG 58.021 45.455 0.00 0.00 0.00 2.43
247 248 3.382227 TGAGCGGTTATGGTTCGATTCTA 59.618 43.478 0.00 0.00 0.00 2.10
248 249 2.167693 TGAGCGGTTATGGTTCGATTCT 59.832 45.455 0.00 0.00 0.00 2.40
249 250 2.546778 TGAGCGGTTATGGTTCGATTC 58.453 47.619 0.00 0.00 0.00 2.52
250 251 2.676342 GTTGAGCGGTTATGGTTCGATT 59.324 45.455 0.00 0.00 0.00 3.34
251 252 2.277084 GTTGAGCGGTTATGGTTCGAT 58.723 47.619 0.00 0.00 0.00 3.59
252 253 1.001068 TGTTGAGCGGTTATGGTTCGA 59.999 47.619 0.00 0.00 0.00 3.71
253 254 1.434555 TGTTGAGCGGTTATGGTTCG 58.565 50.000 0.00 0.00 0.00 3.95
254 255 2.477863 GCATGTTGAGCGGTTATGGTTC 60.478 50.000 0.00 0.00 0.00 3.62
255 256 1.472480 GCATGTTGAGCGGTTATGGTT 59.528 47.619 0.00 0.00 0.00 3.67
256 257 1.094785 GCATGTTGAGCGGTTATGGT 58.905 50.000 0.00 0.00 0.00 3.55
257 258 1.064505 CAGCATGTTGAGCGGTTATGG 59.935 52.381 2.97 0.00 37.01 2.74
258 259 2.009051 TCAGCATGTTGAGCGGTTATG 58.991 47.619 8.32 0.00 37.40 1.90
325 326 1.760029 GGACCCTGACAGAGATCTTCC 59.240 57.143 3.32 0.00 0.00 3.46
342 343 3.246936 GCCAATATACTTTTCGACCGGAC 59.753 47.826 9.46 0.00 0.00 4.79
361 377 0.911769 CTCTACCCATTGTCCAGCCA 59.088 55.000 0.00 0.00 0.00 4.75
380 396 2.514824 GGGCTCGAATCCCACAGC 60.515 66.667 15.52 0.00 43.37 4.40
432 451 2.258013 CGCCCACCAATGTTGTCGT 61.258 57.895 0.00 0.00 0.00 4.34
441 460 0.888736 CACATCTTGTCGCCCACCAA 60.889 55.000 0.00 0.00 0.00 3.67
482 507 2.770164 AGACCTGGAATCCGTCAAAG 57.230 50.000 0.00 0.00 0.00 2.77
563 1067 9.598517 AAAAATGCATCTAACTTGTCTCAAAAA 57.401 25.926 0.00 0.00 0.00 1.94
588 1092 3.890756 ACACATGCATCTCACCTCAAAAA 59.109 39.130 0.00 0.00 0.00 1.94
589 1093 3.253921 CACACATGCATCTCACCTCAAAA 59.746 43.478 0.00 0.00 0.00 2.44
590 1094 2.815503 CACACATGCATCTCACCTCAAA 59.184 45.455 0.00 0.00 0.00 2.69
591 1095 2.224597 ACACACATGCATCTCACCTCAA 60.225 45.455 0.00 0.00 0.00 3.02
592 1096 1.348696 ACACACATGCATCTCACCTCA 59.651 47.619 0.00 0.00 0.00 3.86
593 1097 1.736126 CACACACATGCATCTCACCTC 59.264 52.381 0.00 0.00 0.00 3.85
596 1100 1.812235 TCCACACACATGCATCTCAC 58.188 50.000 0.00 0.00 0.00 3.51
747 1286 0.664767 AGAGAAAGCGCACGTCTGTC 60.665 55.000 11.47 0.00 0.00 3.51
748 1287 0.941463 CAGAGAAAGCGCACGTCTGT 60.941 55.000 11.47 4.35 31.77 3.41
753 1292 0.946221 AAGGACAGAGAAAGCGCACG 60.946 55.000 11.47 0.00 0.00 5.34
898 5302 1.812093 GTACGTTGCGCCCATGCTA 60.812 57.895 4.18 0.00 35.36 3.49
939 5561 4.227538 GCTGACATGATGCTATGAATTGC 58.772 43.478 0.00 0.00 0.00 3.56
942 5564 5.131067 ACTTGCTGACATGATGCTATGAAT 58.869 37.500 0.00 0.00 0.00 2.57
945 5567 4.895224 AACTTGCTGACATGATGCTATG 57.105 40.909 0.00 0.00 0.00 2.23
949 5571 5.239359 TCATAAACTTGCTGACATGATGC 57.761 39.130 0.00 0.74 0.00 3.91
1030 5656 1.269448 CGCCAACAGTAAAAGCATGGT 59.731 47.619 0.00 0.00 0.00 3.55
1066 5693 1.447140 GCACGTTGCCGACTCCATA 60.447 57.895 0.00 0.00 37.42 2.74
1524 7995 8.912988 AGAGAGATCTAAGTAAGTGAGATTTGG 58.087 37.037 0.00 0.00 30.01 3.28
1687 8446 5.116084 TGAAAGATAATTGTCTCCCAGGG 57.884 43.478 5.07 0.00 0.00 4.45
1742 8507 5.461032 AGCTTAGATATTGGAGAGAACCG 57.539 43.478 0.00 0.00 0.00 4.44
1744 8509 6.821388 TCCAAGCTTAGATATTGGAGAGAAC 58.179 40.000 0.00 0.00 45.76 3.01
1834 8599 4.933505 TCAAAAATGTTGCCACTCATGA 57.066 36.364 0.00 0.00 0.00 3.07
1861 8626 4.883354 CCAGGGAAGCCGGGATGC 62.883 72.222 2.18 0.00 0.00 3.91
1937 8702 3.922171 AGCTTCCAGAAGATGTTAGGG 57.078 47.619 11.57 0.00 40.79 3.53
1952 8717 6.332735 AGGTTACTCAAATTTGGAAGCTTC 57.667 37.500 18.54 18.54 0.00 3.86
1965 8730 9.059260 GTTATGTTGAAGGTTTAGGTTACTCAA 57.941 33.333 0.00 0.00 0.00 3.02
1969 8734 7.574404 GCTGGTTATGTTGAAGGTTTAGGTTAC 60.574 40.741 0.00 0.00 0.00 2.50
1973 8738 5.010282 AGCTGGTTATGTTGAAGGTTTAGG 58.990 41.667 0.00 0.00 0.00 2.69
2006 8771 4.963276 TGCATTTAAGAATTCCCAGTCG 57.037 40.909 0.65 0.00 0.00 4.18
2078 8852 2.383442 ACTGCGGTATAGATCCCAGT 57.617 50.000 0.00 0.00 34.30 4.00
2080 8854 2.769663 ACAAACTGCGGTATAGATCCCA 59.230 45.455 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.