Multiple sequence alignment - TraesCS6D01G204800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G204800 chr6D 100.000 7352 0 0 1 7352 290813396 290820747 0.000000e+00 13577.0
1 TraesCS6D01G204800 chr6D 93.473 766 13 5 6622 7352 377840408 377841171 0.000000e+00 1103.0
2 TraesCS6D01G204800 chr6D 93.272 758 16 3 6630 7352 162223289 162224046 0.000000e+00 1085.0
3 TraesCS6D01G204800 chr6D 92.941 765 17 5 6624 7352 436857981 436857218 0.000000e+00 1079.0
4 TraesCS6D01G204800 chr6D 91.219 763 20 6 6626 7352 114242375 114243126 0.000000e+00 994.0
5 TraesCS6D01G204800 chr6D 94.521 219 4 1 6630 6840 290823706 290823488 1.530000e-86 331.0
6 TraesCS6D01G204800 chr6D 91.558 154 13 0 1 154 388334688 388334535 5.780000e-51 213.0
7 TraesCS6D01G204800 chr6D 79.851 134 23 4 3860 3991 243707873 243707742 2.180000e-15 95.3
8 TraesCS6D01G204800 chr6A 89.779 3434 110 86 2144 5443 432881411 432878085 0.000000e+00 4174.0
9 TraesCS6D01G204800 chr6A 89.033 2079 91 60 150 2154 432883440 432881425 0.000000e+00 2449.0
10 TraesCS6D01G204800 chr6A 89.930 427 16 10 5940 6339 432877632 432877206 6.530000e-145 525.0
11 TraesCS6D01G204800 chr6A 97.608 209 5 0 5701 5909 432877990 432877782 7.010000e-95 359.0
12 TraesCS6D01G204800 chr6A 94.059 202 8 2 6430 6628 432877200 432877000 3.330000e-78 303.0
13 TraesCS6D01G204800 chr6A 89.474 76 6 2 5604 5678 432878055 432877981 2.180000e-15 95.3
14 TraesCS6D01G204800 chr6A 83.158 95 15 1 3900 3994 10594204 10594297 1.310000e-12 86.1
15 TraesCS6D01G204800 chr6B 91.991 1798 47 34 150 1878 451471717 451473486 0.000000e+00 2433.0
16 TraesCS6D01G204800 chr6B 91.232 1380 63 23 3158 4528 451477151 451478481 0.000000e+00 1825.0
17 TraesCS6D01G204800 chr6B 93.182 704 29 10 5769 6460 451479858 451480554 0.000000e+00 1016.0
18 TraesCS6D01G204800 chr6B 90.793 706 24 9 4950 5647 451479068 451479740 0.000000e+00 905.0
19 TraesCS6D01G204800 chr6B 83.163 879 46 36 1904 2745 451473625 451474438 0.000000e+00 710.0
20 TraesCS6D01G204800 chr6B 98.555 346 3 1 4525 4868 451478603 451478948 1.750000e-170 610.0
21 TraesCS6D01G204800 chr6B 90.871 241 14 3 2857 3093 451476656 451476892 4.280000e-82 316.0
22 TraesCS6D01G204800 chr6B 96.667 180 6 0 6451 6630 451480716 451480895 4.310000e-77 300.0
23 TraesCS6D01G204800 chr6B 80.351 285 36 17 1218 1488 637591636 637591358 1.620000e-46 198.0
24 TraesCS6D01G204800 chr6B 79.094 287 42 17 1215 1488 562865353 562865072 1.630000e-41 182.0
25 TraesCS6D01G204800 chr6B 78.397 287 44 17 1215 1488 549648717 549648998 3.530000e-38 171.0
26 TraesCS6D01G204800 chr6B 91.597 119 10 0 1370 1488 59505723 59505605 1.640000e-36 165.0
27 TraesCS6D01G204800 chr6B 97.619 84 2 0 5699 5782 451479752 451479835 2.140000e-30 145.0
28 TraesCS6D01G204800 chr6B 83.607 122 7 7 2747 2862 451476141 451476255 1.300000e-17 102.0
29 TraesCS6D01G204800 chr6B 84.615 65 8 2 3917 3980 688621223 688621286 6.160000e-06 63.9
30 TraesCS6D01G204800 chr6B 94.286 35 1 1 3378 3412 643000265 643000298 1.300000e-02 52.8
31 TraesCS6D01G204800 chr6B 94.286 35 1 1 3378 3412 643002062 643002095 1.300000e-02 52.8
32 TraesCS6D01G204800 chr6B 94.286 35 1 1 3378 3412 643003859 643003892 1.300000e-02 52.8
33 TraesCS6D01G204800 chr6B 94.286 35 1 1 3378 3412 643005656 643005689 1.300000e-02 52.8
34 TraesCS6D01G204800 chr7D 94.814 752 10 7 6630 7352 235492208 235491457 0.000000e+00 1146.0
35 TraesCS6D01G204800 chr7D 93.609 751 19 2 6631 7352 415421537 415420787 0.000000e+00 1094.0
36 TraesCS6D01G204800 chr7D 93.140 758 17 3 6630 7352 153662390 153661633 0.000000e+00 1079.0
37 TraesCS6D01G204800 chr7D 93.846 260 8 1 6630 6881 415411375 415411634 1.160000e-102 385.0
38 TraesCS6D01G204800 chr7D 92.810 153 10 1 1 153 388965772 388965621 3.450000e-53 220.0
39 TraesCS6D01G204800 chr5D 94.415 752 12 3 6630 7352 64243229 64243979 0.000000e+00 1129.0
40 TraesCS6D01G204800 chr5D 93.211 766 18 3 6621 7352 324259143 324258378 0.000000e+00 1096.0
41 TraesCS6D01G204800 chr5D 92.810 153 11 0 1 153 22428028 22428180 9.600000e-54 222.0
42 TraesCS6D01G204800 chr5D 92.810 153 11 0 1 153 455610540 455610388 9.600000e-54 222.0
43 TraesCS6D01G204800 chr5D 82.456 114 15 5 3882 3990 447683515 447683628 2.180000e-15 95.3
44 TraesCS6D01G204800 chr1D 94.024 753 16 2 6629 7352 138067690 138066938 0.000000e+00 1114.0
45 TraesCS6D01G204800 chr1D 93.668 758 13 3 6630 7352 201296439 201297196 0.000000e+00 1101.0
46 TraesCS6D01G204800 chr1D 90.347 259 17 1 6631 6881 442071306 442071564 4.250000e-87 333.0
47 TraesCS6D01G204800 chr1D 91.518 224 11 1 6627 6842 138060112 138060335 1.200000e-77 302.0
48 TraesCS6D01G204800 chr3D 93.369 754 15 4 6634 7352 364981634 364980881 0.000000e+00 1083.0
49 TraesCS6D01G204800 chr3D 93.263 757 16 3 6631 7352 531689116 531689872 0.000000e+00 1083.0
50 TraesCS6D01G204800 chr3D 93.462 260 8 2 6629 6879 471820945 471820686 1.940000e-100 377.0
51 TraesCS6D01G204800 chr3D 88.406 69 4 4 3375 3439 57172914 57172846 6.110000e-11 80.5
52 TraesCS6D01G204800 chr3D 94.872 39 2 0 3953 3991 556837065 556837103 2.210000e-05 62.1
53 TraesCS6D01G204800 chr4D 93.131 757 17 3 6631 7352 310385322 310384566 0.000000e+00 1077.0
54 TraesCS6D01G204800 chr4D 96.183 131 5 0 23 153 37496897 37496767 1.610000e-51 215.0
55 TraesCS6D01G204800 chr4D 90.850 153 14 0 1 153 479407499 479407347 9.670000e-49 206.0
56 TraesCS6D01G204800 chr4D 75.610 205 40 8 3796 3992 155596047 155596249 7.850000e-15 93.5
57 TraesCS6D01G204800 chrUn 92.652 626 10 4 6762 7352 363913442 363914066 0.000000e+00 869.0
58 TraesCS6D01G204800 chrUn 75.945 291 52 15 1212 1488 276692196 276692482 4.630000e-27 134.0
59 TraesCS6D01G204800 chr2D 92.208 154 12 0 1 154 65640304 65640151 1.240000e-52 219.0
60 TraesCS6D01G204800 chr2D 94.118 119 7 0 1370 1488 459310173 459310291 1.630000e-41 182.0
61 TraesCS6D01G204800 chr2D 82.895 76 13 0 3914 3989 20845218 20845293 1.320000e-07 69.4
62 TraesCS6D01G204800 chr5B 80.488 287 38 15 1215 1488 26437891 26438172 3.480000e-48 204.0
63 TraesCS6D01G204800 chr5B 74.648 213 45 6 3796 3999 675950389 675950177 1.310000e-12 86.1
64 TraesCS6D01G204800 chr7A 90.260 154 15 0 1 154 316541348 316541501 1.250000e-47 202.0
65 TraesCS6D01G204800 chr1A 90.132 152 15 0 1 152 533262839 533262990 1.620000e-46 198.0
66 TraesCS6D01G204800 chr1A 81.481 108 16 4 3885 3990 143280665 143280770 1.310000e-12 86.1
67 TraesCS6D01G204800 chr2B 94.118 119 7 0 1370 1488 540704069 540704187 1.630000e-41 182.0
68 TraesCS6D01G204800 chr2B 78.049 287 45 17 1215 1488 737735864 737736145 1.640000e-36 165.0
69 TraesCS6D01G204800 chr2B 90.244 82 6 2 1212 1291 540703901 540703982 1.010000e-18 106.0
70 TraesCS6D01G204800 chr2B 94.872 39 1 1 4056 4093 697510109 697510071 7.970000e-05 60.2
71 TraesCS6D01G204800 chr2A 93.333 120 8 0 1369 1488 602477809 602477928 2.110000e-40 178.0
72 TraesCS6D01G204800 chr2A 82.796 93 16 0 3899 3991 131853754 131853846 4.730000e-12 84.2
73 TraesCS6D01G204800 chr3B 89.209 139 11 4 1351 1488 786705222 786705357 3.530000e-38 171.0
74 TraesCS6D01G204800 chr5A 84.615 78 12 0 3913 3990 450557388 450557465 2.200000e-10 78.7
75 TraesCS6D01G204800 chr3A 80.645 93 17 1 3900 3992 715965579 715965670 3.680000e-08 71.3
76 TraesCS6D01G204800 chr1B 87.719 57 5 2 3378 3434 454359076 454359130 1.710000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G204800 chr6D 290813396 290820747 7351 False 13577.00 13577 100.000000 1 7352 1 chr6D.!!$F3 7351
1 TraesCS6D01G204800 chr6D 377840408 377841171 763 False 1103.00 1103 93.473000 6622 7352 1 chr6D.!!$F4 730
2 TraesCS6D01G204800 chr6D 162223289 162224046 757 False 1085.00 1085 93.272000 6630 7352 1 chr6D.!!$F2 722
3 TraesCS6D01G204800 chr6D 436857218 436857981 763 True 1079.00 1079 92.941000 6624 7352 1 chr6D.!!$R4 728
4 TraesCS6D01G204800 chr6D 114242375 114243126 751 False 994.00 994 91.219000 6626 7352 1 chr6D.!!$F1 726
5 TraesCS6D01G204800 chr6A 432877000 432883440 6440 True 1317.55 4174 91.647167 150 6628 6 chr6A.!!$R1 6478
6 TraesCS6D01G204800 chr6B 451471717 451480895 9178 False 836.20 2433 91.768000 150 6630 10 chr6B.!!$F3 6480
7 TraesCS6D01G204800 chr7D 235491457 235492208 751 True 1146.00 1146 94.814000 6630 7352 1 chr7D.!!$R2 722
8 TraesCS6D01G204800 chr7D 415420787 415421537 750 True 1094.00 1094 93.609000 6631 7352 1 chr7D.!!$R4 721
9 TraesCS6D01G204800 chr7D 153661633 153662390 757 True 1079.00 1079 93.140000 6630 7352 1 chr7D.!!$R1 722
10 TraesCS6D01G204800 chr5D 64243229 64243979 750 False 1129.00 1129 94.415000 6630 7352 1 chr5D.!!$F2 722
11 TraesCS6D01G204800 chr5D 324258378 324259143 765 True 1096.00 1096 93.211000 6621 7352 1 chr5D.!!$R1 731
12 TraesCS6D01G204800 chr1D 138066938 138067690 752 True 1114.00 1114 94.024000 6629 7352 1 chr1D.!!$R1 723
13 TraesCS6D01G204800 chr1D 201296439 201297196 757 False 1101.00 1101 93.668000 6630 7352 1 chr1D.!!$F2 722
14 TraesCS6D01G204800 chr3D 364980881 364981634 753 True 1083.00 1083 93.369000 6634 7352 1 chr3D.!!$R2 718
15 TraesCS6D01G204800 chr3D 531689116 531689872 756 False 1083.00 1083 93.263000 6631 7352 1 chr3D.!!$F1 721
16 TraesCS6D01G204800 chr4D 310384566 310385322 756 True 1077.00 1077 93.131000 6631 7352 1 chr4D.!!$R2 721
17 TraesCS6D01G204800 chrUn 363913442 363914066 624 False 869.00 869 92.652000 6762 7352 1 chrUn.!!$F2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.026156 TGCGCGCAGACATAAAATCG 59.974 50.000 33.09 0.00 0.00 3.34 F
110 111 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79 F
113 114 0.305313 CGGACAAAAAGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46 F
1955 2204 0.320946 CGGTCACGGTTGGTAATGGT 60.321 55.000 0.00 0.00 36.18 3.55 F
2997 5496 0.591170 CCAAGTTCATTCCGTTGCGT 59.409 50.000 0.00 0.00 0.00 5.24 F
3155 5861 0.093705 CTCGTGCGAGCAAGTAAAGC 59.906 55.000 8.71 0.00 35.31 3.51 F
3213 5919 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82 F
3727 6433 1.133790 GATGATCTGGTTGCAACTGGC 59.866 52.381 27.64 12.92 45.13 4.85 F
5683 8633 0.614697 CCGGGGGCATTCCTCTTTTT 60.615 55.000 0.00 0.00 32.36 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 1995 0.253327 TGGTAGTGGCACAACACACA 59.747 50.000 21.41 11.1 44.16 3.72 R
1883 2001 0.878416 GCGATTTGGTAGTGGCACAA 59.122 50.000 21.41 5.0 44.16 3.33 R
1965 2214 1.154727 CGACGCAGCACCGTTTTAC 60.155 57.895 3.20 0.0 42.24 2.01 R
3136 5842 0.093705 GCTTTACTTGCTCGCACGAG 59.906 55.000 15.50 15.5 44.56 4.18 R
4265 7006 2.643551 CGGTCAGTGAATAATGGGCTT 58.356 47.619 0.00 0.0 0.00 4.35 R
4983 7919 3.813166 TCTGGAAATCAAACTGTTCGGTC 59.187 43.478 0.00 0.0 0.00 4.79 R
5201 8142 2.724977 TCAGACAGAGCAGTAAACGG 57.275 50.000 0.00 0.0 0.00 4.44 R
5697 8647 1.252904 GCACCACAGGATGCACCATT 61.253 55.000 7.86 0.0 42.53 3.16 R
6709 10021 1.234615 GCAGGCGCTACACAAAAGGA 61.235 55.000 7.64 0.0 34.30 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.627863 AATTGCGCGCAGACATAAAA 57.372 40.000 34.25 17.54 0.00 1.52
20 21 2.849880 ATTGCGCGCAGACATAAAAT 57.150 40.000 34.25 19.15 0.00 1.82
21 22 2.172593 TTGCGCGCAGACATAAAATC 57.827 45.000 34.25 0.00 0.00 2.17
22 23 0.026156 TGCGCGCAGACATAAAATCG 59.974 50.000 33.09 0.00 0.00 3.34
23 24 0.654472 GCGCGCAGACATAAAATCGG 60.654 55.000 29.10 0.00 0.00 4.18
24 25 0.650512 CGCGCAGACATAAAATCGGT 59.349 50.000 8.75 0.00 0.00 4.69
25 26 1.332028 CGCGCAGACATAAAATCGGTC 60.332 52.381 8.75 0.00 0.00 4.79
26 27 1.332028 GCGCAGACATAAAATCGGTCG 60.332 52.381 0.30 0.00 36.68 4.79
27 28 1.257936 CGCAGACATAAAATCGGTCGG 59.742 52.381 0.00 0.00 36.68 4.79
28 29 1.003866 GCAGACATAAAATCGGTCGGC 60.004 52.381 0.00 0.00 43.31 5.54
29 30 1.257936 CAGACATAAAATCGGTCGGCG 59.742 52.381 0.00 0.00 36.68 6.46
30 31 0.042448 GACATAAAATCGGTCGGCGC 60.042 55.000 0.00 0.00 0.00 6.53
31 32 0.741574 ACATAAAATCGGTCGGCGCA 60.742 50.000 10.83 0.00 0.00 6.09
32 33 0.315869 CATAAAATCGGTCGGCGCAC 60.316 55.000 10.83 0.00 0.00 5.34
33 34 0.461339 ATAAAATCGGTCGGCGCACT 60.461 50.000 10.83 0.00 0.00 4.40
34 35 1.355796 TAAAATCGGTCGGCGCACTG 61.356 55.000 10.83 4.81 0.00 3.66
55 56 3.140814 GCCCTGCCGACCCAAATC 61.141 66.667 0.00 0.00 0.00 2.17
56 57 2.677228 CCCTGCCGACCCAAATCT 59.323 61.111 0.00 0.00 0.00 2.40
57 58 1.912220 CCCTGCCGACCCAAATCTA 59.088 57.895 0.00 0.00 0.00 1.98
58 59 0.254747 CCCTGCCGACCCAAATCTAA 59.745 55.000 0.00 0.00 0.00 2.10
59 60 1.340600 CCCTGCCGACCCAAATCTAAA 60.341 52.381 0.00 0.00 0.00 1.85
60 61 2.442413 CCTGCCGACCCAAATCTAAAA 58.558 47.619 0.00 0.00 0.00 1.52
61 62 2.423538 CCTGCCGACCCAAATCTAAAAG 59.576 50.000 0.00 0.00 0.00 2.27
62 63 3.343617 CTGCCGACCCAAATCTAAAAGA 58.656 45.455 0.00 0.00 0.00 2.52
63 64 3.343617 TGCCGACCCAAATCTAAAAGAG 58.656 45.455 0.00 0.00 0.00 2.85
64 65 2.683362 GCCGACCCAAATCTAAAAGAGG 59.317 50.000 0.00 0.00 0.00 3.69
65 66 2.683362 CCGACCCAAATCTAAAAGAGGC 59.317 50.000 0.00 0.00 0.00 4.70
66 67 2.683362 CGACCCAAATCTAAAAGAGGCC 59.317 50.000 0.00 0.00 0.00 5.19
67 68 2.683362 GACCCAAATCTAAAAGAGGCCG 59.317 50.000 0.00 0.00 0.00 6.13
68 69 2.024414 CCCAAATCTAAAAGAGGCCGG 58.976 52.381 0.00 0.00 0.00 6.13
69 70 2.356741 CCCAAATCTAAAAGAGGCCGGA 60.357 50.000 5.05 0.00 0.00 5.14
70 71 2.683362 CCAAATCTAAAAGAGGCCGGAC 59.317 50.000 5.05 0.00 0.00 4.79
71 72 2.311124 AATCTAAAAGAGGCCGGACG 57.689 50.000 5.05 0.00 0.00 4.79
72 73 0.179081 ATCTAAAAGAGGCCGGACGC 60.179 55.000 5.05 3.00 0.00 5.19
104 105 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
105 106 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
106 107 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
107 108 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
108 109 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
109 110 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
110 111 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79
111 112 0.810823 AACGGACAAAAAGCGGACGA 60.811 50.000 0.00 0.00 0.00 4.20
112 113 0.810823 ACGGACAAAAAGCGGACGAA 60.811 50.000 0.00 0.00 0.00 3.85
113 114 0.305313 CGGACAAAAAGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46
114 115 1.069500 CGGACAAAAAGCGGACGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
115 116 2.581637 GGACAAAAAGCGGACGAAATC 58.418 47.619 0.00 0.00 0.00 2.17
116 117 2.230864 GACAAAAAGCGGACGAAATCG 58.769 47.619 0.48 0.48 46.33 3.34
125 126 2.048877 ACGAAATCGCCGTCCGTT 60.049 55.556 2.15 0.00 44.43 4.44
126 127 1.665599 ACGAAATCGCCGTCCGTTT 60.666 52.632 2.15 0.00 44.43 3.60
127 128 1.225637 CGAAATCGCCGTCCGTTTG 60.226 57.895 0.00 0.00 38.35 2.93
128 129 1.133869 GAAATCGCCGTCCGTTTGG 59.866 57.895 0.00 0.00 38.35 3.28
129 130 2.248274 GAAATCGCCGTCCGTTTGGG 62.248 60.000 0.00 0.00 38.35 4.12
130 131 3.540367 AATCGCCGTCCGTTTGGGT 62.540 57.895 0.00 0.00 38.35 4.51
131 132 3.945304 ATCGCCGTCCGTTTGGGTC 62.945 63.158 0.00 0.00 38.35 4.46
145 146 2.355115 GGTCGCCCCATTGGAGTT 59.645 61.111 3.62 0.00 35.07 3.01
146 147 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
147 148 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
148 149 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
177 178 7.170965 ACAACTTTCCTGATGTGACTATGATT 58.829 34.615 0.00 0.00 0.00 2.57
192 193 9.533253 GTGACTATGATTTTCCCCAATTTTATG 57.467 33.333 0.00 0.00 0.00 1.90
567 582 1.959282 AGGGTGAAAAGCAGAGCAAAG 59.041 47.619 0.00 0.00 0.00 2.77
642 657 2.440409 CCTCCACCTGTTCCATTTCTG 58.560 52.381 0.00 0.00 0.00 3.02
643 658 1.815003 CTCCACCTGTTCCATTTCTGC 59.185 52.381 0.00 0.00 0.00 4.26
675 690 3.452627 ACCTACTGCTCACCAATAGAAGG 59.547 47.826 0.00 0.00 0.00 3.46
770 799 1.194547 GGCACACACATTGTCACGTAG 59.805 52.381 0.00 0.00 35.67 3.51
771 800 1.864711 GCACACACATTGTCACGTAGT 59.135 47.619 0.00 0.00 37.64 2.73
773 802 3.121126 GCACACACATTGTCACGTAGTAC 60.121 47.826 0.00 0.00 34.82 2.73
774 803 4.045783 CACACACATTGTCACGTAGTACA 58.954 43.478 0.38 0.00 34.82 2.90
775 804 4.148174 CACACACATTGTCACGTAGTACAG 59.852 45.833 0.38 0.00 34.82 2.74
952 1005 4.718143 CCCCCTCTCTTCTCCTCC 57.282 66.667 0.00 0.00 0.00 4.30
953 1006 1.456705 CCCCCTCTCTTCTCCTCCG 60.457 68.421 0.00 0.00 0.00 4.63
1532 1605 0.393673 TTCCCCCATGCATGTACGTG 60.394 55.000 24.58 10.89 0.00 4.49
1542 1624 4.182693 TGCATGTACGTGCTAGTACTTT 57.817 40.909 33.63 0.00 45.23 2.66
1543 1625 3.924073 TGCATGTACGTGCTAGTACTTTG 59.076 43.478 33.63 16.22 45.23 2.77
1544 1626 3.924686 GCATGTACGTGCTAGTACTTTGT 59.075 43.478 28.84 2.65 45.23 2.83
1545 1627 4.031426 GCATGTACGTGCTAGTACTTTGTC 59.969 45.833 28.84 0.00 45.23 3.18
1546 1628 5.399858 CATGTACGTGCTAGTACTTTGTCT 58.600 41.667 18.23 0.00 45.23 3.41
1547 1629 6.549061 CATGTACGTGCTAGTACTTTGTCTA 58.451 40.000 18.23 2.76 45.23 2.59
1562 1665 2.517402 CTAGCTCCCGCTCCGTCT 60.517 66.667 0.00 0.00 45.15 4.18
1565 1668 4.856607 GCTCCCGCTCCGTCTTCG 62.857 72.222 0.00 0.00 0.00 3.79
1575 1678 2.633509 CCGTCTTCGTCCCGTCCTT 61.634 63.158 0.00 0.00 35.01 3.36
1583 1686 1.072505 GTCCCGTCCTTTGAAGGCA 59.927 57.895 4.87 0.00 46.06 4.75
1681 1791 6.237901 TCCATCCATTCCGTAATATCTTTGG 58.762 40.000 0.00 0.00 0.00 3.28
1832 1950 2.662596 CCACGCCAGTTCCTGCTA 59.337 61.111 0.00 0.00 0.00 3.49
1833 1951 1.003839 CCACGCCAGTTCCTGCTAA 60.004 57.895 0.00 0.00 0.00 3.09
1861 1979 2.787473 TGCCACACCCTTCATCTTAG 57.213 50.000 0.00 0.00 0.00 2.18
1863 1981 3.178046 TGCCACACCCTTCATCTTAGTA 58.822 45.455 0.00 0.00 0.00 1.82
1864 1982 3.197766 TGCCACACCCTTCATCTTAGTAG 59.802 47.826 0.00 0.00 0.00 2.57
1865 1983 3.451178 GCCACACCCTTCATCTTAGTAGA 59.549 47.826 0.00 0.00 34.21 2.59
1868 1986 5.422331 CCACACCCTTCATCTTAGTAGAAGA 59.578 44.000 14.40 0.00 40.85 2.87
1869 1987 6.098982 CCACACCCTTCATCTTAGTAGAAGAT 59.901 42.308 14.40 0.35 40.85 2.40
1877 1995 5.911752 CATCTTAGTAGAAGATGTGCCACT 58.088 41.667 15.92 0.00 45.20 4.00
1878 1996 5.330455 TCTTAGTAGAAGATGTGCCACTG 57.670 43.478 0.00 0.00 0.00 3.66
1879 1997 4.772624 TCTTAGTAGAAGATGTGCCACTGT 59.227 41.667 0.00 0.00 0.00 3.55
1880 1998 3.325293 AGTAGAAGATGTGCCACTGTG 57.675 47.619 0.00 0.00 0.00 3.66
1881 1999 2.634940 AGTAGAAGATGTGCCACTGTGT 59.365 45.455 7.08 0.00 0.00 3.72
1882 2000 1.888215 AGAAGATGTGCCACTGTGTG 58.112 50.000 7.08 0.00 0.00 3.82
1883 2001 1.141657 AGAAGATGTGCCACTGTGTGT 59.858 47.619 7.08 0.00 0.00 3.72
1908 2026 3.121544 GCCACTACCAAATCGCTAGTAC 58.878 50.000 0.00 0.00 0.00 2.73
1955 2204 0.320946 CGGTCACGGTTGGTAATGGT 60.321 55.000 0.00 0.00 36.18 3.55
1957 2206 1.161843 GTCACGGTTGGTAATGGTGG 58.838 55.000 0.00 0.00 0.00 4.61
1958 2207 0.606944 TCACGGTTGGTAATGGTGGC 60.607 55.000 0.00 0.00 0.00 5.01
1964 2213 0.891449 TTGGTAATGGTGGCGTGGTG 60.891 55.000 0.00 0.00 0.00 4.17
1965 2214 2.043980 GGTAATGGTGGCGTGGTGG 61.044 63.158 0.00 0.00 0.00 4.61
2079 2331 5.535030 GGGGGTTATGGTCTTTTATGCTAAG 59.465 44.000 0.00 0.00 0.00 2.18
2080 2332 6.362248 GGGGTTATGGTCTTTTATGCTAAGA 58.638 40.000 0.00 0.00 0.00 2.10
2082 2334 8.161425 GGGGTTATGGTCTTTTATGCTAAGATA 58.839 37.037 0.00 0.00 34.42 1.98
2083 2335 9.740710 GGGTTATGGTCTTTTATGCTAAGATAT 57.259 33.333 0.00 0.00 34.42 1.63
2116 2368 1.135257 GGCCATATGGTCGATCTCTCG 60.135 57.143 22.79 0.00 39.98 4.04
2154 2431 4.741321 AGCTCCATTTTCTCTCTCTCTG 57.259 45.455 0.00 0.00 0.00 3.35
2184 2461 2.358003 GTGAGCTGCTCGCCAAGT 60.358 61.111 28.16 0.00 40.39 3.16
2185 2462 1.079819 GTGAGCTGCTCGCCAAGTA 60.080 57.895 28.16 5.75 40.39 2.24
2206 2492 9.265901 CAAGTATATTATCAGGTCAGAACAAGG 57.734 37.037 0.00 0.00 0.00 3.61
2207 2493 7.445945 AGTATATTATCAGGTCAGAACAAGGC 58.554 38.462 0.00 0.00 0.00 4.35
2213 2499 1.004440 GTCAGAACAAGGCGGCTCT 60.004 57.895 13.70 1.46 0.00 4.09
2241 2545 5.759506 TCTTTTCATGGCGTTGTTTAGAA 57.240 34.783 0.00 0.00 0.00 2.10
2244 2548 6.483974 TCTTTTCATGGCGTTGTTTAGAACTA 59.516 34.615 0.00 0.00 0.00 2.24
2247 2551 4.927425 TCATGGCGTTGTTTAGAACTAGAC 59.073 41.667 0.00 0.00 0.00 2.59
2250 2554 5.706916 TGGCGTTGTTTAGAACTAGACTAG 58.293 41.667 8.00 8.00 0.00 2.57
2251 2555 5.474532 TGGCGTTGTTTAGAACTAGACTAGA 59.525 40.000 16.55 0.00 0.00 2.43
2253 2557 6.028987 GCGTTGTTTAGAACTAGACTAGAGG 58.971 44.000 16.55 0.00 0.00 3.69
2267 2571 3.211865 ACTAGAGGAATGTATGCGTCGA 58.788 45.455 0.00 0.00 0.00 4.20
2269 2573 1.749063 AGAGGAATGTATGCGTCGACA 59.251 47.619 17.16 0.00 0.00 4.35
2270 2574 2.120232 GAGGAATGTATGCGTCGACAG 58.880 52.381 17.16 9.59 0.00 3.51
2276 2592 1.746239 TATGCGTCGACAGACCCGA 60.746 57.895 17.16 0.00 44.28 5.14
2527 2859 3.846430 GGGATCGGACGGTGGGTC 61.846 72.222 0.00 0.00 45.31 4.46
2557 2889 4.323843 CGGACGGACGGATAGGCG 62.324 72.222 0.00 0.00 0.00 5.52
2558 2890 4.642542 GGACGGACGGATAGGCGC 62.643 72.222 0.00 0.00 0.00 6.53
2559 2891 4.642542 GACGGACGGATAGGCGCC 62.643 72.222 21.89 21.89 0.00 6.53
2561 2893 4.647615 CGGACGGATAGGCGCCTG 62.648 72.222 38.98 24.13 0.00 4.85
2562 2894 3.537874 GGACGGATAGGCGCCTGT 61.538 66.667 38.98 33.40 0.00 4.00
2563 2895 2.198287 GGACGGATAGGCGCCTGTA 61.198 63.158 38.98 21.43 0.00 2.74
2564 2896 1.286260 GACGGATAGGCGCCTGTAG 59.714 63.158 38.98 28.70 0.00 2.74
2565 2897 2.049063 CGGATAGGCGCCTGTAGC 60.049 66.667 38.98 22.84 38.52 3.58
2566 2898 2.856628 CGGATAGGCGCCTGTAGCA 61.857 63.158 38.98 19.70 44.04 3.49
2567 2899 1.301009 GGATAGGCGCCTGTAGCAC 60.301 63.158 38.98 19.56 44.04 4.40
2568 2900 1.301009 GATAGGCGCCTGTAGCACC 60.301 63.158 38.98 16.14 44.66 5.01
2748 3110 5.748670 ACCTCTCCTCCTCTTTTCTTTAC 57.251 43.478 0.00 0.00 0.00 2.01
2883 5378 4.939509 TTTTAGATGTGTTAGCCGAAGC 57.060 40.909 0.00 0.00 40.32 3.86
2997 5496 0.591170 CCAAGTTCATTCCGTTGCGT 59.409 50.000 0.00 0.00 0.00 5.24
3111 5817 2.717530 CTGTGCGATAACGACCTAGTC 58.282 52.381 0.00 0.00 42.66 2.59
3127 5833 7.058298 GACCTAGTCGAGTAAATTTGTTTCC 57.942 40.000 0.00 0.00 0.00 3.13
3135 5841 9.244799 GTCGAGTAAATTTGTTTCCATCTTTTT 57.755 29.630 0.00 0.00 0.00 1.94
3136 5842 9.458374 TCGAGTAAATTTGTTTCCATCTTTTTC 57.542 29.630 0.00 0.00 0.00 2.29
3137 5843 9.463443 CGAGTAAATTTGTTTCCATCTTTTTCT 57.537 29.630 0.00 0.00 0.00 2.52
3139 5845 9.463443 AGTAAATTTGTTTCCATCTTTTTCTCG 57.537 29.630 0.00 0.00 0.00 4.04
3140 5846 9.244799 GTAAATTTGTTTCCATCTTTTTCTCGT 57.755 29.630 0.00 0.00 0.00 4.18
3141 5847 7.698836 AATTTGTTTCCATCTTTTTCTCGTG 57.301 32.000 0.00 0.00 0.00 4.35
3142 5848 4.223320 TGTTTCCATCTTTTTCTCGTGC 57.777 40.909 0.00 0.00 0.00 5.34
3143 5849 3.226347 GTTTCCATCTTTTTCTCGTGCG 58.774 45.455 0.00 0.00 0.00 5.34
3144 5850 2.448926 TCCATCTTTTTCTCGTGCGA 57.551 45.000 0.00 0.00 0.00 5.10
3145 5851 2.337583 TCCATCTTTTTCTCGTGCGAG 58.662 47.619 14.69 14.69 43.21 5.03
3146 5852 1.201965 CCATCTTTTTCTCGTGCGAGC 60.202 52.381 15.86 0.00 41.71 5.03
3147 5853 1.460743 CATCTTTTTCTCGTGCGAGCA 59.539 47.619 15.86 3.23 41.71 4.26
3148 5854 1.577468 TCTTTTTCTCGTGCGAGCAA 58.423 45.000 15.86 9.43 41.71 3.91
3149 5855 1.526887 TCTTTTTCTCGTGCGAGCAAG 59.473 47.619 15.86 15.64 41.71 4.01
3150 5856 1.261619 CTTTTTCTCGTGCGAGCAAGT 59.738 47.619 15.86 0.00 41.71 3.16
3151 5857 2.143008 TTTTCTCGTGCGAGCAAGTA 57.857 45.000 15.86 0.00 41.71 2.24
3152 5858 2.143008 TTTCTCGTGCGAGCAAGTAA 57.857 45.000 15.86 3.08 41.71 2.24
3153 5859 2.143008 TTCTCGTGCGAGCAAGTAAA 57.857 45.000 15.86 2.42 41.71 2.01
3154 5860 1.698165 TCTCGTGCGAGCAAGTAAAG 58.302 50.000 15.86 2.12 41.71 1.85
3155 5861 0.093705 CTCGTGCGAGCAAGTAAAGC 59.906 55.000 8.71 0.00 35.31 3.51
3156 5862 1.132640 CGTGCGAGCAAGTAAAGCC 59.867 57.895 0.00 0.00 0.00 4.35
3207 5913 9.002080 GTAAATAAACTTTACACACACACACAC 57.998 33.333 3.61 0.00 35.54 3.82
3213 5919 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3218 5924 3.181486 ACACACACACACACACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
3688 6394 2.588034 GGTGCTATCGAACCCCGC 60.588 66.667 0.00 0.00 38.37 6.13
3727 6433 1.133790 GATGATCTGGTTGCAACTGGC 59.866 52.381 27.64 12.92 45.13 4.85
3755 6461 7.065803 GGACACTTTGTGCTGCTATAAATCTTA 59.934 37.037 0.00 0.00 35.71 2.10
3762 6468 7.513856 TGTGCTGCTATAAATCTTATGGGTAA 58.486 34.615 0.00 0.00 0.00 2.85
3777 6483 4.822685 TGGGTAAGTATCGCAAACCTTA 57.177 40.909 0.00 0.00 0.00 2.69
3779 6485 4.223477 TGGGTAAGTATCGCAAACCTTACT 59.777 41.667 0.00 0.00 39.32 2.24
3780 6486 4.807834 GGGTAAGTATCGCAAACCTTACTC 59.192 45.833 0.00 0.00 39.32 2.59
3781 6487 4.807834 GGTAAGTATCGCAAACCTTACTCC 59.192 45.833 0.00 0.00 39.32 3.85
3782 6488 3.538634 AGTATCGCAAACCTTACTCCC 57.461 47.619 0.00 0.00 0.00 4.30
3783 6489 2.159142 AGTATCGCAAACCTTACTCCCG 60.159 50.000 0.00 0.00 0.00 5.14
3785 6491 2.396157 CGCAAACCTTACTCCCGCC 61.396 63.158 0.00 0.00 0.00 6.13
3786 6492 1.302993 GCAAACCTTACTCCCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
4065 6780 6.903883 ACCAAATGCGACTAAATAGTACAG 57.096 37.500 0.00 0.00 36.50 2.74
4088 6803 7.934120 ACAGCCTCTGTTCATTAATATAAGACC 59.066 37.037 0.00 0.00 42.59 3.85
4265 7006 6.094742 TGTTACTTGTGCAACTTCAGATTCAA 59.905 34.615 0.00 0.00 38.04 2.69
4713 7600 3.505680 TGTCCTGGTACAAATTGATGTGC 59.494 43.478 0.00 0.00 38.70 4.57
4864 7753 4.082517 TGCCATTAAGCATGCGTCTTTTTA 60.083 37.500 10.11 0.00 38.00 1.52
5140 8081 7.093771 TGGCGTCTGAATCTGATATATACACAT 60.094 37.037 0.00 0.00 0.00 3.21
5141 8082 8.406297 GGCGTCTGAATCTGATATATACACATA 58.594 37.037 0.00 0.00 0.00 2.29
5142 8083 9.227490 GCGTCTGAATCTGATATATACACATAC 57.773 37.037 0.00 0.00 0.00 2.39
5143 8084 9.427127 CGTCTGAATCTGATATATACACATACG 57.573 37.037 0.00 0.00 0.00 3.06
5190 8131 7.201333 GCTCTCACAACTCGTAGTATTTGTTAC 60.201 40.741 0.00 0.00 0.00 2.50
5201 8142 9.309516 TCGTAGTATTTGTTACCAATTCTCATC 57.690 33.333 0.00 0.00 0.00 2.92
5260 8201 3.081804 ACCGGATTTGACCACTTGAATC 58.918 45.455 9.46 0.00 0.00 2.52
5261 8202 2.095853 CCGGATTTGACCACTTGAATCG 59.904 50.000 0.00 0.00 31.03 3.34
5302 8245 4.152580 GCACCTTTACTAGTTTGCTCAGAC 59.847 45.833 0.00 0.00 31.42 3.51
5306 8249 6.267014 ACCTTTACTAGTTTGCTCAGACACTA 59.733 38.462 0.00 0.00 0.00 2.74
5483 8431 3.181450 GCTGGTTATCCATAGGCTTGAGT 60.181 47.826 0.00 0.00 43.43 3.41
5544 8492 6.806751 TCCTCCTCTTCAAAACATATACTCG 58.193 40.000 0.00 0.00 0.00 4.18
5572 8521 2.027460 CACAAAACGGGGCTGTGC 59.973 61.111 0.00 0.00 34.55 4.57
5652 8602 0.700564 ATGGGGACTTGCATCACACT 59.299 50.000 0.00 0.00 0.00 3.55
5654 8604 1.003118 TGGGGACTTGCATCACACTAC 59.997 52.381 0.00 0.00 0.00 2.73
5655 8605 1.003118 GGGGACTTGCATCACACTACA 59.997 52.381 0.00 0.00 0.00 2.74
5665 8615 6.618287 TGCATCACACTACATTATTTAGCC 57.382 37.500 0.00 0.00 0.00 3.93
5667 8617 5.334105 GCATCACACTACATTATTTAGCCGG 60.334 44.000 0.00 0.00 0.00 6.13
5668 8618 4.699637 TCACACTACATTATTTAGCCGGG 58.300 43.478 2.18 0.00 0.00 5.73
5669 8619 3.813166 CACACTACATTATTTAGCCGGGG 59.187 47.826 2.18 0.00 0.00 5.73
5670 8620 3.181448 ACACTACATTATTTAGCCGGGGG 60.181 47.826 2.18 0.00 0.00 5.40
5681 8631 2.683475 CCGGGGGCATTCCTCTTT 59.317 61.111 0.00 0.00 32.36 2.52
5682 8632 1.000359 CCGGGGGCATTCCTCTTTT 60.000 57.895 0.00 0.00 32.36 2.27
5683 8633 0.614697 CCGGGGGCATTCCTCTTTTT 60.615 55.000 0.00 0.00 32.36 1.94
5782 8732 4.338400 AGAGATCATGTGGCATCAAATGTG 59.662 41.667 0.00 0.00 39.17 3.21
5910 8896 8.235226 TCTGAATTAGCGAATTATCCTACTACG 58.765 37.037 4.66 0.00 35.33 3.51
5912 8898 9.002600 TGAATTAGCGAATTATCCTACTACGTA 57.997 33.333 4.66 0.00 35.33 3.57
5914 8900 5.294050 AGCGAATTATCCTACTACGTAGC 57.706 43.478 22.40 4.55 35.06 3.58
5915 8901 5.002516 AGCGAATTATCCTACTACGTAGCT 58.997 41.667 22.40 11.95 35.06 3.32
5916 8902 5.472820 AGCGAATTATCCTACTACGTAGCTT 59.527 40.000 22.40 6.72 35.06 3.74
5961 9066 1.445754 CACTGAGACAGCAGCTCGG 60.446 63.158 0.00 7.51 42.97 4.63
6036 9141 7.254590 GGTGGAGTCTCTCGAATATGAAAAATG 60.255 40.741 0.00 0.00 0.00 2.32
6067 9177 1.003646 ACCAGGTGAGCCTCTCTCTA 58.996 55.000 0.00 0.00 44.97 2.43
6103 9229 2.872858 GCAAACCCCTGAATATCGAGTC 59.127 50.000 0.00 0.00 0.00 3.36
6115 9241 0.743701 ATCGAGTCGTACCGTGCTCT 60.744 55.000 13.12 0.00 32.03 4.09
6299 9432 4.636249 GGGAGAAATGATCGTTAGCTGAT 58.364 43.478 0.00 0.00 0.00 2.90
6358 9497 9.921637 ATTATTAATTGTGTGGTTTGATTTCGT 57.078 25.926 0.00 0.00 0.00 3.85
6359 9498 9.751542 TTATTAATTGTGTGGTTTGATTTCGTT 57.248 25.926 0.00 0.00 0.00 3.85
6360 9499 7.687005 TTAATTGTGTGGTTTGATTTCGTTC 57.313 32.000 0.00 0.00 0.00 3.95
6361 9500 4.974368 TTGTGTGGTTTGATTTCGTTCT 57.026 36.364 0.00 0.00 0.00 3.01
6371 9510 0.596082 ATTTCGTTCTTTGGCACGGG 59.404 50.000 0.00 0.00 37.02 5.28
6412 9551 2.667318 GCATCGTGGTGTGTGACGG 61.667 63.158 0.00 0.00 36.23 4.79
6689 10001 2.104111 TCACAGAATGAACTGGTTCCGT 59.896 45.455 10.44 0.00 39.69 4.69
6709 10021 4.383770 CCGTAACTATTTCACACCCCTGAT 60.384 45.833 0.00 0.00 0.00 2.90
6726 10038 1.003118 TGATCCTTTTGTGTAGCGCCT 59.997 47.619 2.29 0.00 0.00 5.52
6938 10291 1.930656 CTCCTCCCCCACCATTGGT 60.931 63.158 1.37 1.37 42.10 3.67
7074 10427 0.340208 ACTCTCCTCCGATCCCCTTT 59.660 55.000 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.627863 TTTTATGTCTGCGCGCAATT 57.372 40.000 35.50 20.75 0.00 2.32
2 3 1.528807 CGATTTTATGTCTGCGCGCAA 60.529 47.619 35.50 21.57 0.00 4.85
3 4 0.026156 CGATTTTATGTCTGCGCGCA 59.974 50.000 34.12 34.12 0.00 6.09
5 6 0.650512 ACCGATTTTATGTCTGCGCG 59.349 50.000 0.00 0.00 0.00 6.86
7 8 1.257936 CCGACCGATTTTATGTCTGCG 59.742 52.381 0.00 0.00 0.00 5.18
8 9 1.003866 GCCGACCGATTTTATGTCTGC 60.004 52.381 0.00 0.00 33.30 4.26
9 10 1.257936 CGCCGACCGATTTTATGTCTG 59.742 52.381 0.00 0.00 40.02 3.51
10 11 1.567504 CGCCGACCGATTTTATGTCT 58.432 50.000 0.00 0.00 40.02 3.41
11 12 0.042448 GCGCCGACCGATTTTATGTC 60.042 55.000 0.00 0.00 40.02 3.06
12 13 0.741574 TGCGCCGACCGATTTTATGT 60.742 50.000 4.18 0.00 40.02 2.29
13 14 0.315869 GTGCGCCGACCGATTTTATG 60.316 55.000 4.18 0.00 40.02 1.90
14 15 0.461339 AGTGCGCCGACCGATTTTAT 60.461 50.000 4.18 0.00 40.02 1.40
15 16 1.079681 AGTGCGCCGACCGATTTTA 60.080 52.632 4.18 0.00 40.02 1.52
16 17 2.358247 AGTGCGCCGACCGATTTT 60.358 55.556 4.18 0.00 40.02 1.82
17 18 3.118454 CAGTGCGCCGACCGATTT 61.118 61.111 4.18 0.00 40.02 2.17
38 39 2.265467 TAGATTTGGGTCGGCAGGGC 62.265 60.000 0.00 0.00 0.00 5.19
39 40 0.254747 TTAGATTTGGGTCGGCAGGG 59.745 55.000 0.00 0.00 0.00 4.45
40 41 2.122783 TTTAGATTTGGGTCGGCAGG 57.877 50.000 0.00 0.00 0.00 4.85
41 42 3.343617 TCTTTTAGATTTGGGTCGGCAG 58.656 45.455 0.00 0.00 0.00 4.85
42 43 3.343617 CTCTTTTAGATTTGGGTCGGCA 58.656 45.455 0.00 0.00 0.00 5.69
43 44 2.683362 CCTCTTTTAGATTTGGGTCGGC 59.317 50.000 0.00 0.00 0.00 5.54
44 45 2.683362 GCCTCTTTTAGATTTGGGTCGG 59.317 50.000 0.00 0.00 0.00 4.79
45 46 2.683362 GGCCTCTTTTAGATTTGGGTCG 59.317 50.000 0.00 0.00 0.00 4.79
46 47 2.683362 CGGCCTCTTTTAGATTTGGGTC 59.317 50.000 0.00 0.00 0.00 4.46
47 48 2.620627 CCGGCCTCTTTTAGATTTGGGT 60.621 50.000 0.00 0.00 0.00 4.51
48 49 2.024414 CCGGCCTCTTTTAGATTTGGG 58.976 52.381 0.00 0.00 0.00 4.12
49 50 2.683362 GTCCGGCCTCTTTTAGATTTGG 59.317 50.000 0.00 0.00 0.00 3.28
50 51 2.351726 CGTCCGGCCTCTTTTAGATTTG 59.648 50.000 0.00 0.00 0.00 2.32
51 52 2.629051 CGTCCGGCCTCTTTTAGATTT 58.371 47.619 0.00 0.00 0.00 2.17
52 53 1.742750 GCGTCCGGCCTCTTTTAGATT 60.743 52.381 0.00 0.00 34.80 2.40
53 54 0.179081 GCGTCCGGCCTCTTTTAGAT 60.179 55.000 0.00 0.00 34.80 1.98
54 55 1.217244 GCGTCCGGCCTCTTTTAGA 59.783 57.895 0.00 0.00 34.80 2.10
55 56 3.795638 GCGTCCGGCCTCTTTTAG 58.204 61.111 0.00 0.00 34.80 1.85
82 83 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
83 84 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
85 86 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
86 87 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
87 88 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
88 89 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
89 90 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
90 91 1.472990 GTCCGCTTTTTGTCCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
91 92 0.028374 CGTCCGCTTTTTGTCCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
92 93 0.810823 TCGTCCGCTTTTTGTCCGTT 60.811 50.000 0.00 0.00 0.00 4.44
93 94 0.810823 TTCGTCCGCTTTTTGTCCGT 60.811 50.000 0.00 0.00 0.00 4.69
94 95 0.305313 TTTCGTCCGCTTTTTGTCCG 59.695 50.000 0.00 0.00 0.00 4.79
95 96 2.581637 GATTTCGTCCGCTTTTTGTCC 58.418 47.619 0.00 0.00 0.00 4.02
96 97 2.230864 CGATTTCGTCCGCTTTTTGTC 58.769 47.619 0.00 0.00 34.11 3.18
97 98 1.662026 GCGATTTCGTCCGCTTTTTGT 60.662 47.619 0.00 0.00 46.96 2.83
98 99 0.974836 GCGATTTCGTCCGCTTTTTG 59.025 50.000 0.00 0.00 46.96 2.44
99 100 3.378013 GCGATTTCGTCCGCTTTTT 57.622 47.368 0.00 0.00 46.96 1.94
108 109 1.665599 AAACGGACGGCGATTTCGT 60.666 52.632 16.62 14.37 44.03 3.85
109 110 1.225637 CAAACGGACGGCGATTTCG 60.226 57.895 16.62 13.70 43.27 3.46
110 111 1.133869 CCAAACGGACGGCGATTTC 59.866 57.895 16.62 0.00 0.00 2.17
111 112 2.329614 CCCAAACGGACGGCGATTT 61.330 57.895 16.62 5.62 0.00 2.17
112 113 2.744709 CCCAAACGGACGGCGATT 60.745 61.111 16.62 0.00 0.00 3.34
113 114 3.945304 GACCCAAACGGACGGCGAT 62.945 63.158 16.62 0.00 34.64 4.58
114 115 4.668118 GACCCAAACGGACGGCGA 62.668 66.667 16.62 0.00 34.64 5.54
129 130 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
130 131 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
131 132 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
132 133 0.613012 AAGAGCAACTCCAATGGGGC 60.613 55.000 0.00 0.00 36.21 5.80
133 134 2.290896 TGTAAGAGCAACTCCAATGGGG 60.291 50.000 0.00 0.00 38.37 4.96
134 135 3.071874 TGTAAGAGCAACTCCAATGGG 57.928 47.619 0.00 0.00 0.00 4.00
135 136 4.425577 GTTGTAAGAGCAACTCCAATGG 57.574 45.455 0.00 0.00 43.74 3.16
143 144 5.239525 ACATCAGGAAAGTTGTAAGAGCAAC 59.760 40.000 1.16 1.16 46.49 4.17
144 145 5.239306 CACATCAGGAAAGTTGTAAGAGCAA 59.761 40.000 0.00 0.00 0.00 3.91
145 146 4.756642 CACATCAGGAAAGTTGTAAGAGCA 59.243 41.667 0.00 0.00 0.00 4.26
146 147 4.997395 TCACATCAGGAAAGTTGTAAGAGC 59.003 41.667 0.00 0.00 0.00 4.09
147 148 6.226787 AGTCACATCAGGAAAGTTGTAAGAG 58.773 40.000 0.00 0.00 0.00 2.85
148 149 6.174720 AGTCACATCAGGAAAGTTGTAAGA 57.825 37.500 0.00 0.00 0.00 2.10
610 625 1.196012 GGTGGAGGGAGGAGTTACTG 58.804 60.000 0.00 0.00 0.00 2.74
642 657 1.419107 GCAGTAGGTAGCCGTTTCGC 61.419 60.000 0.00 0.00 0.00 4.70
643 658 0.172803 AGCAGTAGGTAGCCGTTTCG 59.827 55.000 0.00 0.00 0.00 3.46
744 767 1.287815 CAATGTGTGTGCCTGCCTG 59.712 57.895 0.00 0.00 0.00 4.85
746 769 1.286880 GACAATGTGTGTGCCTGCC 59.713 57.895 0.00 0.00 41.96 4.85
770 799 1.755380 CTACCCACTGCCTACCTGTAC 59.245 57.143 0.00 0.00 0.00 2.90
771 800 1.342674 CCTACCCACTGCCTACCTGTA 60.343 57.143 0.00 0.00 0.00 2.74
773 802 1.972660 GCCTACCCACTGCCTACCTG 61.973 65.000 0.00 0.00 0.00 4.00
774 803 1.689582 GCCTACCCACTGCCTACCT 60.690 63.158 0.00 0.00 0.00 3.08
775 804 0.398098 TAGCCTACCCACTGCCTACC 60.398 60.000 0.00 0.00 0.00 3.18
936 972 0.324830 AACGGAGGAGAAGAGAGGGG 60.325 60.000 0.00 0.00 0.00 4.79
938 974 1.478916 GGAAACGGAGGAGAAGAGAGG 59.521 57.143 0.00 0.00 0.00 3.69
943 996 3.075148 GGAAAAGGAAACGGAGGAGAAG 58.925 50.000 0.00 0.00 0.00 2.85
944 997 2.224695 GGGAAAAGGAAACGGAGGAGAA 60.225 50.000 0.00 0.00 0.00 2.87
947 1000 1.073284 CAGGGAAAAGGAAACGGAGGA 59.927 52.381 0.00 0.00 0.00 3.71
948 1001 1.534729 CAGGGAAAAGGAAACGGAGG 58.465 55.000 0.00 0.00 0.00 4.30
949 1002 0.881796 GCAGGGAAAAGGAAACGGAG 59.118 55.000 0.00 0.00 0.00 4.63
950 1003 0.476771 AGCAGGGAAAAGGAAACGGA 59.523 50.000 0.00 0.00 0.00 4.69
951 1004 2.194201 TAGCAGGGAAAAGGAAACGG 57.806 50.000 0.00 0.00 0.00 4.44
952 1005 7.876068 TGTATATATAGCAGGGAAAAGGAAACG 59.124 37.037 0.00 0.00 0.00 3.60
953 1006 9.000486 GTGTATATATAGCAGGGAAAAGGAAAC 58.000 37.037 0.00 0.00 0.00 2.78
1057 1110 1.074566 TCACTCTCCTCTGCACTCTGA 59.925 52.381 0.00 0.00 0.00 3.27
1070 1123 1.222936 CCCATGCCCACTCACTCTC 59.777 63.158 0.00 0.00 0.00 3.20
1071 1124 2.976490 GCCCATGCCCACTCACTCT 61.976 63.158 0.00 0.00 0.00 3.24
1575 1678 2.158623 TCTGCCTCTTCTTTGCCTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
1583 1686 0.695347 CCACCCTCTGCCTCTTCTTT 59.305 55.000 0.00 0.00 0.00 2.52
1832 1950 1.133482 AGGGTGTGGCAAAGCTTAGTT 60.133 47.619 6.84 0.00 0.00 2.24
1833 1951 0.478507 AGGGTGTGGCAAAGCTTAGT 59.521 50.000 6.84 0.00 0.00 2.24
1861 1979 2.738846 CACACAGTGGCACATCTTCTAC 59.261 50.000 21.41 0.00 44.52 2.59
1863 1981 1.141657 ACACACAGTGGCACATCTTCT 59.858 47.619 21.41 0.00 44.52 2.85
1864 1982 1.597742 ACACACAGTGGCACATCTTC 58.402 50.000 21.41 0.00 44.52 2.87
1865 1983 1.677576 CAACACACAGTGGCACATCTT 59.322 47.619 21.41 0.00 44.52 2.40
1868 1986 0.740149 CACAACACACAGTGGCACAT 59.260 50.000 21.41 4.27 44.52 3.21
1869 1987 1.932011 GCACAACACACAGTGGCACA 61.932 55.000 21.41 0.00 37.94 4.57
1871 1989 3.195683 GCACAACACACAGTGGCA 58.804 55.556 5.31 0.00 37.94 4.92
1873 1991 1.031571 AGTGGCACAACACACAGTGG 61.032 55.000 21.41 0.00 44.16 4.00
1874 1992 1.330521 GTAGTGGCACAACACACAGTG 59.669 52.381 21.41 0.00 44.16 3.66
1875 1993 1.663695 GTAGTGGCACAACACACAGT 58.336 50.000 21.41 0.00 44.16 3.55
1876 1994 0.944386 GGTAGTGGCACAACACACAG 59.056 55.000 21.41 0.00 44.16 3.66
1877 1995 0.253327 TGGTAGTGGCACAACACACA 59.747 50.000 21.41 11.10 44.16 3.72
1878 1996 1.384525 TTGGTAGTGGCACAACACAC 58.615 50.000 21.41 8.84 44.16 3.82
1879 1997 2.130272 TTTGGTAGTGGCACAACACA 57.870 45.000 21.41 10.13 44.16 3.72
1880 1998 2.350388 CGATTTGGTAGTGGCACAACAC 60.350 50.000 21.41 13.77 44.16 3.32
1881 1999 1.876799 CGATTTGGTAGTGGCACAACA 59.123 47.619 21.41 11.84 44.16 3.33
1882 2000 1.401018 GCGATTTGGTAGTGGCACAAC 60.401 52.381 21.41 9.20 44.16 3.32
1883 2001 0.878416 GCGATTTGGTAGTGGCACAA 59.122 50.000 21.41 5.00 44.16 3.33
1908 2026 3.445450 ACTCCTACTCACATGCACAGTAG 59.555 47.826 15.02 15.02 39.52 2.57
1955 2204 1.892862 CCGTTTTACCACCACGCCA 60.893 57.895 0.00 0.00 32.43 5.69
1957 2206 1.280444 CACCGTTTTACCACCACGC 59.720 57.895 0.00 0.00 32.43 5.34
1958 2207 1.161563 AGCACCGTTTTACCACCACG 61.162 55.000 0.00 0.00 0.00 4.94
1964 2213 1.205820 GACGCAGCACCGTTTTACC 59.794 57.895 3.20 0.00 42.24 2.85
1965 2214 1.154727 CGACGCAGCACCGTTTTAC 60.155 57.895 3.20 0.00 42.24 2.01
2000 2252 3.851128 GGTAGGCAGCCCTCGACC 61.851 72.222 8.22 7.26 41.75 4.79
2079 2331 5.864418 ATGGCCATGGCATTATCAATATC 57.136 39.130 36.56 15.83 46.61 1.63
2080 2332 6.269077 CCATATGGCCATGGCATTATCAATAT 59.731 38.462 36.56 21.41 46.61 1.28
2082 2334 4.407621 CCATATGGCCATGGCATTATCAAT 59.592 41.667 36.56 19.02 46.61 2.57
2083 2335 3.770388 CCATATGGCCATGGCATTATCAA 59.230 43.478 36.56 15.26 46.61 2.57
2084 2336 3.245694 ACCATATGGCCATGGCATTATCA 60.246 43.478 36.56 24.92 46.61 2.15
2116 2368 2.966309 CTTTTGAGCACGCCCCGAC 61.966 63.158 0.00 0.00 0.00 4.79
2154 2431 1.522580 GCTCACCTGCCGATTCCTC 60.523 63.158 0.00 0.00 0.00 3.71
2180 2457 9.265901 CCTTGTTCTGACCTGATAATATACTTG 57.734 37.037 0.00 0.00 0.00 3.16
2182 2459 7.445945 GCCTTGTTCTGACCTGATAATATACT 58.554 38.462 0.00 0.00 0.00 2.12
2183 2460 6.366332 CGCCTTGTTCTGACCTGATAATATAC 59.634 42.308 0.00 0.00 0.00 1.47
2184 2461 6.455647 CGCCTTGTTCTGACCTGATAATATA 58.544 40.000 0.00 0.00 0.00 0.86
2185 2462 5.300752 CGCCTTGTTCTGACCTGATAATAT 58.699 41.667 0.00 0.00 0.00 1.28
2220 2506 5.519722 AGTTCTAAACAACGCCATGAAAAG 58.480 37.500 0.00 0.00 0.00 2.27
2222 2508 5.992829 TCTAGTTCTAAACAACGCCATGAAA 59.007 36.000 0.00 0.00 0.00 2.69
2225 2511 4.929808 AGTCTAGTTCTAAACAACGCCATG 59.070 41.667 0.00 0.00 0.00 3.66
2230 2534 7.375106 TCCTCTAGTCTAGTTCTAAACAACG 57.625 40.000 6.77 0.00 0.00 4.10
2241 2545 5.378332 ACGCATACATTCCTCTAGTCTAGT 58.622 41.667 6.77 0.00 0.00 2.57
2244 2548 3.251245 CGACGCATACATTCCTCTAGTCT 59.749 47.826 0.00 0.00 0.00 3.24
2247 2551 3.003378 TGTCGACGCATACATTCCTCTAG 59.997 47.826 11.62 0.00 0.00 2.43
2250 2554 2.120232 CTGTCGACGCATACATTCCTC 58.880 52.381 11.62 0.00 0.00 3.71
2251 2555 1.749063 TCTGTCGACGCATACATTCCT 59.251 47.619 11.62 0.00 0.00 3.36
2253 2557 1.852895 GGTCTGTCGACGCATACATTC 59.147 52.381 11.62 0.00 41.16 2.67
2366 2693 3.812019 CCCCTCCGACTCGTCACG 61.812 72.222 0.00 0.00 0.00 4.35
2369 2696 1.152922 AGATCCCCTCCGACTCGTC 60.153 63.158 0.00 0.00 0.00 4.20
2379 2706 1.925285 TTGAATGCGGCAGATCCCCT 61.925 55.000 9.25 0.00 0.00 4.79
2540 2872 4.323843 CGCCTATCCGTCCGTCCG 62.324 72.222 0.00 0.00 0.00 4.79
2541 2873 4.642542 GCGCCTATCCGTCCGTCC 62.643 72.222 0.00 0.00 0.00 4.79
2542 2874 4.642542 GGCGCCTATCCGTCCGTC 62.643 72.222 22.15 0.00 0.00 4.79
2544 2876 4.647615 CAGGCGCCTATCCGTCCG 62.648 72.222 32.30 10.65 32.25 4.79
2545 2877 2.143594 CTACAGGCGCCTATCCGTCC 62.144 65.000 32.30 0.00 32.25 4.79
2546 2878 1.286260 CTACAGGCGCCTATCCGTC 59.714 63.158 32.30 0.00 0.00 4.79
2547 2879 2.857744 GCTACAGGCGCCTATCCGT 61.858 63.158 32.30 24.92 0.00 4.69
2548 2880 2.049063 GCTACAGGCGCCTATCCG 60.049 66.667 32.30 19.95 0.00 4.18
2549 2881 1.301009 GTGCTACAGGCGCCTATCC 60.301 63.158 32.30 17.95 44.87 2.59
2550 2882 4.345337 GTGCTACAGGCGCCTATC 57.655 61.111 32.30 18.20 44.87 2.08
2556 2888 3.894547 AAACGGGGTGCTACAGGCG 62.895 63.158 0.00 0.00 45.43 5.52
2557 2889 2.033602 AAACGGGGTGCTACAGGC 59.966 61.111 0.00 0.00 42.22 4.85
2558 2890 2.332654 GCAAACGGGGTGCTACAGG 61.333 63.158 0.53 0.00 39.00 4.00
2559 2891 3.263941 GCAAACGGGGTGCTACAG 58.736 61.111 0.53 0.00 39.00 2.74
2564 2896 2.281484 TCAGAGCAAACGGGGTGC 60.281 61.111 0.00 0.00 42.55 5.01
2565 2897 1.672356 CCTCAGAGCAAACGGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
2566 2898 2.113243 GACCTCAGAGCAAACGGGGT 62.113 60.000 0.00 0.00 0.00 4.95
2567 2899 1.376037 GACCTCAGAGCAAACGGGG 60.376 63.158 0.00 0.00 0.00 5.73
2568 2900 0.036010 ATGACCTCAGAGCAAACGGG 60.036 55.000 0.00 0.00 0.00 5.28
2713 3070 4.410555 GGAGGAGAGGTTATGAGGAAACAT 59.589 45.833 0.00 0.00 0.00 2.71
2783 4846 9.733556 ACACACAACATAATAACTCCATTTAGA 57.266 29.630 0.00 0.00 0.00 2.10
2784 4847 9.988350 GACACACAACATAATAACTCCATTTAG 57.012 33.333 0.00 0.00 0.00 1.85
2785 4848 9.508642 TGACACACAACATAATAACTCCATTTA 57.491 29.630 0.00 0.00 0.00 1.40
2786 4849 8.402798 TGACACACAACATAATAACTCCATTT 57.597 30.769 0.00 0.00 0.00 2.32
2856 4919 8.958119 TTCGGCTAACACATCTAAAATAATCT 57.042 30.769 0.00 0.00 0.00 2.40
2883 5378 3.791973 AGTCAGAAGAATGCTCCTACG 57.208 47.619 0.00 0.00 0.00 3.51
2997 5496 3.263425 CACCTGGGAGTTTCTTAGGCTTA 59.737 47.826 0.00 0.00 31.69 3.09
3030 5529 7.967890 CAATTATGCAGAAAGGAACCTTTTT 57.032 32.000 18.11 11.15 45.16 1.94
3127 5833 1.460743 TGCTCGCACGAGAAAAAGATG 59.539 47.619 23.33 0.00 44.53 2.90
3135 5841 1.698165 CTTTACTTGCTCGCACGAGA 58.302 50.000 23.33 6.21 44.53 4.04
3136 5842 0.093705 GCTTTACTTGCTCGCACGAG 59.906 55.000 15.50 15.50 44.56 4.18
3137 5843 1.289109 GGCTTTACTTGCTCGCACGA 61.289 55.000 2.23 0.00 0.00 4.35
3138 5844 1.132640 GGCTTTACTTGCTCGCACG 59.867 57.895 0.00 0.00 0.00 5.34
3139 5845 1.132640 CGGCTTTACTTGCTCGCAC 59.867 57.895 0.00 0.00 0.00 5.34
3140 5846 2.677003 GCGGCTTTACTTGCTCGCA 61.677 57.895 13.43 0.00 43.78 5.10
3141 5847 2.098489 GCGGCTTTACTTGCTCGC 59.902 61.111 0.00 0.00 40.53 5.03
3142 5848 0.179215 CTTGCGGCTTTACTTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
3143 5849 0.875059 ACTTGCGGCTTTACTTGCTC 59.125 50.000 0.00 0.00 0.00 4.26
3144 5850 2.178912 TACTTGCGGCTTTACTTGCT 57.821 45.000 0.00 0.00 0.00 3.91
3145 5851 2.981400 TTACTTGCGGCTTTACTTGC 57.019 45.000 0.00 0.00 0.00 4.01
3146 5852 4.675114 CAGTTTTACTTGCGGCTTTACTTG 59.325 41.667 0.00 0.00 0.00 3.16
3147 5853 4.261447 CCAGTTTTACTTGCGGCTTTACTT 60.261 41.667 0.00 0.00 0.00 2.24
3148 5854 3.252458 CCAGTTTTACTTGCGGCTTTACT 59.748 43.478 0.00 0.00 0.00 2.24
3149 5855 3.004002 ACCAGTTTTACTTGCGGCTTTAC 59.996 43.478 0.00 0.00 0.00 2.01
3150 5856 3.215975 ACCAGTTTTACTTGCGGCTTTA 58.784 40.909 0.00 0.00 0.00 1.85
3151 5857 2.028876 ACCAGTTTTACTTGCGGCTTT 58.971 42.857 0.00 0.00 0.00 3.51
3152 5858 1.687563 ACCAGTTTTACTTGCGGCTT 58.312 45.000 0.00 0.00 0.00 4.35
3153 5859 2.554370 TACCAGTTTTACTTGCGGCT 57.446 45.000 0.00 0.00 0.00 5.52
3154 5860 3.439129 AGATTACCAGTTTTACTTGCGGC 59.561 43.478 0.00 0.00 0.00 6.53
3155 5861 4.142687 CCAGATTACCAGTTTTACTTGCGG 60.143 45.833 0.00 0.00 0.00 5.69
3156 5862 4.693566 TCCAGATTACCAGTTTTACTTGCG 59.306 41.667 0.00 0.00 0.00 4.85
3207 5913 2.923020 GGCTGACAACTTTTTGTGTGTG 59.077 45.455 0.00 0.00 46.43 3.82
3213 5919 3.541996 AAAGGGGCTGACAACTTTTTG 57.458 42.857 0.00 0.00 38.83 2.44
3218 5924 1.075374 TGCATAAAGGGGCTGACAACT 59.925 47.619 0.00 0.00 0.00 3.16
3338 6044 4.119363 GCTCCTGCCCATGCCTCA 62.119 66.667 0.00 0.00 36.33 3.86
3688 6394 1.191425 TCAACGATCAAAACACGCTCG 59.809 47.619 0.00 0.00 35.56 5.03
3727 6433 0.602638 TAGCAGCACAAAGTGTCCCG 60.603 55.000 0.00 0.00 35.75 5.14
3755 6461 3.926058 AGGTTTGCGATACTTACCCAT 57.074 42.857 0.00 0.00 0.00 4.00
3762 6468 2.159142 CGGGAGTAAGGTTTGCGATACT 60.159 50.000 0.00 0.00 0.00 2.12
3771 6477 1.353022 TGAAATGGCGGGAGTAAGGTT 59.647 47.619 0.00 0.00 0.00 3.50
3777 6483 3.366052 AGTAAATGAAATGGCGGGAGT 57.634 42.857 0.00 0.00 0.00 3.85
3779 6485 4.082845 TCAAAGTAAATGAAATGGCGGGA 58.917 39.130 0.00 0.00 0.00 5.14
3780 6486 4.448537 TCAAAGTAAATGAAATGGCGGG 57.551 40.909 0.00 0.00 0.00 6.13
3781 6487 5.649557 TGATCAAAGTAAATGAAATGGCGG 58.350 37.500 0.00 0.00 0.00 6.13
3782 6488 7.213252 CTTGATCAAAGTAAATGAAATGGCG 57.787 36.000 9.88 0.00 0.00 5.69
4065 6780 8.910351 AAGGTCTTATATTAATGAACAGAGGC 57.090 34.615 0.00 0.00 0.00 4.70
4137 6852 5.010708 ACCAAATTCACAGTTATCCCCTT 57.989 39.130 0.00 0.00 0.00 3.95
4265 7006 2.643551 CGGTCAGTGAATAATGGGCTT 58.356 47.619 0.00 0.00 0.00 4.35
4713 7600 5.466819 AGTGTCAACATCAAATCATGCTTG 58.533 37.500 0.00 0.00 0.00 4.01
4864 7753 8.956533 AAACAAGGTTGTGCAAAATACTATTT 57.043 26.923 0.00 0.00 41.31 1.40
4983 7919 3.813166 TCTGGAAATCAAACTGTTCGGTC 59.187 43.478 0.00 0.00 0.00 4.79
5140 8081 8.080417 AGCGAAGAAGCAGAAATATAATACGTA 58.920 33.333 0.00 0.00 40.15 3.57
5141 8082 6.924060 AGCGAAGAAGCAGAAATATAATACGT 59.076 34.615 0.00 0.00 40.15 3.57
5142 8083 7.327275 AGAGCGAAGAAGCAGAAATATAATACG 59.673 37.037 0.00 0.00 40.15 3.06
5143 8084 8.527567 AGAGCGAAGAAGCAGAAATATAATAC 57.472 34.615 0.00 0.00 40.15 1.89
5190 8131 3.941483 AGCAGTAAACGGATGAGAATTGG 59.059 43.478 0.00 0.00 0.00 3.16
5201 8142 2.724977 TCAGACAGAGCAGTAAACGG 57.275 50.000 0.00 0.00 0.00 4.44
5260 8201 1.374252 ACAGGCCAAGAACTACGCG 60.374 57.895 5.01 3.53 0.00 6.01
5261 8202 1.912371 GCACAGGCCAAGAACTACGC 61.912 60.000 5.01 0.00 0.00 4.42
5302 8245 2.669300 AGTGTGCAGAGCAGATAGTG 57.331 50.000 0.00 0.00 40.08 2.74
5306 8249 2.783609 ATGAAGTGTGCAGAGCAGAT 57.216 45.000 0.00 0.00 40.08 2.90
5483 8431 2.635427 GCCCCATTCCCAAGTTGTTTTA 59.365 45.455 1.45 0.00 0.00 1.52
5544 8492 3.881089 CCCCGTTTTGTGAGGAATATACC 59.119 47.826 0.00 0.00 0.00 2.73
5552 8500 1.528309 ACAGCCCCGTTTTGTGAGG 60.528 57.895 0.00 0.00 0.00 3.86
5553 8501 1.654220 CACAGCCCCGTTTTGTGAG 59.346 57.895 0.00 0.00 43.68 3.51
5572 8521 5.196238 GCAATTGCACAAGCTAGTAAGCAG 61.196 45.833 25.36 0.00 45.61 4.24
5652 8602 2.572209 GCCCCCGGCTAAATAATGTA 57.428 50.000 0.00 0.00 46.69 2.29
5665 8615 2.976099 AAAAAGAGGAATGCCCCCG 58.024 52.632 0.00 0.00 34.66 5.73
5694 8644 2.037511 CACCACAGGATGCACCATTTTT 59.962 45.455 7.86 0.00 42.53 1.94
5695 8645 1.619827 CACCACAGGATGCACCATTTT 59.380 47.619 7.86 0.00 42.53 1.82
5696 8646 1.259609 CACCACAGGATGCACCATTT 58.740 50.000 7.86 0.00 42.53 2.32
5697 8647 1.252904 GCACCACAGGATGCACCATT 61.253 55.000 7.86 0.00 42.53 3.16
5782 8732 3.565482 TGCTTCTTTCACATTGTCCTCAC 59.435 43.478 0.00 0.00 0.00 3.51
5868 8854 6.780457 AATTCAGATACACCCAATGGAAAG 57.220 37.500 0.00 0.00 34.81 2.62
5878 8864 7.819900 AGGATAATTCGCTAATTCAGATACACC 59.180 37.037 0.00 0.00 36.67 4.16
5909 8895 5.689819 AGCAACAATCTTTTACAAGCTACG 58.310 37.500 0.00 0.00 0.00 3.51
5910 8896 7.138736 TCAAGCAACAATCTTTTACAAGCTAC 58.861 34.615 0.00 0.00 0.00 3.58
5912 8898 6.147864 TCAAGCAACAATCTTTTACAAGCT 57.852 33.333 0.00 0.00 0.00 3.74
5914 8900 8.697067 CAGATTCAAGCAACAATCTTTTACAAG 58.303 33.333 2.24 0.00 37.27 3.16
5915 8901 7.652909 CCAGATTCAAGCAACAATCTTTTACAA 59.347 33.333 2.24 0.00 37.27 2.41
5916 8902 7.147312 CCAGATTCAAGCAACAATCTTTTACA 58.853 34.615 2.24 0.00 37.27 2.41
5956 9061 2.615227 AATCCTGCATGGGACCGAGC 62.615 60.000 0.00 0.00 38.30 5.03
5961 9066 4.747810 CTTGTAAAAATCCTGCATGGGAC 58.252 43.478 0.00 0.00 38.30 4.46
6036 9141 0.602905 CACCTGGTCACCGGTTTCTC 60.603 60.000 2.97 0.00 30.53 2.87
6067 9177 2.419990 GGTTTGCAAGAAAAGTGGCCTT 60.420 45.455 3.32 0.00 0.00 4.35
6217 9345 3.895656 ACTCAGCCTACAAAGACTACACA 59.104 43.478 0.00 0.00 0.00 3.72
6299 9432 3.144657 TGGAACTACAGGACTCACGTA 57.855 47.619 0.00 0.00 0.00 3.57
6357 9496 1.007387 CTTGCCCGTGCCAAAGAAC 60.007 57.895 0.00 0.00 36.33 3.01
6358 9497 1.152860 TCTTGCCCGTGCCAAAGAA 60.153 52.632 0.00 0.00 36.33 2.52
6359 9498 1.600636 CTCTTGCCCGTGCCAAAGA 60.601 57.895 0.00 0.00 36.33 2.52
6360 9499 2.629656 CCTCTTGCCCGTGCCAAAG 61.630 63.158 0.00 0.00 36.33 2.77
6361 9500 2.424842 ATCCTCTTGCCCGTGCCAAA 62.425 55.000 0.00 0.00 36.33 3.28
6371 9510 3.136260 AGGATTTCTCTCCATCCTCTTGC 59.864 47.826 0.00 0.00 45.40 4.01
6412 9551 2.175878 ACACTGCACTCTGTGATTCC 57.824 50.000 10.48 0.00 42.56 3.01
6527 9836 2.564975 CTGAAAGCAAGCAGGGCG 59.435 61.111 0.00 0.00 36.08 6.13
6619 9931 3.561120 AATTTGCCGCCTCCGACCA 62.561 57.895 0.00 0.00 36.29 4.02
6689 10001 5.036916 AGGATCAGGGGTGTGAAATAGTTA 58.963 41.667 0.00 0.00 0.00 2.24
6709 10021 1.234615 GCAGGCGCTACACAAAAGGA 61.235 55.000 7.64 0.00 34.30 3.36
6759 10071 3.458163 CAACGCCCCGGAGCTAGA 61.458 66.667 6.33 0.00 0.00 2.43
7243 10596 9.547753 ACATGTCAATCTATGTATCCAAACTAC 57.452 33.333 0.00 0.00 35.86 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.