Multiple sequence alignment - TraesCS6D01G204600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G204600 chr6D 100.000 6762 0 0 2856 9617 290251740 290244979 0.000000e+00 12488.0
1 TraesCS6D01G204600 chr6D 100.000 2588 0 0 1 2588 290254595 290252008 0.000000e+00 4780.0
2 TraesCS6D01G204600 chr3D 98.845 3636 39 3 2856 6489 288117692 288114058 0.000000e+00 6479.0
3 TraesCS6D01G204600 chr3D 98.570 3636 49 3 2856 6490 429603650 429600017 0.000000e+00 6423.0
4 TraesCS6D01G204600 chr3D 98.296 3639 56 5 2856 6490 434016290 434019926 0.000000e+00 6372.0
5 TraesCS6D01G204600 chr3D 99.298 1282 9 0 1307 2588 46546749 46548030 0.000000e+00 2318.0
6 TraesCS6D01G204600 chr3D 99.298 1282 9 0 1307 2588 604645612 604644331 0.000000e+00 2318.0
7 TraesCS6D01G204600 chr3D 99.298 1282 8 1 1307 2588 297461381 297460101 0.000000e+00 2316.0
8 TraesCS6D01G204600 chr4D 98.543 3638 50 3 2856 6490 105303606 105299969 0.000000e+00 6421.0
9 TraesCS6D01G204600 chr4D 99.298 1282 9 0 1307 2588 419175860 419174579 0.000000e+00 2318.0
10 TraesCS6D01G204600 chr5D 98.487 3635 49 4 2856 6489 32706662 32703033 0.000000e+00 6403.0
11 TraesCS6D01G204600 chr5D 98.213 3638 55 4 2856 6492 91338726 91335098 0.000000e+00 6349.0
12 TraesCS6D01G204600 chr5D 99.298 1282 9 0 1307 2588 360032255 360030974 0.000000e+00 2318.0
13 TraesCS6D01G204600 chr5D 78.049 123 23 4 6701 6821 557050655 557050535 3.720000e-09 75.0
14 TraesCS6D01G204600 chr7D 98.405 3637 56 2 2856 6491 400858920 400862555 0.000000e+00 6394.0
15 TraesCS6D01G204600 chr7D 98.406 3638 52 5 2856 6489 608186496 608182861 0.000000e+00 6392.0
16 TraesCS6D01G204600 chr7D 99.454 1282 7 0 1307 2588 631241475 631242756 0.000000e+00 2329.0
17 TraesCS6D01G204600 chr7D 77.617 554 79 23 38 564 635810583 635811118 2.630000e-75 294.0
18 TraesCS6D01G204600 chr7D 87.143 70 7 2 1 68 449870953 449870884 2.880000e-10 78.7
19 TraesCS6D01G204600 chr2D 98.297 3641 54 6 2856 6489 73095285 73098924 0.000000e+00 6373.0
20 TraesCS6D01G204600 chr2D 99.298 1282 9 0 1307 2588 88401302 88400021 0.000000e+00 2318.0
21 TraesCS6D01G204600 chr2D 96.078 51 1 1 2 51 639722234 639722184 2.230000e-11 82.4
22 TraesCS6D01G204600 chr6A 97.010 3144 64 11 6490 9617 434531436 434534565 0.000000e+00 5258.0
23 TraesCS6D01G204600 chr6A 94.966 735 21 4 583 1304 434530707 434531438 0.000000e+00 1138.0
24 TraesCS6D01G204600 chr6B 96.535 2540 53 5 6490 9024 450805720 450808229 0.000000e+00 4170.0
25 TraesCS6D01G204600 chr6B 94.518 529 11 7 793 1304 450805195 450805722 0.000000e+00 800.0
26 TraesCS6D01G204600 chr6B 97.964 442 9 0 9176 9617 450799891 450799450 0.000000e+00 767.0
27 TraesCS6D01G204600 chr6B 86.186 333 25 13 248 571 450810082 450809762 3.330000e-89 340.0
28 TraesCS6D01G204600 chr6B 89.767 215 21 1 42 256 450810334 450810121 3.420000e-69 274.0
29 TraesCS6D01G204600 chr6B 95.833 48 0 2 2 49 174049374 174049419 1.040000e-09 76.8
30 TraesCS6D01G204600 chr6B 97.500 40 1 0 629 668 450805157 450805196 1.730000e-07 69.4
31 TraesCS6D01G204600 chr1D 99.299 1284 8 1 1305 2588 460321194 460319912 0.000000e+00 2320.0
32 TraesCS6D01G204600 chr1D 99.221 1284 10 0 1305 2588 488830893 488829610 0.000000e+00 2316.0
33 TraesCS6D01G204600 chr1D 85.586 111 16 0 6702 6812 248112271 248112161 6.100000e-22 117.0
34 TraesCS6D01G204600 chr1D 85.586 111 16 0 6702 6812 248202684 248202574 6.100000e-22 117.0
35 TraesCS6D01G204600 chr1D 75.481 208 41 5 6666 6865 4187853 4187648 1.030000e-14 93.5
36 TraesCS6D01G204600 chr1D 93.103 58 1 3 1 57 2231532 2231477 2.230000e-11 82.4
37 TraesCS6D01G204600 chr7A 74.622 926 186 35 8712 9607 711957087 711956181 7.100000e-96 363.0
38 TraesCS6D01G204600 chr1B 85.124 121 18 0 6656 6776 633613620 633613500 3.650000e-24 124.0
39 TraesCS6D01G204600 chr1B 83.929 112 18 0 6695 6806 329942425 329942536 3.670000e-19 108.0
40 TraesCS6D01G204600 chr1B 84.810 79 12 0 6698 6776 7038990 7038912 8.010000e-11 80.5
41 TraesCS6D01G204600 chr1A 83.898 118 19 0 6695 6812 299104208 299104325 7.890000e-21 113.0
42 TraesCS6D01G204600 chr5B 94.231 52 1 2 2 53 445873773 445873724 2.880000e-10 78.7
43 TraesCS6D01G204600 chr5A 92.727 55 2 2 2 55 550841147 550841200 2.880000e-10 78.7
44 TraesCS6D01G204600 chr4A 91.525 59 2 3 2 59 516924559 516924615 2.880000e-10 78.7
45 TraesCS6D01G204600 chr3B 89.831 59 5 1 2 59 64785700 64785642 3.720000e-09 75.0
46 TraesCS6D01G204600 chr2B 89.831 59 4 2 1 57 120724846 120724788 3.720000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G204600 chr6D 290244979 290254595 9616 True 8634.0 12488 100.000000 1 9617 2 chr6D.!!$R1 9616
1 TraesCS6D01G204600 chr3D 288114058 288117692 3634 True 6479.0 6479 98.845000 2856 6489 1 chr3D.!!$R1 3633
2 TraesCS6D01G204600 chr3D 429600017 429603650 3633 True 6423.0 6423 98.570000 2856 6490 1 chr3D.!!$R3 3634
3 TraesCS6D01G204600 chr3D 434016290 434019926 3636 False 6372.0 6372 98.296000 2856 6490 1 chr3D.!!$F2 3634
4 TraesCS6D01G204600 chr3D 46546749 46548030 1281 False 2318.0 2318 99.298000 1307 2588 1 chr3D.!!$F1 1281
5 TraesCS6D01G204600 chr3D 604644331 604645612 1281 True 2318.0 2318 99.298000 1307 2588 1 chr3D.!!$R4 1281
6 TraesCS6D01G204600 chr3D 297460101 297461381 1280 True 2316.0 2316 99.298000 1307 2588 1 chr3D.!!$R2 1281
7 TraesCS6D01G204600 chr4D 105299969 105303606 3637 True 6421.0 6421 98.543000 2856 6490 1 chr4D.!!$R1 3634
8 TraesCS6D01G204600 chr4D 419174579 419175860 1281 True 2318.0 2318 99.298000 1307 2588 1 chr4D.!!$R2 1281
9 TraesCS6D01G204600 chr5D 32703033 32706662 3629 True 6403.0 6403 98.487000 2856 6489 1 chr5D.!!$R1 3633
10 TraesCS6D01G204600 chr5D 91335098 91338726 3628 True 6349.0 6349 98.213000 2856 6492 1 chr5D.!!$R2 3636
11 TraesCS6D01G204600 chr5D 360030974 360032255 1281 True 2318.0 2318 99.298000 1307 2588 1 chr5D.!!$R3 1281
12 TraesCS6D01G204600 chr7D 400858920 400862555 3635 False 6394.0 6394 98.405000 2856 6491 1 chr7D.!!$F1 3635
13 TraesCS6D01G204600 chr7D 608182861 608186496 3635 True 6392.0 6392 98.406000 2856 6489 1 chr7D.!!$R2 3633
14 TraesCS6D01G204600 chr7D 631241475 631242756 1281 False 2329.0 2329 99.454000 1307 2588 1 chr7D.!!$F2 1281
15 TraesCS6D01G204600 chr7D 635810583 635811118 535 False 294.0 294 77.617000 38 564 1 chr7D.!!$F3 526
16 TraesCS6D01G204600 chr2D 73095285 73098924 3639 False 6373.0 6373 98.297000 2856 6489 1 chr2D.!!$F1 3633
17 TraesCS6D01G204600 chr2D 88400021 88401302 1281 True 2318.0 2318 99.298000 1307 2588 1 chr2D.!!$R1 1281
18 TraesCS6D01G204600 chr6A 434530707 434534565 3858 False 3198.0 5258 95.988000 583 9617 2 chr6A.!!$F1 9034
19 TraesCS6D01G204600 chr6B 450805157 450808229 3072 False 1679.8 4170 96.184333 629 9024 3 chr6B.!!$F2 8395
20 TraesCS6D01G204600 chr6B 450809762 450810334 572 True 307.0 340 87.976500 42 571 2 chr6B.!!$R2 529
21 TraesCS6D01G204600 chr1D 460319912 460321194 1282 True 2320.0 2320 99.299000 1305 2588 1 chr1D.!!$R5 1283
22 TraesCS6D01G204600 chr1D 488829610 488830893 1283 True 2316.0 2316 99.221000 1305 2588 1 chr1D.!!$R6 1283
23 TraesCS6D01G204600 chr7A 711956181 711957087 906 True 363.0 363 74.622000 8712 9607 1 chr7A.!!$R1 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.034896 GCGAGAGGTTGTCAAAGGGA 59.965 55.000 0.00 0.00 0.00 4.20 F
302 303 0.189822 GGGAGGTGCCTAGGAGAGAT 59.810 60.000 14.75 0.00 36.66 2.75 F
389 390 0.321122 GAGAATAGGAGGGGCATGCG 60.321 60.000 12.44 0.00 0.00 4.73 F
430 431 0.407528 TGAGGAGAGGAGTGTCTGCT 59.592 55.000 0.00 0.00 46.99 4.24 F
679 680 0.455005 CGGACGGTTCTCCTAACCTC 59.545 60.000 5.46 2.65 38.15 3.85 F
2156 2174 0.769247 AAAAGGGTTCACCGGTAGCT 59.231 50.000 6.87 0.00 46.96 3.32 F
3367 3386 0.487772 AGGTGGGTACTGGTGAGTCT 59.512 55.000 0.00 0.00 33.21 3.24 F
4543 4570 4.329545 TGGCGGCAGGAACTCCAC 62.330 66.667 7.97 0.00 34.60 4.02 F
5122 5150 0.671163 GCCGTCGGTGGTGTAATGAA 60.671 55.000 13.94 0.00 0.00 2.57 F
5696 5725 0.681733 TCAAAGTCTTCGCTGAGGCT 59.318 50.000 0.00 0.00 36.09 4.58 F
6638 6676 0.687354 GGAGAGAACTGCCCTTGTCA 59.313 55.000 0.00 0.00 0.00 3.58 F
7091 7141 0.828022 TGTACCCAGCCCAGAATACG 59.172 55.000 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1314 0.250901 TCAGCTTTCACTGGGCCTTC 60.251 55.000 4.53 0.00 38.26 3.46 R
1688 1706 3.041211 TGAGCAGGCCACTATTGTCTAT 58.959 45.455 5.01 0.00 0.00 1.98 R
1970 1988 8.913487 TTCTTCGGTATTTAAAAGGAACTCTT 57.087 30.769 0.00 0.00 38.49 2.85 R
2156 2174 9.199982 CCTGTCGATACTAGTTTTAAACTTTCA 57.800 33.333 15.83 2.00 42.81 2.69 R
3304 3323 1.537202 GCAGCCCCGATTAATGATCAC 59.463 52.381 0.00 0.00 34.23 3.06 R
3642 3668 1.198408 CATGTCACGTTTGCTGAGCAT 59.802 47.619 8.44 0.00 38.76 3.79 R
4732 4760 1.283321 GGCTCAACTTCCCTCTTCCAT 59.717 52.381 0.00 0.00 0.00 3.41 R
6133 6164 1.338655 TGACACAATCTCCGACGTCAA 59.661 47.619 17.16 1.59 30.88 3.18 R
6624 6662 1.457346 CATCCTGACAAGGGCAGTTC 58.543 55.000 0.00 0.00 44.62 3.01 R
7091 7141 2.156343 ACGAGTGCTTTCCTCAAGAC 57.844 50.000 0.00 0.00 33.80 3.01 R
8364 8435 0.035630 CAGCTGCAAGAACTAGGGCT 60.036 55.000 0.00 0.00 34.07 5.19 R
8810 8884 0.454600 CACAGGCTGGTCATCATTGC 59.545 55.000 20.34 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
36 37 5.310409 CCTCTAGGGCATATTTCCTTCAA 57.690 43.478 0.00 0.00 34.75 2.69
44 45 3.243168 GCATATTTCCTTCAATCGCAGCA 60.243 43.478 0.00 0.00 0.00 4.41
97 98 0.379669 ATACGAACGGGTCAGCTACG 59.620 55.000 0.00 0.00 0.00 3.51
111 112 0.462047 GCTACGTGGCTGGCACTAAT 60.462 55.000 28.26 17.40 0.00 1.73
112 113 1.571919 CTACGTGGCTGGCACTAATC 58.428 55.000 28.26 5.80 0.00 1.75
121 122 0.392461 TGGCACTAATCGAGGGTTGC 60.392 55.000 0.00 0.00 0.00 4.17
151 152 1.899437 GCACCTCCTGGACGGATTCA 61.899 60.000 16.09 0.00 42.12 2.57
152 153 0.176680 CACCTCCTGGACGGATTCAG 59.823 60.000 16.09 0.00 42.12 3.02
153 154 1.144936 CCTCCTGGACGGATTCAGC 59.855 63.158 6.39 0.00 42.12 4.26
154 155 1.333636 CCTCCTGGACGGATTCAGCT 61.334 60.000 6.39 0.00 42.12 4.24
155 156 1.403814 CTCCTGGACGGATTCAGCTA 58.596 55.000 0.00 0.00 42.12 3.32
156 157 1.067821 CTCCTGGACGGATTCAGCTAC 59.932 57.143 0.00 0.00 42.12 3.58
157 158 0.105039 CCTGGACGGATTCAGCTACC 59.895 60.000 0.00 0.00 33.16 3.18
158 159 0.105039 CTGGACGGATTCAGCTACCC 59.895 60.000 0.00 0.00 0.00 3.69
159 160 0.616395 TGGACGGATTCAGCTACCCA 60.616 55.000 0.00 0.00 0.00 4.51
160 161 0.105039 GGACGGATTCAGCTACCCAG 59.895 60.000 0.00 0.00 0.00 4.45
161 162 0.105039 GACGGATTCAGCTACCCAGG 59.895 60.000 0.00 0.00 0.00 4.45
162 163 0.325296 ACGGATTCAGCTACCCAGGA 60.325 55.000 0.00 0.00 0.00 3.86
163 164 1.051812 CGGATTCAGCTACCCAGGAT 58.948 55.000 0.00 0.00 0.00 3.24
164 165 1.270518 CGGATTCAGCTACCCAGGATG 60.271 57.143 0.00 0.00 0.00 3.51
165 166 1.544314 GGATTCAGCTACCCAGGATGC 60.544 57.143 0.00 0.00 31.97 3.91
166 167 1.419387 GATTCAGCTACCCAGGATGCT 59.581 52.381 0.00 0.00 36.04 3.79
167 168 2.174685 TTCAGCTACCCAGGATGCTA 57.825 50.000 7.60 0.00 34.10 3.49
168 169 1.709578 TCAGCTACCCAGGATGCTAG 58.290 55.000 7.60 0.00 34.10 3.42
169 170 1.217942 TCAGCTACCCAGGATGCTAGA 59.782 52.381 0.00 6.07 34.10 2.43
170 171 1.342819 CAGCTACCCAGGATGCTAGAC 59.657 57.143 0.00 0.00 34.10 2.59
171 172 0.682292 GCTACCCAGGATGCTAGACC 59.318 60.000 0.00 0.00 31.97 3.85
172 173 0.962489 CTACCCAGGATGCTAGACCG 59.038 60.000 0.00 0.00 31.97 4.79
173 174 0.469331 TACCCAGGATGCTAGACCGG 60.469 60.000 0.00 0.00 31.97 5.28
174 175 1.762460 CCCAGGATGCTAGACCGGT 60.762 63.158 6.92 6.92 31.97 5.28
175 176 1.443407 CCAGGATGCTAGACCGGTG 59.557 63.158 14.63 0.00 31.97 4.94
176 177 1.443407 CAGGATGCTAGACCGGTGG 59.557 63.158 14.63 2.61 0.00 4.61
177 178 1.762460 AGGATGCTAGACCGGTGGG 60.762 63.158 14.63 2.17 40.11 4.61
178 179 2.109181 GATGCTAGACCGGTGGGC 59.891 66.667 14.63 14.14 36.48 5.36
179 180 2.365635 ATGCTAGACCGGTGGGCT 60.366 61.111 14.63 5.47 46.67 5.19
180 181 2.650813 GATGCTAGACCGGTGGGCTG 62.651 65.000 14.63 0.00 43.53 4.85
181 182 4.162690 GCTAGACCGGTGGGCTGG 62.163 72.222 14.63 6.26 43.53 4.85
182 183 4.162690 CTAGACCGGTGGGCTGGC 62.163 72.222 14.63 0.00 43.53 4.85
183 184 4.715130 TAGACCGGTGGGCTGGCT 62.715 66.667 14.63 2.72 43.53 4.75
215 216 4.717629 CGGCGCGAGAGGTTGTCA 62.718 66.667 12.10 0.00 0.00 3.58
216 217 2.357034 GGCGCGAGAGGTTGTCAA 60.357 61.111 12.10 0.00 0.00 3.18
217 218 1.959226 GGCGCGAGAGGTTGTCAAA 60.959 57.895 12.10 0.00 0.00 2.69
218 219 1.493311 GCGCGAGAGGTTGTCAAAG 59.507 57.895 12.10 0.00 0.00 2.77
219 220 1.901650 GCGCGAGAGGTTGTCAAAGG 61.902 60.000 12.10 0.00 0.00 3.11
220 221 1.291877 CGCGAGAGGTTGTCAAAGGG 61.292 60.000 0.00 0.00 0.00 3.95
221 222 0.034896 GCGAGAGGTTGTCAAAGGGA 59.965 55.000 0.00 0.00 0.00 4.20
222 223 1.941668 GCGAGAGGTTGTCAAAGGGAG 60.942 57.143 0.00 0.00 0.00 4.30
223 224 1.618837 CGAGAGGTTGTCAAAGGGAGA 59.381 52.381 0.00 0.00 0.00 3.71
224 225 2.037251 CGAGAGGTTGTCAAAGGGAGAA 59.963 50.000 0.00 0.00 0.00 2.87
225 226 3.669536 GAGAGGTTGTCAAAGGGAGAAG 58.330 50.000 0.00 0.00 28.01 2.85
226 227 2.373502 AGAGGTTGTCAAAGGGAGAAGG 59.626 50.000 0.00 0.00 28.01 3.46
227 228 2.372172 GAGGTTGTCAAAGGGAGAAGGA 59.628 50.000 0.00 0.00 28.01 3.36
228 229 2.373502 AGGTTGTCAAAGGGAGAAGGAG 59.626 50.000 0.00 0.00 28.01 3.69
229 230 2.553247 GGTTGTCAAAGGGAGAAGGAGG 60.553 54.545 0.00 0.00 28.01 4.30
230 231 0.693049 TGTCAAAGGGAGAAGGAGGC 59.307 55.000 0.00 0.00 0.00 4.70
231 232 0.391793 GTCAAAGGGAGAAGGAGGCG 60.392 60.000 0.00 0.00 0.00 5.52
232 233 1.078143 CAAAGGGAGAAGGAGGCGG 60.078 63.158 0.00 0.00 0.00 6.13
233 234 2.301738 AAAGGGAGAAGGAGGCGGG 61.302 63.158 0.00 0.00 0.00 6.13
237 238 4.475135 GAGAAGGAGGCGGGCCAC 62.475 72.222 12.97 5.43 38.92 5.01
239 240 4.115199 GAAGGAGGCGGGCCACAT 62.115 66.667 12.97 0.00 38.92 3.21
240 241 4.115199 AAGGAGGCGGGCCACATC 62.115 66.667 12.97 0.00 38.92 3.06
252 253 2.981302 CACATCGTGGCAGGGAGA 59.019 61.111 7.42 0.00 0.00 3.71
253 254 1.153489 CACATCGTGGCAGGGAGAG 60.153 63.158 7.42 0.00 0.00 3.20
254 255 2.362369 ACATCGTGGCAGGGAGAGG 61.362 63.158 7.42 0.15 0.00 3.69
255 256 2.060383 CATCGTGGCAGGGAGAGGA 61.060 63.158 7.42 0.00 0.00 3.71
256 257 1.760086 ATCGTGGCAGGGAGAGGAG 60.760 63.158 7.42 0.00 0.00 3.69
257 258 4.154347 CGTGGCAGGGAGAGGAGC 62.154 72.222 0.00 0.00 0.00 4.70
258 259 4.154347 GTGGCAGGGAGAGGAGCG 62.154 72.222 0.00 0.00 0.00 5.03
288 289 2.519441 CATGGCATGGAGGGGAGG 59.481 66.667 19.80 0.00 0.00 4.30
289 290 2.045132 ATGGCATGGAGGGGAGGT 59.955 61.111 0.00 0.00 0.00 3.85
290 291 2.389449 ATGGCATGGAGGGGAGGTG 61.389 63.158 0.00 0.00 0.00 4.00
291 292 4.512914 GGCATGGAGGGGAGGTGC 62.513 72.222 0.00 0.00 35.17 5.01
292 293 4.512914 GCATGGAGGGGAGGTGCC 62.513 72.222 0.00 0.00 0.00 5.01
293 294 2.693864 CATGGAGGGGAGGTGCCT 60.694 66.667 0.00 0.00 36.66 4.75
294 295 1.384502 CATGGAGGGGAGGTGCCTA 60.385 63.158 0.00 0.00 36.66 3.93
295 296 1.074167 ATGGAGGGGAGGTGCCTAG 60.074 63.158 0.00 0.00 36.66 3.02
296 297 2.446802 GGAGGGGAGGTGCCTAGG 60.447 72.222 3.67 3.67 36.66 3.02
297 298 2.696893 GAGGGGAGGTGCCTAGGA 59.303 66.667 14.75 0.00 36.66 2.94
298 299 1.458588 GAGGGGAGGTGCCTAGGAG 60.459 68.421 14.75 0.00 36.66 3.69
299 300 1.941820 AGGGGAGGTGCCTAGGAGA 60.942 63.158 14.75 0.00 36.66 3.71
300 301 1.458588 GGGGAGGTGCCTAGGAGAG 60.459 68.421 14.75 0.00 36.66 3.20
301 302 1.621377 GGGAGGTGCCTAGGAGAGA 59.379 63.158 14.75 0.00 36.66 3.10
302 303 0.189822 GGGAGGTGCCTAGGAGAGAT 59.810 60.000 14.75 0.00 36.66 2.75
303 304 1.337118 GGAGGTGCCTAGGAGAGATG 58.663 60.000 14.75 0.00 0.00 2.90
304 305 1.337118 GAGGTGCCTAGGAGAGATGG 58.663 60.000 14.75 0.00 0.00 3.51
305 306 0.937441 AGGTGCCTAGGAGAGATGGA 59.063 55.000 14.75 0.00 0.00 3.41
306 307 1.133199 AGGTGCCTAGGAGAGATGGAG 60.133 57.143 14.75 0.00 0.00 3.86
307 308 1.337118 GTGCCTAGGAGAGATGGAGG 58.663 60.000 14.75 0.00 0.00 4.30
308 309 2.361189 GCCTAGGAGAGATGGAGGC 58.639 63.158 14.75 0.00 45.48 4.70
309 310 1.531739 GCCTAGGAGAGATGGAGGCG 61.532 65.000 14.75 0.00 43.05 5.52
310 311 0.897863 CCTAGGAGAGATGGAGGCGG 60.898 65.000 1.05 0.00 0.00 6.13
311 312 1.531739 CTAGGAGAGATGGAGGCGGC 61.532 65.000 0.00 0.00 0.00 6.53
312 313 4.292178 GGAGAGATGGAGGCGGCG 62.292 72.222 0.51 0.51 0.00 6.46
313 314 3.219928 GAGAGATGGAGGCGGCGA 61.220 66.667 12.98 0.00 0.00 5.54
314 315 3.492311 GAGAGATGGAGGCGGCGAC 62.492 68.421 12.98 8.50 0.00 5.19
332 333 4.408821 GCTGTGGCGGGGTGATGA 62.409 66.667 0.00 0.00 0.00 2.92
333 334 2.124983 CTGTGGCGGGGTGATGAG 60.125 66.667 0.00 0.00 0.00 2.90
334 335 2.606213 TGTGGCGGGGTGATGAGA 60.606 61.111 0.00 0.00 0.00 3.27
335 336 1.976132 CTGTGGCGGGGTGATGAGAT 61.976 60.000 0.00 0.00 0.00 2.75
336 337 1.524621 GTGGCGGGGTGATGAGATG 60.525 63.158 0.00 0.00 0.00 2.90
337 338 2.592861 GGCGGGGTGATGAGATGC 60.593 66.667 0.00 0.00 0.00 3.91
338 339 2.969238 GCGGGGTGATGAGATGCG 60.969 66.667 0.00 0.00 0.00 4.73
339 340 2.280389 CGGGGTGATGAGATGCGG 60.280 66.667 0.00 0.00 0.00 5.69
340 341 2.592861 GGGGTGATGAGATGCGGC 60.593 66.667 0.00 0.00 0.00 6.53
341 342 2.969238 GGGTGATGAGATGCGGCG 60.969 66.667 0.51 0.51 0.00 6.46
342 343 2.106938 GGTGATGAGATGCGGCGA 59.893 61.111 12.98 0.00 0.00 5.54
343 344 2.240500 GGTGATGAGATGCGGCGAC 61.241 63.158 12.98 2.02 0.00 5.19
344 345 1.519234 GTGATGAGATGCGGCGACA 60.519 57.895 12.98 9.05 0.00 4.35
345 346 1.519234 TGATGAGATGCGGCGACAC 60.519 57.895 12.98 0.00 0.00 3.67
346 347 2.202932 ATGAGATGCGGCGACACC 60.203 61.111 12.98 0.00 0.00 4.16
347 348 3.740128 ATGAGATGCGGCGACACCC 62.740 63.158 12.98 4.38 33.26 4.61
357 358 4.082523 CGACACCCGGTGGCTGAT 62.083 66.667 21.49 0.00 39.83 2.90
358 359 2.351276 GACACCCGGTGGCTGATT 59.649 61.111 21.77 0.00 38.75 2.57
359 360 2.034066 ACACCCGGTGGCTGATTG 59.966 61.111 21.77 0.00 37.94 2.67
360 361 2.751436 CACCCGGTGGCTGATTGG 60.751 66.667 9.99 0.00 33.59 3.16
361 362 4.740822 ACCCGGTGGCTGATTGGC 62.741 66.667 0.00 0.00 42.18 4.52
362 363 4.431131 CCCGGTGGCTGATTGGCT 62.431 66.667 0.00 0.00 42.34 4.75
363 364 3.136123 CCGGTGGCTGATTGGCTG 61.136 66.667 0.00 0.00 42.34 4.85
364 365 2.360350 CGGTGGCTGATTGGCTGT 60.360 61.111 0.00 0.00 42.34 4.40
365 366 2.693762 CGGTGGCTGATTGGCTGTG 61.694 63.158 0.00 0.00 42.34 3.66
366 367 1.604593 GGTGGCTGATTGGCTGTGT 60.605 57.895 0.00 0.00 42.34 3.72
367 368 1.582968 GTGGCTGATTGGCTGTGTG 59.417 57.895 0.00 0.00 42.34 3.82
368 369 1.604308 TGGCTGATTGGCTGTGTGG 60.604 57.895 0.00 0.00 42.34 4.17
369 370 1.303561 GGCTGATTGGCTGTGTGGA 60.304 57.895 0.00 0.00 38.32 4.02
370 371 1.310933 GGCTGATTGGCTGTGTGGAG 61.311 60.000 0.00 0.00 38.32 3.86
371 372 0.321919 GCTGATTGGCTGTGTGGAGA 60.322 55.000 0.00 0.00 0.00 3.71
372 373 1.735386 CTGATTGGCTGTGTGGAGAG 58.265 55.000 0.00 0.00 0.00 3.20
373 374 1.277273 CTGATTGGCTGTGTGGAGAGA 59.723 52.381 0.00 0.00 0.00 3.10
374 375 1.699083 TGATTGGCTGTGTGGAGAGAA 59.301 47.619 0.00 0.00 0.00 2.87
375 376 2.306805 TGATTGGCTGTGTGGAGAGAAT 59.693 45.455 0.00 0.00 0.00 2.40
376 377 3.519107 TGATTGGCTGTGTGGAGAGAATA 59.481 43.478 0.00 0.00 0.00 1.75
377 378 3.616956 TTGGCTGTGTGGAGAGAATAG 57.383 47.619 0.00 0.00 0.00 1.73
378 379 1.833630 TGGCTGTGTGGAGAGAATAGG 59.166 52.381 0.00 0.00 0.00 2.57
379 380 2.111384 GGCTGTGTGGAGAGAATAGGA 58.889 52.381 0.00 0.00 0.00 2.94
380 381 2.102252 GGCTGTGTGGAGAGAATAGGAG 59.898 54.545 0.00 0.00 0.00 3.69
381 382 2.102252 GCTGTGTGGAGAGAATAGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
382 383 2.697751 CTGTGTGGAGAGAATAGGAGGG 59.302 54.545 0.00 0.00 0.00 4.30
383 384 2.043227 GTGTGGAGAGAATAGGAGGGG 58.957 57.143 0.00 0.00 0.00 4.79
384 385 1.052617 GTGGAGAGAATAGGAGGGGC 58.947 60.000 0.00 0.00 0.00 5.80
385 386 0.642156 TGGAGAGAATAGGAGGGGCA 59.358 55.000 0.00 0.00 0.00 5.36
386 387 1.224120 TGGAGAGAATAGGAGGGGCAT 59.776 52.381 0.00 0.00 0.00 4.40
387 388 1.627834 GGAGAGAATAGGAGGGGCATG 59.372 57.143 0.00 0.00 0.00 4.06
388 389 1.003003 GAGAGAATAGGAGGGGCATGC 59.997 57.143 9.90 9.90 0.00 4.06
389 390 0.321122 GAGAATAGGAGGGGCATGCG 60.321 60.000 12.44 0.00 0.00 4.73
390 391 1.302832 GAATAGGAGGGGCATGCGG 60.303 63.158 12.44 0.00 0.00 5.69
391 392 1.768684 GAATAGGAGGGGCATGCGGA 61.769 60.000 12.44 0.00 0.00 5.54
392 393 1.772819 AATAGGAGGGGCATGCGGAG 61.773 60.000 12.44 0.00 0.00 4.63
414 415 2.433145 ATGCGGTGCGTGAGTGAG 60.433 61.111 0.00 0.00 0.00 3.51
415 416 3.939837 ATGCGGTGCGTGAGTGAGG 62.940 63.158 0.00 0.00 0.00 3.86
416 417 4.357947 GCGGTGCGTGAGTGAGGA 62.358 66.667 0.00 0.00 0.00 3.71
417 418 2.126307 CGGTGCGTGAGTGAGGAG 60.126 66.667 0.00 0.00 0.00 3.69
418 419 2.626780 CGGTGCGTGAGTGAGGAGA 61.627 63.158 0.00 0.00 0.00 3.71
419 420 1.214062 GGTGCGTGAGTGAGGAGAG 59.786 63.158 0.00 0.00 0.00 3.20
420 421 1.214062 GTGCGTGAGTGAGGAGAGG 59.786 63.158 0.00 0.00 0.00 3.69
421 422 1.074951 TGCGTGAGTGAGGAGAGGA 59.925 57.895 0.00 0.00 0.00 3.71
422 423 0.962855 TGCGTGAGTGAGGAGAGGAG 60.963 60.000 0.00 0.00 0.00 3.69
423 424 0.963355 GCGTGAGTGAGGAGAGGAGT 60.963 60.000 0.00 0.00 0.00 3.85
424 425 0.808125 CGTGAGTGAGGAGAGGAGTG 59.192 60.000 0.00 0.00 0.00 3.51
425 426 1.884497 CGTGAGTGAGGAGAGGAGTGT 60.884 57.143 0.00 0.00 0.00 3.55
426 427 1.816224 GTGAGTGAGGAGAGGAGTGTC 59.184 57.143 0.00 0.00 0.00 3.67
427 428 1.707989 TGAGTGAGGAGAGGAGTGTCT 59.292 52.381 0.00 0.00 0.00 3.41
428 429 2.091541 GAGTGAGGAGAGGAGTGTCTG 58.908 57.143 0.00 0.00 0.00 3.51
429 430 0.530288 GTGAGGAGAGGAGTGTCTGC 59.470 60.000 0.00 0.00 35.22 4.26
430 431 0.407528 TGAGGAGAGGAGTGTCTGCT 59.592 55.000 0.00 0.00 46.99 4.24
431 432 1.203112 TGAGGAGAGGAGTGTCTGCTT 60.203 52.381 0.00 0.00 44.59 3.91
432 433 1.899142 GAGGAGAGGAGTGTCTGCTTT 59.101 52.381 0.00 0.00 44.59 3.51
433 434 2.301583 GAGGAGAGGAGTGTCTGCTTTT 59.698 50.000 0.00 0.00 44.59 2.27
434 435 2.708325 AGGAGAGGAGTGTCTGCTTTTT 59.292 45.455 0.00 0.00 42.15 1.94
454 455 6.518208 TTTTTCGGTCAAGAAAAGGAGAAA 57.482 33.333 5.27 0.00 46.61 2.52
455 456 5.751243 TTTCGGTCAAGAAAAGGAGAAAG 57.249 39.130 0.00 0.00 37.20 2.62
456 457 3.740115 TCGGTCAAGAAAAGGAGAAAGG 58.260 45.455 0.00 0.00 0.00 3.11
457 458 3.389983 TCGGTCAAGAAAAGGAGAAAGGA 59.610 43.478 0.00 0.00 0.00 3.36
458 459 3.748568 CGGTCAAGAAAAGGAGAAAGGAG 59.251 47.826 0.00 0.00 0.00 3.69
459 460 3.504134 GGTCAAGAAAAGGAGAAAGGAGC 59.496 47.826 0.00 0.00 0.00 4.70
460 461 4.393834 GTCAAGAAAAGGAGAAAGGAGCT 58.606 43.478 0.00 0.00 0.00 4.09
461 462 4.215185 GTCAAGAAAAGGAGAAAGGAGCTG 59.785 45.833 0.00 0.00 0.00 4.24
462 463 2.789213 AGAAAAGGAGAAAGGAGCTGC 58.211 47.619 0.00 0.00 0.00 5.25
463 464 2.374839 AGAAAAGGAGAAAGGAGCTGCT 59.625 45.455 0.00 0.00 35.43 4.24
464 465 2.967745 AAAGGAGAAAGGAGCTGCTT 57.032 45.000 15.60 15.60 44.42 3.91
465 466 2.488204 AAGGAGAAAGGAGCTGCTTC 57.512 50.000 21.63 14.03 39.42 3.86
466 467 1.655372 AGGAGAAAGGAGCTGCTTCT 58.345 50.000 21.63 18.26 29.04 2.85
467 468 2.826488 AGGAGAAAGGAGCTGCTTCTA 58.174 47.619 21.63 0.00 29.04 2.10
468 469 3.383223 AGGAGAAAGGAGCTGCTTCTAT 58.617 45.455 21.63 9.93 29.04 1.98
469 470 4.551671 AGGAGAAAGGAGCTGCTTCTATA 58.448 43.478 21.63 0.00 29.04 1.31
470 471 5.154418 AGGAGAAAGGAGCTGCTTCTATAT 58.846 41.667 21.63 4.73 29.04 0.86
471 472 5.011943 AGGAGAAAGGAGCTGCTTCTATATG 59.988 44.000 21.63 0.00 29.04 1.78
472 473 5.221621 GGAGAAAGGAGCTGCTTCTATATGT 60.222 44.000 21.63 3.28 29.59 2.29
473 474 6.245890 AGAAAGGAGCTGCTTCTATATGTT 57.754 37.500 21.63 2.29 0.00 2.71
474 475 6.054295 AGAAAGGAGCTGCTTCTATATGTTG 58.946 40.000 21.63 0.00 0.00 3.33
475 476 5.620738 AAGGAGCTGCTTCTATATGTTGA 57.379 39.130 15.60 0.00 0.00 3.18
476 477 4.954875 AGGAGCTGCTTCTATATGTTGAC 58.045 43.478 9.17 0.00 0.00 3.18
477 478 4.406972 AGGAGCTGCTTCTATATGTTGACA 59.593 41.667 9.17 0.00 0.00 3.58
478 479 5.071519 AGGAGCTGCTTCTATATGTTGACAT 59.928 40.000 9.17 1.84 40.22 3.06
479 480 5.407995 GGAGCTGCTTCTATATGTTGACATC 59.592 44.000 2.53 0.00 37.76 3.06
480 481 5.922053 AGCTGCTTCTATATGTTGACATCA 58.078 37.500 0.00 0.00 37.76 3.07
481 482 6.351711 AGCTGCTTCTATATGTTGACATCAA 58.648 36.000 0.00 0.00 37.76 2.57
482 483 6.996879 AGCTGCTTCTATATGTTGACATCAAT 59.003 34.615 0.00 0.00 38.24 2.57
483 484 7.041303 AGCTGCTTCTATATGTTGACATCAATG 60.041 37.037 0.00 0.00 38.24 2.82
484 485 6.962686 TGCTTCTATATGTTGACATCAATGC 58.037 36.000 0.00 1.05 38.24 3.56
485 486 6.016860 TGCTTCTATATGTTGACATCAATGCC 60.017 38.462 0.00 0.00 38.24 4.40
486 487 6.016860 GCTTCTATATGTTGACATCAATGCCA 60.017 38.462 0.00 0.00 38.24 4.92
487 488 7.309012 GCTTCTATATGTTGACATCAATGCCAT 60.309 37.037 0.00 0.26 38.24 4.40
488 489 9.223099 CTTCTATATGTTGACATCAATGCCATA 57.777 33.333 0.00 2.40 38.24 2.74
489 490 9.743581 TTCTATATGTTGACATCAATGCCATAT 57.256 29.630 15.18 15.18 37.12 1.78
492 493 5.694231 TGTTGACATCAATGCCATATAGC 57.306 39.130 0.00 0.00 38.24 2.97
493 494 5.771165 ATGTTGACATCAATGCCATATAGCA 59.229 36.000 0.00 0.00 38.63 3.49
494 495 6.436218 ATGTTGACATCAATGCCATATAGCAT 59.564 34.615 2.48 2.48 43.42 3.79
495 496 7.612633 ATGTTGACATCAATGCCATATAGCATA 59.387 33.333 9.11 0.00 41.79 3.14
506 507 7.822161 TGCCATATAGCATAACAAGTCATTT 57.178 32.000 0.00 0.00 38.00 2.32
507 508 8.236585 TGCCATATAGCATAACAAGTCATTTT 57.763 30.769 0.00 0.00 38.00 1.82
508 509 8.694540 TGCCATATAGCATAACAAGTCATTTTT 58.305 29.630 0.00 0.00 38.00 1.94
537 538 9.927668 AGAAAAGTACCAACCAAATGATTTATG 57.072 29.630 0.00 0.00 0.00 1.90
538 539 9.705290 GAAAAGTACCAACCAAATGATTTATGT 57.295 29.630 0.00 0.00 0.00 2.29
539 540 9.487790 AAAAGTACCAACCAAATGATTTATGTG 57.512 29.630 0.00 0.00 0.00 3.21
540 541 7.775053 AGTACCAACCAAATGATTTATGTGT 57.225 32.000 0.00 0.00 0.00 3.72
541 542 8.871629 AGTACCAACCAAATGATTTATGTGTA 57.128 30.769 0.00 0.00 0.00 2.90
542 543 8.956426 AGTACCAACCAAATGATTTATGTGTAG 58.044 33.333 0.00 0.00 0.00 2.74
543 544 8.952278 GTACCAACCAAATGATTTATGTGTAGA 58.048 33.333 0.00 0.00 0.00 2.59
544 545 8.415950 ACCAACCAAATGATTTATGTGTAGAA 57.584 30.769 0.00 0.00 0.00 2.10
545 546 9.034800 ACCAACCAAATGATTTATGTGTAGAAT 57.965 29.630 0.00 0.00 0.00 2.40
546 547 9.874205 CCAACCAAATGATTTATGTGTAGAATT 57.126 29.630 0.00 0.00 0.00 2.17
571 572 9.770097 TTTAAAATTCACCAAAATCAGTATGCA 57.230 25.926 0.00 0.00 34.76 3.96
572 573 7.656707 AAAATTCACCAAAATCAGTATGCAC 57.343 32.000 0.00 0.00 34.76 4.57
573 574 6.594788 AATTCACCAAAATCAGTATGCACT 57.405 33.333 0.00 0.00 34.76 4.40
679 680 0.455005 CGGACGGTTCTCCTAACCTC 59.545 60.000 5.46 2.65 38.15 3.85
690 691 0.833949 CCTAACCTCCTTCTCAGCCC 59.166 60.000 0.00 0.00 0.00 5.19
876 882 6.032094 GGTAATTTAGACGTCGACTTCATCA 58.968 40.000 22.33 7.10 0.00 3.07
891 897 9.098355 TCGACTTCATCAATTAATCCTTACAAG 57.902 33.333 0.00 0.00 0.00 3.16
902 908 3.678056 TCCTTACAAGTCTTGACGCAT 57.322 42.857 19.53 0.00 0.00 4.73
934 940 2.169832 TGTTCAACAGACTAGGCAGC 57.830 50.000 0.00 0.00 0.00 5.25
973 979 3.769739 TTTTGAGAGTTGGCTAGCTCA 57.230 42.857 15.72 8.26 36.69 4.26
1067 1073 5.791336 TCAGTGAACTCTGTTGTCTACAT 57.209 39.130 0.00 0.00 35.85 2.29
1238 1256 1.617850 GGACTGGATCGATCAGATGCT 59.382 52.381 25.93 6.58 46.37 3.79
1688 1706 4.898320 AGACTGCTGATATGTTGTCACAA 58.102 39.130 0.00 0.00 36.16 3.33
1970 1988 6.823286 TTATTGAGGTGGAGACCATGATTA 57.177 37.500 0.00 0.00 45.98 1.75
2156 2174 0.769247 AAAAGGGTTCACCGGTAGCT 59.231 50.000 6.87 0.00 46.96 3.32
3304 3323 2.661866 GCCCTAGTACGCATGCGG 60.662 66.667 39.95 23.42 44.69 5.69
3367 3386 0.487772 AGGTGGGTACTGGTGAGTCT 59.512 55.000 0.00 0.00 33.21 3.24
3642 3668 5.298276 AGTGCGTTGTGAGAAAGGAAAAATA 59.702 36.000 0.00 0.00 0.00 1.40
4543 4570 4.329545 TGGCGGCAGGAACTCCAC 62.330 66.667 7.97 0.00 34.60 4.02
4732 4760 3.719924 TCGCGAAGTAAAAGAGGTTTGA 58.280 40.909 6.20 0.00 0.00 2.69
4979 5007 4.988716 AGGTGAGGGTGGCGTCGA 62.989 66.667 0.00 0.00 0.00 4.20
5122 5150 0.671163 GCCGTCGGTGGTGTAATGAA 60.671 55.000 13.94 0.00 0.00 2.57
5205 5233 3.391382 GGAGCACCAGTAGGCGGT 61.391 66.667 0.00 0.00 39.06 5.68
5696 5725 0.681733 TCAAAGTCTTCGCTGAGGCT 59.318 50.000 0.00 0.00 36.09 4.58
5698 5727 0.952984 AAAGTCTTCGCTGAGGCTGC 60.953 55.000 0.00 0.00 30.61 5.25
6133 6164 2.252945 AGAACTATGGGGATGTAGGGGT 59.747 50.000 0.00 0.00 0.00 4.95
6453 6490 6.296605 GGGATAGGGGTACAAAACTGACTTAA 60.297 42.308 0.00 0.00 0.00 1.85
6492 6529 5.962031 ACCATAATGACTACTCTAACACCCA 59.038 40.000 0.00 0.00 0.00 4.51
6624 6662 6.419413 GCTTCACATATACTTTTCGAGGAGAG 59.581 42.308 4.37 0.00 0.00 3.20
6638 6676 0.687354 GGAGAGAACTGCCCTTGTCA 59.313 55.000 0.00 0.00 0.00 3.58
6652 6690 2.307098 CCTTGTCAGGATGGAAGTTCCT 59.693 50.000 22.41 8.40 44.19 3.36
6883 6921 3.575687 ACCCCTCTGCAGAAAAGAAAATG 59.424 43.478 18.85 2.23 0.00 2.32
7031 7081 4.617959 TCTAGGTTTCTTGACTTGACGTG 58.382 43.478 0.00 0.00 0.00 4.49
7032 7082 3.261981 AGGTTTCTTGACTTGACGTGT 57.738 42.857 0.00 0.00 0.00 4.49
7033 7083 3.606687 AGGTTTCTTGACTTGACGTGTT 58.393 40.909 0.00 0.00 0.00 3.32
7034 7084 4.007659 AGGTTTCTTGACTTGACGTGTTT 58.992 39.130 0.00 0.00 0.00 2.83
7035 7085 4.457949 AGGTTTCTTGACTTGACGTGTTTT 59.542 37.500 0.00 0.00 0.00 2.43
7036 7086 5.644636 AGGTTTCTTGACTTGACGTGTTTTA 59.355 36.000 0.00 0.00 0.00 1.52
7037 7087 6.317893 AGGTTTCTTGACTTGACGTGTTTTAT 59.682 34.615 0.00 0.00 0.00 1.40
7038 7088 6.970613 GGTTTCTTGACTTGACGTGTTTTATT 59.029 34.615 0.00 0.00 0.00 1.40
7039 7089 7.486870 GGTTTCTTGACTTGACGTGTTTTATTT 59.513 33.333 0.00 0.00 0.00 1.40
7040 7090 9.493206 GTTTCTTGACTTGACGTGTTTTATTTA 57.507 29.630 0.00 0.00 0.00 1.40
7041 7091 9.710979 TTTCTTGACTTGACGTGTTTTATTTAG 57.289 29.630 0.00 0.00 0.00 1.85
7042 7092 8.428186 TCTTGACTTGACGTGTTTTATTTAGT 57.572 30.769 0.00 0.00 0.00 2.24
7043 7093 9.531942 TCTTGACTTGACGTGTTTTATTTAGTA 57.468 29.630 0.00 0.00 0.00 1.82
7044 7094 9.793245 CTTGACTTGACGTGTTTTATTTAGTAG 57.207 33.333 0.00 0.00 0.00 2.57
7045 7095 8.301730 TGACTTGACGTGTTTTATTTAGTAGG 57.698 34.615 0.00 0.00 0.00 3.18
7046 7096 8.143193 TGACTTGACGTGTTTTATTTAGTAGGA 58.857 33.333 0.00 0.00 0.00 2.94
7047 7097 8.891671 ACTTGACGTGTTTTATTTAGTAGGAA 57.108 30.769 0.00 0.00 0.00 3.36
7048 7098 9.328845 ACTTGACGTGTTTTATTTAGTAGGAAA 57.671 29.630 0.00 0.00 0.00 3.13
7091 7141 0.828022 TGTACCCAGCCCAGAATACG 59.172 55.000 0.00 0.00 0.00 3.06
7138 7188 8.020861 TGGTAGATATGTTTTGTTCAACGTAC 57.979 34.615 0.00 0.00 32.22 3.67
7597 7651 1.573857 TCCCTGGCTCTAGTATGACCA 59.426 52.381 0.00 0.00 0.00 4.02
7598 7652 2.180086 TCCCTGGCTCTAGTATGACCAT 59.820 50.000 0.00 0.00 0.00 3.55
7765 7827 5.416952 AGAAATTTCTCGACATCAGCCAATT 59.583 36.000 15.11 0.00 29.94 2.32
7932 7999 1.445582 CGGTCGGTGTTGAGTAGCC 60.446 63.158 0.00 0.00 0.00 3.93
8023 8090 2.409152 TGAATTTTTCGCAACGTCCC 57.591 45.000 0.00 0.00 0.00 4.46
8515 8586 5.244626 AGTTATGATGCTTTGTCTTTGCCTT 59.755 36.000 0.00 0.00 0.00 4.35
8530 8601 0.038801 GCCTTTGAGGTCTTGCTTGC 60.039 55.000 0.00 0.00 37.80 4.01
8573 8644 0.890683 GGTTGCACCATCAAGAAGGG 59.109 55.000 0.00 0.00 38.42 3.95
8574 8645 1.620822 GTTGCACCATCAAGAAGGGT 58.379 50.000 0.00 0.00 34.59 4.34
8614 8685 5.196695 GGATTGCTGAAAGACTTATCCCTT 58.803 41.667 2.19 0.00 34.07 3.95
8729 8800 3.418684 TGGAGGTAAAGAAACAGGAGC 57.581 47.619 0.00 0.00 0.00 4.70
8810 8884 2.880268 TGATTCAGCCTGTGTTCAACTG 59.120 45.455 0.00 0.00 32.47 3.16
8826 8900 0.330604 ACTGCAATGATGACCAGCCT 59.669 50.000 0.00 0.00 0.00 4.58
8843 8917 2.892334 CTGTGGGTTGCACCGTTCG 61.892 63.158 0.00 0.00 39.83 3.95
9033 9125 3.550950 AGAGTGCGATCTATGATCGTG 57.449 47.619 24.43 5.32 42.90 4.35
9054 9146 4.339247 GTGTTGGGTGATATTGAAGGGATG 59.661 45.833 0.00 0.00 0.00 3.51
9068 9166 2.511600 GATGGCTGGTCGTTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
9131 9229 7.998964 TCTTCCATCCTTCAAACTTTTAAGAGT 59.001 33.333 0.00 0.00 0.00 3.24
9132 9230 9.284968 CTTCCATCCTTCAAACTTTTAAGAGTA 57.715 33.333 0.00 0.00 0.00 2.59
9269 9367 2.093128 GGAAATCGGAGAACTAGGGCAA 60.093 50.000 0.00 0.00 43.58 4.52
9434 9533 7.246171 AGAAGTATCAACTGTTGGTGTCTAT 57.754 36.000 19.55 7.84 35.62 1.98
9609 9708 1.869767 GCCTATCACTTGATTGCCTCG 59.130 52.381 0.00 0.00 36.05 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
15 16 5.641209 CGATTGAAGGAAATATGCCCTAGAG 59.359 44.000 0.00 0.00 31.36 2.43
16 17 5.551233 CGATTGAAGGAAATATGCCCTAGA 58.449 41.667 0.00 0.00 31.36 2.43
17 18 4.154918 GCGATTGAAGGAAATATGCCCTAG 59.845 45.833 0.00 0.00 31.36 3.02
18 19 4.072131 GCGATTGAAGGAAATATGCCCTA 58.928 43.478 0.00 0.00 31.36 3.53
19 20 2.887152 GCGATTGAAGGAAATATGCCCT 59.113 45.455 0.00 0.00 0.00 5.19
20 21 2.622942 TGCGATTGAAGGAAATATGCCC 59.377 45.455 0.00 0.00 0.00 5.36
21 22 3.854784 GCTGCGATTGAAGGAAATATGCC 60.855 47.826 0.00 0.00 0.00 4.40
22 23 3.243168 TGCTGCGATTGAAGGAAATATGC 60.243 43.478 0.00 0.00 0.00 3.14
23 24 4.285292 GTGCTGCGATTGAAGGAAATATG 58.715 43.478 0.00 0.00 0.00 1.78
24 25 3.316308 GGTGCTGCGATTGAAGGAAATAT 59.684 43.478 0.00 0.00 0.00 1.28
25 26 2.682856 GGTGCTGCGATTGAAGGAAATA 59.317 45.455 0.00 0.00 0.00 1.40
26 27 1.474077 GGTGCTGCGATTGAAGGAAAT 59.526 47.619 0.00 0.00 0.00 2.17
27 28 0.881118 GGTGCTGCGATTGAAGGAAA 59.119 50.000 0.00 0.00 0.00 3.13
28 29 0.250684 TGGTGCTGCGATTGAAGGAA 60.251 50.000 0.00 0.00 0.00 3.36
29 30 0.955428 GTGGTGCTGCGATTGAAGGA 60.955 55.000 0.00 0.00 0.00 3.36
30 31 1.236616 TGTGGTGCTGCGATTGAAGG 61.237 55.000 0.00 0.00 0.00 3.46
31 32 0.110056 GTGTGGTGCTGCGATTGAAG 60.110 55.000 0.00 0.00 0.00 3.02
32 33 1.514678 GGTGTGGTGCTGCGATTGAA 61.515 55.000 0.00 0.00 0.00 2.69
33 34 1.965930 GGTGTGGTGCTGCGATTGA 60.966 57.895 0.00 0.00 0.00 2.57
34 35 2.260154 TGGTGTGGTGCTGCGATTG 61.260 57.895 0.00 0.00 0.00 2.67
35 36 2.112928 TGGTGTGGTGCTGCGATT 59.887 55.556 0.00 0.00 0.00 3.34
36 37 2.669569 GTGGTGTGGTGCTGCGAT 60.670 61.111 0.00 0.00 0.00 4.58
97 98 0.811616 CCTCGATTAGTGCCAGCCAC 60.812 60.000 0.00 0.00 45.01 5.01
151 152 1.710816 GTCTAGCATCCTGGGTAGCT 58.289 55.000 11.87 11.87 38.44 3.32
152 153 0.682292 GGTCTAGCATCCTGGGTAGC 59.318 60.000 0.00 0.00 38.44 3.58
153 154 0.962489 CGGTCTAGCATCCTGGGTAG 59.038 60.000 0.00 0.00 39.59 3.18
154 155 0.469331 CCGGTCTAGCATCCTGGGTA 60.469 60.000 0.00 0.00 0.00 3.69
155 156 1.762460 CCGGTCTAGCATCCTGGGT 60.762 63.158 0.00 0.00 0.00 4.51
156 157 1.762460 ACCGGTCTAGCATCCTGGG 60.762 63.158 0.00 0.00 0.00 4.45
157 158 1.443407 CACCGGTCTAGCATCCTGG 59.557 63.158 2.59 0.00 0.00 4.45
158 159 1.443407 CCACCGGTCTAGCATCCTG 59.557 63.158 2.59 0.00 0.00 3.86
159 160 1.762460 CCCACCGGTCTAGCATCCT 60.762 63.158 2.59 0.00 0.00 3.24
160 161 2.822399 CCCACCGGTCTAGCATCC 59.178 66.667 2.59 0.00 0.00 3.51
161 162 2.109181 GCCCACCGGTCTAGCATC 59.891 66.667 2.59 0.00 0.00 3.91
162 163 2.365635 AGCCCACCGGTCTAGCAT 60.366 61.111 19.18 4.95 0.00 3.79
163 164 3.390521 CAGCCCACCGGTCTAGCA 61.391 66.667 19.18 0.00 0.00 3.49
164 165 4.162690 CCAGCCCACCGGTCTAGC 62.163 72.222 2.59 8.20 0.00 3.42
165 166 4.162690 GCCAGCCCACCGGTCTAG 62.163 72.222 2.59 0.00 0.00 2.43
166 167 4.715130 AGCCAGCCCACCGGTCTA 62.715 66.667 2.59 0.00 0.00 2.59
198 199 4.717629 TGACAACCTCTCGCGCCG 62.718 66.667 0.00 0.00 0.00 6.46
199 200 1.901650 CTTTGACAACCTCTCGCGCC 61.902 60.000 0.00 0.00 0.00 6.53
200 201 1.493311 CTTTGACAACCTCTCGCGC 59.507 57.895 0.00 0.00 0.00 6.86
201 202 1.291877 CCCTTTGACAACCTCTCGCG 61.292 60.000 0.00 0.00 0.00 5.87
202 203 0.034896 TCCCTTTGACAACCTCTCGC 59.965 55.000 0.00 0.00 0.00 5.03
203 204 1.618837 TCTCCCTTTGACAACCTCTCG 59.381 52.381 0.00 0.00 0.00 4.04
204 205 3.558109 CCTTCTCCCTTTGACAACCTCTC 60.558 52.174 0.00 0.00 0.00 3.20
205 206 2.373502 CCTTCTCCCTTTGACAACCTCT 59.626 50.000 0.00 0.00 0.00 3.69
206 207 2.372172 TCCTTCTCCCTTTGACAACCTC 59.628 50.000 0.00 0.00 0.00 3.85
207 208 2.373502 CTCCTTCTCCCTTTGACAACCT 59.626 50.000 0.00 0.00 0.00 3.50
208 209 2.553247 CCTCCTTCTCCCTTTGACAACC 60.553 54.545 0.00 0.00 0.00 3.77
209 210 2.784347 CCTCCTTCTCCCTTTGACAAC 58.216 52.381 0.00 0.00 0.00 3.32
210 211 1.073923 GCCTCCTTCTCCCTTTGACAA 59.926 52.381 0.00 0.00 0.00 3.18
211 212 0.693049 GCCTCCTTCTCCCTTTGACA 59.307 55.000 0.00 0.00 0.00 3.58
212 213 0.391793 CGCCTCCTTCTCCCTTTGAC 60.392 60.000 0.00 0.00 0.00 3.18
213 214 1.553690 CCGCCTCCTTCTCCCTTTGA 61.554 60.000 0.00 0.00 0.00 2.69
214 215 1.078143 CCGCCTCCTTCTCCCTTTG 60.078 63.158 0.00 0.00 0.00 2.77
215 216 2.301738 CCCGCCTCCTTCTCCCTTT 61.302 63.158 0.00 0.00 0.00 3.11
216 217 2.689034 CCCGCCTCCTTCTCCCTT 60.689 66.667 0.00 0.00 0.00 3.95
220 221 4.475135 GTGGCCCGCCTCCTTCTC 62.475 72.222 7.35 0.00 36.94 2.87
222 223 4.115199 ATGTGGCCCGCCTCCTTC 62.115 66.667 7.35 0.00 36.94 3.46
223 224 4.115199 GATGTGGCCCGCCTCCTT 62.115 66.667 7.35 0.00 36.94 3.36
235 236 1.153489 CTCTCCCTGCCACGATGTG 60.153 63.158 0.00 0.00 0.00 3.21
236 237 2.362369 CCTCTCCCTGCCACGATGT 61.362 63.158 0.00 0.00 0.00 3.06
237 238 2.025767 CTCCTCTCCCTGCCACGATG 62.026 65.000 0.00 0.00 0.00 3.84
238 239 1.760086 CTCCTCTCCCTGCCACGAT 60.760 63.158 0.00 0.00 0.00 3.73
239 240 2.363018 CTCCTCTCCCTGCCACGA 60.363 66.667 0.00 0.00 0.00 4.35
240 241 4.154347 GCTCCTCTCCCTGCCACG 62.154 72.222 0.00 0.00 0.00 4.94
241 242 4.154347 CGCTCCTCTCCCTGCCAC 62.154 72.222 0.00 0.00 0.00 5.01
271 272 2.389449 ACCTCCCCTCCATGCCATG 61.389 63.158 0.00 0.00 0.00 3.66
272 273 2.045132 ACCTCCCCTCCATGCCAT 59.955 61.111 0.00 0.00 0.00 4.40
273 274 3.016971 CACCTCCCCTCCATGCCA 61.017 66.667 0.00 0.00 0.00 4.92
274 275 4.512914 GCACCTCCCCTCCATGCC 62.513 72.222 0.00 0.00 0.00 4.40
275 276 4.512914 GGCACCTCCCCTCCATGC 62.513 72.222 0.00 0.00 35.51 4.06
276 277 1.384502 TAGGCACCTCCCCTCCATG 60.385 63.158 0.00 0.00 33.88 3.66
277 278 1.074167 CTAGGCACCTCCCCTCCAT 60.074 63.158 0.00 0.00 33.88 3.41
278 279 2.368594 CTAGGCACCTCCCCTCCA 59.631 66.667 0.00 0.00 33.88 3.86
279 280 2.446802 CCTAGGCACCTCCCCTCC 60.447 72.222 0.00 0.00 33.88 4.30
280 281 1.458588 CTCCTAGGCACCTCCCCTC 60.459 68.421 2.96 0.00 33.88 4.30
281 282 1.941820 TCTCCTAGGCACCTCCCCT 60.942 63.158 2.96 0.00 36.47 4.79
282 283 1.458588 CTCTCCTAGGCACCTCCCC 60.459 68.421 2.96 0.00 34.51 4.81
283 284 0.189822 ATCTCTCCTAGGCACCTCCC 59.810 60.000 2.96 0.00 34.51 4.30
284 285 1.337118 CATCTCTCCTAGGCACCTCC 58.663 60.000 2.96 0.00 0.00 4.30
285 286 1.133325 TCCATCTCTCCTAGGCACCTC 60.133 57.143 2.96 0.00 0.00 3.85
286 287 0.937441 TCCATCTCTCCTAGGCACCT 59.063 55.000 2.96 0.00 0.00 4.00
287 288 1.337118 CTCCATCTCTCCTAGGCACC 58.663 60.000 2.96 0.00 0.00 5.01
288 289 1.337118 CCTCCATCTCTCCTAGGCAC 58.663 60.000 2.96 0.00 0.00 5.01
289 290 3.858886 CCTCCATCTCTCCTAGGCA 57.141 57.895 2.96 0.00 0.00 4.75
290 291 2.361189 GCCTCCATCTCTCCTAGGC 58.639 63.158 2.96 0.00 45.37 3.93
291 292 0.897863 CCGCCTCCATCTCTCCTAGG 60.898 65.000 0.82 0.82 0.00 3.02
292 293 1.531739 GCCGCCTCCATCTCTCCTAG 61.532 65.000 0.00 0.00 0.00 3.02
293 294 1.531840 GCCGCCTCCATCTCTCCTA 60.532 63.158 0.00 0.00 0.00 2.94
294 295 2.841988 GCCGCCTCCATCTCTCCT 60.842 66.667 0.00 0.00 0.00 3.69
295 296 4.292178 CGCCGCCTCCATCTCTCC 62.292 72.222 0.00 0.00 0.00 3.71
296 297 3.219928 TCGCCGCCTCCATCTCTC 61.220 66.667 0.00 0.00 0.00 3.20
297 298 3.532155 GTCGCCGCCTCCATCTCT 61.532 66.667 0.00 0.00 0.00 3.10
298 299 4.933064 CGTCGCCGCCTCCATCTC 62.933 72.222 0.00 0.00 0.00 2.75
315 316 4.408821 TCATCACCCCGCCACAGC 62.409 66.667 0.00 0.00 0.00 4.40
316 317 1.976132 ATCTCATCACCCCGCCACAG 61.976 60.000 0.00 0.00 0.00 3.66
317 318 1.995066 ATCTCATCACCCCGCCACA 60.995 57.895 0.00 0.00 0.00 4.17
318 319 1.524621 CATCTCATCACCCCGCCAC 60.525 63.158 0.00 0.00 0.00 5.01
319 320 2.910360 CATCTCATCACCCCGCCA 59.090 61.111 0.00 0.00 0.00 5.69
320 321 2.592861 GCATCTCATCACCCCGCC 60.593 66.667 0.00 0.00 0.00 6.13
321 322 2.969238 CGCATCTCATCACCCCGC 60.969 66.667 0.00 0.00 0.00 6.13
322 323 2.280389 CCGCATCTCATCACCCCG 60.280 66.667 0.00 0.00 0.00 5.73
323 324 2.592861 GCCGCATCTCATCACCCC 60.593 66.667 0.00 0.00 0.00 4.95
324 325 2.969238 CGCCGCATCTCATCACCC 60.969 66.667 0.00 0.00 0.00 4.61
325 326 2.106938 TCGCCGCATCTCATCACC 59.893 61.111 0.00 0.00 0.00 4.02
326 327 1.519234 TGTCGCCGCATCTCATCAC 60.519 57.895 0.00 0.00 0.00 3.06
327 328 1.519234 GTGTCGCCGCATCTCATCA 60.519 57.895 0.00 0.00 0.00 3.07
328 329 2.240500 GGTGTCGCCGCATCTCATC 61.241 63.158 0.00 0.00 0.00 2.92
329 330 2.202932 GGTGTCGCCGCATCTCAT 60.203 61.111 0.00 0.00 0.00 2.90
330 331 4.451150 GGGTGTCGCCGCATCTCA 62.451 66.667 0.00 0.00 38.44 3.27
344 345 4.740822 GCCAATCAGCCACCGGGT 62.741 66.667 6.32 0.00 36.17 5.28
345 346 4.431131 AGCCAATCAGCCACCGGG 62.431 66.667 6.32 0.00 37.18 5.73
346 347 3.136123 CAGCCAATCAGCCACCGG 61.136 66.667 0.00 0.00 0.00 5.28
347 348 2.360350 ACAGCCAATCAGCCACCG 60.360 61.111 0.00 0.00 0.00 4.94
348 349 1.604593 ACACAGCCAATCAGCCACC 60.605 57.895 0.00 0.00 0.00 4.61
349 350 1.582968 CACACAGCCAATCAGCCAC 59.417 57.895 0.00 0.00 0.00 5.01
350 351 1.604308 CCACACAGCCAATCAGCCA 60.604 57.895 0.00 0.00 0.00 4.75
351 352 1.303561 TCCACACAGCCAATCAGCC 60.304 57.895 0.00 0.00 0.00 4.85
352 353 0.321919 TCTCCACACAGCCAATCAGC 60.322 55.000 0.00 0.00 0.00 4.26
353 354 1.277273 TCTCTCCACACAGCCAATCAG 59.723 52.381 0.00 0.00 0.00 2.90
354 355 1.351076 TCTCTCCACACAGCCAATCA 58.649 50.000 0.00 0.00 0.00 2.57
355 356 2.479566 TTCTCTCCACACAGCCAATC 57.520 50.000 0.00 0.00 0.00 2.67
356 357 3.118112 CCTATTCTCTCCACACAGCCAAT 60.118 47.826 0.00 0.00 0.00 3.16
357 358 2.237143 CCTATTCTCTCCACACAGCCAA 59.763 50.000 0.00 0.00 0.00 4.52
358 359 1.833630 CCTATTCTCTCCACACAGCCA 59.166 52.381 0.00 0.00 0.00 4.75
359 360 2.102252 CTCCTATTCTCTCCACACAGCC 59.898 54.545 0.00 0.00 0.00 4.85
360 361 2.102252 CCTCCTATTCTCTCCACACAGC 59.898 54.545 0.00 0.00 0.00 4.40
361 362 2.697751 CCCTCCTATTCTCTCCACACAG 59.302 54.545 0.00 0.00 0.00 3.66
362 363 2.626950 CCCCTCCTATTCTCTCCACACA 60.627 54.545 0.00 0.00 0.00 3.72
363 364 2.043227 CCCCTCCTATTCTCTCCACAC 58.957 57.143 0.00 0.00 0.00 3.82
364 365 1.692762 GCCCCTCCTATTCTCTCCACA 60.693 57.143 0.00 0.00 0.00 4.17
365 366 1.052617 GCCCCTCCTATTCTCTCCAC 58.947 60.000 0.00 0.00 0.00 4.02
366 367 0.642156 TGCCCCTCCTATTCTCTCCA 59.358 55.000 0.00 0.00 0.00 3.86
367 368 1.627834 CATGCCCCTCCTATTCTCTCC 59.372 57.143 0.00 0.00 0.00 3.71
368 369 1.003003 GCATGCCCCTCCTATTCTCTC 59.997 57.143 6.36 0.00 0.00 3.20
369 370 1.063183 GCATGCCCCTCCTATTCTCT 58.937 55.000 6.36 0.00 0.00 3.10
370 371 0.321122 CGCATGCCCCTCCTATTCTC 60.321 60.000 13.15 0.00 0.00 2.87
371 372 1.757306 CGCATGCCCCTCCTATTCT 59.243 57.895 13.15 0.00 0.00 2.40
372 373 1.302832 CCGCATGCCCCTCCTATTC 60.303 63.158 13.15 0.00 0.00 1.75
373 374 1.770110 TCCGCATGCCCCTCCTATT 60.770 57.895 13.15 0.00 0.00 1.73
374 375 2.122413 TCCGCATGCCCCTCCTAT 60.122 61.111 13.15 0.00 0.00 2.57
375 376 2.844362 CTCCGCATGCCCCTCCTA 60.844 66.667 13.15 0.00 0.00 2.94
396 397 2.733671 CTCACTCACGCACCGCATG 61.734 63.158 0.00 0.00 0.00 4.06
397 398 2.433145 CTCACTCACGCACCGCAT 60.433 61.111 0.00 0.00 0.00 4.73
398 399 4.662961 CCTCACTCACGCACCGCA 62.663 66.667 0.00 0.00 0.00 5.69
399 400 4.357947 TCCTCACTCACGCACCGC 62.358 66.667 0.00 0.00 0.00 5.68
400 401 2.126307 CTCCTCACTCACGCACCG 60.126 66.667 0.00 0.00 0.00 4.94
401 402 1.214062 CTCTCCTCACTCACGCACC 59.786 63.158 0.00 0.00 0.00 5.01
402 403 1.214062 CCTCTCCTCACTCACGCAC 59.786 63.158 0.00 0.00 0.00 5.34
403 404 0.962855 CTCCTCTCCTCACTCACGCA 60.963 60.000 0.00 0.00 0.00 5.24
404 405 0.963355 ACTCCTCTCCTCACTCACGC 60.963 60.000 0.00 0.00 0.00 5.34
405 406 0.808125 CACTCCTCTCCTCACTCACG 59.192 60.000 0.00 0.00 0.00 4.35
406 407 1.816224 GACACTCCTCTCCTCACTCAC 59.184 57.143 0.00 0.00 0.00 3.51
407 408 1.707989 AGACACTCCTCTCCTCACTCA 59.292 52.381 0.00 0.00 0.00 3.41
408 409 2.091541 CAGACACTCCTCTCCTCACTC 58.908 57.143 0.00 0.00 0.00 3.51
409 410 1.890573 GCAGACACTCCTCTCCTCACT 60.891 57.143 0.00 0.00 0.00 3.41
410 411 0.530288 GCAGACACTCCTCTCCTCAC 59.470 60.000 0.00 0.00 0.00 3.51
411 412 0.407528 AGCAGACACTCCTCTCCTCA 59.592 55.000 0.00 0.00 0.00 3.86
412 413 1.555967 AAGCAGACACTCCTCTCCTC 58.444 55.000 0.00 0.00 0.00 3.71
413 414 2.022718 AAAGCAGACACTCCTCTCCT 57.977 50.000 0.00 0.00 0.00 3.69
414 415 2.849294 AAAAGCAGACACTCCTCTCC 57.151 50.000 0.00 0.00 0.00 3.71
431 432 6.405397 CCTTTCTCCTTTTCTTGACCGAAAAA 60.405 38.462 0.00 0.00 40.99 1.94
432 433 5.067283 CCTTTCTCCTTTTCTTGACCGAAAA 59.933 40.000 0.00 0.00 39.74 2.29
433 434 4.578928 CCTTTCTCCTTTTCTTGACCGAAA 59.421 41.667 0.00 0.00 0.00 3.46
434 435 4.134563 CCTTTCTCCTTTTCTTGACCGAA 58.865 43.478 0.00 0.00 0.00 4.30
435 436 3.389983 TCCTTTCTCCTTTTCTTGACCGA 59.610 43.478 0.00 0.00 0.00 4.69
436 437 3.740115 TCCTTTCTCCTTTTCTTGACCG 58.260 45.455 0.00 0.00 0.00 4.79
437 438 3.504134 GCTCCTTTCTCCTTTTCTTGACC 59.496 47.826 0.00 0.00 0.00 4.02
438 439 4.215185 CAGCTCCTTTCTCCTTTTCTTGAC 59.785 45.833 0.00 0.00 0.00 3.18
439 440 4.392940 CAGCTCCTTTCTCCTTTTCTTGA 58.607 43.478 0.00 0.00 0.00 3.02
440 441 3.057666 GCAGCTCCTTTCTCCTTTTCTTG 60.058 47.826 0.00 0.00 0.00 3.02
441 442 3.153130 GCAGCTCCTTTCTCCTTTTCTT 58.847 45.455 0.00 0.00 0.00 2.52
442 443 2.374839 AGCAGCTCCTTTCTCCTTTTCT 59.625 45.455 0.00 0.00 0.00 2.52
443 444 2.789213 AGCAGCTCCTTTCTCCTTTTC 58.211 47.619 0.00 0.00 0.00 2.29
444 445 2.967745 AGCAGCTCCTTTCTCCTTTT 57.032 45.000 0.00 0.00 0.00 2.27
445 446 2.374839 AGAAGCAGCTCCTTTCTCCTTT 59.625 45.455 0.00 0.00 0.00 3.11
446 447 1.984424 AGAAGCAGCTCCTTTCTCCTT 59.016 47.619 0.00 0.00 0.00 3.36
447 448 1.655372 AGAAGCAGCTCCTTTCTCCT 58.345 50.000 0.00 0.00 0.00 3.69
448 449 3.836365 ATAGAAGCAGCTCCTTTCTCC 57.164 47.619 0.00 0.00 0.00 3.71
449 450 5.852827 ACATATAGAAGCAGCTCCTTTCTC 58.147 41.667 0.00 0.00 0.00 2.87
450 451 5.885449 ACATATAGAAGCAGCTCCTTTCT 57.115 39.130 0.00 0.00 0.00 2.52
451 452 6.018343 GTCAACATATAGAAGCAGCTCCTTTC 60.018 42.308 0.00 0.00 0.00 2.62
452 453 5.819901 GTCAACATATAGAAGCAGCTCCTTT 59.180 40.000 0.00 0.00 0.00 3.11
453 454 5.104776 TGTCAACATATAGAAGCAGCTCCTT 60.105 40.000 0.00 0.00 0.00 3.36
454 455 4.406972 TGTCAACATATAGAAGCAGCTCCT 59.593 41.667 0.00 0.00 0.00 3.69
455 456 4.697514 TGTCAACATATAGAAGCAGCTCC 58.302 43.478 0.00 0.00 0.00 4.70
456 457 5.987953 TGATGTCAACATATAGAAGCAGCTC 59.012 40.000 0.00 0.00 36.57 4.09
457 458 5.922053 TGATGTCAACATATAGAAGCAGCT 58.078 37.500 0.00 0.00 36.57 4.24
458 459 6.609237 TTGATGTCAACATATAGAAGCAGC 57.391 37.500 0.00 0.00 36.57 5.25
459 460 7.076362 GCATTGATGTCAACATATAGAAGCAG 58.924 38.462 0.00 0.00 38.86 4.24
460 461 6.016860 GGCATTGATGTCAACATATAGAAGCA 60.017 38.462 0.00 0.00 38.86 3.91
461 462 6.016860 TGGCATTGATGTCAACATATAGAAGC 60.017 38.462 0.00 0.00 39.82 3.86
462 463 7.500720 TGGCATTGATGTCAACATATAGAAG 57.499 36.000 0.00 0.00 39.82 2.85
463 464 9.743581 ATATGGCATTGATGTCAACATATAGAA 57.256 29.630 4.78 0.00 46.52 2.10
466 467 9.112725 GCTATATGGCATTGATGTCAACATATA 57.887 33.333 4.78 15.94 46.52 0.86
467 468 7.612633 TGCTATATGGCATTGATGTCAACATAT 59.387 33.333 10.04 15.59 46.52 1.78
468 469 6.941436 TGCTATATGGCATTGATGTCAACATA 59.059 34.615 10.04 2.96 46.52 2.29
469 470 5.771165 TGCTATATGGCATTGATGTCAACAT 59.229 36.000 10.04 0.00 46.52 2.71
470 471 5.131784 TGCTATATGGCATTGATGTCAACA 58.868 37.500 10.04 0.00 46.52 3.33
471 472 5.694231 TGCTATATGGCATTGATGTCAAC 57.306 39.130 10.04 0.00 46.52 3.18
482 483 7.822161 AAATGACTTGTTATGCTATATGGCA 57.178 32.000 16.69 16.69 46.63 4.92
511 512 9.927668 CATAAATCATTTGGTTGGTACTTTTCT 57.072 29.630 0.00 0.00 0.00 2.52
512 513 9.705290 ACATAAATCATTTGGTTGGTACTTTTC 57.295 29.630 0.00 0.00 0.00 2.29
513 514 9.487790 CACATAAATCATTTGGTTGGTACTTTT 57.512 29.630 0.00 0.00 0.00 2.27
514 515 8.646900 ACACATAAATCATTTGGTTGGTACTTT 58.353 29.630 0.00 0.00 0.00 2.66
515 516 8.189119 ACACATAAATCATTTGGTTGGTACTT 57.811 30.769 0.00 0.00 0.00 2.24
516 517 7.775053 ACACATAAATCATTTGGTTGGTACT 57.225 32.000 0.00 0.00 0.00 2.73
517 518 8.952278 TCTACACATAAATCATTTGGTTGGTAC 58.048 33.333 0.00 0.00 0.00 3.34
518 519 9.521841 TTCTACACATAAATCATTTGGTTGGTA 57.478 29.630 0.00 0.00 0.00 3.25
519 520 8.415950 TTCTACACATAAATCATTTGGTTGGT 57.584 30.769 0.00 0.00 0.00 3.67
520 521 9.874205 AATTCTACACATAAATCATTTGGTTGG 57.126 29.630 0.00 0.00 0.00 3.77
545 546 9.770097 TGCATACTGATTTTGGTGAATTTTAAA 57.230 25.926 0.00 0.00 0.00 1.52
546 547 9.202273 GTGCATACTGATTTTGGTGAATTTTAA 57.798 29.630 0.00 0.00 0.00 1.52
547 548 8.584157 AGTGCATACTGATTTTGGTGAATTTTA 58.416 29.630 0.00 0.00 35.34 1.52
548 549 7.444299 AGTGCATACTGATTTTGGTGAATTTT 58.556 30.769 0.00 0.00 35.34 1.82
549 550 6.996509 AGTGCATACTGATTTTGGTGAATTT 58.003 32.000 0.00 0.00 35.34 1.82
550 551 6.594788 AGTGCATACTGATTTTGGTGAATT 57.405 33.333 0.00 0.00 35.34 2.17
564 565 6.491714 AACTGGATTCTATCAGTGCATACT 57.508 37.500 0.00 0.00 42.67 2.12
565 566 6.763135 TCAAACTGGATTCTATCAGTGCATAC 59.237 38.462 0.00 0.00 42.67 2.39
566 567 6.888105 TCAAACTGGATTCTATCAGTGCATA 58.112 36.000 0.00 0.00 42.67 3.14
567 568 5.748402 TCAAACTGGATTCTATCAGTGCAT 58.252 37.500 0.00 0.00 42.67 3.96
568 569 5.164620 TCAAACTGGATTCTATCAGTGCA 57.835 39.130 0.00 0.00 42.67 4.57
569 570 5.238214 GGATCAAACTGGATTCTATCAGTGC 59.762 44.000 0.00 0.00 42.67 4.40
570 571 5.464722 CGGATCAAACTGGATTCTATCAGTG 59.535 44.000 0.00 0.00 42.67 3.66
571 572 5.129485 ACGGATCAAACTGGATTCTATCAGT 59.871 40.000 0.00 0.00 45.06 3.41
572 573 5.605534 ACGGATCAAACTGGATTCTATCAG 58.394 41.667 0.00 0.00 37.07 2.90
573 574 5.453339 GGACGGATCAAACTGGATTCTATCA 60.453 44.000 0.00 0.00 0.00 2.15
574 575 4.991687 GGACGGATCAAACTGGATTCTATC 59.008 45.833 0.00 0.00 0.00 2.08
575 576 4.501571 CGGACGGATCAAACTGGATTCTAT 60.502 45.833 0.00 0.00 0.00 1.98
576 577 3.181479 CGGACGGATCAAACTGGATTCTA 60.181 47.826 0.00 0.00 0.00 2.10
577 578 2.418746 CGGACGGATCAAACTGGATTCT 60.419 50.000 0.00 0.00 0.00 2.40
578 579 1.933853 CGGACGGATCAAACTGGATTC 59.066 52.381 0.00 0.00 0.00 2.52
579 580 2.012051 GCGGACGGATCAAACTGGATT 61.012 52.381 0.00 0.00 0.00 3.01
580 581 0.462047 GCGGACGGATCAAACTGGAT 60.462 55.000 0.00 0.00 0.00 3.41
581 582 1.079405 GCGGACGGATCAAACTGGA 60.079 57.895 0.00 0.00 0.00 3.86
679 680 1.617839 AGGAAGGGGGCTGAGAAGG 60.618 63.158 0.00 0.00 0.00 3.46
690 691 1.098712 CGAGGAGACGAGAGGAAGGG 61.099 65.000 0.00 0.00 35.09 3.95
876 882 6.653320 TGCGTCAAGACTTGTAAGGATTAATT 59.347 34.615 14.75 0.00 28.70 1.40
891 897 6.124088 AGGAATTCATAAATGCGTCAAGAC 57.876 37.500 7.93 0.00 0.00 3.01
902 908 8.463930 AGTCTGTTGAACAAGGAATTCATAAA 57.536 30.769 7.93 0.00 36.02 1.40
1296 1314 0.250901 TCAGCTTTCACTGGGCCTTC 60.251 55.000 4.53 0.00 38.26 3.46
1688 1706 3.041211 TGAGCAGGCCACTATTGTCTAT 58.959 45.455 5.01 0.00 0.00 1.98
1970 1988 8.913487 TTCTTCGGTATTTAAAAGGAACTCTT 57.087 30.769 0.00 0.00 38.49 2.85
2156 2174 9.199982 CCTGTCGATACTAGTTTTAAACTTTCA 57.800 33.333 15.83 2.00 42.81 2.69
3304 3323 1.537202 GCAGCCCCGATTAATGATCAC 59.463 52.381 0.00 0.00 34.23 3.06
3367 3386 4.742201 GACTCTTCCGCTGCGCCA 62.742 66.667 18.00 1.62 0.00 5.69
3642 3668 1.198408 CATGTCACGTTTGCTGAGCAT 59.802 47.619 8.44 0.00 38.76 3.79
4543 4570 5.923684 GCTCCGGTGATCTTTATTCTCTTAG 59.076 44.000 7.92 0.00 0.00 2.18
4580 4607 1.617018 CCTGACCAAGGCCGAGATCA 61.617 60.000 0.00 0.00 39.93 2.92
4732 4760 1.283321 GGCTCAACTTCCCTCTTCCAT 59.717 52.381 0.00 0.00 0.00 3.41
4979 5007 3.323758 TATCCGCCGGCACTGCTTT 62.324 57.895 28.98 5.74 36.07 3.51
5122 5150 1.340248 CCCGACGTATGCTCCTTATGT 59.660 52.381 0.00 0.00 0.00 2.29
5696 5725 2.502213 AATCAATATCGTCGTCGGCA 57.498 45.000 1.55 0.00 37.69 5.69
5698 5727 3.604198 CAGCTAATCAATATCGTCGTCGG 59.396 47.826 1.55 0.00 37.69 4.79
6133 6164 1.338655 TGACACAATCTCCGACGTCAA 59.661 47.619 17.16 1.59 30.88 3.18
6453 6490 9.352191 AGTCATTATGGTATACGACTTCTAGTT 57.648 33.333 3.78 0.00 29.68 2.24
6492 6529 2.504899 CACACGCGTGCTCGATCT 60.505 61.111 37.35 14.96 39.71 2.75
6624 6662 1.457346 CATCCTGACAAGGGCAGTTC 58.543 55.000 0.00 0.00 44.62 3.01
6883 6921 4.384940 GCCTAGGATCAATCTTCAGGTTC 58.615 47.826 14.75 0.00 0.00 3.62
7045 7095 8.994170 TGGTTTATTTCCCGAAATTTCAATTTC 58.006 29.630 17.99 13.05 46.72 2.17
7046 7096 8.910351 TGGTTTATTTCCCGAAATTTCAATTT 57.090 26.923 17.99 0.00 40.99 1.82
7047 7097 8.945057 CATGGTTTATTTCCCGAAATTTCAATT 58.055 29.630 17.99 4.64 40.99 2.32
7048 7098 8.100164 ACATGGTTTATTTCCCGAAATTTCAAT 58.900 29.630 17.99 11.70 40.99 2.57
7091 7141 2.156343 ACGAGTGCTTTCCTCAAGAC 57.844 50.000 0.00 0.00 33.80 3.01
7138 7188 7.721402 AGTTCAGATGCCTAAGAAGTACATAG 58.279 38.462 0.00 0.00 0.00 2.23
7765 7827 4.099113 TGAAACAGAAAACATGCACCATCA 59.901 37.500 0.00 0.00 0.00 3.07
7773 7835 7.060979 CACGATAACCATGAAACAGAAAACATG 59.939 37.037 0.00 0.00 39.51 3.21
7903 7966 4.208686 CCGACCGAGCAGCTACCC 62.209 72.222 0.00 0.00 0.00 3.69
7932 7999 5.718649 ATCGGACGATTCACTGTTTAATG 57.281 39.130 0.65 0.00 0.00 1.90
8017 8084 6.942976 TCAAAAAGTAAGATATGAGGGACGT 58.057 36.000 0.00 0.00 0.00 4.34
8364 8435 0.035630 CAGCTGCAAGAACTAGGGCT 60.036 55.000 0.00 0.00 34.07 5.19
8515 8586 2.494059 GTACAGCAAGCAAGACCTCAA 58.506 47.619 0.00 0.00 0.00 3.02
8530 8601 3.366476 CCTCGAAAGACACTCAGGTACAG 60.366 52.174 0.00 0.00 35.39 2.74
8614 8685 6.938596 TGAGCTCTTCTTTCATCATCTTTTCA 59.061 34.615 16.19 0.00 0.00 2.69
8810 8884 0.454600 CACAGGCTGGTCATCATTGC 59.545 55.000 20.34 0.00 0.00 3.56
8843 8917 3.829886 TGAAATCAAGAATCACACCGC 57.170 42.857 0.00 0.00 0.00 5.68
9033 9125 3.891366 CCATCCCTTCAATATCACCCAAC 59.109 47.826 0.00 0.00 0.00 3.77
9068 9166 5.296780 TCGATTTTTCCAGATAATGTGAGGC 59.703 40.000 0.00 0.00 0.00 4.70
9131 9229 9.877222 TGATAAGTACCTTCCAGATCAAGTATA 57.123 33.333 0.00 0.00 0.00 1.47
9132 9230 8.783660 TGATAAGTACCTTCCAGATCAAGTAT 57.216 34.615 0.00 0.00 0.00 2.12
9269 9367 2.307098 CCTCAAATTCAGGGTCTCCAGT 59.693 50.000 0.00 0.00 34.83 4.00
9434 9533 6.108687 CACTGAATCAATTGACCTGCTACTA 58.891 40.000 11.07 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.