Multiple sequence alignment - TraesCS6D01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G203600 chr6D 100.000 3353 0 0 1 3353 288542826 288539474 0.000000e+00 6192.0
1 TraesCS6D01G203600 chr6A 95.983 1892 45 6 508 2388 437020725 437022596 0.000000e+00 3044.0
2 TraesCS6D01G203600 chr6A 84.661 502 43 13 2682 3173 437022595 437023072 1.410000e-128 470.0
3 TraesCS6D01G203600 chr6A 100.000 44 0 0 452 495 437020701 437020744 7.710000e-12 82.4
4 TraesCS6D01G203600 chr6B 95.822 1891 51 12 508 2388 448668772 448666900 0.000000e+00 3029.0
5 TraesCS6D01G203600 chr6B 81.425 393 42 15 2792 3176 448666597 448666228 3.270000e-75 292.0
6 TraesCS6D01G203600 chr6B 89.116 147 11 4 3209 3352 448666227 448666083 9.560000e-41 178.0
7 TraesCS6D01G203600 chr6B 89.844 128 10 2 376 501 448668872 448668746 9.630000e-36 161.0
8 TraesCS6D01G203600 chr6B 94.915 59 2 1 2682 2739 448666901 448666843 1.280000e-14 91.6
9 TraesCS6D01G203600 chr6B 85.915 71 10 0 1 71 134211421 134211491 3.590000e-10 76.8
10 TraesCS6D01G203600 chr2A 84.207 1336 191 15 1032 2354 600529951 600528623 0.000000e+00 1280.0
11 TraesCS6D01G203600 chr2A 94.138 290 14 1 2386 2675 759891923 759891637 3.970000e-119 438.0
12 TraesCS6D01G203600 chr2B 83.607 1342 194 18 1032 2354 538012152 538010818 0.000000e+00 1236.0
13 TraesCS6D01G203600 chr2D 83.531 1348 190 19 1032 2354 457255782 457254442 0.000000e+00 1230.0
14 TraesCS6D01G203600 chr2D 96.140 285 11 0 2388 2672 409529503 409529219 1.820000e-127 466.0
15 TraesCS6D01G203600 chr2D 93.857 293 17 1 2386 2677 66093081 66092789 1.100000e-119 440.0
16 TraesCS6D01G203600 chrUn 88.740 373 38 4 1166 1536 479365935 479365565 1.420000e-123 453.0
17 TraesCS6D01G203600 chr3D 93.793 290 18 0 2388 2677 395050335 395050624 1.430000e-118 436.0
18 TraesCS6D01G203600 chr3D 92.182 307 21 3 2380 2685 125505465 125505769 6.650000e-117 431.0
19 TraesCS6D01G203600 chr3D 100.000 33 0 0 3121 3153 167774551 167774519 1.000000e-05 62.1
20 TraesCS6D01G203600 chr7D 93.750 288 18 0 2388 2675 531437574 531437287 1.850000e-117 433.0
21 TraesCS6D01G203600 chr7D 93.151 292 20 0 2381 2672 487297720 487298011 2.390000e-116 429.0
22 TraesCS6D01G203600 chr7D 93.151 292 20 0 2381 2672 487301805 487302096 2.390000e-116 429.0
23 TraesCS6D01G203600 chr7D 93.151 292 20 0 2381 2672 487310735 487311026 2.390000e-116 429.0
24 TraesCS6D01G203600 chr7D 76.364 550 88 24 1033 1545 114818036 114818580 1.190000e-64 257.0
25 TraesCS6D01G203600 chr7D 78.512 121 21 3 3045 3164 15435223 15435339 1.290000e-09 75.0
26 TraesCS6D01G203600 chr1B 77.040 527 99 18 1033 1545 632634817 632634299 1.970000e-72 283.0
27 TraesCS6D01G203600 chr7B 76.697 545 90 25 1033 1545 74299812 74300351 5.510000e-68 268.0
28 TraesCS6D01G203600 chr7B 87.838 74 9 0 5 78 379778858 379778785 1.660000e-13 87.9
29 TraesCS6D01G203600 chr7B 77.692 130 27 2 23 151 522139738 522139610 9.970000e-11 78.7
30 TraesCS6D01G203600 chr1A 75.665 526 105 18 1034 1545 551680517 551680001 1.200000e-59 241.0
31 TraesCS6D01G203600 chr1A 77.358 106 18 6 3054 3153 339916426 339916321 1.300000e-04 58.4
32 TraesCS6D01G203600 chr5A 94.000 50 3 0 22 71 466578250 466578201 3.590000e-10 76.8
33 TraesCS6D01G203600 chr5B 94.595 37 2 0 119 155 94670931 94670895 1.300000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G203600 chr6D 288539474 288542826 3352 True 6192.00 6192 100.0000 1 3353 1 chr6D.!!$R1 3352
1 TraesCS6D01G203600 chr6A 437020701 437023072 2371 False 1198.80 3044 93.5480 452 3173 3 chr6A.!!$F1 2721
2 TraesCS6D01G203600 chr6B 448666083 448668872 2789 True 750.32 3029 90.2244 376 3352 5 chr6B.!!$R1 2976
3 TraesCS6D01G203600 chr2A 600528623 600529951 1328 True 1280.00 1280 84.2070 1032 2354 1 chr2A.!!$R1 1322
4 TraesCS6D01G203600 chr2B 538010818 538012152 1334 True 1236.00 1236 83.6070 1032 2354 1 chr2B.!!$R1 1322
5 TraesCS6D01G203600 chr2D 457254442 457255782 1340 True 1230.00 1230 83.5310 1032 2354 1 chr2D.!!$R3 1322
6 TraesCS6D01G203600 chr7D 487297720 487302096 4376 False 429.00 429 93.1510 2381 2672 2 chr7D.!!$F4 291
7 TraesCS6D01G203600 chr7D 114818036 114818580 544 False 257.00 257 76.3640 1033 1545 1 chr7D.!!$F2 512
8 TraesCS6D01G203600 chr1B 632634299 632634817 518 True 283.00 283 77.0400 1033 1545 1 chr1B.!!$R1 512
9 TraesCS6D01G203600 chr7B 74299812 74300351 539 False 268.00 268 76.6970 1033 1545 1 chr7B.!!$F1 512
10 TraesCS6D01G203600 chr1A 551680001 551680517 516 True 241.00 241 75.6650 1034 1545 1 chr1A.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.031585 CCGTTCTGGTCTGACGTCAA 59.968 55.0 20.49 7.97 0.00 3.18 F
405 406 0.038166 ACCCACGACAGATGGCAAAT 59.962 50.0 0.00 0.00 35.74 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 2375 2.813754 CCCACACATCGAACACATTCTT 59.186 45.455 0.00 0.0 32.12 2.52 R
2403 2481 7.442656 GGCATGTTACTAGTCCATGTTACTAT 58.557 38.462 24.95 0.0 38.53 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.716006 CAGACGTGTGGCGCTTGG 61.716 66.667 7.64 0.00 46.11 3.61
18 19 4.988598 AGACGTGTGGCGCTTGGG 62.989 66.667 7.64 0.00 46.11 4.12
29 30 2.349755 GCTTGGGGTGCCGAAGTA 59.650 61.111 0.00 0.00 40.65 2.24
30 31 1.745489 GCTTGGGGTGCCGAAGTAG 60.745 63.158 0.00 0.00 40.65 2.57
31 32 1.745489 CTTGGGGTGCCGAAGTAGC 60.745 63.158 0.00 0.00 35.17 3.58
32 33 2.185310 CTTGGGGTGCCGAAGTAGCT 62.185 60.000 0.00 0.00 35.17 3.32
33 34 1.774894 TTGGGGTGCCGAAGTAGCTT 61.775 55.000 0.00 0.00 0.00 3.74
34 35 1.002502 GGGGTGCCGAAGTAGCTTT 60.003 57.895 0.00 0.00 0.00 3.51
35 36 1.025113 GGGGTGCCGAAGTAGCTTTC 61.025 60.000 0.00 0.00 0.00 2.62
36 37 0.036294 GGGTGCCGAAGTAGCTTTCT 60.036 55.000 0.00 0.00 0.00 2.52
37 38 1.360820 GGTGCCGAAGTAGCTTTCTC 58.639 55.000 0.00 0.00 0.00 2.87
38 39 0.992802 GTGCCGAAGTAGCTTTCTCG 59.007 55.000 0.00 0.00 0.00 4.04
39 40 0.108804 TGCCGAAGTAGCTTTCTCGG 60.109 55.000 20.00 20.00 42.86 4.63
40 41 2.666989 CCGAAGTAGCTTTCTCGGC 58.333 57.895 14.65 0.00 33.97 5.54
41 42 0.108804 CCGAAGTAGCTTTCTCGGCA 60.109 55.000 14.65 0.00 33.97 5.69
42 43 0.992802 CGAAGTAGCTTTCTCGGCAC 59.007 55.000 0.00 0.00 0.00 5.01
43 44 1.668919 CGAAGTAGCTTTCTCGGCACA 60.669 52.381 0.00 0.00 0.00 4.57
44 45 1.727335 GAAGTAGCTTTCTCGGCACAC 59.273 52.381 0.00 0.00 0.00 3.82
45 46 0.388649 AGTAGCTTTCTCGGCACACG 60.389 55.000 0.00 0.00 46.11 4.49
46 47 1.736645 TAGCTTTCTCGGCACACGC 60.737 57.895 0.00 0.00 43.86 5.34
47 48 4.430423 GCTTTCTCGGCACACGCG 62.430 66.667 3.53 3.53 43.86 6.01
48 49 4.430423 CTTTCTCGGCACACGCGC 62.430 66.667 5.73 0.00 43.86 6.86
49 50 4.961511 TTTCTCGGCACACGCGCT 62.962 61.111 5.73 0.00 43.86 5.92
55 56 3.350612 GGCACACGCGCTGGTTTA 61.351 61.111 5.73 0.00 39.92 2.01
56 57 2.634777 GCACACGCGCTGGTTTAA 59.365 55.556 5.73 0.00 0.00 1.52
57 58 1.209127 GCACACGCGCTGGTTTAAT 59.791 52.632 5.73 0.00 0.00 1.40
58 59 1.065031 GCACACGCGCTGGTTTAATG 61.065 55.000 5.73 0.00 0.00 1.90
59 60 0.454285 CACACGCGCTGGTTTAATGG 60.454 55.000 5.73 0.00 0.00 3.16
60 61 0.604243 ACACGCGCTGGTTTAATGGA 60.604 50.000 5.73 0.00 0.00 3.41
61 62 0.096976 CACGCGCTGGTTTAATGGAG 59.903 55.000 5.73 0.00 0.00 3.86
62 63 1.024579 ACGCGCTGGTTTAATGGAGG 61.025 55.000 5.73 0.00 0.00 4.30
63 64 1.024579 CGCGCTGGTTTAATGGAGGT 61.025 55.000 5.56 0.00 0.00 3.85
64 65 1.741055 CGCGCTGGTTTAATGGAGGTA 60.741 52.381 5.56 0.00 0.00 3.08
65 66 1.940613 GCGCTGGTTTAATGGAGGTAG 59.059 52.381 0.00 0.00 0.00 3.18
66 67 2.561569 CGCTGGTTTAATGGAGGTAGG 58.438 52.381 0.00 0.00 0.00 3.18
67 68 2.298610 GCTGGTTTAATGGAGGTAGGC 58.701 52.381 0.00 0.00 0.00 3.93
68 69 2.561569 CTGGTTTAATGGAGGTAGGCG 58.438 52.381 0.00 0.00 0.00 5.52
69 70 1.210967 TGGTTTAATGGAGGTAGGCGG 59.789 52.381 0.00 0.00 0.00 6.13
70 71 1.476291 GGTTTAATGGAGGTAGGCGGG 60.476 57.143 0.00 0.00 0.00 6.13
71 72 1.211212 GTTTAATGGAGGTAGGCGGGT 59.789 52.381 0.00 0.00 0.00 5.28
72 73 2.435437 GTTTAATGGAGGTAGGCGGGTA 59.565 50.000 0.00 0.00 0.00 3.69
73 74 2.005370 TAATGGAGGTAGGCGGGTAG 57.995 55.000 0.00 0.00 0.00 3.18
74 75 0.263765 AATGGAGGTAGGCGGGTAGA 59.736 55.000 0.00 0.00 0.00 2.59
75 76 0.469518 ATGGAGGTAGGCGGGTAGAC 60.470 60.000 0.00 0.00 0.00 2.59
76 77 2.192187 GGAGGTAGGCGGGTAGACG 61.192 68.421 0.00 0.00 0.00 4.18
77 78 2.123982 AGGTAGGCGGGTAGACGG 60.124 66.667 0.00 0.00 0.00 4.79
78 79 2.124151 GGTAGGCGGGTAGACGGA 60.124 66.667 0.00 0.00 0.00 4.69
79 80 1.530183 GGTAGGCGGGTAGACGGAT 60.530 63.158 0.00 0.00 0.00 4.18
80 81 1.658673 GTAGGCGGGTAGACGGATG 59.341 63.158 0.00 0.00 0.00 3.51
81 82 2.198287 TAGGCGGGTAGACGGATGC 61.198 63.158 0.00 0.00 0.00 3.91
82 83 2.914756 TAGGCGGGTAGACGGATGCA 62.915 60.000 0.00 0.00 0.00 3.96
83 84 2.185867 GCGGGTAGACGGATGCAA 59.814 61.111 0.00 0.00 0.00 4.08
84 85 1.227556 GCGGGTAGACGGATGCAAT 60.228 57.895 0.00 0.00 0.00 3.56
85 86 0.814010 GCGGGTAGACGGATGCAATT 60.814 55.000 0.00 0.00 0.00 2.32
86 87 1.663695 CGGGTAGACGGATGCAATTT 58.336 50.000 0.00 0.00 0.00 1.82
87 88 1.597663 CGGGTAGACGGATGCAATTTC 59.402 52.381 0.00 0.00 0.00 2.17
88 89 2.639065 GGGTAGACGGATGCAATTTCA 58.361 47.619 0.00 0.00 0.00 2.69
89 90 2.614057 GGGTAGACGGATGCAATTTCAG 59.386 50.000 0.00 0.00 0.00 3.02
90 91 3.270877 GGTAGACGGATGCAATTTCAGT 58.729 45.455 0.00 0.00 0.00 3.41
91 92 3.063997 GGTAGACGGATGCAATTTCAGTG 59.936 47.826 0.00 0.00 0.00 3.66
92 93 2.783135 AGACGGATGCAATTTCAGTGT 58.217 42.857 0.00 0.00 0.00 3.55
93 94 2.485426 AGACGGATGCAATTTCAGTGTG 59.515 45.455 0.00 0.00 0.00 3.82
94 95 1.541147 ACGGATGCAATTTCAGTGTGG 59.459 47.619 0.00 0.00 0.00 4.17
95 96 1.811965 CGGATGCAATTTCAGTGTGGA 59.188 47.619 0.00 0.00 0.00 4.02
96 97 2.228582 CGGATGCAATTTCAGTGTGGAA 59.771 45.455 0.00 0.00 0.00 3.53
97 98 3.305267 CGGATGCAATTTCAGTGTGGAAA 60.305 43.478 0.00 0.00 40.72 3.13
98 99 4.240096 GGATGCAATTTCAGTGTGGAAAG 58.760 43.478 0.00 0.00 39.88 2.62
99 100 4.022068 GGATGCAATTTCAGTGTGGAAAGA 60.022 41.667 0.00 0.00 39.88 2.52
100 101 4.998671 TGCAATTTCAGTGTGGAAAGAA 57.001 36.364 0.00 0.00 39.88 2.52
101 102 4.935702 TGCAATTTCAGTGTGGAAAGAAG 58.064 39.130 0.00 0.00 39.88 2.85
102 103 4.644234 TGCAATTTCAGTGTGGAAAGAAGA 59.356 37.500 0.00 0.00 39.88 2.87
103 104 4.978580 GCAATTTCAGTGTGGAAAGAAGAC 59.021 41.667 0.00 0.00 39.88 3.01
104 105 5.450412 GCAATTTCAGTGTGGAAAGAAGACA 60.450 40.000 0.00 0.00 39.88 3.41
105 106 6.736794 GCAATTTCAGTGTGGAAAGAAGACAT 60.737 38.462 0.00 0.00 39.88 3.06
106 107 5.756195 TTTCAGTGTGGAAAGAAGACATG 57.244 39.130 0.00 0.00 33.16 3.21
107 108 3.141398 TCAGTGTGGAAAGAAGACATGC 58.859 45.455 0.00 0.00 0.00 4.06
108 109 2.096069 CAGTGTGGAAAGAAGACATGCG 60.096 50.000 0.00 0.00 0.00 4.73
109 110 0.874390 TGTGGAAAGAAGACATGCGC 59.126 50.000 0.00 0.00 0.00 6.09
110 111 0.874390 GTGGAAAGAAGACATGCGCA 59.126 50.000 14.96 14.96 0.00 6.09
111 112 1.135859 GTGGAAAGAAGACATGCGCAG 60.136 52.381 18.32 10.85 0.00 5.18
112 113 1.160137 GGAAAGAAGACATGCGCAGT 58.840 50.000 18.32 14.33 0.00 4.40
113 114 1.129437 GGAAAGAAGACATGCGCAGTC 59.871 52.381 23.77 23.77 36.26 3.51
114 115 0.792640 AAAGAAGACATGCGCAGTCG 59.207 50.000 24.38 15.67 40.84 4.18
148 149 3.126879 CGAGCCGCTTCAATGCCA 61.127 61.111 0.00 0.00 0.00 4.92
149 150 2.796651 GAGCCGCTTCAATGCCAG 59.203 61.111 0.00 0.00 0.00 4.85
150 151 3.407046 GAGCCGCTTCAATGCCAGC 62.407 63.158 0.00 0.00 0.00 4.85
154 155 3.751246 GCTTCAATGCCAGCGCCA 61.751 61.111 2.29 0.00 0.00 5.69
155 156 2.488355 CTTCAATGCCAGCGCCAG 59.512 61.111 2.29 0.00 0.00 4.85
156 157 3.695022 CTTCAATGCCAGCGCCAGC 62.695 63.158 12.07 12.07 45.58 4.85
166 167 3.558411 GCGCCAGCGAGATGTCAC 61.558 66.667 17.53 0.00 42.83 3.67
167 168 3.250323 CGCCAGCGAGATGTCACG 61.250 66.667 6.06 0.00 42.83 4.35
173 174 2.126071 CGAGATGTCACGCCCGTT 60.126 61.111 0.00 0.00 0.00 4.44
174 175 2.158959 CGAGATGTCACGCCCGTTC 61.159 63.158 0.00 0.00 0.00 3.95
175 176 1.215647 GAGATGTCACGCCCGTTCT 59.784 57.895 0.00 0.00 0.00 3.01
176 177 1.078759 GAGATGTCACGCCCGTTCTG 61.079 60.000 0.00 0.00 0.00 3.02
177 178 2.047274 ATGTCACGCCCGTTCTGG 60.047 61.111 0.00 0.00 37.55 3.86
178 179 2.781595 GATGTCACGCCCGTTCTGGT 62.782 60.000 0.00 0.00 35.15 4.00
179 180 2.737376 GTCACGCCCGTTCTGGTC 60.737 66.667 0.00 0.00 35.15 4.02
180 181 2.915659 TCACGCCCGTTCTGGTCT 60.916 61.111 0.00 0.00 35.15 3.85
181 182 2.738521 CACGCCCGTTCTGGTCTG 60.739 66.667 0.00 0.00 35.15 3.51
182 183 2.915659 ACGCCCGTTCTGGTCTGA 60.916 61.111 0.00 0.00 35.15 3.27
183 184 2.432628 CGCCCGTTCTGGTCTGAC 60.433 66.667 0.00 0.00 35.15 3.51
184 185 2.432628 GCCCGTTCTGGTCTGACG 60.433 66.667 1.07 0.00 35.15 4.35
185 186 3.048602 CCCGTTCTGGTCTGACGT 58.951 61.111 1.07 0.00 35.15 4.34
186 187 1.080705 CCCGTTCTGGTCTGACGTC 60.081 63.158 9.11 9.11 35.15 4.34
187 188 1.658114 CCGTTCTGGTCTGACGTCA 59.342 57.895 18.88 18.88 0.00 4.35
188 189 0.031585 CCGTTCTGGTCTGACGTCAA 59.968 55.000 20.49 7.97 0.00 3.18
189 190 1.336887 CCGTTCTGGTCTGACGTCAAT 60.337 52.381 20.49 0.00 0.00 2.57
190 191 1.721389 CGTTCTGGTCTGACGTCAATG 59.279 52.381 20.49 9.16 0.00 2.82
191 192 1.461127 GTTCTGGTCTGACGTCAATGC 59.539 52.381 20.49 11.86 0.00 3.56
192 193 0.388520 TCTGGTCTGACGTCAATGCG 60.389 55.000 20.49 7.98 37.94 4.73
193 194 1.354337 CTGGTCTGACGTCAATGCGG 61.354 60.000 20.49 7.58 35.98 5.69
194 195 1.080093 GGTCTGACGTCAATGCGGA 60.080 57.895 20.49 10.03 35.98 5.54
195 196 1.078759 GGTCTGACGTCAATGCGGAG 61.079 60.000 20.49 6.03 35.98 4.63
196 197 0.388649 GTCTGACGTCAATGCGGAGT 60.389 55.000 20.49 0.00 35.98 3.85
197 198 0.388520 TCTGACGTCAATGCGGAGTG 60.389 55.000 20.49 0.00 35.98 3.51
198 199 1.354337 CTGACGTCAATGCGGAGTGG 61.354 60.000 20.49 0.00 35.98 4.00
199 200 2.740714 GACGTCAATGCGGAGTGGC 61.741 63.158 11.55 0.51 35.98 5.01
200 201 3.499737 CGTCAATGCGGAGTGGCC 61.500 66.667 2.74 0.00 0.00 5.36
209 210 4.522971 GGAGTGGCCGCTCTAAAG 57.477 61.111 38.00 0.00 35.89 1.85
210 211 1.815840 GGAGTGGCCGCTCTAAAGC 60.816 63.158 38.00 21.92 45.56 3.51
222 223 4.075763 GCTCTAAAGCGCCATGAATATG 57.924 45.455 2.29 0.00 39.10 1.78
223 224 3.120060 GCTCTAAAGCGCCATGAATATGG 60.120 47.826 2.29 1.97 46.53 2.74
224 225 6.155481 GCTCTAAAGCGCCATGAATATGGG 62.155 50.000 2.29 0.60 45.26 4.00
236 237 6.712241 CATGAATATGGGTAGCTAACTTCG 57.288 41.667 9.06 0.00 0.00 3.79
237 238 5.209818 TGAATATGGGTAGCTAACTTCGG 57.790 43.478 9.06 0.00 0.00 4.30
238 239 4.039973 TGAATATGGGTAGCTAACTTCGGG 59.960 45.833 9.06 0.00 0.00 5.14
239 240 0.468648 ATGGGTAGCTAACTTCGGGC 59.531 55.000 9.06 0.00 0.00 6.13
240 241 1.227176 GGGTAGCTAACTTCGGGCG 60.227 63.158 9.06 0.00 0.00 6.13
241 242 1.227176 GGTAGCTAACTTCGGGCGG 60.227 63.158 0.09 0.00 0.00 6.13
242 243 1.227176 GTAGCTAACTTCGGGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
243 244 1.380246 TAGCTAACTTCGGGCGGGA 60.380 57.895 0.00 0.00 0.00 5.14
244 245 0.971959 TAGCTAACTTCGGGCGGGAA 60.972 55.000 0.00 0.00 0.00 3.97
245 246 1.376295 GCTAACTTCGGGCGGGAAA 60.376 57.895 0.00 0.00 0.00 3.13
246 247 1.366854 GCTAACTTCGGGCGGGAAAG 61.367 60.000 0.00 0.00 0.00 2.62
247 248 0.743345 CTAACTTCGGGCGGGAAAGG 60.743 60.000 0.00 0.00 0.00 3.11
248 249 2.187896 TAACTTCGGGCGGGAAAGGG 62.188 60.000 0.00 0.00 0.00 3.95
266 267 4.489771 CGCCGGCAAGGGAGGATT 62.490 66.667 28.98 0.00 41.48 3.01
267 268 2.043953 GCCGGCAAGGGAGGATTT 60.044 61.111 24.80 0.00 41.48 2.17
268 269 1.682344 GCCGGCAAGGGAGGATTTT 60.682 57.895 24.80 0.00 41.48 1.82
269 270 1.257750 GCCGGCAAGGGAGGATTTTT 61.258 55.000 24.80 0.00 41.48 1.94
270 271 0.532115 CCGGCAAGGGAGGATTTTTG 59.468 55.000 0.00 0.00 35.97 2.44
271 272 0.532115 CGGCAAGGGAGGATTTTTGG 59.468 55.000 0.00 0.00 0.00 3.28
272 273 0.904649 GGCAAGGGAGGATTTTTGGG 59.095 55.000 0.00 0.00 0.00 4.12
273 274 0.250234 GCAAGGGAGGATTTTTGGGC 59.750 55.000 0.00 0.00 0.00 5.36
274 275 0.532115 CAAGGGAGGATTTTTGGGCG 59.468 55.000 0.00 0.00 0.00 6.13
275 276 0.614697 AAGGGAGGATTTTTGGGCGG 60.615 55.000 0.00 0.00 0.00 6.13
276 277 2.058001 GGGAGGATTTTTGGGCGGG 61.058 63.158 0.00 0.00 0.00 6.13
277 278 1.000145 GGAGGATTTTTGGGCGGGA 60.000 57.895 0.00 0.00 0.00 5.14
278 279 1.320344 GGAGGATTTTTGGGCGGGAC 61.320 60.000 0.00 0.00 0.00 4.46
279 280 0.610785 GAGGATTTTTGGGCGGGACA 60.611 55.000 0.00 0.00 0.00 4.02
280 281 0.611896 AGGATTTTTGGGCGGGACAG 60.612 55.000 0.00 0.00 0.00 3.51
281 282 1.604147 GGATTTTTGGGCGGGACAGG 61.604 60.000 0.00 0.00 0.00 4.00
282 283 1.604147 GATTTTTGGGCGGGACAGGG 61.604 60.000 0.00 0.00 0.00 4.45
283 284 4.986708 TTTTGGGCGGGACAGGGC 62.987 66.667 0.00 0.00 0.00 5.19
289 290 4.329545 GCGGGACAGGGCAGTCAA 62.330 66.667 10.79 0.00 40.29 3.18
290 291 2.429930 CGGGACAGGGCAGTCAAA 59.570 61.111 10.79 0.00 40.29 2.69
291 292 1.228124 CGGGACAGGGCAGTCAAAA 60.228 57.895 10.79 0.00 40.29 2.44
292 293 1.237285 CGGGACAGGGCAGTCAAAAG 61.237 60.000 10.79 0.00 40.29 2.27
293 294 1.527433 GGGACAGGGCAGTCAAAAGC 61.527 60.000 10.79 0.00 40.29 3.51
294 295 1.576421 GACAGGGCAGTCAAAAGCG 59.424 57.895 4.67 0.00 38.40 4.68
295 296 1.856265 GACAGGGCAGTCAAAAGCGG 61.856 60.000 4.67 0.00 38.40 5.52
296 297 2.282462 AGGGCAGTCAAAAGCGGG 60.282 61.111 0.00 0.00 0.00 6.13
297 298 2.597510 GGGCAGTCAAAAGCGGGT 60.598 61.111 0.00 0.00 0.00 5.28
298 299 2.644992 GGCAGTCAAAAGCGGGTG 59.355 61.111 0.00 0.00 0.00 4.61
299 300 2.193536 GGCAGTCAAAAGCGGGTGT 61.194 57.895 0.00 0.00 0.00 4.16
300 301 1.008538 GCAGTCAAAAGCGGGTGTG 60.009 57.895 0.00 0.00 0.00 3.82
301 302 1.654220 CAGTCAAAAGCGGGTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
302 303 2.193536 AGTCAAAAGCGGGTGTGGC 61.194 57.895 0.00 0.00 0.00 5.01
303 304 2.124109 TCAAAAGCGGGTGTGGCA 60.124 55.556 0.00 0.00 0.00 4.92
304 305 2.192861 TCAAAAGCGGGTGTGGCAG 61.193 57.895 0.00 0.00 0.00 4.85
305 306 2.123897 AAAAGCGGGTGTGGCAGT 60.124 55.556 0.00 0.00 0.00 4.40
306 307 2.489275 AAAAGCGGGTGTGGCAGTG 61.489 57.895 0.00 0.00 0.00 3.66
307 308 2.902423 AAAAGCGGGTGTGGCAGTGA 62.902 55.000 0.00 0.00 0.00 3.41
308 309 2.697147 AAAGCGGGTGTGGCAGTGAT 62.697 55.000 0.00 0.00 0.00 3.06
309 310 3.127533 GCGGGTGTGGCAGTGATC 61.128 66.667 0.00 0.00 0.00 2.92
310 311 2.436646 CGGGTGTGGCAGTGATCC 60.437 66.667 0.00 0.00 0.00 3.36
311 312 2.436646 GGGTGTGGCAGTGATCCG 60.437 66.667 0.00 0.00 0.00 4.18
312 313 2.436646 GGTGTGGCAGTGATCCGG 60.437 66.667 0.00 0.00 0.00 5.14
313 314 2.662596 GTGTGGCAGTGATCCGGA 59.337 61.111 6.61 6.61 0.00 5.14
314 315 1.741770 GTGTGGCAGTGATCCGGAC 60.742 63.158 6.12 0.90 0.00 4.79
315 316 2.213513 TGTGGCAGTGATCCGGACA 61.214 57.895 6.12 4.15 0.00 4.02
316 317 1.221840 GTGGCAGTGATCCGGACAT 59.778 57.895 6.12 0.00 0.00 3.06
317 318 0.464036 GTGGCAGTGATCCGGACATA 59.536 55.000 6.12 0.00 0.00 2.29
318 319 1.070758 GTGGCAGTGATCCGGACATAT 59.929 52.381 6.12 0.00 0.00 1.78
319 320 1.070601 TGGCAGTGATCCGGACATATG 59.929 52.381 6.12 11.26 0.00 1.78
320 321 1.151668 GCAGTGATCCGGACATATGC 58.848 55.000 6.12 16.64 0.00 3.14
321 322 1.541015 GCAGTGATCCGGACATATGCA 60.541 52.381 24.95 11.19 34.94 3.96
322 323 2.837498 CAGTGATCCGGACATATGCAA 58.163 47.619 6.12 0.00 0.00 4.08
323 324 3.205338 CAGTGATCCGGACATATGCAAA 58.795 45.455 6.12 0.00 0.00 3.68
324 325 3.249320 CAGTGATCCGGACATATGCAAAG 59.751 47.826 6.12 0.00 0.00 2.77
325 326 2.031682 GTGATCCGGACATATGCAAAGC 60.032 50.000 6.12 0.00 0.00 3.51
326 327 1.537202 GATCCGGACATATGCAAAGCC 59.463 52.381 6.12 0.00 0.00 4.35
327 328 0.546122 TCCGGACATATGCAAAGCCT 59.454 50.000 0.00 0.00 0.00 4.58
328 329 1.064758 TCCGGACATATGCAAAGCCTT 60.065 47.619 0.00 0.00 0.00 4.35
329 330 1.334869 CCGGACATATGCAAAGCCTTC 59.665 52.381 0.00 0.00 0.00 3.46
330 331 2.292267 CGGACATATGCAAAGCCTTCT 58.708 47.619 1.58 0.00 0.00 2.85
331 332 3.466836 CGGACATATGCAAAGCCTTCTA 58.533 45.455 1.58 0.00 0.00 2.10
332 333 3.876914 CGGACATATGCAAAGCCTTCTAA 59.123 43.478 1.58 0.00 0.00 2.10
333 334 4.516698 CGGACATATGCAAAGCCTTCTAAT 59.483 41.667 1.58 0.00 0.00 1.73
334 335 5.009010 CGGACATATGCAAAGCCTTCTAATT 59.991 40.000 1.58 0.00 0.00 1.40
335 336 6.460123 CGGACATATGCAAAGCCTTCTAATTT 60.460 38.462 1.58 0.00 0.00 1.82
336 337 6.698766 GGACATATGCAAAGCCTTCTAATTTG 59.301 38.462 1.58 0.00 37.07 2.32
337 338 7.174107 ACATATGCAAAGCCTTCTAATTTGT 57.826 32.000 1.58 0.00 36.52 2.83
338 339 7.614494 ACATATGCAAAGCCTTCTAATTTGTT 58.386 30.769 1.58 0.00 36.52 2.83
339 340 8.096414 ACATATGCAAAGCCTTCTAATTTGTTT 58.904 29.630 1.58 0.00 36.52 2.83
340 341 8.938906 CATATGCAAAGCCTTCTAATTTGTTTT 58.061 29.630 0.00 0.00 36.52 2.43
341 342 7.806409 ATGCAAAGCCTTCTAATTTGTTTTT 57.194 28.000 0.00 0.00 36.52 1.94
342 343 7.014092 TGCAAAGCCTTCTAATTTGTTTTTG 57.986 32.000 0.00 0.00 36.52 2.44
343 344 6.038050 TGCAAAGCCTTCTAATTTGTTTTTGG 59.962 34.615 0.00 0.00 36.52 3.28
344 345 6.038161 GCAAAGCCTTCTAATTTGTTTTTGGT 59.962 34.615 0.00 0.00 36.52 3.67
345 346 7.415095 GCAAAGCCTTCTAATTTGTTTTTGGTT 60.415 33.333 0.00 0.00 36.52 3.67
346 347 8.458052 CAAAGCCTTCTAATTTGTTTTTGGTTT 58.542 29.630 0.00 0.00 0.00 3.27
347 348 7.552458 AGCCTTCTAATTTGTTTTTGGTTTG 57.448 32.000 0.00 0.00 0.00 2.93
348 349 6.038161 AGCCTTCTAATTTGTTTTTGGTTTGC 59.962 34.615 0.00 0.00 0.00 3.68
349 350 6.418141 CCTTCTAATTTGTTTTTGGTTTGCG 58.582 36.000 0.00 0.00 0.00 4.85
350 351 6.256757 CCTTCTAATTTGTTTTTGGTTTGCGA 59.743 34.615 0.00 0.00 0.00 5.10
351 352 7.201565 CCTTCTAATTTGTTTTTGGTTTGCGAA 60.202 33.333 0.00 0.00 0.00 4.70
352 353 7.596749 TCTAATTTGTTTTTGGTTTGCGAAA 57.403 28.000 0.00 0.00 0.00 3.46
353 354 8.029642 TCTAATTTGTTTTTGGTTTGCGAAAA 57.970 26.923 0.00 0.00 31.95 2.29
354 355 8.504005 TCTAATTTGTTTTTGGTTTGCGAAAAA 58.496 25.926 0.00 0.00 39.04 1.94
373 374 3.586100 AAAAACACGTTCAAACAGCCT 57.414 38.095 0.00 0.00 0.00 4.58
374 375 3.586100 AAAACACGTTCAAACAGCCTT 57.414 38.095 0.00 0.00 0.00 4.35
383 384 6.959311 CACGTTCAAACAGCCTTAACATATAC 59.041 38.462 0.00 0.00 0.00 1.47
387 388 7.843490 TCAAACAGCCTTAACATATACAGAC 57.157 36.000 0.00 0.00 0.00 3.51
389 390 5.291905 ACAGCCTTAACATATACAGACCC 57.708 43.478 0.00 0.00 0.00 4.46
390 391 4.719773 ACAGCCTTAACATATACAGACCCA 59.280 41.667 0.00 0.00 0.00 4.51
395 396 5.163488 CCTTAACATATACAGACCCACGACA 60.163 44.000 0.00 0.00 0.00 4.35
405 406 0.038166 ACCCACGACAGATGGCAAAT 59.962 50.000 0.00 0.00 35.74 2.32
421 422 2.855187 GCAAATACGCACGGTTCAAACA 60.855 45.455 0.00 0.00 0.00 2.83
442 443 2.737376 GCGGACGGTTCGAAGCTT 60.737 61.111 23.57 15.72 0.00 3.74
444 445 1.372499 CGGACGGTTCGAAGCTTCA 60.372 57.895 27.97 10.50 0.00 3.02
448 449 1.128692 GACGGTTCGAAGCTTCATTGG 59.871 52.381 25.47 12.52 0.00 3.16
486 487 3.189287 GTGCTTCTGGTAAGTGGTTCATG 59.811 47.826 0.00 0.00 0.00 3.07
487 488 3.072330 TGCTTCTGGTAAGTGGTTCATGA 59.928 43.478 0.00 0.00 0.00 3.07
488 489 4.263462 TGCTTCTGGTAAGTGGTTCATGAT 60.263 41.667 0.00 0.00 0.00 2.45
489 490 4.333926 GCTTCTGGTAAGTGGTTCATGATC 59.666 45.833 0.00 0.00 0.00 2.92
490 491 5.738909 CTTCTGGTAAGTGGTTCATGATCT 58.261 41.667 0.00 0.00 0.00 2.75
491 492 5.762179 TCTGGTAAGTGGTTCATGATCTT 57.238 39.130 0.00 2.57 0.00 2.40
492 493 5.734720 TCTGGTAAGTGGTTCATGATCTTC 58.265 41.667 0.00 0.00 0.00 2.87
493 494 5.248248 TCTGGTAAGTGGTTCATGATCTTCA 59.752 40.000 0.00 0.00 0.00 3.02
494 495 5.245531 TGGTAAGTGGTTCATGATCTTCAC 58.754 41.667 0.00 3.38 0.00 3.18
495 496 5.013079 TGGTAAGTGGTTCATGATCTTCACT 59.987 40.000 0.00 5.66 37.09 3.41
496 497 5.582665 GGTAAGTGGTTCATGATCTTCACTC 59.417 44.000 15.93 8.58 34.82 3.51
497 498 3.854666 AGTGGTTCATGATCTTCACTCG 58.145 45.455 0.00 0.00 30.74 4.18
498 499 2.349886 GTGGTTCATGATCTTCACTCGC 59.650 50.000 0.00 0.00 0.00 5.03
499 500 2.028203 TGGTTCATGATCTTCACTCGCA 60.028 45.455 0.00 0.00 0.00 5.10
500 501 3.002791 GGTTCATGATCTTCACTCGCAA 58.997 45.455 0.00 0.00 0.00 4.85
501 502 3.436704 GGTTCATGATCTTCACTCGCAAA 59.563 43.478 0.00 0.00 0.00 3.68
502 503 4.083324 GGTTCATGATCTTCACTCGCAAAA 60.083 41.667 0.00 0.00 0.00 2.44
503 504 5.451908 GTTCATGATCTTCACTCGCAAAAA 58.548 37.500 0.00 0.00 0.00 1.94
535 536 1.325640 CATGATCTTCACCGCAACGAG 59.674 52.381 0.00 0.00 0.00 4.18
693 694 2.552743 ACTCACGATCACGAGAAGACAA 59.447 45.455 13.80 0.00 42.66 3.18
694 695 3.167425 CTCACGATCACGAGAAGACAAG 58.833 50.000 2.82 0.00 42.66 3.16
695 696 2.095212 TCACGATCACGAGAAGACAAGG 60.095 50.000 0.00 0.00 42.66 3.61
696 697 1.272781 CGATCACGAGAAGACAAGGC 58.727 55.000 0.00 0.00 42.66 4.35
738 739 2.089201 CCCACTCCGTAAACAAATCCC 58.911 52.381 0.00 0.00 0.00 3.85
866 870 2.490217 CTACCGTCGCCACCTGAG 59.510 66.667 0.00 0.00 0.00 3.35
2305 2375 0.248012 TTTCGCCCTGCATAACGAGA 59.752 50.000 5.43 0.00 35.74 4.04
2367 2445 1.328279 TCTGACTCTTGTGCGAGGAA 58.672 50.000 0.00 0.00 35.33 3.36
2398 2476 6.018180 ACAACTTTTCTTTTAGACTAGCCACG 60.018 38.462 0.00 0.00 0.00 4.94
2403 2481 4.021229 TCTTTTAGACTAGCCACGATGGA 58.979 43.478 8.04 0.00 40.96 3.41
2485 2563 5.430417 TGGGGAGTAACATATGTGTGGTAAT 59.570 40.000 9.63 0.00 38.92 1.89
2489 2567 7.606456 GGGAGTAACATATGTGTGGTAATATGG 59.394 40.741 9.63 0.00 39.87 2.74
2491 2569 9.424319 GAGTAACATATGTGTGGTAATATGGAG 57.576 37.037 9.63 0.00 39.87 3.86
2524 2602 9.959721 ATTTATTAGGTTGTAGACACATCTTGT 57.040 29.630 0.00 0.00 43.10 3.16
2582 2660 9.310716 GTAACTACCTATGTTACCACTTTCATC 57.689 37.037 0.00 0.00 42.06 2.92
2622 2700 5.149273 GCATGCCACATCATCTATTTAACG 58.851 41.667 6.36 0.00 0.00 3.18
2644 2722 7.142306 ACGTAGATATGCGTGATGTTACTAT 57.858 36.000 1.77 0.00 40.03 2.12
2659 2737 8.857098 TGATGTTACTATCTATGTTACTCCCAC 58.143 37.037 0.00 0.00 0.00 4.61
2660 2738 7.592885 TGTTACTATCTATGTTACTCCCACC 57.407 40.000 0.00 0.00 0.00 4.61
2675 2753 1.553706 CCACCGTGGGTAGTCTTAGT 58.446 55.000 9.99 0.00 32.11 2.24
2677 2755 2.424956 CCACCGTGGGTAGTCTTAGTAC 59.575 54.545 9.99 0.00 32.11 2.73
2678 2756 3.350833 CACCGTGGGTAGTCTTAGTACT 58.649 50.000 0.00 0.00 32.11 2.73
2679 2757 4.517285 CACCGTGGGTAGTCTTAGTACTA 58.483 47.826 0.00 0.00 32.11 1.82
2681 2759 4.226168 ACCGTGGGTAGTCTTAGTACTAGT 59.774 45.833 0.00 0.00 32.11 2.57
2790 5599 9.492973 AACTTGTATTTCCAATTCCAAAATGAG 57.507 29.630 0.00 0.00 0.00 2.90
2865 6509 6.148948 TCTTTGCGATTTCAATGGTTACAAG 58.851 36.000 0.00 0.00 0.00 3.16
2866 6510 3.832276 TGCGATTTCAATGGTTACAAGC 58.168 40.909 0.00 0.00 0.00 4.01
2912 6557 3.543680 AACCGAATGTAGGTCAGATGG 57.456 47.619 0.00 0.00 41.95 3.51
2914 6559 2.838202 ACCGAATGTAGGTCAGATGGTT 59.162 45.455 0.00 0.00 37.44 3.67
2915 6560 4.028131 ACCGAATGTAGGTCAGATGGTTA 58.972 43.478 0.00 0.00 37.44 2.85
2916 6561 4.142004 ACCGAATGTAGGTCAGATGGTTAC 60.142 45.833 0.00 0.00 37.44 2.50
2918 6563 5.301045 CCGAATGTAGGTCAGATGGTTACTA 59.699 44.000 0.00 0.00 0.00 1.82
2919 6564 6.183360 CCGAATGTAGGTCAGATGGTTACTAA 60.183 42.308 0.00 0.00 0.00 2.24
2921 6566 8.573885 CGAATGTAGGTCAGATGGTTACTAATA 58.426 37.037 0.00 0.00 0.00 0.98
2925 6570 8.857098 TGTAGGTCAGATGGTTACTAATATGTC 58.143 37.037 0.00 0.00 0.00 3.06
2926 6571 9.080097 GTAGGTCAGATGGTTACTAATATGTCT 57.920 37.037 0.00 0.00 0.00 3.41
2927 6572 8.554490 AGGTCAGATGGTTACTAATATGTCTT 57.446 34.615 0.00 0.00 0.00 3.01
2929 6574 9.915629 GGTCAGATGGTTACTAATATGTCTTAG 57.084 37.037 0.00 0.00 35.31 2.18
2930 6575 9.915629 GTCAGATGGTTACTAATATGTCTTAGG 57.084 37.037 0.00 0.00 33.79 2.69
2931 6576 8.585881 TCAGATGGTTACTAATATGTCTTAGGC 58.414 37.037 0.00 0.00 33.79 3.93
2932 6577 8.589338 CAGATGGTTACTAATATGTCTTAGGCT 58.411 37.037 0.00 0.00 33.79 4.58
2933 6578 9.160412 AGATGGTTACTAATATGTCTTAGGCTT 57.840 33.333 0.00 0.00 33.79 4.35
2934 6579 9.780186 GATGGTTACTAATATGTCTTAGGCTTT 57.220 33.333 0.00 0.00 33.79 3.51
2940 6585 8.959705 ACTAATATGTCTTAGGCTTTAACACC 57.040 34.615 0.00 0.00 33.79 4.16
3011 6659 9.409949 CGTTCAATGAAAGTAAATATTCTCGTC 57.590 33.333 0.00 0.00 0.00 4.20
3037 6688 1.002033 GACGTCTGTGGTGACTACGTT 60.002 52.381 8.70 0.00 42.00 3.99
3041 6692 4.455533 ACGTCTGTGGTGACTACGTTAATA 59.544 41.667 0.00 0.00 40.31 0.98
3061 6712 9.533253 GTTAATATCAAAATATTGTGCCAGCTT 57.467 29.630 0.22 0.00 38.31 3.74
3067 6718 7.930217 TCAAAATATTGTGCCAGCTTAGTATC 58.070 34.615 0.22 0.00 37.79 2.24
3071 6722 9.627123 AAATATTGTGCCAGCTTAGTATCTTAA 57.373 29.630 0.00 0.00 0.00 1.85
3113 6764 2.775423 CGTGCGTGCGCTCATAAA 59.225 55.556 17.49 0.00 42.51 1.40
3114 6765 1.131623 CGTGCGTGCGCTCATAAAA 59.868 52.632 17.49 0.00 42.51 1.52
3145 6796 3.678289 TGTGAGCATCTGCAATTGTACT 58.322 40.909 7.40 0.00 45.16 2.73
3154 6805 5.682943 TCTGCAATTGTACTGTGTTAACC 57.317 39.130 7.40 0.00 0.00 2.85
3185 6837 7.259290 AGGCACTTTATACGTCAATATTTGG 57.741 36.000 0.00 0.00 27.25 3.28
3186 6838 5.912955 GGCACTTTATACGTCAATATTTGGC 59.087 40.000 0.00 0.00 0.00 4.52
3189 6841 6.910433 CACTTTATACGTCAATATTTGGCCAC 59.090 38.462 3.88 0.00 29.54 5.01
3190 6842 6.826741 ACTTTATACGTCAATATTTGGCCACT 59.173 34.615 3.88 0.00 29.54 4.00
3191 6843 6.612247 TTATACGTCAATATTTGGCCACTG 57.388 37.500 3.88 0.00 29.54 3.66
3193 6845 1.472082 CGTCAATATTTGGCCACTGCA 59.528 47.619 3.88 0.00 40.13 4.41
3196 6848 4.506758 GTCAATATTTGGCCACTGCATTT 58.493 39.130 3.88 0.00 40.13 2.32
3198 6850 6.105333 GTCAATATTTGGCCACTGCATTTTA 58.895 36.000 3.88 0.00 40.13 1.52
3199 6851 6.256321 GTCAATATTTGGCCACTGCATTTTAG 59.744 38.462 3.88 0.00 40.13 1.85
3200 6852 6.154192 TCAATATTTGGCCACTGCATTTTAGA 59.846 34.615 3.88 0.00 40.13 2.10
3201 6853 3.658757 TTTGGCCACTGCATTTTAGAC 57.341 42.857 3.88 0.00 40.13 2.59
3202 6854 1.544724 TGGCCACTGCATTTTAGACC 58.455 50.000 0.00 0.00 40.13 3.85
3203 6855 0.451783 GGCCACTGCATTTTAGACCG 59.548 55.000 0.00 0.00 40.13 4.79
3204 6856 1.165270 GCCACTGCATTTTAGACCGT 58.835 50.000 0.00 0.00 37.47 4.83
3205 6857 1.135689 GCCACTGCATTTTAGACCGTG 60.136 52.381 0.00 0.00 37.47 4.94
3207 6859 1.135689 CACTGCATTTTAGACCGTGCC 60.136 52.381 0.00 0.00 36.79 5.01
3208 6860 0.096976 CTGCATTTTAGACCGTGCCG 59.903 55.000 0.00 0.00 36.79 5.69
3209 6861 0.604243 TGCATTTTAGACCGTGCCGT 60.604 50.000 0.00 0.00 36.79 5.68
3210 6862 0.179200 GCATTTTAGACCGTGCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
3211 6863 0.179200 CATTTTAGACCGTGCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
3212 6864 0.321298 ATTTTAGACCGTGCCGTGCT 60.321 50.000 0.00 0.00 0.00 4.40
3213 6865 0.317799 TTTTAGACCGTGCCGTGCTA 59.682 50.000 0.00 0.00 0.00 3.49
3214 6866 0.108992 TTTAGACCGTGCCGTGCTAG 60.109 55.000 0.00 0.00 0.00 3.42
3215 6867 0.961857 TTAGACCGTGCCGTGCTAGA 60.962 55.000 0.00 0.00 0.00 2.43
3290 6942 2.560504 TGTTTGTGAAGATGTGAGCGT 58.439 42.857 0.00 0.00 0.00 5.07
3292 6944 3.740832 TGTTTGTGAAGATGTGAGCGTAG 59.259 43.478 0.00 0.00 0.00 3.51
3310 6965 5.825679 AGCGTAGATCTCTTCACTACTGATT 59.174 40.000 0.00 0.00 35.69 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.716006 CCAAGCGCCACACGTCTG 61.716 66.667 2.29 0.00 46.11 3.51
1 2 4.988598 CCCAAGCGCCACACGTCT 62.989 66.667 2.29 0.00 46.11 4.18
11 12 3.599285 TACTTCGGCACCCCAAGCG 62.599 63.158 0.00 0.00 0.00 4.68
12 13 1.745489 CTACTTCGGCACCCCAAGC 60.745 63.158 0.00 0.00 0.00 4.01
13 14 1.745489 GCTACTTCGGCACCCCAAG 60.745 63.158 0.00 0.00 0.00 3.61
14 15 1.774894 AAGCTACTTCGGCACCCCAA 61.775 55.000 0.00 0.00 0.00 4.12
15 16 1.774894 AAAGCTACTTCGGCACCCCA 61.775 55.000 0.00 0.00 0.00 4.96
16 17 1.002502 AAAGCTACTTCGGCACCCC 60.003 57.895 0.00 0.00 0.00 4.95
17 18 0.036294 AGAAAGCTACTTCGGCACCC 60.036 55.000 0.00 0.00 0.00 4.61
18 19 1.360820 GAGAAAGCTACTTCGGCACC 58.639 55.000 0.00 0.00 0.00 5.01
19 20 0.992802 CGAGAAAGCTACTTCGGCAC 59.007 55.000 5.94 0.00 0.00 5.01
20 21 0.108804 CCGAGAAAGCTACTTCGGCA 60.109 55.000 16.54 0.00 33.97 5.69
21 22 2.666989 CCGAGAAAGCTACTTCGGC 58.333 57.895 16.54 2.94 33.97 5.54
22 23 0.108804 TGCCGAGAAAGCTACTTCGG 60.109 55.000 21.67 21.67 42.86 4.30
23 24 0.992802 GTGCCGAGAAAGCTACTTCG 59.007 55.000 6.68 6.68 0.00 3.79
24 25 1.727335 GTGTGCCGAGAAAGCTACTTC 59.273 52.381 0.00 0.00 0.00 3.01
25 26 1.797025 GTGTGCCGAGAAAGCTACTT 58.203 50.000 0.00 0.00 0.00 2.24
26 27 0.388649 CGTGTGCCGAGAAAGCTACT 60.389 55.000 0.00 0.00 39.56 2.57
27 28 1.956620 GCGTGTGCCGAGAAAGCTAC 61.957 60.000 0.00 0.00 39.56 3.58
28 29 1.736645 GCGTGTGCCGAGAAAGCTA 60.737 57.895 0.00 0.00 39.56 3.32
29 30 3.044305 GCGTGTGCCGAGAAAGCT 61.044 61.111 0.00 0.00 39.56 3.74
30 31 4.430423 CGCGTGTGCCGAGAAAGC 62.430 66.667 0.00 0.00 38.82 3.51
31 32 4.430423 GCGCGTGTGCCGAGAAAG 62.430 66.667 8.43 0.00 38.82 2.62
32 33 4.961511 AGCGCGTGTGCCGAGAAA 62.962 61.111 8.43 0.00 38.82 2.52
38 39 2.195123 ATTAAACCAGCGCGTGTGCC 62.195 55.000 8.43 0.00 38.08 5.01
39 40 1.065031 CATTAAACCAGCGCGTGTGC 61.065 55.000 8.43 0.00 37.91 4.57
40 41 0.454285 CCATTAAACCAGCGCGTGTG 60.454 55.000 8.43 5.72 0.00 3.82
41 42 0.604243 TCCATTAAACCAGCGCGTGT 60.604 50.000 8.43 0.00 0.00 4.49
42 43 0.096976 CTCCATTAAACCAGCGCGTG 59.903 55.000 8.43 4.73 0.00 5.34
43 44 1.024579 CCTCCATTAAACCAGCGCGT 61.025 55.000 8.43 0.00 0.00 6.01
44 45 1.024579 ACCTCCATTAAACCAGCGCG 61.025 55.000 0.00 0.00 0.00 6.86
45 46 1.940613 CTACCTCCATTAAACCAGCGC 59.059 52.381 0.00 0.00 0.00 5.92
46 47 2.561569 CCTACCTCCATTAAACCAGCG 58.438 52.381 0.00 0.00 0.00 5.18
47 48 2.298610 GCCTACCTCCATTAAACCAGC 58.701 52.381 0.00 0.00 0.00 4.85
48 49 2.561569 CGCCTACCTCCATTAAACCAG 58.438 52.381 0.00 0.00 0.00 4.00
49 50 1.210967 CCGCCTACCTCCATTAAACCA 59.789 52.381 0.00 0.00 0.00 3.67
50 51 1.476291 CCCGCCTACCTCCATTAAACC 60.476 57.143 0.00 0.00 0.00 3.27
51 52 1.211212 ACCCGCCTACCTCCATTAAAC 59.789 52.381 0.00 0.00 0.00 2.01
52 53 1.587066 ACCCGCCTACCTCCATTAAA 58.413 50.000 0.00 0.00 0.00 1.52
53 54 2.091166 TCTACCCGCCTACCTCCATTAA 60.091 50.000 0.00 0.00 0.00 1.40
54 55 1.500303 TCTACCCGCCTACCTCCATTA 59.500 52.381 0.00 0.00 0.00 1.90
55 56 0.263765 TCTACCCGCCTACCTCCATT 59.736 55.000 0.00 0.00 0.00 3.16
56 57 0.469518 GTCTACCCGCCTACCTCCAT 60.470 60.000 0.00 0.00 0.00 3.41
57 58 1.076485 GTCTACCCGCCTACCTCCA 60.076 63.158 0.00 0.00 0.00 3.86
58 59 2.192187 CGTCTACCCGCCTACCTCC 61.192 68.421 0.00 0.00 0.00 4.30
59 60 2.192187 CCGTCTACCCGCCTACCTC 61.192 68.421 0.00 0.00 0.00 3.85
60 61 2.004408 ATCCGTCTACCCGCCTACCT 62.004 60.000 0.00 0.00 0.00 3.08
61 62 1.530183 ATCCGTCTACCCGCCTACC 60.530 63.158 0.00 0.00 0.00 3.18
62 63 1.658673 CATCCGTCTACCCGCCTAC 59.341 63.158 0.00 0.00 0.00 3.18
63 64 2.198287 GCATCCGTCTACCCGCCTA 61.198 63.158 0.00 0.00 0.00 3.93
64 65 3.537874 GCATCCGTCTACCCGCCT 61.538 66.667 0.00 0.00 0.00 5.52
65 66 2.660258 ATTGCATCCGTCTACCCGCC 62.660 60.000 0.00 0.00 0.00 6.13
66 67 0.814010 AATTGCATCCGTCTACCCGC 60.814 55.000 0.00 0.00 0.00 6.13
67 68 1.597663 GAAATTGCATCCGTCTACCCG 59.402 52.381 0.00 0.00 0.00 5.28
68 69 2.614057 CTGAAATTGCATCCGTCTACCC 59.386 50.000 0.00 0.00 0.00 3.69
69 70 3.063997 CACTGAAATTGCATCCGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
70 71 3.684788 ACACTGAAATTGCATCCGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
71 72 3.684305 CACACTGAAATTGCATCCGTCTA 59.316 43.478 0.00 0.00 0.00 2.59
72 73 2.485426 CACACTGAAATTGCATCCGTCT 59.515 45.455 0.00 0.00 0.00 4.18
73 74 2.414559 CCACACTGAAATTGCATCCGTC 60.415 50.000 0.00 0.00 0.00 4.79
74 75 1.541147 CCACACTGAAATTGCATCCGT 59.459 47.619 0.00 0.00 0.00 4.69
75 76 1.811965 TCCACACTGAAATTGCATCCG 59.188 47.619 0.00 0.00 0.00 4.18
76 77 3.940209 TTCCACACTGAAATTGCATCC 57.060 42.857 0.00 0.00 0.00 3.51
77 78 5.125100 TCTTTCCACACTGAAATTGCATC 57.875 39.130 0.00 0.00 33.98 3.91
78 79 5.302568 TCTTCTTTCCACACTGAAATTGCAT 59.697 36.000 0.00 0.00 33.98 3.96
79 80 4.644234 TCTTCTTTCCACACTGAAATTGCA 59.356 37.500 0.00 0.00 33.98 4.08
80 81 4.978580 GTCTTCTTTCCACACTGAAATTGC 59.021 41.667 0.00 0.00 33.98 3.56
81 82 6.135290 TGTCTTCTTTCCACACTGAAATTG 57.865 37.500 0.00 0.00 33.98 2.32
82 83 6.736794 GCATGTCTTCTTTCCACACTGAAATT 60.737 38.462 0.00 0.00 33.98 1.82
83 84 5.278660 GCATGTCTTCTTTCCACACTGAAAT 60.279 40.000 0.00 0.00 33.98 2.17
84 85 4.036734 GCATGTCTTCTTTCCACACTGAAA 59.963 41.667 0.00 0.00 33.42 2.69
85 86 3.565482 GCATGTCTTCTTTCCACACTGAA 59.435 43.478 0.00 0.00 0.00 3.02
86 87 3.141398 GCATGTCTTCTTTCCACACTGA 58.859 45.455 0.00 0.00 0.00 3.41
87 88 2.096069 CGCATGTCTTCTTTCCACACTG 60.096 50.000 0.00 0.00 0.00 3.66
88 89 2.146342 CGCATGTCTTCTTTCCACACT 58.854 47.619 0.00 0.00 0.00 3.55
89 90 1.400242 GCGCATGTCTTCTTTCCACAC 60.400 52.381 0.30 0.00 0.00 3.82
90 91 0.874390 GCGCATGTCTTCTTTCCACA 59.126 50.000 0.30 0.00 0.00 4.17
91 92 0.874390 TGCGCATGTCTTCTTTCCAC 59.126 50.000 5.66 0.00 0.00 4.02
92 93 1.159285 CTGCGCATGTCTTCTTTCCA 58.841 50.000 12.24 0.00 0.00 3.53
93 94 1.129437 GACTGCGCATGTCTTCTTTCC 59.871 52.381 23.86 4.73 0.00 3.13
94 95 1.201855 CGACTGCGCATGTCTTCTTTC 60.202 52.381 26.30 9.22 32.70 2.62
95 96 0.792640 CGACTGCGCATGTCTTCTTT 59.207 50.000 26.30 2.33 32.70 2.52
96 97 2.449548 CGACTGCGCATGTCTTCTT 58.550 52.632 26.30 2.90 32.70 2.52
97 98 4.175599 CGACTGCGCATGTCTTCT 57.824 55.556 26.30 3.47 32.70 2.85
131 132 3.104602 CTGGCATTGAAGCGGCTCG 62.105 63.158 1.45 0.00 34.64 5.03
132 133 2.796651 CTGGCATTGAAGCGGCTC 59.203 61.111 1.45 0.00 34.64 4.70
133 134 3.446570 GCTGGCATTGAAGCGGCT 61.447 61.111 0.00 0.00 34.64 5.52
137 138 3.695022 CTGGCGCTGGCATTGAAGC 62.695 63.158 7.64 2.56 42.47 3.86
138 139 2.488355 CTGGCGCTGGCATTGAAG 59.512 61.111 7.64 0.00 42.47 3.02
139 140 3.751246 GCTGGCGCTGGCATTGAA 61.751 61.111 7.64 0.00 42.47 2.69
146 147 4.827087 ACATCTCGCTGGCGCTGG 62.827 66.667 7.64 0.93 39.59 4.85
147 148 3.260483 GACATCTCGCTGGCGCTG 61.260 66.667 7.64 9.65 39.59 5.18
148 149 3.763356 TGACATCTCGCTGGCGCT 61.763 61.111 7.64 0.00 39.59 5.92
149 150 3.558411 GTGACATCTCGCTGGCGC 61.558 66.667 10.28 0.00 39.59 6.53
150 151 3.250323 CGTGACATCTCGCTGGCG 61.250 66.667 8.80 8.80 41.35 5.69
156 157 2.126071 AACGGGCGTGACATCTCG 60.126 61.111 0.00 0.00 36.12 4.04
157 158 1.078759 CAGAACGGGCGTGACATCTC 61.079 60.000 0.00 0.00 0.00 2.75
158 159 1.079819 CAGAACGGGCGTGACATCT 60.080 57.895 0.00 0.00 0.00 2.90
159 160 2.100631 CCAGAACGGGCGTGACATC 61.101 63.158 0.00 0.00 0.00 3.06
160 161 2.047274 CCAGAACGGGCGTGACAT 60.047 61.111 0.00 0.00 0.00 3.06
161 162 3.509137 GACCAGAACGGGCGTGACA 62.509 63.158 0.00 0.00 40.22 3.58
162 163 2.737376 GACCAGAACGGGCGTGAC 60.737 66.667 0.00 0.00 40.22 3.67
168 169 1.080705 GACGTCAGACCAGAACGGG 60.081 63.158 11.55 0.00 40.22 5.28
169 170 0.031585 TTGACGTCAGACCAGAACGG 59.968 55.000 19.11 0.00 42.50 4.44
170 171 1.721389 CATTGACGTCAGACCAGAACG 59.279 52.381 19.11 0.00 0.00 3.95
171 172 1.461127 GCATTGACGTCAGACCAGAAC 59.539 52.381 19.11 0.42 0.00 3.01
172 173 1.795768 GCATTGACGTCAGACCAGAA 58.204 50.000 19.11 1.90 0.00 3.02
173 174 0.388520 CGCATTGACGTCAGACCAGA 60.389 55.000 19.11 2.72 0.00 3.86
174 175 1.354337 CCGCATTGACGTCAGACCAG 61.354 60.000 19.11 10.24 0.00 4.00
175 176 1.374125 CCGCATTGACGTCAGACCA 60.374 57.895 19.11 3.98 0.00 4.02
176 177 1.078759 CTCCGCATTGACGTCAGACC 61.079 60.000 19.11 9.54 0.00 3.85
177 178 0.388649 ACTCCGCATTGACGTCAGAC 60.389 55.000 19.11 11.02 0.00 3.51
178 179 0.388520 CACTCCGCATTGACGTCAGA 60.389 55.000 19.11 11.08 0.00 3.27
179 180 1.354337 CCACTCCGCATTGACGTCAG 61.354 60.000 19.11 9.44 0.00 3.51
180 181 1.374125 CCACTCCGCATTGACGTCA 60.374 57.895 15.76 15.76 0.00 4.35
181 182 2.740714 GCCACTCCGCATTGACGTC 61.741 63.158 9.11 9.11 0.00 4.34
182 183 2.742372 GCCACTCCGCATTGACGT 60.742 61.111 0.00 0.00 0.00 4.34
183 184 3.499737 GGCCACTCCGCATTGACG 61.500 66.667 0.00 0.00 0.00 4.35
192 193 1.815840 GCTTTAGAGCGGCCACTCC 60.816 63.158 17.27 0.00 39.48 3.85
193 194 3.801129 GCTTTAGAGCGGCCACTC 58.199 61.111 13.15 13.15 39.48 3.51
201 202 3.120060 CCATATTCATGGCGCTTTAGAGC 60.120 47.826 7.64 0.00 45.29 4.09
202 203 4.675190 CCATATTCATGGCGCTTTAGAG 57.325 45.455 7.64 0.00 45.29 2.43
213 214 5.639506 CCGAAGTTAGCTACCCATATTCATG 59.360 44.000 0.00 0.00 0.00 3.07
214 215 5.280011 CCCGAAGTTAGCTACCCATATTCAT 60.280 44.000 0.00 0.00 0.00 2.57
215 216 4.039973 CCCGAAGTTAGCTACCCATATTCA 59.960 45.833 0.00 0.00 0.00 2.57
216 217 4.566987 CCCGAAGTTAGCTACCCATATTC 58.433 47.826 0.00 0.00 0.00 1.75
217 218 3.244457 GCCCGAAGTTAGCTACCCATATT 60.244 47.826 0.00 0.00 0.00 1.28
218 219 2.302157 GCCCGAAGTTAGCTACCCATAT 59.698 50.000 0.00 0.00 0.00 1.78
219 220 1.690352 GCCCGAAGTTAGCTACCCATA 59.310 52.381 0.00 0.00 0.00 2.74
220 221 0.468648 GCCCGAAGTTAGCTACCCAT 59.531 55.000 0.00 0.00 0.00 4.00
221 222 1.902556 GCCCGAAGTTAGCTACCCA 59.097 57.895 0.00 0.00 0.00 4.51
222 223 1.227176 CGCCCGAAGTTAGCTACCC 60.227 63.158 0.00 0.00 0.00 3.69
223 224 1.227176 CCGCCCGAAGTTAGCTACC 60.227 63.158 0.00 0.00 0.00 3.18
224 225 1.227176 CCCGCCCGAAGTTAGCTAC 60.227 63.158 0.00 0.00 0.00 3.58
225 226 0.971959 TTCCCGCCCGAAGTTAGCTA 60.972 55.000 0.00 0.00 0.00 3.32
226 227 1.833787 TTTCCCGCCCGAAGTTAGCT 61.834 55.000 0.00 0.00 0.00 3.32
227 228 1.366854 CTTTCCCGCCCGAAGTTAGC 61.367 60.000 0.00 0.00 0.00 3.09
228 229 0.743345 CCTTTCCCGCCCGAAGTTAG 60.743 60.000 0.00 0.00 0.00 2.34
229 230 1.297364 CCTTTCCCGCCCGAAGTTA 59.703 57.895 0.00 0.00 0.00 2.24
230 231 2.033602 CCTTTCCCGCCCGAAGTT 59.966 61.111 0.00 0.00 0.00 2.66
231 232 4.029809 CCCTTTCCCGCCCGAAGT 62.030 66.667 0.00 0.00 0.00 3.01
249 250 3.995506 AAATCCTCCCTTGCCGGCG 62.996 63.158 23.90 8.36 0.00 6.46
250 251 1.257750 AAAAATCCTCCCTTGCCGGC 61.258 55.000 22.73 22.73 0.00 6.13
251 252 0.532115 CAAAAATCCTCCCTTGCCGG 59.468 55.000 0.00 0.00 0.00 6.13
252 253 0.532115 CCAAAAATCCTCCCTTGCCG 59.468 55.000 0.00 0.00 0.00 5.69
253 254 0.904649 CCCAAAAATCCTCCCTTGCC 59.095 55.000 0.00 0.00 0.00 4.52
254 255 0.250234 GCCCAAAAATCCTCCCTTGC 59.750 55.000 0.00 0.00 0.00 4.01
255 256 0.532115 CGCCCAAAAATCCTCCCTTG 59.468 55.000 0.00 0.00 0.00 3.61
256 257 0.614697 CCGCCCAAAAATCCTCCCTT 60.615 55.000 0.00 0.00 0.00 3.95
257 258 1.000359 CCGCCCAAAAATCCTCCCT 60.000 57.895 0.00 0.00 0.00 4.20
258 259 2.058001 CCCGCCCAAAAATCCTCCC 61.058 63.158 0.00 0.00 0.00 4.30
259 260 1.000145 TCCCGCCCAAAAATCCTCC 60.000 57.895 0.00 0.00 0.00 4.30
260 261 0.610785 TGTCCCGCCCAAAAATCCTC 60.611 55.000 0.00 0.00 0.00 3.71
261 262 0.611896 CTGTCCCGCCCAAAAATCCT 60.612 55.000 0.00 0.00 0.00 3.24
262 263 1.604147 CCTGTCCCGCCCAAAAATCC 61.604 60.000 0.00 0.00 0.00 3.01
263 264 1.604147 CCCTGTCCCGCCCAAAAATC 61.604 60.000 0.00 0.00 0.00 2.17
264 265 1.609210 CCCTGTCCCGCCCAAAAAT 60.609 57.895 0.00 0.00 0.00 1.82
265 266 2.203567 CCCTGTCCCGCCCAAAAA 60.204 61.111 0.00 0.00 0.00 1.94
266 267 4.986708 GCCCTGTCCCGCCCAAAA 62.987 66.667 0.00 0.00 0.00 2.44
272 273 3.842925 TTTGACTGCCCTGTCCCGC 62.843 63.158 3.37 0.00 36.21 6.13
273 274 1.228124 TTTTGACTGCCCTGTCCCG 60.228 57.895 3.37 0.00 36.21 5.14
274 275 1.527433 GCTTTTGACTGCCCTGTCCC 61.527 60.000 3.37 0.00 36.21 4.46
275 276 1.856265 CGCTTTTGACTGCCCTGTCC 61.856 60.000 3.37 0.00 36.21 4.02
276 277 1.576421 CGCTTTTGACTGCCCTGTC 59.424 57.895 0.00 0.00 37.47 3.51
277 278 1.898574 CCGCTTTTGACTGCCCTGT 60.899 57.895 0.00 0.00 0.00 4.00
278 279 2.629656 CCCGCTTTTGACTGCCCTG 61.630 63.158 0.00 0.00 0.00 4.45
279 280 2.282462 CCCGCTTTTGACTGCCCT 60.282 61.111 0.00 0.00 0.00 5.19
280 281 2.597510 ACCCGCTTTTGACTGCCC 60.598 61.111 0.00 0.00 0.00 5.36
281 282 2.193536 ACACCCGCTTTTGACTGCC 61.194 57.895 0.00 0.00 0.00 4.85
282 283 1.008538 CACACCCGCTTTTGACTGC 60.009 57.895 0.00 0.00 0.00 4.40
283 284 1.654220 CCACACCCGCTTTTGACTG 59.346 57.895 0.00 0.00 0.00 3.51
284 285 2.193536 GCCACACCCGCTTTTGACT 61.194 57.895 0.00 0.00 0.00 3.41
285 286 2.335011 GCCACACCCGCTTTTGAC 59.665 61.111 0.00 0.00 0.00 3.18
286 287 2.124109 TGCCACACCCGCTTTTGA 60.124 55.556 0.00 0.00 0.00 2.69
287 288 2.336088 CTGCCACACCCGCTTTTG 59.664 61.111 0.00 0.00 0.00 2.44
288 289 2.123897 ACTGCCACACCCGCTTTT 60.124 55.556 0.00 0.00 0.00 2.27
289 290 2.697147 ATCACTGCCACACCCGCTTT 62.697 55.000 0.00 0.00 0.00 3.51
290 291 3.196207 ATCACTGCCACACCCGCTT 62.196 57.895 0.00 0.00 0.00 4.68
291 292 3.612247 GATCACTGCCACACCCGCT 62.612 63.158 0.00 0.00 0.00 5.52
292 293 3.127533 GATCACTGCCACACCCGC 61.128 66.667 0.00 0.00 0.00 6.13
293 294 2.436646 GGATCACTGCCACACCCG 60.437 66.667 0.00 0.00 0.00 5.28
294 295 2.436646 CGGATCACTGCCACACCC 60.437 66.667 0.00 0.00 0.00 4.61
295 296 2.436646 CCGGATCACTGCCACACC 60.437 66.667 0.00 0.00 0.00 4.16
296 297 1.741770 GTCCGGATCACTGCCACAC 60.742 63.158 7.81 0.00 0.00 3.82
297 298 1.552799 ATGTCCGGATCACTGCCACA 61.553 55.000 7.81 0.00 0.00 4.17
298 299 0.464036 TATGTCCGGATCACTGCCAC 59.536 55.000 7.81 0.00 0.00 5.01
299 300 1.070601 CATATGTCCGGATCACTGCCA 59.929 52.381 7.81 0.00 0.00 4.92
300 301 1.800805 CATATGTCCGGATCACTGCC 58.199 55.000 7.81 0.00 0.00 4.85
301 302 1.151668 GCATATGTCCGGATCACTGC 58.848 55.000 7.81 15.55 0.00 4.40
302 303 2.531522 TGCATATGTCCGGATCACTG 57.468 50.000 7.81 10.13 0.00 3.66
303 304 3.470709 CTTTGCATATGTCCGGATCACT 58.529 45.455 7.81 0.00 0.00 3.41
304 305 2.031682 GCTTTGCATATGTCCGGATCAC 60.032 50.000 7.81 0.00 0.00 3.06
305 306 2.221169 GCTTTGCATATGTCCGGATCA 58.779 47.619 7.81 8.44 0.00 2.92
306 307 1.537202 GGCTTTGCATATGTCCGGATC 59.463 52.381 7.81 1.69 0.00 3.36
307 308 1.143684 AGGCTTTGCATATGTCCGGAT 59.856 47.619 7.81 0.00 0.00 4.18
308 309 0.546122 AGGCTTTGCATATGTCCGGA 59.454 50.000 0.00 0.00 0.00 5.14
309 310 1.334869 GAAGGCTTTGCATATGTCCGG 59.665 52.381 0.00 0.00 0.00 5.14
310 311 2.292267 AGAAGGCTTTGCATATGTCCG 58.708 47.619 0.00 0.00 0.00 4.79
311 312 6.396829 AATTAGAAGGCTTTGCATATGTCC 57.603 37.500 0.00 0.00 0.00 4.02
312 313 7.260603 ACAAATTAGAAGGCTTTGCATATGTC 58.739 34.615 0.00 0.00 34.08 3.06
313 314 7.174107 ACAAATTAGAAGGCTTTGCATATGT 57.826 32.000 0.00 1.11 34.08 2.29
314 315 8.483307 AAACAAATTAGAAGGCTTTGCATATG 57.517 30.769 0.00 0.00 34.08 1.78
315 316 9.506018 AAAAACAAATTAGAAGGCTTTGCATAT 57.494 25.926 0.00 0.00 34.08 1.78
316 317 8.772705 CAAAAACAAATTAGAAGGCTTTGCATA 58.227 29.630 0.00 0.00 34.08 3.14
317 318 7.255208 CCAAAAACAAATTAGAAGGCTTTGCAT 60.255 33.333 0.00 0.00 34.08 3.96
318 319 6.038050 CCAAAAACAAATTAGAAGGCTTTGCA 59.962 34.615 0.00 0.00 34.08 4.08
319 320 6.038161 ACCAAAAACAAATTAGAAGGCTTTGC 59.962 34.615 0.00 0.00 34.08 3.68
320 321 7.552458 ACCAAAAACAAATTAGAAGGCTTTG 57.448 32.000 0.00 0.00 36.26 2.77
321 322 8.458052 CAAACCAAAAACAAATTAGAAGGCTTT 58.542 29.630 0.00 0.00 0.00 3.51
322 323 7.415095 GCAAACCAAAAACAAATTAGAAGGCTT 60.415 33.333 0.00 0.00 0.00 4.35
323 324 6.038161 GCAAACCAAAAACAAATTAGAAGGCT 59.962 34.615 0.00 0.00 0.00 4.58
324 325 6.198687 GCAAACCAAAAACAAATTAGAAGGC 58.801 36.000 0.00 0.00 0.00 4.35
325 326 6.256757 TCGCAAACCAAAAACAAATTAGAAGG 59.743 34.615 0.00 0.00 0.00 3.46
326 327 7.227992 TCGCAAACCAAAAACAAATTAGAAG 57.772 32.000 0.00 0.00 0.00 2.85
327 328 7.596749 TTCGCAAACCAAAAACAAATTAGAA 57.403 28.000 0.00 0.00 0.00 2.10
328 329 7.596749 TTTCGCAAACCAAAAACAAATTAGA 57.403 28.000 0.00 0.00 0.00 2.10
329 330 8.660968 TTTTTCGCAAACCAAAAACAAATTAG 57.339 26.923 0.00 0.00 0.00 1.73
353 354 3.586100 AGGCTGTTTGAACGTGTTTTT 57.414 38.095 0.00 0.00 0.00 1.94
354 355 3.586100 AAGGCTGTTTGAACGTGTTTT 57.414 38.095 0.00 0.00 0.00 2.43
355 356 4.082679 TGTTAAGGCTGTTTGAACGTGTTT 60.083 37.500 0.00 0.00 0.00 2.83
356 357 3.440872 TGTTAAGGCTGTTTGAACGTGTT 59.559 39.130 0.00 0.00 0.00 3.32
357 358 3.011119 TGTTAAGGCTGTTTGAACGTGT 58.989 40.909 0.00 0.00 0.00 4.49
358 359 3.684103 TGTTAAGGCTGTTTGAACGTG 57.316 42.857 0.00 0.00 0.00 4.49
359 360 6.651643 TGTATATGTTAAGGCTGTTTGAACGT 59.348 34.615 0.00 0.00 0.00 3.99
360 361 7.064134 TCTGTATATGTTAAGGCTGTTTGAACG 59.936 37.037 0.00 0.00 0.00 3.95
361 362 8.175716 GTCTGTATATGTTAAGGCTGTTTGAAC 58.824 37.037 0.00 0.00 0.00 3.18
362 363 7.335924 GGTCTGTATATGTTAAGGCTGTTTGAA 59.664 37.037 0.00 0.00 0.00 2.69
363 364 6.821665 GGTCTGTATATGTTAAGGCTGTTTGA 59.178 38.462 0.00 0.00 0.00 2.69
364 365 6.038271 GGGTCTGTATATGTTAAGGCTGTTTG 59.962 42.308 0.00 0.00 0.00 2.93
365 366 6.120220 GGGTCTGTATATGTTAAGGCTGTTT 58.880 40.000 0.00 0.00 0.00 2.83
366 367 5.190925 TGGGTCTGTATATGTTAAGGCTGTT 59.809 40.000 0.00 0.00 0.00 3.16
367 368 4.719773 TGGGTCTGTATATGTTAAGGCTGT 59.280 41.667 0.00 0.00 0.00 4.40
368 369 5.057149 GTGGGTCTGTATATGTTAAGGCTG 58.943 45.833 0.00 0.00 0.00 4.85
369 370 4.202223 CGTGGGTCTGTATATGTTAAGGCT 60.202 45.833 0.00 0.00 0.00 4.58
370 371 4.056050 CGTGGGTCTGTATATGTTAAGGC 58.944 47.826 0.00 0.00 0.00 4.35
371 372 5.163488 TGTCGTGGGTCTGTATATGTTAAGG 60.163 44.000 0.00 0.00 0.00 2.69
372 373 5.898174 TGTCGTGGGTCTGTATATGTTAAG 58.102 41.667 0.00 0.00 0.00 1.85
373 374 5.653330 TCTGTCGTGGGTCTGTATATGTTAA 59.347 40.000 0.00 0.00 0.00 2.01
374 375 5.195185 TCTGTCGTGGGTCTGTATATGTTA 58.805 41.667 0.00 0.00 0.00 2.41
383 384 1.448540 GCCATCTGTCGTGGGTCTG 60.449 63.158 0.00 0.00 37.22 3.51
387 388 1.670811 GTATTTGCCATCTGTCGTGGG 59.329 52.381 0.00 0.00 37.22 4.61
389 390 1.267532 GCGTATTTGCCATCTGTCGTG 60.268 52.381 0.00 0.00 0.00 4.35
390 391 1.006832 GCGTATTTGCCATCTGTCGT 58.993 50.000 0.00 0.00 0.00 4.34
395 396 0.392461 ACCGTGCGTATTTGCCATCT 60.392 50.000 0.00 0.00 0.00 2.90
405 406 1.328069 CAAGTGTTTGAACCGTGCGTA 59.672 47.619 0.00 0.00 36.36 4.42
421 422 1.663702 CTTCGAACCGTCCGCAAGT 60.664 57.895 0.00 0.00 0.00 3.16
442 443 3.627395 ACCGATTGCTTACTCCAATGA 57.373 42.857 0.00 0.00 33.34 2.57
444 445 4.442706 CACTACCGATTGCTTACTCCAAT 58.557 43.478 0.00 0.00 35.73 3.16
504 505 5.278463 CGGTGAAGATCATGAACCACTTTTT 60.278 40.000 12.79 0.00 0.00 1.94
505 506 4.216257 CGGTGAAGATCATGAACCACTTTT 59.784 41.667 12.79 0.00 0.00 2.27
506 507 3.753272 CGGTGAAGATCATGAACCACTTT 59.247 43.478 12.79 0.00 0.00 2.66
507 508 3.338249 CGGTGAAGATCATGAACCACTT 58.662 45.455 12.79 9.88 0.00 3.16
508 509 2.936993 GCGGTGAAGATCATGAACCACT 60.937 50.000 12.79 2.64 0.00 4.00
509 510 1.398390 GCGGTGAAGATCATGAACCAC 59.602 52.381 12.79 11.28 0.00 4.16
510 511 1.003003 TGCGGTGAAGATCATGAACCA 59.997 47.619 12.79 1.00 0.00 3.67
511 512 1.737838 TGCGGTGAAGATCATGAACC 58.262 50.000 0.00 0.84 0.00 3.62
512 513 2.474526 CGTTGCGGTGAAGATCATGAAC 60.475 50.000 0.00 0.00 0.00 3.18
513 514 1.731709 CGTTGCGGTGAAGATCATGAA 59.268 47.619 0.00 0.00 0.00 2.57
514 515 1.067213 TCGTTGCGGTGAAGATCATGA 60.067 47.619 0.00 0.00 0.00 3.07
515 516 1.325640 CTCGTTGCGGTGAAGATCATG 59.674 52.381 0.00 0.00 0.00 3.07
535 536 1.905922 GCCGAGAGCAACTTCACTGC 61.906 60.000 0.00 0.00 42.97 4.40
549 550 1.153745 GTACACTCAGCAGGCCGAG 60.154 63.158 0.00 0.00 35.30 4.63
754 755 2.745037 GGGTGCCGTGGTCTTGTA 59.255 61.111 0.00 0.00 0.00 2.41
869 873 4.514577 AATGGTCGGGCTCGCTCG 62.515 66.667 0.00 4.51 42.03 5.03
870 874 2.125106 AAATGGTCGGGCTCGCTC 60.125 61.111 0.00 0.00 36.13 5.03
871 875 2.125106 GAAATGGTCGGGCTCGCT 60.125 61.111 0.00 0.00 36.13 4.93
872 876 2.125106 AGAAATGGTCGGGCTCGC 60.125 61.111 0.00 0.00 36.13 5.03
884 888 2.666317 CCTTTTATGGGGCGGAGAAAT 58.334 47.619 0.00 0.00 0.00 2.17
984 993 4.619140 ATAGTCGGCCGCGCGTAC 62.619 66.667 29.95 20.11 0.00 3.67
2305 2375 2.813754 CCCACACATCGAACACATTCTT 59.186 45.455 0.00 0.00 32.12 2.52
2398 2476 8.857098 TGTTACTAGTCCATGTTACTATCCATC 58.143 37.037 0.00 0.02 0.00 3.51
2403 2481 7.442656 GGCATGTTACTAGTCCATGTTACTAT 58.557 38.462 24.95 0.00 38.53 2.12
2485 2563 9.914834 ACAACCTAATAAATAAAGTGCTCCATA 57.085 29.630 0.00 0.00 0.00 2.74
2491 2569 9.983804 GTGTCTACAACCTAATAAATAAAGTGC 57.016 33.333 0.00 0.00 0.00 4.40
2519 2597 8.314021 AGTAACATCACACATATCAAGACAAGA 58.686 33.333 0.00 0.00 0.00 3.02
2524 2602 9.750125 GTATGAGTAACATCACACATATCAAGA 57.250 33.333 0.00 0.00 40.07 3.02
2582 2660 6.255020 GTGGCATGCAATAAATGAAGAAAGAG 59.745 38.462 21.36 0.00 0.00 2.85
2631 2709 8.021973 GGGAGTAACATAGATAGTAACATCACG 58.978 40.741 0.00 0.00 0.00 4.35
2644 2722 2.104967 CCACGGTGGGAGTAACATAGA 58.895 52.381 19.63 0.00 32.67 1.98
2659 2737 4.775236 ACTAGTACTAAGACTACCCACGG 58.225 47.826 3.76 0.00 0.00 4.94
2660 2738 9.202273 CTTATACTAGTACTAAGACTACCCACG 57.798 40.741 18.04 0.00 0.00 4.94
2672 2750 8.572884 TCCCCTCTTGTCTTATACTAGTACTA 57.427 38.462 4.31 1.89 33.29 1.82
2674 2752 7.559170 TGTTCCCCTCTTGTCTTATACTAGTAC 59.441 40.741 4.31 0.00 33.29 2.73
2675 2753 7.645942 TGTTCCCCTCTTGTCTTATACTAGTA 58.354 38.462 4.77 4.77 33.29 1.82
2677 2755 6.041069 CCTGTTCCCCTCTTGTCTTATACTAG 59.959 46.154 0.00 0.00 32.84 2.57
2678 2756 5.897824 CCTGTTCCCCTCTTGTCTTATACTA 59.102 44.000 0.00 0.00 0.00 1.82
2679 2757 4.717280 CCTGTTCCCCTCTTGTCTTATACT 59.283 45.833 0.00 0.00 0.00 2.12
2681 2759 4.695606 ACCTGTTCCCCTCTTGTCTTATA 58.304 43.478 0.00 0.00 0.00 0.98
2788 5597 7.941919 TGACAACACTCCACTCATATATACTC 58.058 38.462 0.00 0.00 0.00 2.59
2865 6509 3.013921 TGTATGGAGGGTCAATTTTCGC 58.986 45.455 0.00 0.00 0.00 4.70
2866 6510 5.835113 ATTGTATGGAGGGTCAATTTTCG 57.165 39.130 0.00 0.00 0.00 3.46
2915 6560 7.709613 CGGTGTTAAAGCCTAAGACATATTAGT 59.290 37.037 5.99 0.00 31.94 2.24
2916 6561 7.170998 CCGGTGTTAAAGCCTAAGACATATTAG 59.829 40.741 0.00 0.00 33.37 1.73
2918 6563 5.820947 CCGGTGTTAAAGCCTAAGACATATT 59.179 40.000 0.00 0.00 0.00 1.28
2919 6564 5.104652 ACCGGTGTTAAAGCCTAAGACATAT 60.105 40.000 6.12 0.00 0.00 1.78
2921 6566 3.008704 ACCGGTGTTAAAGCCTAAGACAT 59.991 43.478 6.12 0.00 0.00 3.06
2922 6567 2.369532 ACCGGTGTTAAAGCCTAAGACA 59.630 45.455 6.12 0.00 0.00 3.41
2923 6568 2.740447 CACCGGTGTTAAAGCCTAAGAC 59.260 50.000 26.95 0.00 0.00 3.01
2925 6570 1.467342 GCACCGGTGTTAAAGCCTAAG 59.533 52.381 33.92 5.88 0.00 2.18
2926 6571 1.072648 AGCACCGGTGTTAAAGCCTAA 59.927 47.619 33.92 0.00 0.00 2.69
2927 6572 0.688487 AGCACCGGTGTTAAAGCCTA 59.312 50.000 33.92 0.00 0.00 3.93
2929 6574 1.873863 GAGCACCGGTGTTAAAGCC 59.126 57.895 33.92 16.50 0.00 4.35
2930 6575 1.495951 CGAGCACCGGTGTTAAAGC 59.504 57.895 33.92 19.70 33.91 3.51
2931 6576 1.225376 TGCGAGCACCGGTGTTAAAG 61.225 55.000 33.92 22.78 39.04 1.85
2932 6577 0.604243 ATGCGAGCACCGGTGTTAAA 60.604 50.000 33.92 17.98 39.04 1.52
2933 6578 0.604243 AATGCGAGCACCGGTGTTAA 60.604 50.000 33.92 18.33 39.04 2.01
2934 6579 0.604243 AAATGCGAGCACCGGTGTTA 60.604 50.000 33.92 15.48 39.04 2.41
2957 6605 9.104965 ACATCGTCGAAAATCCTGAAATAAATA 57.895 29.630 0.00 0.00 0.00 1.40
2966 6614 3.289702 CGAACATCGTCGAAAATCCTG 57.710 47.619 0.00 0.00 43.86 3.86
3011 6659 2.293677 AGTCACCACAGACGTCTTGTAG 59.706 50.000 17.26 12.82 43.24 2.74
3012 6660 2.304092 AGTCACCACAGACGTCTTGTA 58.696 47.619 17.26 0.14 43.24 2.41
3015 6663 1.266175 CGTAGTCACCACAGACGTCTT 59.734 52.381 17.26 4.83 43.24 3.01
3041 6692 6.780457 ACTAAGCTGGCACAATATTTTGAT 57.220 33.333 5.78 0.00 38.70 2.57
3052 6703 5.294552 CACCTTTAAGATACTAAGCTGGCAC 59.705 44.000 0.00 0.00 0.00 5.01
3071 6722 6.263168 GCACACATTATCCTTATAAGCACCTT 59.737 38.462 6.99 0.00 31.18 3.50
3083 6734 0.391130 ACGCACGCACACATTATCCT 60.391 50.000 0.00 0.00 0.00 3.24
3113 6764 4.334759 GCAGATGCTCACATACACTCATTT 59.665 41.667 0.00 0.00 36.35 2.32
3114 6765 3.875727 GCAGATGCTCACATACACTCATT 59.124 43.478 0.00 0.00 36.35 2.57
3127 6778 3.438087 ACACAGTACAATTGCAGATGCTC 59.562 43.478 5.05 0.00 42.66 4.26
3173 6825 1.472082 TGCAGTGGCCAAATATTGACG 59.528 47.619 7.24 0.00 40.13 4.35
3176 6828 6.256321 GTCTAAAATGCAGTGGCCAAATATTG 59.744 38.462 7.24 2.28 40.13 1.90
3177 6829 6.340522 GTCTAAAATGCAGTGGCCAAATATT 58.659 36.000 7.24 3.26 40.13 1.28
3178 6830 5.163416 GGTCTAAAATGCAGTGGCCAAATAT 60.163 40.000 7.24 0.00 40.13 1.28
3179 6831 4.159506 GGTCTAAAATGCAGTGGCCAAATA 59.840 41.667 7.24 0.00 40.13 1.40
3180 6832 3.055891 GGTCTAAAATGCAGTGGCCAAAT 60.056 43.478 7.24 0.00 40.13 2.32
3181 6833 2.298729 GGTCTAAAATGCAGTGGCCAAA 59.701 45.455 7.24 0.00 40.13 3.28
3182 6834 1.892474 GGTCTAAAATGCAGTGGCCAA 59.108 47.619 7.24 0.00 40.13 4.52
3183 6835 1.544724 GGTCTAAAATGCAGTGGCCA 58.455 50.000 0.00 0.00 40.13 5.36
3184 6836 0.451783 CGGTCTAAAATGCAGTGGCC 59.548 55.000 0.00 0.00 40.13 5.36
3185 6837 1.135689 CACGGTCTAAAATGCAGTGGC 60.136 52.381 0.00 0.00 41.68 5.01
3186 6838 1.135689 GCACGGTCTAAAATGCAGTGG 60.136 52.381 0.00 0.00 38.00 4.00
3189 6841 3.996825 GGCACGGTCTAAAATGCAG 57.003 52.632 0.00 0.00 39.92 4.41
3242 6894 4.023279 CCCACAAACATCACGAAAATCAGA 60.023 41.667 0.00 0.00 0.00 3.27
3243 6895 4.229096 CCCACAAACATCACGAAAATCAG 58.771 43.478 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.