Multiple sequence alignment - TraesCS6D01G202500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G202500 chr6D 100.000 3167 0 0 1 3167 285868726 285871892 0.000000e+00 5849.0
1 TraesCS6D01G202500 chr6B 93.610 2817 118 35 1 2789 446835267 446838049 0.000000e+00 4148.0
2 TraesCS6D01G202500 chr6B 91.216 148 9 2 2789 2934 446838112 446838257 6.930000e-47 198.0
3 TraesCS6D01G202500 chr6A 94.360 2571 114 18 1 2551 407084596 407087155 0.000000e+00 3916.0
4 TraesCS6D01G202500 chr6A 91.736 121 8 1 2797 2917 407087155 407087273 1.950000e-37 167.0
5 TraesCS6D01G202500 chr2D 80.120 996 186 11 1009 1998 451287829 451288818 0.000000e+00 732.0
6 TraesCS6D01G202500 chr2D 82.192 146 19 4 604 748 451287397 451287536 5.550000e-23 119.0
7 TraesCS6D01G202500 chr2B 81.285 903 169 0 1009 1911 531466730 531467632 0.000000e+00 732.0
8 TraesCS6D01G202500 chr2B 82.192 146 19 4 604 748 531466328 531466467 5.550000e-23 119.0
9 TraesCS6D01G202500 chr2B 88.406 69 7 1 3046 3114 742674699 742674632 7.280000e-12 82.4
10 TraesCS6D01G202500 chr2B 92.308 39 2 1 3046 3084 198247180 198247143 2.000000e-03 54.7
11 TraesCS6D01G202500 chr5D 83.019 106 17 1 2682 2787 401400760 401400656 9.350000e-16 95.3
12 TraesCS6D01G202500 chr3D 90.278 72 5 2 3046 3117 94848772 94848841 3.360000e-15 93.5
13 TraesCS6D01G202500 chr3D 95.000 40 2 0 3079 3118 63149996 63149957 2.640000e-06 63.9
14 TraesCS6D01G202500 chr5B 86.585 82 7 4 3043 3122 315897460 315897539 1.560000e-13 87.9
15 TraesCS6D01G202500 chr5B 87.143 70 6 3 3046 3114 445185309 445185242 3.390000e-10 76.8
16 TraesCS6D01G202500 chr1B 88.889 72 7 1 3046 3117 526264677 526264607 1.560000e-13 87.9
17 TraesCS6D01G202500 chr1B 88.235 68 7 1 3043 3110 267997509 267997575 2.620000e-11 80.5
18 TraesCS6D01G202500 chr2A 86.486 74 9 1 3043 3116 303223092 303223164 2.620000e-11 80.5
19 TraesCS6D01G202500 chr1A 86.957 69 8 1 3046 3114 531988354 531988287 3.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G202500 chr6D 285868726 285871892 3166 False 5849.0 5849 100.0000 1 3167 1 chr6D.!!$F1 3166
1 TraesCS6D01G202500 chr6B 446835267 446838257 2990 False 2173.0 4148 92.4130 1 2934 2 chr6B.!!$F1 2933
2 TraesCS6D01G202500 chr6A 407084596 407087273 2677 False 2041.5 3916 93.0480 1 2917 2 chr6A.!!$F1 2916
3 TraesCS6D01G202500 chr2D 451287397 451288818 1421 False 425.5 732 81.1560 604 1998 2 chr2D.!!$F1 1394
4 TraesCS6D01G202500 chr2B 531466328 531467632 1304 False 425.5 732 81.7385 604 1911 2 chr2B.!!$F1 1307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 162 1.003851 TTCGATCCGCGGTGAAATTC 58.996 50.0 27.15 12.15 41.33 2.17 F
515 537 1.024579 CCTGGTGAAACGGGGAATCG 61.025 60.0 0.00 0.00 38.12 3.34 F
1930 1997 0.620556 GGAGAGGCTGAATGTTGGGA 59.379 55.0 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1458 0.035056 ATTCAGGAAGGCAACCTCGG 60.035 55.0 0.0 0.0 35.35 4.63 R
2073 2140 0.323999 AAGCATCCATCTTGCAGCCA 60.324 50.0 0.0 0.0 42.62 4.75 R
3133 3296 0.028902 GGTCAACAACGCCAACACTC 59.971 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.371097 GATCCGTCGCTTGCTCCCA 62.371 63.158 0.00 0.00 0.00 4.37
46 56 1.337817 CTCGAGGTTTGTGACGAGCG 61.338 60.000 3.91 0.00 43.71 5.03
151 162 1.003851 TTCGATCCGCGGTGAAATTC 58.996 50.000 27.15 12.15 41.33 2.17
161 172 2.481185 GCGGTGAAATTCGTTTCCTGTA 59.519 45.455 0.00 0.00 0.00 2.74
287 302 6.683974 ATATGCAACACAGTCAGGAATTAC 57.316 37.500 0.00 0.00 0.00 1.89
432 453 6.060788 GCCTGGAATAGTCATCTTCAAATCT 58.939 40.000 0.00 0.00 0.00 2.40
507 529 7.360607 CCTTTACTTTATGTACCTGGTGAAACG 60.361 40.741 10.23 0.00 38.12 3.60
515 537 1.024579 CCTGGTGAAACGGGGAATCG 61.025 60.000 0.00 0.00 38.12 3.34
534 556 6.809196 GGAATCGCAGAAGGATATTAGTACTG 59.191 42.308 5.39 0.00 43.58 2.74
565 587 4.508124 CCTCGCAATATGTTCTGTACTTCC 59.492 45.833 0.00 0.00 0.00 3.46
581 603 4.360951 ACTTCCATCGTTTCTAACCCAA 57.639 40.909 0.00 0.00 0.00 4.12
593 615 4.028993 TCTAACCCAAATCAACCCACTC 57.971 45.455 0.00 0.00 0.00 3.51
786 813 2.350868 GCTCCTCCTTTCTTTTCGTTGC 60.351 50.000 0.00 0.00 0.00 4.17
879 906 3.169099 CCATCCTGATAATCCCTCTCGT 58.831 50.000 0.00 0.00 0.00 4.18
932 968 7.421684 TCCCCTTTCAATTCATCTTCCTAAAT 58.578 34.615 0.00 0.00 0.00 1.40
1038 1105 3.380393 TGGGTTCGAGGGATATGAGAAA 58.620 45.455 0.00 0.00 0.00 2.52
1391 1458 2.805099 CTCCACACAAGAACTTCTCTGC 59.195 50.000 0.00 0.00 33.37 4.26
1415 1482 1.260544 GTTGCCTTCCTGAATGGCTT 58.739 50.000 16.13 0.00 46.23 4.35
1592 1659 6.127479 GCTTCTATCTTCTTCAAGACCTCTGA 60.127 42.308 0.00 0.00 41.64 3.27
1860 1927 1.203001 TCCTTTGGCCCGTCTGAATTT 60.203 47.619 0.00 0.00 0.00 1.82
1889 1956 2.577059 GACCATCTTCGGCGGTCA 59.423 61.111 7.21 0.00 46.98 4.02
1930 1997 0.620556 GGAGAGGCTGAATGTTGGGA 59.379 55.000 0.00 0.00 0.00 4.37
2018 2085 1.373497 CTGCTGTCGGCGAAGACTT 60.373 57.895 12.92 0.00 45.43 3.01
2069 2136 3.005261 TGCAACGTTGATGGCAATTTAGT 59.995 39.130 31.62 0.00 36.22 2.24
2070 2137 3.987220 GCAACGTTGATGGCAATTTAGTT 59.013 39.130 31.62 0.00 36.22 2.24
2072 2139 5.060446 GCAACGTTGATGGCAATTTAGTTAC 59.940 40.000 31.62 3.74 36.22 2.50
2073 2140 6.378582 CAACGTTGATGGCAATTTAGTTACT 58.621 36.000 23.90 0.00 36.22 2.24
2078 2145 4.398988 TGATGGCAATTTAGTTACTGGCTG 59.601 41.667 0.00 0.00 35.51 4.85
2224 2295 6.293462 GCGTCAGTTTGTTCTTAGATTTCCTT 60.293 38.462 0.00 0.00 0.00 3.36
2232 2303 6.306987 TGTTCTTAGATTTCCTTTTCCTGCT 58.693 36.000 0.00 0.00 0.00 4.24
2233 2304 6.431234 TGTTCTTAGATTTCCTTTTCCTGCTC 59.569 38.462 0.00 0.00 0.00 4.26
2234 2305 5.501156 TCTTAGATTTCCTTTTCCTGCTCC 58.499 41.667 0.00 0.00 0.00 4.70
2235 2306 5.251700 TCTTAGATTTCCTTTTCCTGCTCCT 59.748 40.000 0.00 0.00 0.00 3.69
2236 2307 3.694926 AGATTTCCTTTTCCTGCTCCTG 58.305 45.455 0.00 0.00 0.00 3.86
2237 2308 3.075134 AGATTTCCTTTTCCTGCTCCTGT 59.925 43.478 0.00 0.00 0.00 4.00
2242 2313 2.093235 CCTTTTCCTGCTCCTGTCCTAG 60.093 54.545 0.00 0.00 0.00 3.02
2247 2319 2.092321 TCCTGCTCCTGTCCTAGTACTC 60.092 54.545 0.00 0.00 0.00 2.59
2256 2328 4.585162 CCTGTCCTAGTACTCTGTTATGGG 59.415 50.000 0.00 0.00 0.00 4.00
2268 2340 1.070914 TGTTATGGGCAAGTGACGTGA 59.929 47.619 1.91 0.00 0.00 4.35
2318 2391 2.859806 GCGAATGTATGGAAATGCCTGC 60.860 50.000 0.00 0.00 37.63 4.85
2346 2419 7.505248 TCTGGCTGCATGGTTTATGAATATAAA 59.495 33.333 0.50 0.00 39.21 1.40
2497 2570 0.453390 GGTACTAGTACCGCTTGCGT 59.547 55.000 31.26 5.01 45.21 5.24
2506 2579 4.435425 AGTACCGCTTGCGTTGATTATTA 58.565 39.130 13.97 0.00 0.00 0.98
2556 2629 7.145932 TCGATGCTCGATAAGAAAGATATGA 57.854 36.000 4.47 0.00 44.82 2.15
2587 2660 4.947147 GCACTTGGGTGGCGTCCA 62.947 66.667 0.00 0.00 43.18 4.02
2598 2679 2.004733 GTGGCGTCCAACACCTTATAC 58.995 52.381 0.00 0.00 34.18 1.47
2608 2689 0.249322 CACCTTATACGTGGAGGCCG 60.249 60.000 12.03 2.71 33.78 6.13
2644 2744 2.959516 TGTAGCATCAGTCAAGTTCGG 58.040 47.619 0.00 0.00 0.00 4.30
2645 2745 1.661112 GTAGCATCAGTCAAGTTCGGC 59.339 52.381 0.00 0.00 0.00 5.54
2646 2746 0.674895 AGCATCAGTCAAGTTCGGCC 60.675 55.000 0.00 0.00 0.00 6.13
2647 2747 1.648467 GCATCAGTCAAGTTCGGCCC 61.648 60.000 0.00 0.00 0.00 5.80
2648 2748 0.321564 CATCAGTCAAGTTCGGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
2649 2749 0.620556 ATCAGTCAAGTTCGGCCCAT 59.379 50.000 0.00 0.00 0.00 4.00
2650 2750 1.271856 TCAGTCAAGTTCGGCCCATA 58.728 50.000 0.00 0.00 0.00 2.74
2651 2751 1.066430 TCAGTCAAGTTCGGCCCATAC 60.066 52.381 0.00 0.00 0.00 2.39
2652 2752 0.981183 AGTCAAGTTCGGCCCATACA 59.019 50.000 0.00 0.00 0.00 2.29
2653 2753 1.066143 AGTCAAGTTCGGCCCATACAG 60.066 52.381 0.00 0.00 0.00 2.74
2654 2754 0.981183 TCAAGTTCGGCCCATACAGT 59.019 50.000 0.00 0.00 0.00 3.55
2655 2755 1.086696 CAAGTTCGGCCCATACAGTG 58.913 55.000 0.00 0.00 0.00 3.66
2658 2758 1.480954 AGTTCGGCCCATACAGTGTAG 59.519 52.381 9.25 1.46 0.00 2.74
2661 2761 2.181125 TCGGCCCATACAGTGTAGAAA 58.819 47.619 9.25 0.00 0.00 2.52
2671 2771 6.648310 CCATACAGTGTAGAAATGCTGGATAG 59.352 42.308 9.25 0.00 31.32 2.08
2675 2775 4.716784 AGTGTAGAAATGCTGGATAGTGGA 59.283 41.667 0.00 0.00 0.00 4.02
2681 2781 4.719026 AATGCTGGATAGTGGATGATGT 57.281 40.909 0.00 0.00 0.00 3.06
2684 2784 4.482990 TGCTGGATAGTGGATGATGTAGA 58.517 43.478 0.00 0.00 0.00 2.59
2685 2785 4.901250 TGCTGGATAGTGGATGATGTAGAA 59.099 41.667 0.00 0.00 0.00 2.10
2686 2786 5.366477 TGCTGGATAGTGGATGATGTAGAAA 59.634 40.000 0.00 0.00 0.00 2.52
2687 2787 6.043590 TGCTGGATAGTGGATGATGTAGAAAT 59.956 38.462 0.00 0.00 0.00 2.17
2688 2788 6.370994 GCTGGATAGTGGATGATGTAGAAATG 59.629 42.308 0.00 0.00 0.00 2.32
2689 2789 7.379059 TGGATAGTGGATGATGTAGAAATGT 57.621 36.000 0.00 0.00 0.00 2.71
2690 2790 7.805163 TGGATAGTGGATGATGTAGAAATGTT 58.195 34.615 0.00 0.00 0.00 2.71
2691 2791 7.716560 TGGATAGTGGATGATGTAGAAATGTTG 59.283 37.037 0.00 0.00 0.00 3.33
2692 2792 7.173907 GGATAGTGGATGATGTAGAAATGTTGG 59.826 40.741 0.00 0.00 0.00 3.77
2693 2793 6.065976 AGTGGATGATGTAGAAATGTTGGA 57.934 37.500 0.00 0.00 0.00 3.53
2694 2794 6.666678 AGTGGATGATGTAGAAATGTTGGAT 58.333 36.000 0.00 0.00 0.00 3.41
2695 2795 7.805163 AGTGGATGATGTAGAAATGTTGGATA 58.195 34.615 0.00 0.00 0.00 2.59
2696 2796 7.935755 AGTGGATGATGTAGAAATGTTGGATAG 59.064 37.037 0.00 0.00 0.00 2.08
2697 2797 7.716998 GTGGATGATGTAGAAATGTTGGATAGT 59.283 37.037 0.00 0.00 0.00 2.12
2698 2798 7.716560 TGGATGATGTAGAAATGTTGGATAGTG 59.283 37.037 0.00 0.00 0.00 2.74
2699 2799 7.173907 GGATGATGTAGAAATGTTGGATAGTGG 59.826 40.741 0.00 0.00 0.00 4.00
2700 2800 7.194112 TGATGTAGAAATGTTGGATAGTGGA 57.806 36.000 0.00 0.00 0.00 4.02
2701 2801 7.805163 TGATGTAGAAATGTTGGATAGTGGAT 58.195 34.615 0.00 0.00 0.00 3.41
2702 2802 7.716560 TGATGTAGAAATGTTGGATAGTGGATG 59.283 37.037 0.00 0.00 0.00 3.51
2703 2803 7.194112 TGTAGAAATGTTGGATAGTGGATGA 57.806 36.000 0.00 0.00 0.00 2.92
2704 2804 7.805163 TGTAGAAATGTTGGATAGTGGATGAT 58.195 34.615 0.00 0.00 0.00 2.45
2705 2805 7.716560 TGTAGAAATGTTGGATAGTGGATGATG 59.283 37.037 0.00 0.00 0.00 3.07
2706 2806 6.066690 AGAAATGTTGGATAGTGGATGATGG 58.933 40.000 0.00 0.00 0.00 3.51
2707 2807 5.651612 AATGTTGGATAGTGGATGATGGA 57.348 39.130 0.00 0.00 0.00 3.41
2708 2808 4.694760 TGTTGGATAGTGGATGATGGAG 57.305 45.455 0.00 0.00 0.00 3.86
2709 2809 4.297768 TGTTGGATAGTGGATGATGGAGA 58.702 43.478 0.00 0.00 0.00 3.71
2710 2810 4.346127 TGTTGGATAGTGGATGATGGAGAG 59.654 45.833 0.00 0.00 0.00 3.20
2711 2811 4.475919 TGGATAGTGGATGATGGAGAGA 57.524 45.455 0.00 0.00 0.00 3.10
2712 2812 4.155709 TGGATAGTGGATGATGGAGAGAC 58.844 47.826 0.00 0.00 0.00 3.36
2713 2813 4.155709 GGATAGTGGATGATGGAGAGACA 58.844 47.826 0.00 0.00 0.00 3.41
2752 2852 1.937546 GCAATCCAAGCAAGGTCCCG 61.938 60.000 0.00 0.00 0.00 5.14
2771 2871 2.125912 AGAGCATCACGCACCGTC 60.126 61.111 0.00 0.00 46.13 4.79
2819 2982 2.361610 CAGGTGATGGTGGTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
2820 2983 2.858476 AGGTGATGGTGGTGGCCA 60.858 61.111 0.00 0.00 43.48 5.36
2920 3083 1.356398 GAACCCCCAACCCATCAAGTA 59.644 52.381 0.00 0.00 0.00 2.24
2928 3091 4.252878 CCAACCCATCAAGTATTTTTGGC 58.747 43.478 0.00 0.00 0.00 4.52
2934 3097 2.235016 TCAAGTATTTTTGGCCTGCGT 58.765 42.857 3.32 0.00 0.00 5.24
2935 3098 3.413327 TCAAGTATTTTTGGCCTGCGTA 58.587 40.909 3.32 0.00 0.00 4.42
2936 3099 4.013728 TCAAGTATTTTTGGCCTGCGTAT 58.986 39.130 3.32 0.00 0.00 3.06
2937 3100 5.186942 TCAAGTATTTTTGGCCTGCGTATA 58.813 37.500 3.32 0.00 0.00 1.47
2938 3101 5.648526 TCAAGTATTTTTGGCCTGCGTATAA 59.351 36.000 3.32 0.00 0.00 0.98
2939 3102 5.751243 AGTATTTTTGGCCTGCGTATAAG 57.249 39.130 3.32 0.00 0.00 1.73
2940 3103 5.190677 AGTATTTTTGGCCTGCGTATAAGT 58.809 37.500 3.32 0.00 0.00 2.24
2941 3104 5.650703 AGTATTTTTGGCCTGCGTATAAGTT 59.349 36.000 3.32 0.00 0.00 2.66
2942 3105 4.428615 TTTTTGGCCTGCGTATAAGTTC 57.571 40.909 3.32 0.00 0.00 3.01
2943 3106 2.032680 TTGGCCTGCGTATAAGTTCC 57.967 50.000 3.32 0.00 0.00 3.62
2944 3107 0.906066 TGGCCTGCGTATAAGTTCCA 59.094 50.000 3.32 0.00 0.00 3.53
2945 3108 1.279558 TGGCCTGCGTATAAGTTCCAA 59.720 47.619 3.32 0.00 0.00 3.53
2946 3109 1.669265 GGCCTGCGTATAAGTTCCAAC 59.331 52.381 0.00 0.00 0.00 3.77
2947 3110 2.629051 GCCTGCGTATAAGTTCCAACT 58.371 47.619 0.00 0.00 42.04 3.16
2948 3111 2.608090 GCCTGCGTATAAGTTCCAACTC 59.392 50.000 0.00 0.00 38.57 3.01
2949 3112 2.858344 CCTGCGTATAAGTTCCAACTCG 59.142 50.000 0.00 0.00 38.57 4.18
2950 3113 2.264813 TGCGTATAAGTTCCAACTCGC 58.735 47.619 13.48 13.48 44.07 5.03
2951 3114 2.094390 TGCGTATAAGTTCCAACTCGCT 60.094 45.455 18.43 0.00 44.10 4.93
2952 3115 2.928116 GCGTATAAGTTCCAACTCGCTT 59.072 45.455 13.21 0.00 42.00 4.68
2953 3116 3.370061 GCGTATAAGTTCCAACTCGCTTT 59.630 43.478 13.21 0.00 42.00 3.51
2954 3117 4.724036 GCGTATAAGTTCCAACTCGCTTTG 60.724 45.833 13.21 0.00 42.00 2.77
2955 3118 4.387862 CGTATAAGTTCCAACTCGCTTTGT 59.612 41.667 0.00 0.00 38.57 2.83
2956 3119 5.444218 CGTATAAGTTCCAACTCGCTTTGTC 60.444 44.000 0.00 0.00 38.57 3.18
2957 3120 2.622064 AGTTCCAACTCGCTTTGTCT 57.378 45.000 0.00 0.00 32.86 3.41
2958 3121 2.919228 AGTTCCAACTCGCTTTGTCTT 58.081 42.857 0.00 0.00 32.86 3.01
2959 3122 2.614057 AGTTCCAACTCGCTTTGTCTTG 59.386 45.455 0.00 0.00 32.86 3.02
2960 3123 1.593196 TCCAACTCGCTTTGTCTTGG 58.407 50.000 0.00 0.00 33.89 3.61
2961 3124 0.040067 CCAACTCGCTTTGTCTTGGC 60.040 55.000 0.00 0.00 0.00 4.52
2962 3125 0.040067 CAACTCGCTTTGTCTTGGCC 60.040 55.000 0.00 0.00 0.00 5.36
2963 3126 0.465460 AACTCGCTTTGTCTTGGCCA 60.465 50.000 0.00 0.00 0.00 5.36
2964 3127 1.166531 ACTCGCTTTGTCTTGGCCAC 61.167 55.000 3.88 0.00 0.00 5.01
2965 3128 1.856265 CTCGCTTTGTCTTGGCCACC 61.856 60.000 3.88 0.00 0.00 4.61
2966 3129 2.192861 CGCTTTGTCTTGGCCACCA 61.193 57.895 3.88 0.00 0.00 4.17
2967 3130 1.662044 GCTTTGTCTTGGCCACCAG 59.338 57.895 3.88 0.00 33.81 4.00
2968 3131 0.823356 GCTTTGTCTTGGCCACCAGA 60.823 55.000 3.88 3.24 33.81 3.86
2969 3132 1.691196 CTTTGTCTTGGCCACCAGAA 58.309 50.000 3.88 0.00 33.81 3.02
2970 3133 2.242043 CTTTGTCTTGGCCACCAGAAT 58.758 47.619 3.88 0.00 33.81 2.40
2971 3134 1.909700 TTGTCTTGGCCACCAGAATC 58.090 50.000 3.88 0.00 33.81 2.52
2972 3135 0.038166 TGTCTTGGCCACCAGAATCC 59.962 55.000 3.88 0.00 33.81 3.01
2973 3136 0.329596 GTCTTGGCCACCAGAATCCT 59.670 55.000 3.88 0.00 33.81 3.24
2974 3137 1.075601 TCTTGGCCACCAGAATCCTT 58.924 50.000 3.88 0.00 33.81 3.36
2975 3138 1.180029 CTTGGCCACCAGAATCCTTG 58.820 55.000 3.88 0.00 33.81 3.61
2976 3139 0.482446 TTGGCCACCAGAATCCTTGT 59.518 50.000 3.88 0.00 33.81 3.16
2977 3140 0.038166 TGGCCACCAGAATCCTTGTC 59.962 55.000 0.00 0.00 0.00 3.18
2978 3141 0.329596 GGCCACCAGAATCCTTGTCT 59.670 55.000 0.00 0.00 0.00 3.41
2979 3142 1.457346 GCCACCAGAATCCTTGTCTG 58.543 55.000 0.00 0.00 41.87 3.51
2980 3143 1.003580 GCCACCAGAATCCTTGTCTGA 59.996 52.381 3.02 0.00 44.44 3.27
2981 3144 2.553028 GCCACCAGAATCCTTGTCTGAA 60.553 50.000 3.02 0.00 44.44 3.02
2982 3145 3.077359 CCACCAGAATCCTTGTCTGAAC 58.923 50.000 3.02 0.00 44.44 3.18
2983 3146 3.077359 CACCAGAATCCTTGTCTGAACC 58.923 50.000 3.02 0.00 44.44 3.62
2984 3147 2.982488 ACCAGAATCCTTGTCTGAACCT 59.018 45.455 3.02 0.00 44.44 3.50
2985 3148 3.244700 ACCAGAATCCTTGTCTGAACCTG 60.245 47.826 3.02 0.00 44.44 4.00
2986 3149 3.008375 CCAGAATCCTTGTCTGAACCTGA 59.992 47.826 3.02 0.00 44.44 3.86
2987 3150 3.999663 CAGAATCCTTGTCTGAACCTGAC 59.000 47.826 0.00 0.00 44.44 3.51
2988 3151 3.008485 AGAATCCTTGTCTGAACCTGACC 59.992 47.826 0.00 0.00 32.56 4.02
2989 3152 1.801242 TCCTTGTCTGAACCTGACCA 58.199 50.000 0.00 0.00 32.56 4.02
2990 3153 2.123589 TCCTTGTCTGAACCTGACCAA 58.876 47.619 0.00 0.00 32.56 3.67
2991 3154 2.507886 TCCTTGTCTGAACCTGACCAAA 59.492 45.455 0.00 0.00 32.56 3.28
2992 3155 3.053991 TCCTTGTCTGAACCTGACCAAAA 60.054 43.478 0.00 0.00 32.56 2.44
2993 3156 3.699038 CCTTGTCTGAACCTGACCAAAAA 59.301 43.478 0.00 0.00 32.56 1.94
3008 3171 3.154589 AAAAACGGCCCTCTCGATC 57.845 52.632 0.00 0.00 0.00 3.69
3009 3172 0.613777 AAAAACGGCCCTCTCGATCT 59.386 50.000 0.00 0.00 0.00 2.75
3010 3173 0.613777 AAAACGGCCCTCTCGATCTT 59.386 50.000 0.00 0.00 0.00 2.40
3011 3174 0.175989 AAACGGCCCTCTCGATCTTC 59.824 55.000 0.00 0.00 0.00 2.87
3012 3175 0.684805 AACGGCCCTCTCGATCTTCT 60.685 55.000 0.00 0.00 0.00 2.85
3013 3176 1.104577 ACGGCCCTCTCGATCTTCTC 61.105 60.000 0.00 0.00 0.00 2.87
3014 3177 1.103987 CGGCCCTCTCGATCTTCTCA 61.104 60.000 0.00 0.00 0.00 3.27
3015 3178 1.115467 GGCCCTCTCGATCTTCTCAA 58.885 55.000 0.00 0.00 0.00 3.02
3016 3179 1.482593 GGCCCTCTCGATCTTCTCAAA 59.517 52.381 0.00 0.00 0.00 2.69
3017 3180 2.093447 GGCCCTCTCGATCTTCTCAAAA 60.093 50.000 0.00 0.00 0.00 2.44
3018 3181 3.194062 GCCCTCTCGATCTTCTCAAAAG 58.806 50.000 0.00 0.00 0.00 2.27
3019 3182 3.118956 GCCCTCTCGATCTTCTCAAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
3020 3183 4.681744 CCCTCTCGATCTTCTCAAAAGAG 58.318 47.826 0.00 0.00 31.75 2.85
3021 3184 4.441356 CCCTCTCGATCTTCTCAAAAGAGG 60.441 50.000 8.26 8.26 40.85 3.69
3022 3185 4.441356 CCTCTCGATCTTCTCAAAAGAGGG 60.441 50.000 7.48 0.00 39.22 4.30
3023 3186 4.090090 TCTCGATCTTCTCAAAAGAGGGT 58.910 43.478 0.00 0.00 31.75 4.34
3024 3187 5.262009 TCTCGATCTTCTCAAAAGAGGGTA 58.738 41.667 0.00 0.00 31.75 3.69
3025 3188 5.125739 TCTCGATCTTCTCAAAAGAGGGTAC 59.874 44.000 0.00 0.00 31.75 3.34
3026 3189 5.017490 TCGATCTTCTCAAAAGAGGGTACT 58.983 41.667 0.00 0.00 31.75 2.73
3027 3190 6.185511 TCGATCTTCTCAAAAGAGGGTACTA 58.814 40.000 0.00 0.00 31.75 1.82
3028 3191 6.319152 TCGATCTTCTCAAAAGAGGGTACTAG 59.681 42.308 0.00 0.00 31.75 2.57
3029 3192 6.460399 CGATCTTCTCAAAAGAGGGTACTAGG 60.460 46.154 0.00 0.00 31.75 3.02
3030 3193 5.024118 TCTTCTCAAAAGAGGGTACTAGGG 58.976 45.833 0.00 0.00 31.75 3.53
3031 3194 4.415224 TCTCAAAAGAGGGTACTAGGGT 57.585 45.455 0.00 0.00 0.00 4.34
3032 3195 4.759953 TCTCAAAAGAGGGTACTAGGGTT 58.240 43.478 0.00 0.00 0.00 4.11
3033 3196 4.530946 TCTCAAAAGAGGGTACTAGGGTTG 59.469 45.833 0.00 0.00 0.00 3.77
3034 3197 4.237018 TCAAAAGAGGGTACTAGGGTTGT 58.763 43.478 0.00 0.00 0.00 3.32
3035 3198 4.285260 TCAAAAGAGGGTACTAGGGTTGTC 59.715 45.833 0.00 0.00 0.00 3.18
3036 3199 2.546652 AGAGGGTACTAGGGTTGTCC 57.453 55.000 0.00 0.00 0.00 4.02
3051 3214 5.629079 GGTTGTCCCTCAAATGAAGTTAG 57.371 43.478 0.00 0.00 37.81 2.34
3052 3215 5.070685 GGTTGTCCCTCAAATGAAGTTAGT 58.929 41.667 0.00 0.00 37.81 2.24
3053 3216 5.048713 GGTTGTCCCTCAAATGAAGTTAGTG 60.049 44.000 0.00 0.00 37.81 2.74
3054 3217 4.072131 TGTCCCTCAAATGAAGTTAGTGC 58.928 43.478 0.00 0.00 0.00 4.40
3055 3218 4.202461 TGTCCCTCAAATGAAGTTAGTGCT 60.202 41.667 0.00 0.00 0.00 4.40
3056 3219 5.012664 TGTCCCTCAAATGAAGTTAGTGCTA 59.987 40.000 0.00 0.00 0.00 3.49
3057 3220 5.582665 GTCCCTCAAATGAAGTTAGTGCTAG 59.417 44.000 0.00 0.00 0.00 3.42
3058 3221 5.483937 TCCCTCAAATGAAGTTAGTGCTAGA 59.516 40.000 0.00 0.00 0.00 2.43
3059 3222 6.156949 TCCCTCAAATGAAGTTAGTGCTAGAT 59.843 38.462 0.00 0.00 0.00 1.98
3060 3223 7.344612 TCCCTCAAATGAAGTTAGTGCTAGATA 59.655 37.037 0.00 0.00 0.00 1.98
3061 3224 7.439655 CCCTCAAATGAAGTTAGTGCTAGATAC 59.560 40.741 0.00 0.00 0.00 2.24
3062 3225 7.981789 CCTCAAATGAAGTTAGTGCTAGATACA 59.018 37.037 0.00 0.00 0.00 2.29
3063 3226 9.539825 CTCAAATGAAGTTAGTGCTAGATACAT 57.460 33.333 0.00 0.00 0.00 2.29
3064 3227 9.534565 TCAAATGAAGTTAGTGCTAGATACATC 57.465 33.333 0.00 0.00 0.00 3.06
3065 3228 8.768955 CAAATGAAGTTAGTGCTAGATACATCC 58.231 37.037 0.00 0.00 0.00 3.51
3066 3229 7.603180 ATGAAGTTAGTGCTAGATACATCCA 57.397 36.000 0.00 0.00 0.00 3.41
3067 3230 7.603180 TGAAGTTAGTGCTAGATACATCCAT 57.397 36.000 0.00 0.00 0.00 3.41
3068 3231 8.023021 TGAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
3069 3232 8.486210 TGAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
3070 3233 9.982651 GAAGTTAGTGCTAGATACATCCATTTA 57.017 33.333 0.00 0.00 0.00 1.40
3076 3239 9.905713 AGTGCTAGATACATCCATTTAAAAAGA 57.094 29.630 0.00 0.00 0.00 2.52
3089 3252 9.295825 TCCATTTAAAAAGATAAGCTTGAGACA 57.704 29.630 9.86 0.00 36.80 3.41
3090 3253 9.912634 CCATTTAAAAAGATAAGCTTGAGACAA 57.087 29.630 9.86 0.00 36.80 3.18
3092 3255 9.631452 ATTTAAAAAGATAAGCTTGAGACAAGC 57.369 29.630 23.31 23.31 43.31 4.01
3100 3263 3.609103 GCTTGAGACAAGCTTTTTCGA 57.391 42.857 23.42 0.00 40.01 3.71
3101 3264 3.952535 GCTTGAGACAAGCTTTTTCGAA 58.047 40.909 23.42 0.00 40.01 3.71
3102 3265 3.726235 GCTTGAGACAAGCTTTTTCGAAC 59.274 43.478 23.42 0.00 40.01 3.95
3103 3266 3.585748 TGAGACAAGCTTTTTCGAACG 57.414 42.857 0.00 0.00 0.00 3.95
3104 3267 3.191669 TGAGACAAGCTTTTTCGAACGA 58.808 40.909 0.00 0.00 0.00 3.85
3105 3268 3.619483 TGAGACAAGCTTTTTCGAACGAA 59.381 39.130 0.00 5.53 0.00 3.85
3106 3269 4.197107 AGACAAGCTTTTTCGAACGAAG 57.803 40.909 13.50 13.50 35.38 3.79
3107 3270 3.002348 AGACAAGCTTTTTCGAACGAAGG 59.998 43.478 17.46 5.29 35.38 3.46
3108 3271 2.032924 ACAAGCTTTTTCGAACGAAGGG 59.967 45.455 17.46 5.86 35.38 3.95
3109 3272 2.249844 AGCTTTTTCGAACGAAGGGA 57.750 45.000 17.46 0.00 35.38 4.20
3110 3273 2.143925 AGCTTTTTCGAACGAAGGGAG 58.856 47.619 17.46 9.71 35.38 4.30
3111 3274 1.871676 GCTTTTTCGAACGAAGGGAGT 59.128 47.619 17.46 0.00 35.38 3.85
3112 3275 3.062042 GCTTTTTCGAACGAAGGGAGTA 58.938 45.455 17.46 0.00 35.38 2.59
3113 3276 3.683340 GCTTTTTCGAACGAAGGGAGTAT 59.317 43.478 17.46 0.00 35.38 2.12
3114 3277 4.201695 GCTTTTTCGAACGAAGGGAGTATC 60.202 45.833 17.46 1.54 35.38 2.24
3115 3278 4.796038 TTTTCGAACGAAGGGAGTATCT 57.204 40.909 9.46 0.00 35.38 1.98
3116 3279 5.902613 TTTTCGAACGAAGGGAGTATCTA 57.097 39.130 9.46 0.00 35.38 1.98
3117 3280 5.902613 TTTCGAACGAAGGGAGTATCTAA 57.097 39.130 9.46 0.00 35.38 2.10
3118 3281 6.461110 TTTCGAACGAAGGGAGTATCTAAT 57.539 37.500 9.46 0.00 35.38 1.73
3119 3282 6.461110 TTCGAACGAAGGGAGTATCTAATT 57.539 37.500 5.53 0.00 33.73 1.40
3120 3283 7.572523 TTCGAACGAAGGGAGTATCTAATTA 57.427 36.000 5.53 0.00 33.73 1.40
3121 3284 7.572523 TCGAACGAAGGGAGTATCTAATTAA 57.427 36.000 0.00 0.00 33.73 1.40
3122 3285 7.999679 TCGAACGAAGGGAGTATCTAATTAAA 58.000 34.615 0.00 0.00 33.73 1.52
3123 3286 8.133627 TCGAACGAAGGGAGTATCTAATTAAAG 58.866 37.037 0.00 0.00 33.73 1.85
3124 3287 7.919621 CGAACGAAGGGAGTATCTAATTAAAGT 59.080 37.037 0.00 0.00 33.73 2.66
3125 3288 8.943909 AACGAAGGGAGTATCTAATTAAAGTG 57.056 34.615 0.00 0.00 33.73 3.16
3126 3289 8.075761 ACGAAGGGAGTATCTAATTAAAGTGT 57.924 34.615 0.00 0.00 33.73 3.55
3127 3290 7.980099 ACGAAGGGAGTATCTAATTAAAGTGTG 59.020 37.037 0.00 0.00 33.73 3.82
3128 3291 8.195436 CGAAGGGAGTATCTAATTAAAGTGTGA 58.805 37.037 0.00 0.00 33.73 3.58
3129 3292 9.886132 GAAGGGAGTATCTAATTAAAGTGTGAA 57.114 33.333 0.00 0.00 33.73 3.18
3130 3293 9.668497 AAGGGAGTATCTAATTAAAGTGTGAAC 57.332 33.333 0.00 0.00 33.73 3.18
3131 3294 8.265764 AGGGAGTATCTAATTAAAGTGTGAACC 58.734 37.037 0.00 0.00 33.73 3.62
3132 3295 8.044908 GGGAGTATCTAATTAAAGTGTGAACCA 58.955 37.037 0.00 0.00 33.73 3.67
3133 3296 9.099454 GGAGTATCTAATTAAAGTGTGAACCAG 57.901 37.037 0.00 0.00 33.73 4.00
3134 3297 9.871238 GAGTATCTAATTAAAGTGTGAACCAGA 57.129 33.333 0.00 0.00 0.00 3.86
3135 3298 9.877178 AGTATCTAATTAAAGTGTGAACCAGAG 57.123 33.333 0.00 0.00 0.00 3.35
3136 3299 9.654663 GTATCTAATTAAAGTGTGAACCAGAGT 57.345 33.333 0.00 0.00 0.00 3.24
3137 3300 7.962964 TCTAATTAAAGTGTGAACCAGAGTG 57.037 36.000 0.00 0.00 0.00 3.51
3138 3301 7.506114 TCTAATTAAAGTGTGAACCAGAGTGT 58.494 34.615 0.00 0.00 0.00 3.55
3139 3302 7.990886 TCTAATTAAAGTGTGAACCAGAGTGTT 59.009 33.333 0.00 0.00 0.00 3.32
3140 3303 5.811399 TTAAAGTGTGAACCAGAGTGTTG 57.189 39.130 0.00 0.00 0.00 3.33
3141 3304 2.332063 AGTGTGAACCAGAGTGTTGG 57.668 50.000 0.00 0.00 44.09 3.77
3142 3305 0.663153 GTGTGAACCAGAGTGTTGGC 59.337 55.000 0.00 0.00 42.18 4.52
3143 3306 0.813610 TGTGAACCAGAGTGTTGGCG 60.814 55.000 0.00 0.00 42.18 5.69
3144 3307 0.814010 GTGAACCAGAGTGTTGGCGT 60.814 55.000 0.00 0.00 42.18 5.68
3145 3308 0.107410 TGAACCAGAGTGTTGGCGTT 60.107 50.000 0.00 0.00 42.18 4.84
3146 3309 0.307760 GAACCAGAGTGTTGGCGTTG 59.692 55.000 0.00 0.00 42.18 4.10
3147 3310 0.393808 AACCAGAGTGTTGGCGTTGT 60.394 50.000 0.00 0.00 42.18 3.32
3148 3311 0.393808 ACCAGAGTGTTGGCGTTGTT 60.394 50.000 0.00 0.00 42.18 2.83
3149 3312 0.029300 CCAGAGTGTTGGCGTTGTTG 59.971 55.000 0.00 0.00 0.00 3.33
3150 3313 1.013596 CAGAGTGTTGGCGTTGTTGA 58.986 50.000 0.00 0.00 0.00 3.18
3151 3314 1.014352 AGAGTGTTGGCGTTGTTGAC 58.986 50.000 0.00 0.00 0.00 3.18
3152 3315 0.028902 GAGTGTTGGCGTTGTTGACC 59.971 55.000 0.00 0.00 0.00 4.02
3153 3316 0.678366 AGTGTTGGCGTTGTTGACCA 60.678 50.000 0.00 0.00 0.00 4.02
3154 3317 0.524604 GTGTTGGCGTTGTTGACCAC 60.525 55.000 0.00 0.00 31.83 4.16
3155 3318 0.678366 TGTTGGCGTTGTTGACCACT 60.678 50.000 0.00 0.00 31.83 4.00
3156 3319 1.301423 GTTGGCGTTGTTGACCACTA 58.699 50.000 0.00 0.00 31.83 2.74
3157 3320 1.877443 GTTGGCGTTGTTGACCACTAT 59.123 47.619 0.00 0.00 31.83 2.12
3158 3321 2.264005 TGGCGTTGTTGACCACTATT 57.736 45.000 0.00 0.00 0.00 1.73
3159 3322 1.876799 TGGCGTTGTTGACCACTATTG 59.123 47.619 0.00 0.00 0.00 1.90
3160 3323 1.877443 GGCGTTGTTGACCACTATTGT 59.123 47.619 0.00 0.00 0.00 2.71
3161 3324 2.292292 GGCGTTGTTGACCACTATTGTT 59.708 45.455 0.00 0.00 0.00 2.83
3162 3325 3.499157 GGCGTTGTTGACCACTATTGTTA 59.501 43.478 0.00 0.00 0.00 2.41
3163 3326 4.460505 GCGTTGTTGACCACTATTGTTAC 58.539 43.478 0.00 0.00 0.00 2.50
3164 3327 4.694177 CGTTGTTGACCACTATTGTTACG 58.306 43.478 0.00 0.00 0.00 3.18
3165 3328 4.460505 GTTGTTGACCACTATTGTTACGC 58.539 43.478 0.00 0.00 0.00 4.42
3166 3329 3.997762 TGTTGACCACTATTGTTACGCT 58.002 40.909 0.00 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.039074 CTCGTCACAAACCTCGAGCT 60.039 55.000 6.99 0.00 41.98 4.09
84 94 6.550938 TGAGCTGATGGAGAGAAATCTTAA 57.449 37.500 0.00 0.00 0.00 1.85
151 162 3.028850 TGATCCCTAGGTACAGGAAACG 58.971 50.000 8.29 0.00 38.00 3.60
161 172 4.589374 CGAAAAGGAGTATGATCCCTAGGT 59.411 45.833 8.29 0.00 40.53 3.08
287 302 3.488310 GCATATTCGTACAGTAACACGGG 59.512 47.826 0.00 0.00 38.66 5.28
473 494 8.683615 CAGGTACATAAAGTAAAGGGATTTTCC 58.316 37.037 0.00 0.00 33.72 3.13
477 499 7.037153 TCACCAGGTACATAAAGTAAAGGGATT 60.037 37.037 0.00 0.00 33.72 3.01
480 502 6.057321 TCACCAGGTACATAAAGTAAAGGG 57.943 41.667 0.00 0.00 33.72 3.95
484 506 5.933463 CCGTTTCACCAGGTACATAAAGTAA 59.067 40.000 0.00 0.00 33.72 2.24
507 529 3.425162 AATATCCTTCTGCGATTCCCC 57.575 47.619 0.00 0.00 0.00 4.81
515 537 7.793927 AAAAGCAGTACTAATATCCTTCTGC 57.206 36.000 0.00 0.00 44.44 4.26
534 556 5.739161 CAGAACATATTGCGAGGTAAAAAGC 59.261 40.000 0.00 0.00 0.00 3.51
565 587 5.399013 GGTTGATTTGGGTTAGAAACGATG 58.601 41.667 0.00 0.00 0.00 3.84
581 603 4.739793 TCAAATTCTGGAGTGGGTTGATT 58.260 39.130 0.00 0.00 0.00 2.57
593 615 5.840243 TTCCATAGCACATCAAATTCTGG 57.160 39.130 0.00 0.00 0.00 3.86
786 813 9.216117 TGAGCATCTAATCATCAACAAGATATG 57.784 33.333 0.00 0.00 32.67 1.78
879 906 2.782925 TCTAAGCAATTAGGATGGGGCA 59.217 45.455 0.00 0.00 0.00 5.36
1038 1105 1.205893 GAGAAAGTGATCTCCAGGCGT 59.794 52.381 0.00 0.00 39.98 5.68
1391 1458 0.035056 ATTCAGGAAGGCAACCTCGG 60.035 55.000 0.00 0.00 35.35 4.63
1415 1482 2.104792 CCAGACTTGAGTCCACCAAAGA 59.895 50.000 7.50 0.00 45.85 2.52
1573 1640 6.408320 CCATCATCAGAGGTCTTGAAGAAGAT 60.408 42.308 0.00 0.00 40.40 2.40
1592 1659 2.519771 ACAAGATGTGTGGCCATCAT 57.480 45.000 21.06 21.06 43.00 2.45
1860 1927 2.936919 AGATGGTCACAGCAACAGAA 57.063 45.000 0.00 0.00 34.87 3.02
2018 2085 0.544357 AGATCTTGGTGACCCGGTGA 60.544 55.000 0.00 0.00 0.00 4.02
2069 2136 2.646930 CATCCATCTTGCAGCCAGTAA 58.353 47.619 0.00 0.00 0.00 2.24
2070 2137 1.748244 GCATCCATCTTGCAGCCAGTA 60.748 52.381 0.00 0.00 39.90 2.74
2072 2139 0.752009 AGCATCCATCTTGCAGCCAG 60.752 55.000 0.00 0.00 42.62 4.85
2073 2140 0.323999 AAGCATCCATCTTGCAGCCA 60.324 50.000 0.00 0.00 42.62 4.75
2224 2295 2.327325 ACTAGGACAGGAGCAGGAAA 57.673 50.000 0.00 0.00 0.00 3.13
2232 2303 5.446860 CCATAACAGAGTACTAGGACAGGA 58.553 45.833 8.10 0.00 0.00 3.86
2233 2304 4.585162 CCCATAACAGAGTACTAGGACAGG 59.415 50.000 8.10 0.00 0.00 4.00
2234 2305 4.038162 GCCCATAACAGAGTACTAGGACAG 59.962 50.000 8.10 0.00 0.00 3.51
2235 2306 3.958798 GCCCATAACAGAGTACTAGGACA 59.041 47.826 8.10 0.00 0.00 4.02
2236 2307 3.958798 TGCCCATAACAGAGTACTAGGAC 59.041 47.826 0.00 0.00 0.00 3.85
2237 2308 4.259933 TGCCCATAACAGAGTACTAGGA 57.740 45.455 0.00 0.00 0.00 2.94
2242 2313 3.933332 GTCACTTGCCCATAACAGAGTAC 59.067 47.826 0.00 0.00 0.00 2.73
2247 2319 1.464608 CACGTCACTTGCCCATAACAG 59.535 52.381 0.00 0.00 0.00 3.16
2256 2328 2.774439 ACCATTTTCACGTCACTTGC 57.226 45.000 0.00 0.00 0.00 4.01
2268 2340 3.068873 TGGCAGAAAACGCTAACCATTTT 59.931 39.130 0.00 0.00 0.00 1.82
2318 2391 2.953648 TCATAAACCATGCAGCCAGATG 59.046 45.455 0.00 0.00 34.35 2.90
2346 2419 7.123247 ACATTTGCTCAATACAAGGCTTATTCT 59.877 33.333 0.00 0.00 0.00 2.40
2506 2579 9.827198 ACATCTCCAAGAGATAGATTCTTATCT 57.173 33.333 6.78 0.00 46.25 1.98
2587 2660 1.208776 GGCCTCCACGTATAAGGTGTT 59.791 52.381 0.00 0.00 32.52 3.32
2598 2679 4.215742 TATTCGGCGGCCTCCACG 62.216 66.667 18.34 5.74 0.00 4.94
2608 2689 1.662122 CTACAAACGGGTGTATTCGGC 59.338 52.381 1.47 0.00 33.59 5.54
2644 2744 3.313526 CAGCATTTCTACACTGTATGGGC 59.686 47.826 0.00 0.00 0.00 5.36
2645 2745 3.879295 CCAGCATTTCTACACTGTATGGG 59.121 47.826 0.00 0.00 0.00 4.00
2646 2746 4.769688 TCCAGCATTTCTACACTGTATGG 58.230 43.478 0.00 0.00 0.00 2.74
2647 2747 7.170489 CACTATCCAGCATTTCTACACTGTATG 59.830 40.741 0.00 0.00 0.00 2.39
2648 2748 7.212976 CACTATCCAGCATTTCTACACTGTAT 58.787 38.462 0.00 0.00 0.00 2.29
2649 2749 6.406961 CCACTATCCAGCATTTCTACACTGTA 60.407 42.308 0.00 0.00 0.00 2.74
2650 2750 5.423015 CACTATCCAGCATTTCTACACTGT 58.577 41.667 0.00 0.00 0.00 3.55
2651 2751 4.813161 CCACTATCCAGCATTTCTACACTG 59.187 45.833 0.00 0.00 0.00 3.66
2652 2752 4.716784 TCCACTATCCAGCATTTCTACACT 59.283 41.667 0.00 0.00 0.00 3.55
2653 2753 5.023533 TCCACTATCCAGCATTTCTACAC 57.976 43.478 0.00 0.00 0.00 2.90
2654 2754 5.366477 TCATCCACTATCCAGCATTTCTACA 59.634 40.000 0.00 0.00 0.00 2.74
2655 2755 5.858381 TCATCCACTATCCAGCATTTCTAC 58.142 41.667 0.00 0.00 0.00 2.59
2658 2758 5.068636 ACATCATCCACTATCCAGCATTTC 58.931 41.667 0.00 0.00 0.00 2.17
2661 2761 5.089434 TCTACATCATCCACTATCCAGCAT 58.911 41.667 0.00 0.00 0.00 3.79
2671 2771 6.949352 ATCCAACATTTCTACATCATCCAC 57.051 37.500 0.00 0.00 0.00 4.02
2675 2775 7.805163 TCCACTATCCAACATTTCTACATCAT 58.195 34.615 0.00 0.00 0.00 2.45
2681 2781 7.072328 TCCATCATCCACTATCCAACATTTCTA 59.928 37.037 0.00 0.00 0.00 2.10
2684 2784 6.017211 TCCATCATCCACTATCCAACATTT 57.983 37.500 0.00 0.00 0.00 2.32
2685 2785 5.370584 TCTCCATCATCCACTATCCAACATT 59.629 40.000 0.00 0.00 0.00 2.71
2686 2786 4.909695 TCTCCATCATCCACTATCCAACAT 59.090 41.667 0.00 0.00 0.00 2.71
2687 2787 4.297768 TCTCCATCATCCACTATCCAACA 58.702 43.478 0.00 0.00 0.00 3.33
2688 2788 4.590647 TCTCTCCATCATCCACTATCCAAC 59.409 45.833 0.00 0.00 0.00 3.77
2689 2789 4.590647 GTCTCTCCATCATCCACTATCCAA 59.409 45.833 0.00 0.00 0.00 3.53
2690 2790 4.155709 GTCTCTCCATCATCCACTATCCA 58.844 47.826 0.00 0.00 0.00 3.41
2691 2791 4.155709 TGTCTCTCCATCATCCACTATCC 58.844 47.826 0.00 0.00 0.00 2.59
2692 2792 4.832266 ACTGTCTCTCCATCATCCACTATC 59.168 45.833 0.00 0.00 0.00 2.08
2693 2793 4.813809 ACTGTCTCTCCATCATCCACTAT 58.186 43.478 0.00 0.00 0.00 2.12
2694 2794 4.256983 ACTGTCTCTCCATCATCCACTA 57.743 45.455 0.00 0.00 0.00 2.74
2695 2795 3.113191 ACTGTCTCTCCATCATCCACT 57.887 47.619 0.00 0.00 0.00 4.00
2696 2796 3.736433 CGAACTGTCTCTCCATCATCCAC 60.736 52.174 0.00 0.00 0.00 4.02
2697 2797 2.428530 CGAACTGTCTCTCCATCATCCA 59.571 50.000 0.00 0.00 0.00 3.41
2698 2798 2.690497 TCGAACTGTCTCTCCATCATCC 59.310 50.000 0.00 0.00 0.00 3.51
2699 2799 3.129462 TGTCGAACTGTCTCTCCATCATC 59.871 47.826 0.00 0.00 0.00 2.92
2700 2800 3.092301 TGTCGAACTGTCTCTCCATCAT 58.908 45.455 0.00 0.00 0.00 2.45
2701 2801 2.514803 TGTCGAACTGTCTCTCCATCA 58.485 47.619 0.00 0.00 0.00 3.07
2702 2802 3.119316 ACATGTCGAACTGTCTCTCCATC 60.119 47.826 0.00 0.00 0.00 3.51
2703 2803 2.828520 ACATGTCGAACTGTCTCTCCAT 59.171 45.455 0.00 0.00 0.00 3.41
2704 2804 2.229062 GACATGTCGAACTGTCTCTCCA 59.771 50.000 10.69 0.00 38.94 3.86
2705 2805 2.869897 GACATGTCGAACTGTCTCTCC 58.130 52.381 10.69 0.00 38.94 3.71
2752 2852 2.887568 CGGTGCGTGATGCTCTCC 60.888 66.667 0.00 0.00 46.63 3.71
2819 2982 5.182570 CACTGGCATGGATCCTTTATATGTG 59.817 44.000 14.23 9.99 0.00 3.21
2820 2983 5.163055 ACACTGGCATGGATCCTTTATATGT 60.163 40.000 14.23 6.74 0.00 2.29
2828 2991 3.559069 CAATAACACTGGCATGGATCCT 58.441 45.455 14.23 0.00 0.00 3.24
2829 2992 2.035066 GCAATAACACTGGCATGGATCC 59.965 50.000 4.20 4.20 0.00 3.36
2910 3073 3.679639 GCAGGCCAAAAATACTTGATGGG 60.680 47.826 5.01 0.00 0.00 4.00
2920 3083 4.142249 GGAACTTATACGCAGGCCAAAAAT 60.142 41.667 5.01 0.00 0.00 1.82
2928 3091 2.858344 CGAGTTGGAACTTATACGCAGG 59.142 50.000 0.00 0.00 39.88 4.85
2934 3097 5.790593 AGACAAAGCGAGTTGGAACTTATA 58.209 37.500 3.90 0.00 39.88 0.98
2935 3098 4.642429 AGACAAAGCGAGTTGGAACTTAT 58.358 39.130 3.90 0.00 39.88 1.73
2936 3099 4.067972 AGACAAAGCGAGTTGGAACTTA 57.932 40.909 3.90 0.00 39.88 2.24
2937 3100 2.919228 AGACAAAGCGAGTTGGAACTT 58.081 42.857 3.90 0.00 39.88 2.66
2938 3101 2.614057 CAAGACAAAGCGAGTTGGAACT 59.386 45.455 3.90 0.00 43.16 3.01
2939 3102 2.287009 CCAAGACAAAGCGAGTTGGAAC 60.287 50.000 0.00 0.00 40.18 3.62
2940 3103 1.946768 CCAAGACAAAGCGAGTTGGAA 59.053 47.619 0.00 0.00 40.18 3.53
2941 3104 1.593196 CCAAGACAAAGCGAGTTGGA 58.407 50.000 0.00 0.00 40.18 3.53
2942 3105 0.040067 GCCAAGACAAAGCGAGTTGG 60.040 55.000 3.90 0.00 40.63 3.77
2943 3106 0.040067 GGCCAAGACAAAGCGAGTTG 60.040 55.000 0.00 0.00 34.52 3.16
2944 3107 0.465460 TGGCCAAGACAAAGCGAGTT 60.465 50.000 0.61 0.00 0.00 3.01
2945 3108 1.148273 TGGCCAAGACAAAGCGAGT 59.852 52.632 0.61 0.00 0.00 4.18
2946 3109 1.576421 GTGGCCAAGACAAAGCGAG 59.424 57.895 7.24 0.00 0.00 5.03
2947 3110 1.896660 GGTGGCCAAGACAAAGCGA 60.897 57.895 7.24 0.00 0.00 4.93
2948 3111 2.133742 CTGGTGGCCAAGACAAAGCG 62.134 60.000 7.24 0.00 30.80 4.68
2949 3112 0.823356 TCTGGTGGCCAAGACAAAGC 60.823 55.000 7.24 0.00 30.80 3.51
2950 3113 1.691196 TTCTGGTGGCCAAGACAAAG 58.309 50.000 7.24 0.00 30.80 2.77
2951 3114 2.238521 GATTCTGGTGGCCAAGACAAA 58.761 47.619 7.24 5.36 30.80 2.83
2952 3115 1.547675 GGATTCTGGTGGCCAAGACAA 60.548 52.381 7.24 0.00 30.80 3.18
2953 3116 0.038166 GGATTCTGGTGGCCAAGACA 59.962 55.000 7.24 6.42 30.80 3.41
2954 3117 0.329596 AGGATTCTGGTGGCCAAGAC 59.670 55.000 7.24 0.70 30.80 3.01
2955 3118 1.075601 AAGGATTCTGGTGGCCAAGA 58.924 50.000 7.24 4.60 30.80 3.02
2956 3119 1.180029 CAAGGATTCTGGTGGCCAAG 58.820 55.000 7.24 1.33 30.80 3.61
2957 3120 0.482446 ACAAGGATTCTGGTGGCCAA 59.518 50.000 7.24 0.00 30.80 4.52
2958 3121 0.038166 GACAAGGATTCTGGTGGCCA 59.962 55.000 0.00 0.00 0.00 5.36
2959 3122 0.329596 AGACAAGGATTCTGGTGGCC 59.670 55.000 0.00 0.00 0.00 5.36
2960 3123 1.003580 TCAGACAAGGATTCTGGTGGC 59.996 52.381 0.00 0.00 40.87 5.01
2961 3124 3.077359 GTTCAGACAAGGATTCTGGTGG 58.923 50.000 0.00 0.00 40.87 4.61
2962 3125 3.077359 GGTTCAGACAAGGATTCTGGTG 58.923 50.000 0.00 0.00 40.87 4.17
2963 3126 2.982488 AGGTTCAGACAAGGATTCTGGT 59.018 45.455 0.00 0.00 40.87 4.00
2964 3127 3.008375 TCAGGTTCAGACAAGGATTCTGG 59.992 47.826 0.00 0.00 40.87 3.86
2965 3128 3.999663 GTCAGGTTCAGACAAGGATTCTG 59.000 47.826 0.00 0.00 41.72 3.02
2966 3129 3.008485 GGTCAGGTTCAGACAAGGATTCT 59.992 47.826 0.00 0.00 37.74 2.40
2967 3130 3.244561 TGGTCAGGTTCAGACAAGGATTC 60.245 47.826 0.00 0.00 37.74 2.52
2968 3131 2.711009 TGGTCAGGTTCAGACAAGGATT 59.289 45.455 0.00 0.00 37.74 3.01
2969 3132 2.338809 TGGTCAGGTTCAGACAAGGAT 58.661 47.619 0.00 0.00 37.74 3.24
2970 3133 1.801242 TGGTCAGGTTCAGACAAGGA 58.199 50.000 0.00 0.00 37.74 3.36
2971 3134 2.638480 TTGGTCAGGTTCAGACAAGG 57.362 50.000 0.00 0.00 37.74 3.61
2972 3135 4.981806 TTTTTGGTCAGGTTCAGACAAG 57.018 40.909 0.00 0.00 37.74 3.16
2990 3153 0.613777 AGATCGAGAGGGCCGTTTTT 59.386 50.000 0.00 0.00 0.00 1.94
2991 3154 0.613777 AAGATCGAGAGGGCCGTTTT 59.386 50.000 0.00 0.00 0.00 2.43
2992 3155 0.175989 GAAGATCGAGAGGGCCGTTT 59.824 55.000 0.00 0.00 0.00 3.60
2993 3156 0.684805 AGAAGATCGAGAGGGCCGTT 60.685 55.000 0.00 0.00 0.00 4.44
2994 3157 1.076632 AGAAGATCGAGAGGGCCGT 60.077 57.895 0.00 0.00 0.00 5.68
2995 3158 1.103987 TGAGAAGATCGAGAGGGCCG 61.104 60.000 0.00 0.00 0.00 6.13
2996 3159 1.115467 TTGAGAAGATCGAGAGGGCC 58.885 55.000 0.00 0.00 0.00 5.80
2997 3160 2.969628 TTTGAGAAGATCGAGAGGGC 57.030 50.000 0.00 0.00 0.00 5.19
2998 3161 4.727507 TCTTTTGAGAAGATCGAGAGGG 57.272 45.455 0.00 0.00 0.00 4.30
3011 3174 4.286291 ACAACCCTAGTACCCTCTTTTGAG 59.714 45.833 0.00 0.00 45.83 3.02
3012 3175 4.237018 ACAACCCTAGTACCCTCTTTTGA 58.763 43.478 0.00 0.00 0.00 2.69
3013 3176 4.565028 GGACAACCCTAGTACCCTCTTTTG 60.565 50.000 0.00 0.00 0.00 2.44
3014 3177 3.586174 GGACAACCCTAGTACCCTCTTTT 59.414 47.826 0.00 0.00 0.00 2.27
3015 3178 3.179685 GGACAACCCTAGTACCCTCTTT 58.820 50.000 0.00 0.00 0.00 2.52
3016 3179 2.830293 GGACAACCCTAGTACCCTCTT 58.170 52.381 0.00 0.00 0.00 2.85
3017 3180 2.546652 GGACAACCCTAGTACCCTCT 57.453 55.000 0.00 0.00 0.00 3.69
3029 3192 5.048713 CACTAACTTCATTTGAGGGACAACC 60.049 44.000 0.00 0.00 38.29 3.77
3030 3193 5.562890 GCACTAACTTCATTTGAGGGACAAC 60.563 44.000 0.00 0.00 38.29 3.32
3031 3194 4.518970 GCACTAACTTCATTTGAGGGACAA 59.481 41.667 0.00 0.00 36.65 3.18
3032 3195 4.072131 GCACTAACTTCATTTGAGGGACA 58.928 43.478 0.00 0.00 0.00 4.02
3033 3196 4.327680 AGCACTAACTTCATTTGAGGGAC 58.672 43.478 0.00 0.00 0.00 4.46
3034 3197 4.640771 AGCACTAACTTCATTTGAGGGA 57.359 40.909 0.00 0.00 0.00 4.20
3035 3198 5.734720 TCTAGCACTAACTTCATTTGAGGG 58.265 41.667 0.00 0.00 0.00 4.30
3036 3199 7.981789 TGTATCTAGCACTAACTTCATTTGAGG 59.018 37.037 0.00 0.00 0.00 3.86
3037 3200 8.932945 TGTATCTAGCACTAACTTCATTTGAG 57.067 34.615 0.00 0.00 0.00 3.02
3038 3201 9.534565 GATGTATCTAGCACTAACTTCATTTGA 57.465 33.333 0.00 0.00 0.00 2.69
3039 3202 8.768955 GGATGTATCTAGCACTAACTTCATTTG 58.231 37.037 0.00 0.00 0.00 2.32
3040 3203 8.486210 TGGATGTATCTAGCACTAACTTCATTT 58.514 33.333 0.00 0.00 0.00 2.32
3041 3204 8.023021 TGGATGTATCTAGCACTAACTTCATT 57.977 34.615 0.00 0.00 0.00 2.57
3042 3205 7.603180 TGGATGTATCTAGCACTAACTTCAT 57.397 36.000 0.00 0.00 0.00 2.57
3043 3206 7.603180 ATGGATGTATCTAGCACTAACTTCA 57.397 36.000 0.00 0.00 0.00 3.02
3044 3207 8.894768 AAATGGATGTATCTAGCACTAACTTC 57.105 34.615 0.00 0.00 0.00 3.01
3050 3213 9.905713 TCTTTTTAAATGGATGTATCTAGCACT 57.094 29.630 0.00 0.00 0.00 4.40
3063 3226 9.295825 TGTCTCAAGCTTATCTTTTTAAATGGA 57.704 29.630 0.00 0.00 31.27 3.41
3064 3227 9.912634 TTGTCTCAAGCTTATCTTTTTAAATGG 57.087 29.630 0.00 0.00 31.27 3.16
3066 3229 9.631452 GCTTGTCTCAAGCTTATCTTTTTAAAT 57.369 29.630 22.06 0.00 40.01 1.40
3080 3243 3.609103 TCGAAAAAGCTTGTCTCAAGC 57.391 42.857 21.90 21.90 43.31 4.01
3081 3244 3.962481 CGTTCGAAAAAGCTTGTCTCAAG 59.038 43.478 0.00 5.28 0.00 3.02
3082 3245 3.619483 TCGTTCGAAAAAGCTTGTCTCAA 59.381 39.130 0.00 0.00 0.00 3.02
3083 3246 3.191669 TCGTTCGAAAAAGCTTGTCTCA 58.808 40.909 0.00 0.00 0.00 3.27
3084 3247 3.854286 TCGTTCGAAAAAGCTTGTCTC 57.146 42.857 0.00 0.00 0.00 3.36
3085 3248 3.002348 CCTTCGTTCGAAAAAGCTTGTCT 59.998 43.478 0.00 0.00 0.00 3.41
3086 3249 3.289076 CCTTCGTTCGAAAAAGCTTGTC 58.711 45.455 0.00 0.00 0.00 3.18
3087 3250 2.032924 CCCTTCGTTCGAAAAAGCTTGT 59.967 45.455 0.00 0.00 0.00 3.16
3088 3251 2.289547 TCCCTTCGTTCGAAAAAGCTTG 59.710 45.455 0.00 6.75 0.00 4.01
3089 3252 2.548480 CTCCCTTCGTTCGAAAAAGCTT 59.452 45.455 13.50 0.00 0.00 3.74
3090 3253 2.143925 CTCCCTTCGTTCGAAAAAGCT 58.856 47.619 13.50 0.00 0.00 3.74
3091 3254 1.871676 ACTCCCTTCGTTCGAAAAAGC 59.128 47.619 13.50 0.00 0.00 3.51
3092 3255 5.169295 AGATACTCCCTTCGTTCGAAAAAG 58.831 41.667 0.00 6.99 0.00 2.27
3093 3256 5.143376 AGATACTCCCTTCGTTCGAAAAA 57.857 39.130 0.00 0.00 0.00 1.94
3094 3257 4.796038 AGATACTCCCTTCGTTCGAAAA 57.204 40.909 0.00 0.00 0.00 2.29
3095 3258 5.902613 TTAGATACTCCCTTCGTTCGAAA 57.097 39.130 0.00 0.00 0.00 3.46
3096 3259 6.461110 AATTAGATACTCCCTTCGTTCGAA 57.539 37.500 7.40 7.40 0.00 3.71
3097 3260 7.572523 TTAATTAGATACTCCCTTCGTTCGA 57.427 36.000 0.00 0.00 0.00 3.71
3098 3261 7.919621 ACTTTAATTAGATACTCCCTTCGTTCG 59.080 37.037 0.00 0.00 0.00 3.95
3099 3262 9.032420 CACTTTAATTAGATACTCCCTTCGTTC 57.968 37.037 0.00 0.00 0.00 3.95
3100 3263 8.537858 ACACTTTAATTAGATACTCCCTTCGTT 58.462 33.333 0.00 0.00 0.00 3.85
3101 3264 7.980099 CACACTTTAATTAGATACTCCCTTCGT 59.020 37.037 0.00 0.00 0.00 3.85
3102 3265 8.195436 TCACACTTTAATTAGATACTCCCTTCG 58.805 37.037 0.00 0.00 0.00 3.79
3103 3266 9.886132 TTCACACTTTAATTAGATACTCCCTTC 57.114 33.333 0.00 0.00 0.00 3.46
3104 3267 9.668497 GTTCACACTTTAATTAGATACTCCCTT 57.332 33.333 0.00 0.00 0.00 3.95
3105 3268 8.265764 GGTTCACACTTTAATTAGATACTCCCT 58.734 37.037 0.00 0.00 0.00 4.20
3106 3269 8.044908 TGGTTCACACTTTAATTAGATACTCCC 58.955 37.037 0.00 0.00 0.00 4.30
3107 3270 9.099454 CTGGTTCACACTTTAATTAGATACTCC 57.901 37.037 0.00 0.00 0.00 3.85
3108 3271 9.871238 TCTGGTTCACACTTTAATTAGATACTC 57.129 33.333 0.00 0.00 0.00 2.59
3109 3272 9.877178 CTCTGGTTCACACTTTAATTAGATACT 57.123 33.333 0.00 0.00 0.00 2.12
3110 3273 9.654663 ACTCTGGTTCACACTTTAATTAGATAC 57.345 33.333 0.00 0.00 0.00 2.24
3111 3274 9.653287 CACTCTGGTTCACACTTTAATTAGATA 57.347 33.333 0.00 0.00 0.00 1.98
3112 3275 8.157476 ACACTCTGGTTCACACTTTAATTAGAT 58.843 33.333 0.00 0.00 0.00 1.98
3113 3276 7.506114 ACACTCTGGTTCACACTTTAATTAGA 58.494 34.615 0.00 0.00 0.00 2.10
3114 3277 7.730364 ACACTCTGGTTCACACTTTAATTAG 57.270 36.000 0.00 0.00 0.00 1.73
3115 3278 7.012894 CCAACACTCTGGTTCACACTTTAATTA 59.987 37.037 0.00 0.00 0.00 1.40
3116 3279 6.183360 CCAACACTCTGGTTCACACTTTAATT 60.183 38.462 0.00 0.00 0.00 1.40
3117 3280 5.299279 CCAACACTCTGGTTCACACTTTAAT 59.701 40.000 0.00 0.00 0.00 1.40
3118 3281 4.638421 CCAACACTCTGGTTCACACTTTAA 59.362 41.667 0.00 0.00 0.00 1.52
3119 3282 4.196193 CCAACACTCTGGTTCACACTTTA 58.804 43.478 0.00 0.00 0.00 1.85
3120 3283 3.016736 CCAACACTCTGGTTCACACTTT 58.983 45.455 0.00 0.00 0.00 2.66
3121 3284 2.643551 CCAACACTCTGGTTCACACTT 58.356 47.619 0.00 0.00 0.00 3.16
3122 3285 1.747206 GCCAACACTCTGGTTCACACT 60.747 52.381 0.00 0.00 38.86 3.55
3123 3286 0.663153 GCCAACACTCTGGTTCACAC 59.337 55.000 0.00 0.00 38.86 3.82
3124 3287 0.813610 CGCCAACACTCTGGTTCACA 60.814 55.000 0.00 0.00 38.86 3.58
3125 3288 0.814010 ACGCCAACACTCTGGTTCAC 60.814 55.000 0.00 0.00 38.86 3.18
3126 3289 0.107410 AACGCCAACACTCTGGTTCA 60.107 50.000 0.00 0.00 38.86 3.18
3127 3290 0.307760 CAACGCCAACACTCTGGTTC 59.692 55.000 0.00 0.00 38.86 3.62
3128 3291 0.393808 ACAACGCCAACACTCTGGTT 60.394 50.000 0.00 0.00 38.86 3.67
3129 3292 0.393808 AACAACGCCAACACTCTGGT 60.394 50.000 0.00 0.00 38.86 4.00
3130 3293 0.029300 CAACAACGCCAACACTCTGG 59.971 55.000 0.00 0.00 39.71 3.86
3131 3294 1.013596 TCAACAACGCCAACACTCTG 58.986 50.000 0.00 0.00 0.00 3.35
3132 3295 1.014352 GTCAACAACGCCAACACTCT 58.986 50.000 0.00 0.00 0.00 3.24
3133 3296 0.028902 GGTCAACAACGCCAACACTC 59.971 55.000 0.00 0.00 0.00 3.51
3134 3297 0.678366 TGGTCAACAACGCCAACACT 60.678 50.000 0.00 0.00 0.00 3.55
3135 3298 0.524604 GTGGTCAACAACGCCAACAC 60.525 55.000 0.00 0.00 33.66 3.32
3136 3299 0.678366 AGTGGTCAACAACGCCAACA 60.678 50.000 0.00 0.00 33.66 3.33
3137 3300 1.301423 TAGTGGTCAACAACGCCAAC 58.699 50.000 0.00 0.00 33.66 3.77
3138 3301 2.264005 ATAGTGGTCAACAACGCCAA 57.736 45.000 0.00 0.00 33.66 4.52
3139 3302 1.876799 CAATAGTGGTCAACAACGCCA 59.123 47.619 0.00 0.00 0.00 5.69
3140 3303 1.877443 ACAATAGTGGTCAACAACGCC 59.123 47.619 0.00 0.00 0.00 5.68
3141 3304 3.619233 AACAATAGTGGTCAACAACGC 57.381 42.857 0.00 0.00 0.00 4.84
3142 3305 4.694177 CGTAACAATAGTGGTCAACAACG 58.306 43.478 0.00 0.00 0.00 4.10
3143 3306 4.212636 AGCGTAACAATAGTGGTCAACAAC 59.787 41.667 0.00 0.00 0.00 3.32
3144 3307 4.382291 AGCGTAACAATAGTGGTCAACAA 58.618 39.130 0.00 0.00 0.00 2.83
3145 3308 3.997762 AGCGTAACAATAGTGGTCAACA 58.002 40.909 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.