Multiple sequence alignment - TraesCS6D01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G202300 chr6D 100.000 3208 0 0 1 3208 285183526 285186733 0.000000e+00 5925.0
1 TraesCS6D01G202300 chr6D 100.000 209 0 0 3489 3697 285187014 285187222 1.610000e-103 387.0
2 TraesCS6D01G202300 chr6D 91.765 85 7 0 3489 3573 369706873 369706957 6.490000e-23 119.0
3 TraesCS6D01G202300 chr6A 93.956 1787 51 19 398 2135 405663951 405665729 0.000000e+00 2649.0
4 TraesCS6D01G202300 chr6A 94.315 774 30 7 2262 3023 405666153 405666924 0.000000e+00 1173.0
5 TraesCS6D01G202300 chr6A 96.452 310 9 2 2 309 405663615 405663924 9.160000e-141 510.0
6 TraesCS6D01G202300 chr6A 98.519 135 1 1 2127 2261 405665991 405666124 1.720000e-58 237.0
7 TraesCS6D01G202300 chr6B 92.022 1780 65 26 395 2107 446053858 446055627 0.000000e+00 2429.0
8 TraesCS6D01G202300 chr6B 92.269 983 37 14 2194 3138 446056090 446057071 0.000000e+00 1358.0
9 TraesCS6D01G202300 chr6B 96.970 165 5 0 2 166 446053496 446053660 1.010000e-70 278.0
10 TraesCS6D01G202300 chr6B 94.444 162 6 1 151 309 446053677 446053838 2.850000e-61 246.0
11 TraesCS6D01G202300 chr4B 95.604 91 4 0 308 398 104746518 104746608 2.980000e-31 147.0
12 TraesCS6D01G202300 chr2D 92.308 91 5 2 308 397 484048737 484048826 1.080000e-25 128.0
13 TraesCS6D01G202300 chr3A 96.491 57 2 0 308 364 83952829 83952773 1.090000e-15 95.3
14 TraesCS6D01G202300 chr3A 92.727 55 2 1 308 360 689506795 689506741 1.100000e-10 78.7
15 TraesCS6D01G202300 chr1D 97.561 41 1 0 2129 2169 416268628 416268668 1.840000e-08 71.3
16 TraesCS6D01G202300 chr5D 100.000 33 0 0 3665 3697 421093861 421093893 1.110000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G202300 chr6D 285183526 285187222 3696 False 3156.00 5925 100.00000 1 3697 2 chr6D.!!$F2 3696
1 TraesCS6D01G202300 chr6A 405663615 405666924 3309 False 1142.25 2649 95.81050 2 3023 4 chr6A.!!$F1 3021
2 TraesCS6D01G202300 chr6B 446053496 446057071 3575 False 1077.75 2429 93.92625 2 3138 4 chr6B.!!$F1 3136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 426 0.036858 GTCTCTCAGACCAAGTGGCC 60.037 60.0 0.00 0.00 39.28 5.36 F
535 580 0.304705 GAACATACTGCGCAATCGGG 59.695 55.0 13.05 0.79 35.95 5.14 F
926 989 0.460987 CGAGCCGATTTGCTTCTCCT 60.461 55.0 0.00 0.00 42.95 3.69 F
2318 2845 0.881118 ATGTTCCCATGTTGCGTCAC 59.119 50.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1918 0.109597 GCCAACACAATCAGAAGGCG 60.110 55.000 0.00 0.00 0.00 5.52 R
2428 2968 1.676529 CATTCATCCAAGCTGCAGGAG 59.323 52.381 17.12 10.48 37.34 3.69 R
2459 2999 2.955660 GGTGTCAACCTCCATTGAACAA 59.044 45.455 0.00 0.00 43.84 2.83 R
3161 3714 0.107703 TAGCTCCATTGCCTGTTCCG 60.108 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.356433 CAACATGCTGTACAATTTATTTCATGA 57.644 29.630 0.00 0.00 34.56 3.07
145 146 5.634118 TCATGATCAAAAGAGGAAAGTGGT 58.366 37.500 0.00 0.00 0.00 4.16
232 265 2.287909 GCAGCTTATCTCGGAGTAGGTG 60.288 54.545 21.06 21.06 37.39 4.00
333 369 4.877378 TTTTGAAAGATCCAGCATTGCT 57.123 36.364 5.03 5.03 40.77 3.91
342 378 3.762293 AGCATTGCTGGCGTTCAA 58.238 50.000 11.09 0.00 37.57 2.69
343 379 2.269978 AGCATTGCTGGCGTTCAAT 58.730 47.368 11.09 0.00 37.57 2.57
344 380 0.604578 AGCATTGCTGGCGTTCAATT 59.395 45.000 11.09 0.00 37.57 2.32
345 381 0.717224 GCATTGCTGGCGTTCAATTG 59.283 50.000 0.16 0.00 31.15 2.32
346 382 1.669502 GCATTGCTGGCGTTCAATTGA 60.670 47.619 3.38 3.38 31.15 2.57
347 383 2.883574 CATTGCTGGCGTTCAATTGAT 58.116 42.857 9.40 0.00 31.15 2.57
348 384 3.255725 CATTGCTGGCGTTCAATTGATT 58.744 40.909 9.40 0.00 31.15 2.57
349 385 3.383620 TTGCTGGCGTTCAATTGATTT 57.616 38.095 9.40 0.00 0.00 2.17
350 386 4.511617 TTGCTGGCGTTCAATTGATTTA 57.488 36.364 9.40 0.00 0.00 1.40
351 387 4.095410 TGCTGGCGTTCAATTGATTTAG 57.905 40.909 9.40 5.35 0.00 1.85
352 388 2.854185 GCTGGCGTTCAATTGATTTAGC 59.146 45.455 9.40 11.82 0.00 3.09
353 389 3.673052 GCTGGCGTTCAATTGATTTAGCA 60.673 43.478 9.40 0.00 0.00 3.49
354 390 4.095410 TGGCGTTCAATTGATTTAGCAG 57.905 40.909 9.40 0.00 0.00 4.24
355 391 3.755905 TGGCGTTCAATTGATTTAGCAGA 59.244 39.130 9.40 1.41 0.00 4.26
356 392 4.217334 TGGCGTTCAATTGATTTAGCAGAA 59.783 37.500 9.40 0.81 0.00 3.02
357 393 4.795278 GGCGTTCAATTGATTTAGCAGAAG 59.205 41.667 9.40 0.00 0.00 2.85
358 394 5.391950 GGCGTTCAATTGATTTAGCAGAAGA 60.392 40.000 9.40 0.00 0.00 2.87
359 395 5.736358 GCGTTCAATTGATTTAGCAGAAGAG 59.264 40.000 9.40 0.00 0.00 2.85
360 396 6.253746 CGTTCAATTGATTTAGCAGAAGAGG 58.746 40.000 9.40 0.00 0.00 3.69
361 397 6.092670 CGTTCAATTGATTTAGCAGAAGAGGA 59.907 38.462 9.40 0.00 0.00 3.71
362 398 7.201679 CGTTCAATTGATTTAGCAGAAGAGGAT 60.202 37.037 9.40 0.00 0.00 3.24
363 399 8.465201 GTTCAATTGATTTAGCAGAAGAGGATT 58.535 33.333 9.40 0.00 0.00 3.01
364 400 9.685276 TTCAATTGATTTAGCAGAAGAGGATTA 57.315 29.630 9.40 0.00 0.00 1.75
365 401 9.113838 TCAATTGATTTAGCAGAAGAGGATTAC 57.886 33.333 3.38 0.00 0.00 1.89
366 402 8.896744 CAATTGATTTAGCAGAAGAGGATTACA 58.103 33.333 0.00 0.00 0.00 2.41
367 403 9.466497 AATTGATTTAGCAGAAGAGGATTACAA 57.534 29.630 0.00 0.00 0.00 2.41
368 404 8.862325 TTGATTTAGCAGAAGAGGATTACAAA 57.138 30.769 0.00 0.00 0.00 2.83
369 405 8.862325 TGATTTAGCAGAAGAGGATTACAAAA 57.138 30.769 0.00 0.00 0.00 2.44
370 406 9.295825 TGATTTAGCAGAAGAGGATTACAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
371 407 9.780413 GATTTAGCAGAAGAGGATTACAAAAAG 57.220 33.333 0.00 0.00 0.00 2.27
372 408 8.691661 TTTAGCAGAAGAGGATTACAAAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
373 409 6.809630 AGCAGAAGAGGATTACAAAAAGTC 57.190 37.500 0.00 0.00 0.00 3.01
374 410 6.538263 AGCAGAAGAGGATTACAAAAAGTCT 58.462 36.000 0.00 0.00 0.00 3.24
375 411 6.652900 AGCAGAAGAGGATTACAAAAAGTCTC 59.347 38.462 0.00 0.00 0.00 3.36
376 412 6.652900 GCAGAAGAGGATTACAAAAAGTCTCT 59.347 38.462 0.00 0.00 0.00 3.10
377 413 7.148490 GCAGAAGAGGATTACAAAAAGTCTCTC 60.148 40.741 0.00 0.00 30.81 3.20
378 414 7.875041 CAGAAGAGGATTACAAAAAGTCTCTCA 59.125 37.037 0.00 0.00 30.81 3.27
379 415 8.093927 AGAAGAGGATTACAAAAAGTCTCTCAG 58.906 37.037 0.00 0.00 30.81 3.35
380 416 7.546250 AGAGGATTACAAAAAGTCTCTCAGA 57.454 36.000 0.00 0.00 0.00 3.27
381 417 7.382898 AGAGGATTACAAAAAGTCTCTCAGAC 58.617 38.462 0.00 0.00 45.38 3.51
382 418 6.468543 AGGATTACAAAAAGTCTCTCAGACC 58.531 40.000 0.00 0.00 46.18 3.85
383 419 6.043243 AGGATTACAAAAAGTCTCTCAGACCA 59.957 38.462 0.00 0.00 46.18 4.02
384 420 6.710744 GGATTACAAAAAGTCTCTCAGACCAA 59.289 38.462 0.00 0.00 46.18 3.67
385 421 7.095017 GGATTACAAAAAGTCTCTCAGACCAAG 60.095 40.741 0.00 0.00 46.18 3.61
386 422 5.104259 ACAAAAAGTCTCTCAGACCAAGT 57.896 39.130 0.00 0.00 46.18 3.16
387 423 4.878397 ACAAAAAGTCTCTCAGACCAAGTG 59.122 41.667 0.00 0.00 46.18 3.16
388 424 3.760580 AAAGTCTCTCAGACCAAGTGG 57.239 47.619 0.00 0.00 46.18 4.00
389 425 0.972883 AGTCTCTCAGACCAAGTGGC 59.027 55.000 0.00 0.00 46.18 5.01
390 426 0.036858 GTCTCTCAGACCAAGTGGCC 60.037 60.000 0.00 0.00 39.28 5.36
391 427 1.079543 CTCTCAGACCAAGTGGCCG 60.080 63.158 0.00 0.00 39.32 6.13
392 428 2.046892 CTCAGACCAAGTGGCCGG 60.047 66.667 0.00 0.00 39.32 6.13
393 429 2.525629 TCAGACCAAGTGGCCGGA 60.526 61.111 5.05 0.00 39.32 5.14
481 526 3.869272 CGGCGTCATGAAGCAGCC 61.869 66.667 30.28 23.47 44.00 4.85
535 580 0.304705 GAACATACTGCGCAATCGGG 59.695 55.000 13.05 0.79 35.95 5.14
667 714 1.134175 GAGAGCAACGGAGAAGAGGAG 59.866 57.143 0.00 0.00 0.00 3.69
742 804 4.869440 CGCCTCTCCTGCGCAGAG 62.869 72.222 38.06 29.15 46.01 3.35
926 989 0.460987 CGAGCCGATTTGCTTCTCCT 60.461 55.000 0.00 0.00 42.95 3.69
930 993 1.131315 GCCGATTTGCTTCTCCTTGTC 59.869 52.381 0.00 0.00 0.00 3.18
931 994 1.740025 CCGATTTGCTTCTCCTTGTCC 59.260 52.381 0.00 0.00 0.00 4.02
932 995 2.616510 CCGATTTGCTTCTCCTTGTCCT 60.617 50.000 0.00 0.00 0.00 3.85
933 996 3.077359 CGATTTGCTTCTCCTTGTCCTT 58.923 45.455 0.00 0.00 0.00 3.36
934 997 3.120060 CGATTTGCTTCTCCTTGTCCTTG 60.120 47.826 0.00 0.00 0.00 3.61
935 998 3.297134 TTTGCTTCTCCTTGTCCTTGT 57.703 42.857 0.00 0.00 0.00 3.16
937 1000 1.490490 TGCTTCTCCTTGTCCTTGTGT 59.510 47.619 0.00 0.00 0.00 3.72
938 1001 1.876156 GCTTCTCCTTGTCCTTGTGTG 59.124 52.381 0.00 0.00 0.00 3.82
939 1002 2.485479 GCTTCTCCTTGTCCTTGTGTGA 60.485 50.000 0.00 0.00 0.00 3.58
1520 1613 1.960040 TTCCGGTCGCAGATGCAGAT 61.960 55.000 0.00 0.00 40.67 2.90
1698 1791 4.966787 TTCGCCACCAACCTGCCC 62.967 66.667 0.00 0.00 0.00 5.36
1812 1916 7.008628 CCACATTTAAACATCTCTGCGAAATTC 59.991 37.037 0.00 0.00 0.00 2.17
1813 1917 7.752239 CACATTTAAACATCTCTGCGAAATTCT 59.248 33.333 0.00 0.00 0.00 2.40
1814 1918 7.965107 ACATTTAAACATCTCTGCGAAATTCTC 59.035 33.333 0.00 0.00 0.00 2.87
1960 2068 2.458969 TAGTCCCTGGGGTTGCCGTA 62.459 60.000 14.00 0.00 36.47 4.02
1999 2107 1.829222 CCTCTGGCGGGTAAGTTTCTA 59.171 52.381 0.00 0.00 0.00 2.10
2001 2109 3.640029 CCTCTGGCGGGTAAGTTTCTATA 59.360 47.826 0.00 0.00 0.00 1.31
2040 2163 4.694339 ACTACTTGCCGAGATAATTGGTC 58.306 43.478 0.00 0.00 34.45 4.02
2042 2165 3.535561 ACTTGCCGAGATAATTGGTCAG 58.464 45.455 0.00 0.00 34.45 3.51
2043 2166 3.197766 ACTTGCCGAGATAATTGGTCAGA 59.802 43.478 0.00 0.00 34.45 3.27
2044 2167 4.141620 ACTTGCCGAGATAATTGGTCAGAT 60.142 41.667 0.00 0.00 34.45 2.90
2045 2168 3.732212 TGCCGAGATAATTGGTCAGATG 58.268 45.455 0.00 0.00 34.45 2.90
2046 2169 3.134623 TGCCGAGATAATTGGTCAGATGT 59.865 43.478 0.00 0.00 34.45 3.06
2061 2184 2.349580 CAGATGTGATGTAAGCGTGTGG 59.650 50.000 0.00 0.00 0.00 4.17
2062 2185 2.233676 AGATGTGATGTAAGCGTGTGGA 59.766 45.455 0.00 0.00 0.00 4.02
2121 2269 7.422399 TGATTGTAGTTAGGCAACAAAACTTC 58.578 34.615 0.00 0.00 40.82 3.01
2157 2575 5.435686 TGCATTAAGTAGTGGGTCTGATT 57.564 39.130 0.00 0.00 0.00 2.57
2318 2845 0.881118 ATGTTCCCATGTTGCGTCAC 59.119 50.000 0.00 0.00 0.00 3.67
2409 2949 3.468770 AGATGCATGTCAATCAGCTCTC 58.531 45.455 2.46 0.00 0.00 3.20
2428 2968 6.204495 AGCTCTCAGATCTTTGTTTCTTCAAC 59.796 38.462 0.00 0.00 35.71 3.18
2459 2999 5.103771 AGCTTGGATGAATGGGTTAGAGATT 60.104 40.000 0.00 0.00 0.00 2.40
2765 3308 5.375417 TGTGTAGTGCCAATCAGATTTTG 57.625 39.130 0.00 0.00 0.00 2.44
2768 3311 3.587797 AGTGCCAATCAGATTTTGCAG 57.412 42.857 14.68 0.00 30.75 4.41
2823 3368 3.935203 CTGCACAGAGGTGTACTTTATGG 59.065 47.826 0.00 0.00 46.95 2.74
2880 3425 3.802139 GGTGCCACTTTAGCAAAAAGAAC 59.198 43.478 15.97 9.32 43.02 3.01
2984 3532 3.827302 TCTAGGACCACAGACTGAAGTTC 59.173 47.826 10.08 4.69 0.00 3.01
3019 3571 6.179756 GGTGAGCATCTCTATCTGATCTCTA 58.820 44.000 0.00 0.00 34.92 2.43
3047 3599 8.974292 AATTTAGTCTCTTATATAGCCCCTCA 57.026 34.615 0.00 0.00 0.00 3.86
3133 3686 4.830046 TCTATCCTCACATGTAAGCCTCTC 59.170 45.833 0.00 0.00 0.00 3.20
3177 3730 3.909662 CCGGAACAGGCAATGGAG 58.090 61.111 0.00 0.00 0.00 3.86
3178 3731 2.409870 CCGGAACAGGCAATGGAGC 61.410 63.158 0.00 0.00 0.00 4.70
3179 3732 1.377725 CGGAACAGGCAATGGAGCT 60.378 57.895 0.00 0.00 34.17 4.09
3180 3733 0.107703 CGGAACAGGCAATGGAGCTA 60.108 55.000 0.00 0.00 34.17 3.32
3181 3734 1.673168 GGAACAGGCAATGGAGCTAG 58.327 55.000 0.00 0.00 34.17 3.42
3182 3735 1.020437 GAACAGGCAATGGAGCTAGC 58.980 55.000 6.62 6.62 34.17 3.42
3183 3736 0.745845 AACAGGCAATGGAGCTAGCG 60.746 55.000 9.55 0.00 34.17 4.26
3184 3737 1.890979 CAGGCAATGGAGCTAGCGG 60.891 63.158 9.55 0.00 34.17 5.52
3185 3738 2.592861 GGCAATGGAGCTAGCGGG 60.593 66.667 9.55 0.00 34.17 6.13
3186 3739 3.282920 GCAATGGAGCTAGCGGGC 61.283 66.667 9.55 2.80 0.00 6.13
3187 3740 2.507944 CAATGGAGCTAGCGGGCT 59.492 61.111 9.55 6.18 46.11 5.19
3188 3741 1.890979 CAATGGAGCTAGCGGGCTG 60.891 63.158 9.55 0.82 43.20 4.85
3513 4066 2.048316 GCATGGGCAAACAACCGG 60.048 61.111 0.00 0.00 40.72 5.28
3514 4067 2.048316 CATGGGCAAACAACCGGC 60.048 61.111 0.00 0.00 0.00 6.13
3515 4068 2.522923 ATGGGCAAACAACCGGCA 60.523 55.556 0.00 0.00 0.00 5.69
3516 4069 2.573083 ATGGGCAAACAACCGGCAG 61.573 57.895 0.00 0.00 0.00 4.85
3517 4070 3.989787 GGGCAAACAACCGGCAGG 61.990 66.667 0.00 0.00 45.13 4.85
3518 4071 4.662961 GGCAAACAACCGGCAGGC 62.663 66.667 0.00 0.00 42.76 4.85
3519 4072 3.910490 GCAAACAACCGGCAGGCA 61.910 61.111 0.00 0.00 42.76 4.75
3520 4073 2.336088 CAAACAACCGGCAGGCAG 59.664 61.111 0.00 0.00 42.76 4.85
3521 4074 2.912025 AAACAACCGGCAGGCAGG 60.912 61.111 0.00 8.95 42.76 4.85
3522 4075 3.429372 AAACAACCGGCAGGCAGGA 62.429 57.895 17.32 0.00 42.76 3.86
3523 4076 3.850098 AACAACCGGCAGGCAGGAG 62.850 63.158 17.32 10.97 42.76 3.69
3529 4082 4.479993 GGCAGGCAGGAGCATCGT 62.480 66.667 0.00 0.00 44.61 3.73
3536 4089 3.540211 CAGGAGCATCGTGGACTTT 57.460 52.632 0.00 0.00 46.52 2.66
3537 4090 1.081892 CAGGAGCATCGTGGACTTTG 58.918 55.000 0.00 0.00 46.52 2.77
3538 4091 0.976641 AGGAGCATCGTGGACTTTGA 59.023 50.000 0.00 0.00 34.37 2.69
3539 4092 1.079503 GGAGCATCGTGGACTTTGAC 58.920 55.000 0.00 0.00 34.37 3.18
3540 4093 1.079503 GAGCATCGTGGACTTTGACC 58.920 55.000 0.00 0.00 0.00 4.02
3541 4094 0.321653 AGCATCGTGGACTTTGACCC 60.322 55.000 0.00 0.00 0.00 4.46
3542 4095 1.635663 GCATCGTGGACTTTGACCCG 61.636 60.000 0.00 0.00 0.00 5.28
3543 4096 1.019278 CATCGTGGACTTTGACCCGG 61.019 60.000 0.00 0.00 0.00 5.73
3544 4097 2.798148 ATCGTGGACTTTGACCCGGC 62.798 60.000 0.00 0.00 0.00 6.13
3545 4098 2.430367 GTGGACTTTGACCCGGCT 59.570 61.111 0.00 0.00 0.00 5.52
3546 4099 1.671379 GTGGACTTTGACCCGGCTC 60.671 63.158 0.00 0.00 0.00 4.70
3547 4100 2.144078 TGGACTTTGACCCGGCTCA 61.144 57.895 0.00 0.00 0.00 4.26
3548 4101 1.671379 GGACTTTGACCCGGCTCAC 60.671 63.158 0.00 0.00 0.00 3.51
3549 4102 1.371558 GACTTTGACCCGGCTCACT 59.628 57.895 0.00 0.00 0.00 3.41
3550 4103 0.951040 GACTTTGACCCGGCTCACTG 60.951 60.000 0.00 0.00 0.00 3.66
3551 4104 1.672356 CTTTGACCCGGCTCACTGG 60.672 63.158 0.00 0.00 42.66 4.00
3552 4105 3.842925 TTTGACCCGGCTCACTGGC 62.843 63.158 0.00 0.00 41.53 4.85
3589 4142 4.421554 CCCCTGCCCCTCTCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
3590 4143 3.086600 CCCTGCCCCTCTCTCCAC 61.087 72.222 0.00 0.00 0.00 4.02
3591 4144 3.465403 CCTGCCCCTCTCTCCACG 61.465 72.222 0.00 0.00 0.00 4.94
3592 4145 2.363018 CTGCCCCTCTCTCCACGA 60.363 66.667 0.00 0.00 0.00 4.35
3593 4146 2.680352 TGCCCCTCTCTCCACGAC 60.680 66.667 0.00 0.00 0.00 4.34
3594 4147 2.363147 GCCCCTCTCTCCACGACT 60.363 66.667 0.00 0.00 0.00 4.18
3595 4148 2.716017 GCCCCTCTCTCCACGACTG 61.716 68.421 0.00 0.00 0.00 3.51
3596 4149 2.716017 CCCCTCTCTCCACGACTGC 61.716 68.421 0.00 0.00 0.00 4.40
3597 4150 2.487428 CCTCTCTCCACGACTGCG 59.513 66.667 0.00 0.00 44.79 5.18
3598 4151 2.202544 CTCTCTCCACGACTGCGC 60.203 66.667 0.00 0.00 42.48 6.09
3599 4152 3.691744 CTCTCTCCACGACTGCGCC 62.692 68.421 4.18 0.00 42.48 6.53
3660 4213 3.550431 CGGGTCATCTGGGCGGAT 61.550 66.667 0.00 0.00 0.00 4.18
3661 4214 2.919043 GGGTCATCTGGGCGGATT 59.081 61.111 0.00 0.00 0.00 3.01
3662 4215 1.227383 GGGTCATCTGGGCGGATTT 59.773 57.895 0.00 0.00 0.00 2.17
3663 4216 1.103398 GGGTCATCTGGGCGGATTTG 61.103 60.000 0.00 0.00 0.00 2.32
3664 4217 1.103398 GGTCATCTGGGCGGATTTGG 61.103 60.000 0.00 0.00 0.00 3.28
3665 4218 1.453745 TCATCTGGGCGGATTTGGC 60.454 57.895 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.280929 GCCCATCCTTTCTGTAACAGTTTT 59.719 41.667 0.00 0.00 32.61 2.43
127 128 2.893489 GCCACCACTTTCCTCTTTTGAT 59.107 45.455 0.00 0.00 0.00 2.57
145 146 2.397597 TGTAGAGTGATATGCTGGCCA 58.602 47.619 4.71 4.71 0.00 5.36
311 347 5.217978 AGCAATGCTGGATCTTTCAAAAA 57.782 34.783 7.07 0.00 37.57 1.94
312 348 4.877378 AGCAATGCTGGATCTTTCAAAA 57.123 36.364 7.07 0.00 37.57 2.44
325 361 0.604578 AATTGAACGCCAGCAATGCT 59.395 45.000 0.00 0.00 40.77 3.79
326 362 0.717224 CAATTGAACGCCAGCAATGC 59.283 50.000 0.00 0.00 35.11 3.56
327 363 2.350899 TCAATTGAACGCCAGCAATG 57.649 45.000 5.45 0.00 35.11 2.82
329 365 3.383620 AAATCAATTGAACGCCAGCAA 57.616 38.095 13.09 0.00 0.00 3.91
330 366 3.673052 GCTAAATCAATTGAACGCCAGCA 60.673 43.478 13.09 0.00 0.00 4.41
331 367 2.854185 GCTAAATCAATTGAACGCCAGC 59.146 45.455 13.09 12.54 0.00 4.85
332 368 4.095410 TGCTAAATCAATTGAACGCCAG 57.905 40.909 13.09 6.85 0.00 4.85
333 369 3.755905 TCTGCTAAATCAATTGAACGCCA 59.244 39.130 13.09 5.74 0.00 5.69
334 370 4.355543 TCTGCTAAATCAATTGAACGCC 57.644 40.909 13.09 1.26 0.00 5.68
335 371 5.631026 TCTTCTGCTAAATCAATTGAACGC 58.369 37.500 13.09 12.44 0.00 4.84
336 372 6.092670 TCCTCTTCTGCTAAATCAATTGAACG 59.907 38.462 13.09 2.53 0.00 3.95
337 373 7.383102 TCCTCTTCTGCTAAATCAATTGAAC 57.617 36.000 13.09 0.88 0.00 3.18
338 374 8.585471 AATCCTCTTCTGCTAAATCAATTGAA 57.415 30.769 13.09 0.00 0.00 2.69
339 375 9.113838 GTAATCCTCTTCTGCTAAATCAATTGA 57.886 33.333 11.26 11.26 0.00 2.57
340 376 8.896744 TGTAATCCTCTTCTGCTAAATCAATTG 58.103 33.333 0.00 0.00 0.00 2.32
341 377 9.466497 TTGTAATCCTCTTCTGCTAAATCAATT 57.534 29.630 0.00 0.00 0.00 2.32
342 378 9.466497 TTTGTAATCCTCTTCTGCTAAATCAAT 57.534 29.630 0.00 0.00 0.00 2.57
343 379 8.862325 TTTGTAATCCTCTTCTGCTAAATCAA 57.138 30.769 0.00 0.00 0.00 2.57
344 380 8.862325 TTTTGTAATCCTCTTCTGCTAAATCA 57.138 30.769 0.00 0.00 0.00 2.57
345 381 9.780413 CTTTTTGTAATCCTCTTCTGCTAAATC 57.220 33.333 0.00 0.00 0.00 2.17
346 382 9.301897 ACTTTTTGTAATCCTCTTCTGCTAAAT 57.698 29.630 0.00 0.00 0.00 1.40
347 383 8.691661 ACTTTTTGTAATCCTCTTCTGCTAAA 57.308 30.769 0.00 0.00 0.00 1.85
348 384 8.157476 AGACTTTTTGTAATCCTCTTCTGCTAA 58.843 33.333 0.00 0.00 0.00 3.09
349 385 7.680730 AGACTTTTTGTAATCCTCTTCTGCTA 58.319 34.615 0.00 0.00 0.00 3.49
350 386 6.538263 AGACTTTTTGTAATCCTCTTCTGCT 58.462 36.000 0.00 0.00 0.00 4.24
351 387 6.652900 AGAGACTTTTTGTAATCCTCTTCTGC 59.347 38.462 0.00 0.00 0.00 4.26
352 388 7.875041 TGAGAGACTTTTTGTAATCCTCTTCTG 59.125 37.037 0.00 0.00 30.59 3.02
353 389 7.967908 TGAGAGACTTTTTGTAATCCTCTTCT 58.032 34.615 0.00 0.00 30.59 2.85
354 390 8.091449 TCTGAGAGACTTTTTGTAATCCTCTTC 58.909 37.037 0.00 0.00 30.59 2.87
355 391 7.875554 GTCTGAGAGACTTTTTGTAATCCTCTT 59.124 37.037 0.00 0.00 41.88 2.85
356 392 7.382898 GTCTGAGAGACTTTTTGTAATCCTCT 58.617 38.462 0.00 0.00 41.88 3.69
357 393 6.592220 GGTCTGAGAGACTTTTTGTAATCCTC 59.408 42.308 3.85 0.00 44.46 3.71
358 394 6.043243 TGGTCTGAGAGACTTTTTGTAATCCT 59.957 38.462 3.85 0.00 44.46 3.24
359 395 6.231211 TGGTCTGAGAGACTTTTTGTAATCC 58.769 40.000 3.85 0.00 44.46 3.01
360 396 7.442666 ACTTGGTCTGAGAGACTTTTTGTAATC 59.557 37.037 3.85 0.00 44.46 1.75
361 397 7.227512 CACTTGGTCTGAGAGACTTTTTGTAAT 59.772 37.037 3.85 0.00 44.46 1.89
362 398 6.538742 CACTTGGTCTGAGAGACTTTTTGTAA 59.461 38.462 3.85 0.00 44.46 2.41
363 399 6.049149 CACTTGGTCTGAGAGACTTTTTGTA 58.951 40.000 3.85 0.00 44.46 2.41
364 400 4.878397 CACTTGGTCTGAGAGACTTTTTGT 59.122 41.667 3.85 0.00 44.46 2.83
365 401 4.274459 CCACTTGGTCTGAGAGACTTTTTG 59.726 45.833 3.85 0.00 44.46 2.44
366 402 4.455606 CCACTTGGTCTGAGAGACTTTTT 58.544 43.478 3.85 0.00 44.46 1.94
367 403 3.745797 GCCACTTGGTCTGAGAGACTTTT 60.746 47.826 3.85 0.00 44.46 2.27
368 404 2.224402 GCCACTTGGTCTGAGAGACTTT 60.224 50.000 3.85 0.00 44.46 2.66
369 405 1.346068 GCCACTTGGTCTGAGAGACTT 59.654 52.381 3.85 0.00 44.46 3.01
370 406 0.972883 GCCACTTGGTCTGAGAGACT 59.027 55.000 3.85 0.00 44.46 3.24
371 407 0.036858 GGCCACTTGGTCTGAGAGAC 60.037 60.000 0.00 0.00 44.32 3.36
372 408 1.536073 CGGCCACTTGGTCTGAGAGA 61.536 60.000 2.24 0.00 37.76 3.10
373 409 1.079543 CGGCCACTTGGTCTGAGAG 60.080 63.158 2.24 0.00 37.76 3.20
374 410 2.583441 CCGGCCACTTGGTCTGAGA 61.583 63.158 2.24 0.00 37.76 3.27
375 411 2.046892 CCGGCCACTTGGTCTGAG 60.047 66.667 2.24 0.00 37.76 3.35
376 412 1.701031 TTTCCGGCCACTTGGTCTGA 61.701 55.000 2.24 0.00 37.76 3.27
377 413 1.228124 TTTCCGGCCACTTGGTCTG 60.228 57.895 2.24 0.00 37.76 3.51
378 414 1.073199 CTTTCCGGCCACTTGGTCT 59.927 57.895 2.24 0.00 37.76 3.85
379 415 0.035739 TACTTTCCGGCCACTTGGTC 59.964 55.000 2.24 0.00 37.57 4.02
380 416 0.696501 ATACTTTCCGGCCACTTGGT 59.303 50.000 2.24 0.00 37.57 3.67
381 417 1.339631 TGATACTTTCCGGCCACTTGG 60.340 52.381 2.24 0.00 38.53 3.61
382 418 1.737793 GTGATACTTTCCGGCCACTTG 59.262 52.381 2.24 0.00 0.00 3.16
383 419 1.349688 TGTGATACTTTCCGGCCACTT 59.650 47.619 2.24 0.00 0.00 3.16
384 420 0.981183 TGTGATACTTTCCGGCCACT 59.019 50.000 2.24 0.00 0.00 4.00
385 421 1.816074 TTGTGATACTTTCCGGCCAC 58.184 50.000 2.24 0.00 0.00 5.01
386 422 2.554893 GTTTTGTGATACTTTCCGGCCA 59.445 45.455 2.24 0.00 0.00 5.36
387 423 2.413634 CGTTTTGTGATACTTTCCGGCC 60.414 50.000 0.00 0.00 0.00 6.13
388 424 2.481185 TCGTTTTGTGATACTTTCCGGC 59.519 45.455 0.00 0.00 0.00 6.13
389 425 4.939509 ATCGTTTTGTGATACTTTCCGG 57.060 40.909 0.00 0.00 0.00 5.14
390 426 7.075741 AGAAAATCGTTTTGTGATACTTTCCG 58.924 34.615 1.33 0.00 31.94 4.30
391 427 8.690840 CAAGAAAATCGTTTTGTGATACTTTCC 58.309 33.333 1.33 0.00 31.94 3.13
392 428 9.233232 ACAAGAAAATCGTTTTGTGATACTTTC 57.767 29.630 1.33 0.00 32.90 2.62
481 526 4.722700 CACTGAAGGCCGGGGTGG 62.723 72.222 2.18 0.00 42.50 4.61
535 580 1.986575 GCTCTGCTTCGGGTTCATGC 61.987 60.000 0.00 0.00 0.00 4.06
926 989 3.689161 CAGTTGAGTTCACACAAGGACAA 59.311 43.478 0.00 0.00 0.00 3.18
930 993 1.334869 GCCAGTTGAGTTCACACAAGG 59.665 52.381 0.00 0.00 0.00 3.61
931 994 1.003545 CGCCAGTTGAGTTCACACAAG 60.004 52.381 0.00 0.00 0.00 3.16
932 995 1.013596 CGCCAGTTGAGTTCACACAA 58.986 50.000 0.00 0.00 0.00 3.33
933 996 1.436195 GCGCCAGTTGAGTTCACACA 61.436 55.000 0.00 0.00 0.00 3.72
934 997 1.279840 GCGCCAGTTGAGTTCACAC 59.720 57.895 0.00 0.00 0.00 3.82
935 998 1.891919 GGCGCCAGTTGAGTTCACA 60.892 57.895 24.80 0.00 0.00 3.58
937 1000 2.664851 CGGCGCCAGTTGAGTTCA 60.665 61.111 28.98 0.00 0.00 3.18
938 1001 4.090057 GCGGCGCCAGTTGAGTTC 62.090 66.667 28.98 0.81 0.00 3.01
1114 1189 2.029307 GCCGGGACTAAGAGGCGATT 62.029 60.000 2.18 0.00 40.17 3.34
1116 1191 3.145551 GCCGGGACTAAGAGGCGA 61.146 66.667 2.18 0.00 40.17 5.54
1520 1613 2.839632 AGGCGCGGGAGATGATGA 60.840 61.111 8.83 0.00 0.00 2.92
1698 1791 2.087009 GTCGCCGAAGAGGTTGTCG 61.087 63.158 0.00 0.00 43.70 4.35
1812 1916 1.466167 CCAACACAATCAGAAGGCGAG 59.534 52.381 0.00 0.00 0.00 5.03
1813 1917 1.522668 CCAACACAATCAGAAGGCGA 58.477 50.000 0.00 0.00 0.00 5.54
1814 1918 0.109597 GCCAACACAATCAGAAGGCG 60.110 55.000 0.00 0.00 0.00 5.52
1960 2068 2.434185 TTGGCGCGCGAAGATTCT 60.434 55.556 37.18 0.00 0.00 2.40
1987 2095 8.910944 TGACAGTATGAGTATAGAAACTTACCC 58.089 37.037 0.00 0.00 39.69 3.69
2001 2109 7.013464 GGCAAGTAGTAGTATGACAGTATGAGT 59.987 40.741 0.00 0.00 39.69 3.41
2040 2163 2.349580 CCACACGCTTACATCACATCTG 59.650 50.000 0.00 0.00 0.00 2.90
2042 2165 2.616960 TCCACACGCTTACATCACATC 58.383 47.619 0.00 0.00 0.00 3.06
2043 2166 2.760634 TCCACACGCTTACATCACAT 57.239 45.000 0.00 0.00 0.00 3.21
2044 2167 2.535012 TTCCACACGCTTACATCACA 57.465 45.000 0.00 0.00 0.00 3.58
2045 2168 3.889196 TTTTCCACACGCTTACATCAC 57.111 42.857 0.00 0.00 0.00 3.06
2046 2169 4.517075 TGAATTTTCCACACGCTTACATCA 59.483 37.500 0.00 0.00 0.00 3.07
2121 2269 2.995466 AATGCAATCAACAGTGACCG 57.005 45.000 0.00 0.00 36.31 4.79
2157 2575 7.455058 TGCTTAAAATCAACAGGTAGGAGTTA 58.545 34.615 0.00 0.00 0.00 2.24
2409 2949 6.666417 CAGGAGTTGAAGAAACAAAGATCTG 58.334 40.000 0.00 0.00 41.61 2.90
2428 2968 1.676529 CATTCATCCAAGCTGCAGGAG 59.323 52.381 17.12 10.48 37.34 3.69
2459 2999 2.955660 GGTGTCAACCTCCATTGAACAA 59.044 45.455 0.00 0.00 43.84 2.83
2765 3308 6.528072 GCTAAAATGAAATCACCTTGTACTGC 59.472 38.462 0.00 0.00 0.00 4.40
2768 3311 6.961554 CGAGCTAAAATGAAATCACCTTGTAC 59.038 38.462 0.00 0.00 0.00 2.90
2823 3368 4.974399 TGACCTTTCCTCTCCTTTCTTTC 58.026 43.478 0.00 0.00 0.00 2.62
2880 3425 3.673809 CGGAAAAGTGGACTAAACTCTCG 59.326 47.826 0.00 0.00 0.00 4.04
2984 3532 1.331756 GATGCTCACCCGCAACAATAG 59.668 52.381 0.00 0.00 44.06 1.73
3047 3599 9.338622 CGGAACAAATATAAGGAGTTAAAGGAT 57.661 33.333 0.00 0.00 0.00 3.24
3153 3706 3.111038 GCCTGTTCCGGCTTATGC 58.889 61.111 0.00 0.00 46.63 3.14
3160 3713 2.409870 GCTCCATTGCCTGTTCCGG 61.410 63.158 0.00 0.00 0.00 5.14
3161 3714 0.107703 TAGCTCCATTGCCTGTTCCG 60.108 55.000 0.00 0.00 0.00 4.30
3162 3715 1.673168 CTAGCTCCATTGCCTGTTCC 58.327 55.000 0.00 0.00 0.00 3.62
3163 3716 1.020437 GCTAGCTCCATTGCCTGTTC 58.980 55.000 7.70 0.00 0.00 3.18
3164 3717 0.745845 CGCTAGCTCCATTGCCTGTT 60.746 55.000 13.93 0.00 0.00 3.16
3165 3718 1.153289 CGCTAGCTCCATTGCCTGT 60.153 57.895 13.93 0.00 0.00 4.00
3166 3719 1.890979 CCGCTAGCTCCATTGCCTG 60.891 63.158 13.93 0.00 0.00 4.85
3167 3720 2.507944 CCGCTAGCTCCATTGCCT 59.492 61.111 13.93 0.00 0.00 4.75
3168 3721 2.592861 CCCGCTAGCTCCATTGCC 60.593 66.667 13.93 0.00 0.00 4.52
3169 3722 3.282920 GCCCGCTAGCTCCATTGC 61.283 66.667 13.93 2.41 0.00 3.56
3170 3723 1.890979 CAGCCCGCTAGCTCCATTG 60.891 63.158 13.93 1.13 42.61 2.82
3171 3724 2.507944 CAGCCCGCTAGCTCCATT 59.492 61.111 13.93 0.00 42.61 3.16
3172 3725 4.247380 GCAGCCCGCTAGCTCCAT 62.247 66.667 13.93 0.00 42.61 3.41
3496 4049 2.048316 CCGGTTGTTTGCCCATGC 60.048 61.111 0.00 0.00 38.26 4.06
3497 4050 2.048316 GCCGGTTGTTTGCCCATG 60.048 61.111 1.90 0.00 0.00 3.66
3498 4051 2.522923 TGCCGGTTGTTTGCCCAT 60.523 55.556 1.90 0.00 0.00 4.00
3499 4052 3.222855 CTGCCGGTTGTTTGCCCA 61.223 61.111 1.90 0.00 0.00 5.36
3500 4053 3.989787 CCTGCCGGTTGTTTGCCC 61.990 66.667 1.90 0.00 0.00 5.36
3501 4054 4.662961 GCCTGCCGGTTGTTTGCC 62.663 66.667 1.90 0.00 0.00 4.52
3502 4055 3.846602 CTGCCTGCCGGTTGTTTGC 62.847 63.158 1.90 0.00 0.00 3.68
3503 4056 2.336088 CTGCCTGCCGGTTGTTTG 59.664 61.111 1.90 0.00 0.00 2.93
3504 4057 2.912025 CCTGCCTGCCGGTTGTTT 60.912 61.111 1.90 0.00 0.00 2.83
3505 4058 3.850098 CTCCTGCCTGCCGGTTGTT 62.850 63.158 1.90 0.00 0.00 2.83
3506 4059 4.335647 CTCCTGCCTGCCGGTTGT 62.336 66.667 1.90 0.00 0.00 3.32
3512 4065 4.479993 ACGATGCTCCTGCCTGCC 62.480 66.667 0.00 0.00 38.71 4.85
3513 4066 3.200593 CACGATGCTCCTGCCTGC 61.201 66.667 0.00 0.00 38.71 4.85
3514 4067 2.513204 CCACGATGCTCCTGCCTG 60.513 66.667 0.00 0.00 38.71 4.85
3515 4068 2.685017 TCCACGATGCTCCTGCCT 60.685 61.111 0.00 0.00 38.71 4.75
3516 4069 2.512515 GTCCACGATGCTCCTGCC 60.513 66.667 0.00 0.00 38.71 4.85
3517 4070 0.674895 AAAGTCCACGATGCTCCTGC 60.675 55.000 0.00 0.00 40.20 4.85
3518 4071 1.081892 CAAAGTCCACGATGCTCCTG 58.918 55.000 0.00 0.00 0.00 3.86
3519 4072 0.976641 TCAAAGTCCACGATGCTCCT 59.023 50.000 0.00 0.00 0.00 3.69
3520 4073 1.079503 GTCAAAGTCCACGATGCTCC 58.920 55.000 0.00 0.00 0.00 4.70
3521 4074 1.079503 GGTCAAAGTCCACGATGCTC 58.920 55.000 0.00 0.00 0.00 4.26
3522 4075 0.321653 GGGTCAAAGTCCACGATGCT 60.322 55.000 0.00 0.00 0.00 3.79
3523 4076 1.635663 CGGGTCAAAGTCCACGATGC 61.636 60.000 0.00 0.00 0.00 3.91
3524 4077 1.019278 CCGGGTCAAAGTCCACGATG 61.019 60.000 0.00 0.00 0.00 3.84
3525 4078 1.295423 CCGGGTCAAAGTCCACGAT 59.705 57.895 0.00 0.00 0.00 3.73
3526 4079 2.738480 CCGGGTCAAAGTCCACGA 59.262 61.111 0.00 0.00 0.00 4.35
3527 4080 3.047877 GCCGGGTCAAAGTCCACG 61.048 66.667 2.18 0.00 0.00 4.94
3528 4081 1.671379 GAGCCGGGTCAAAGTCCAC 60.671 63.158 28.27 0.00 0.00 4.02
3529 4082 2.144078 TGAGCCGGGTCAAAGTCCA 61.144 57.895 33.02 9.49 0.00 4.02
3530 4083 1.671379 GTGAGCCGGGTCAAAGTCC 60.671 63.158 36.14 20.44 0.00 3.85
3531 4084 0.951040 CAGTGAGCCGGGTCAAAGTC 60.951 60.000 36.14 23.67 0.00 3.01
3532 4085 1.071471 CAGTGAGCCGGGTCAAAGT 59.929 57.895 36.14 21.35 0.00 2.66
3533 4086 1.672356 CCAGTGAGCCGGGTCAAAG 60.672 63.158 36.14 28.50 0.00 2.77
3534 4087 2.429930 CCAGTGAGCCGGGTCAAA 59.570 61.111 36.14 14.08 0.00 2.69
3535 4088 4.329545 GCCAGTGAGCCGGGTCAA 62.330 66.667 36.14 18.65 0.00 3.18
3572 4125 4.421554 TGGAGAGAGGGGCAGGGG 62.422 72.222 0.00 0.00 0.00 4.79
3573 4126 3.086600 GTGGAGAGAGGGGCAGGG 61.087 72.222 0.00 0.00 0.00 4.45
3574 4127 3.465403 CGTGGAGAGAGGGGCAGG 61.465 72.222 0.00 0.00 0.00 4.85
3575 4128 2.363018 TCGTGGAGAGAGGGGCAG 60.363 66.667 0.00 0.00 0.00 4.85
3576 4129 2.680352 GTCGTGGAGAGAGGGGCA 60.680 66.667 0.00 0.00 0.00 5.36
3577 4130 2.363147 AGTCGTGGAGAGAGGGGC 60.363 66.667 0.00 0.00 0.00 5.80
3578 4131 2.716017 GCAGTCGTGGAGAGAGGGG 61.716 68.421 0.00 0.00 0.00 4.79
3579 4132 2.888863 GCAGTCGTGGAGAGAGGG 59.111 66.667 0.00 0.00 0.00 4.30
3580 4133 2.487428 CGCAGTCGTGGAGAGAGG 59.513 66.667 0.00 0.00 0.00 3.69
3581 4134 2.202544 GCGCAGTCGTGGAGAGAG 60.203 66.667 0.30 0.00 38.14 3.20
3582 4135 3.749064 GGCGCAGTCGTGGAGAGA 61.749 66.667 10.83 0.00 38.14 3.10
3643 4196 2.608970 AAATCCGCCCAGATGACCCG 62.609 60.000 0.00 0.00 0.00 5.28
3644 4197 1.103398 CAAATCCGCCCAGATGACCC 61.103 60.000 0.00 0.00 0.00 4.46
3645 4198 1.103398 CCAAATCCGCCCAGATGACC 61.103 60.000 0.00 0.00 0.00 4.02
3646 4199 1.728490 GCCAAATCCGCCCAGATGAC 61.728 60.000 0.00 0.00 0.00 3.06
3647 4200 1.453745 GCCAAATCCGCCCAGATGA 60.454 57.895 0.00 0.00 0.00 2.92
3648 4201 2.492773 GGCCAAATCCGCCCAGATG 61.493 63.158 0.00 0.00 40.78 2.90
3649 4202 2.123726 GGCCAAATCCGCCCAGAT 60.124 61.111 0.00 0.00 40.78 2.90
3650 4203 4.794648 CGGCCAAATCCGCCCAGA 62.795 66.667 2.24 0.00 43.98 3.86
3665 4218 4.907034 CGATGTCGTCGGCCTCGG 62.907 72.222 15.47 0.00 46.47 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.