Multiple sequence alignment - TraesCS6D01G202100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G202100 chr6D 100.000 4303 0 0 968 5270 285023776 285019474 0.000000e+00 7947.0
1 TraesCS6D01G202100 chr6D 100.000 582 0 0 1 582 285024743 285024162 0.000000e+00 1075.0
2 TraesCS6D01G202100 chr6B 93.528 2503 98 18 2783 5270 445884234 445881781 0.000000e+00 3666.0
3 TraesCS6D01G202100 chr6B 95.348 1827 67 12 968 2785 445886174 445884357 0.000000e+00 2887.0
4 TraesCS6D01G202100 chr6B 91.176 374 16 9 212 582 445886753 445886394 4.740000e-135 492.0
5 TraesCS6D01G202100 chr6B 90.047 211 20 1 1 211 445887764 445887555 6.720000e-69 272.0
6 TraesCS6D01G202100 chr6B 95.385 65 3 0 4872 4936 445882113 445882049 2.600000e-18 104.0
7 TraesCS6D01G202100 chr6A 91.991 1698 92 25 3582 5270 405448825 405447163 0.000000e+00 2342.0
8 TraesCS6D01G202100 chr6A 95.365 1165 42 8 968 2121 405451705 405450542 0.000000e+00 1842.0
9 TraesCS6D01G202100 chr6A 96.349 630 17 3 2168 2793 405450538 405449911 0.000000e+00 1031.0
10 TraesCS6D01G202100 chr6A 97.274 587 16 0 2997 3583 405449666 405449080 0.000000e+00 996.0
11 TraesCS6D01G202100 chr6A 88.601 386 17 11 211 582 405452285 405451913 1.350000e-120 444.0
12 TraesCS6D01G202100 chr6A 95.758 165 7 0 2791 2955 405449831 405449667 3.130000e-67 267.0
13 TraesCS6D01G202100 chr6A 91.713 181 15 0 4011 4191 405448436 405448256 8.760000e-63 252.0
14 TraesCS6D01G202100 chr6A 87.215 219 21 5 1 214 405452555 405452339 5.270000e-60 243.0
15 TraesCS6D01G202100 chr6A 83.436 163 27 0 3994 4156 405448381 405448219 9.140000e-33 152.0
16 TraesCS6D01G202100 chr6A 95.385 65 3 0 4872 4936 405447491 405447427 2.600000e-18 104.0
17 TraesCS6D01G202100 chr7A 85.393 178 18 4 5099 5270 25901185 25901010 1.510000e-40 178.0
18 TraesCS6D01G202100 chr7A 90.833 120 6 5 5151 5269 680408968 680408853 7.070000e-34 156.0
19 TraesCS6D01G202100 chr1D 85.326 184 13 6 5099 5270 379428773 379428592 1.510000e-40 178.0
20 TraesCS6D01G202100 chr1D 85.000 180 17 6 5099 5270 488824255 488824078 1.950000e-39 174.0
21 TraesCS6D01G202100 chr7B 90.769 130 7 4 5144 5270 663110013 663109886 9.080000e-38 169.0
22 TraesCS6D01G202100 chr1A 84.239 184 15 6 5099 5270 499392535 499392716 3.260000e-37 167.0
23 TraesCS6D01G202100 chr2A 84.239 184 14 5 5099 5270 109327417 109327237 1.170000e-36 165.0
24 TraesCS6D01G202100 chr5A 82.105 190 18 10 5095 5270 673087461 673087274 1.180000e-31 148.0
25 TraesCS6D01G202100 chr2D 86.822 129 13 3 5144 5270 33901914 33902040 1.980000e-29 141.0
26 TraesCS6D01G202100 chr5B 92.857 42 2 1 273 314 16777493 16777533 5.700000e-05 60.2
27 TraesCS6D01G202100 chr5B 92.857 42 2 1 273 314 16787245 16787285 5.700000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G202100 chr6D 285019474 285024743 5269 True 4511.0 7947 100.0000 1 5270 2 chr6D.!!$R1 5269
1 TraesCS6D01G202100 chr6B 445881781 445887764 5983 True 1484.2 3666 93.0968 1 5270 5 chr6B.!!$R1 5269
2 TraesCS6D01G202100 chr6A 405447163 405452555 5392 True 767.3 2342 92.3087 1 5270 10 chr6A.!!$R1 5269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.250338 GCAACAAGGAACGGAGAGGT 60.250 55.0 0.0 0.0 0.0 3.85 F
560 1391 0.691413 CTTCCCTCCCTACCCTCCAC 60.691 65.0 0.0 0.0 0.0 4.02 F
2197 3041 0.317770 ATGTTTTTGTGCGTGCGGAG 60.318 50.0 0.0 0.0 0.0 4.63 F
2830 3885 0.877649 AGTCAGCAAGCACACTCACG 60.878 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1194 2028 1.137479 GCAAGGGTATGTGCCGTACTA 59.863 52.381 0.00 0.00 34.58 1.82 R
2548 3395 1.065926 TCACTAGCATCACCAGCCAAG 60.066 52.381 0.00 0.00 0.00 3.61 R
4133 5460 1.376466 GGTGGTGACCTGCTGATGT 59.624 57.895 2.11 0.00 39.47 3.06 R
4702 6066 1.030488 AGCTGCAGACCATGATGTGC 61.030 55.000 20.43 1.22 36.42 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.003275 CGAAGAAACTAGCAAGCCAACAA 59.997 43.478 0.00 0.00 0.00 2.83
41 42 3.555966 AGAAACTAGCAAGCCAACAACT 58.444 40.909 0.00 0.00 0.00 3.16
94 95 0.250338 GCAACAAGGAACGGAGAGGT 60.250 55.000 0.00 0.00 0.00 3.85
141 142 3.373130 TCGACAGAATACGACAAGACGAT 59.627 43.478 0.00 0.00 37.03 3.73
157 158 5.039920 AGACGATGGGAATTGATGAATCA 57.960 39.130 0.00 0.00 34.44 2.57
181 182 5.384063 TCCATTGCAACGAACACATAATT 57.616 34.783 0.00 0.00 0.00 1.40
218 1034 1.826720 GTGTGGGCATGGTCATTCAAT 59.173 47.619 0.00 0.00 0.00 2.57
238 1054 4.927978 ATAGTCCGAACTGATGAAGAGG 57.072 45.455 0.00 0.00 36.92 3.69
241 1057 2.233922 GTCCGAACTGATGAAGAGGGAA 59.766 50.000 0.00 0.00 0.00 3.97
311 1127 8.903059 ATATATGGGGTGGTGTTTTCTAAAAA 57.097 30.769 0.00 0.00 0.00 1.94
332 1148 4.308526 AAAAACTCCCTTTTGGCCAAAA 57.691 36.364 35.22 35.22 37.90 2.44
333 1149 4.308526 AAAACTCCCTTTTGGCCAAAAA 57.691 36.364 36.27 24.39 39.49 1.94
476 1304 1.218704 CTTCCCCAATCCACATCCCAT 59.781 52.381 0.00 0.00 0.00 4.00
509 1337 2.025321 AGAATTCCGTAAATGCCCCTGT 60.025 45.455 0.65 0.00 0.00 4.00
560 1391 0.691413 CTTCCCTCCCTACCCTCCAC 60.691 65.000 0.00 0.00 0.00 4.02
1173 2006 3.640967 AGAGGTGAGATGCCTATGACTTC 59.359 47.826 0.00 0.00 36.29 3.01
1190 2024 7.730364 ATGACTTCGTTAACAATTCTGAAGT 57.270 32.000 18.36 18.36 46.14 3.01
1193 2027 8.545420 TGACTTCGTTAACAATTCTGAAGTTAC 58.455 33.333 18.95 11.61 44.22 2.50
1194 2028 8.658499 ACTTCGTTAACAATTCTGAAGTTACT 57.342 30.769 14.70 0.00 42.27 2.24
1202 2036 6.098017 ACAATTCTGAAGTTACTAGTACGGC 58.902 40.000 0.91 0.00 0.00 5.68
1256 2091 5.812642 GTGTGATATAACTACTGTGCTTGCT 59.187 40.000 0.00 0.00 0.00 3.91
1407 2242 4.747108 CGTGTGAAATTCAGAGTTGAGACT 59.253 41.667 0.00 0.00 39.32 3.24
1424 2259 7.397476 AGTTGAGACTATCTCTTGGTGAACATA 59.603 37.037 7.33 0.00 43.73 2.29
1492 2327 3.485394 TCTTAGTTGCATTGCTTGGTCA 58.515 40.909 10.49 0.00 0.00 4.02
1622 2460 6.169094 GCATGCATGTACAGGTCTTCTATAT 58.831 40.000 26.79 0.00 0.00 0.86
1627 2465 8.797438 TGCATGTACAGGTCTTCTATATCTTAG 58.203 37.037 9.57 0.00 0.00 2.18
1651 2489 8.015185 AGTTTTGATTGCCATATGCTAAAGAT 57.985 30.769 0.00 0.00 42.00 2.40
1796 2635 7.804129 GGTATCATCGTAGTAGTTCTAAAGCAG 59.196 40.741 0.00 0.00 0.00 4.24
1804 2643 2.005451 AGTTCTAAAGCAGATGCAGCG 58.995 47.619 7.68 0.00 45.16 5.18
1910 2753 4.882671 TTTGAACTCAACAGTCAAGAGC 57.117 40.909 0.00 0.00 35.28 4.09
2082 2926 2.086869 GCTGGCTTGCTGTTGATTAGA 58.913 47.619 0.00 0.00 0.00 2.10
2083 2927 2.686915 GCTGGCTTGCTGTTGATTAGAT 59.313 45.455 0.00 0.00 0.00 1.98
2197 3041 0.317770 ATGTTTTTGTGCGTGCGGAG 60.318 50.000 0.00 0.00 0.00 4.63
2497 3344 9.814899 CACTAATCACTTGTCTAGATTCTCATT 57.185 33.333 0.00 0.00 34.19 2.57
2548 3395 2.918712 TGGCCTAGCTAGCTCATTTC 57.081 50.000 23.26 9.12 0.00 2.17
2669 3517 2.295909 TGTCCATCAAAGGAAAAAGCCG 59.704 45.455 0.00 0.00 39.92 5.52
2762 3610 5.112129 ACCATGACCAGGAACTAATAACC 57.888 43.478 0.00 0.00 36.02 2.85
2830 3885 0.877649 AGTCAGCAAGCACACTCACG 60.878 55.000 0.00 0.00 0.00 4.35
2960 4015 8.477419 TCAAAATAAAGAAACTTGGATGACCT 57.523 30.769 0.00 0.00 37.04 3.85
3068 4123 6.840075 TGCTAAGACTTACGAGTTCTACTTC 58.160 40.000 0.00 0.00 35.88 3.01
3392 4448 1.597854 TGGCCACTTTGCACGAGAG 60.598 57.895 0.00 0.00 0.00 3.20
3569 4631 4.512944 GGCATGGACATGTGTTATCTGTAG 59.487 45.833 1.15 0.00 40.80 2.74
3670 4988 9.698309 CCTAGTAATATTTCTCAGTACATGTGG 57.302 37.037 9.11 0.00 0.00 4.17
3676 4994 3.850122 TCTCAGTACATGTGGAAGTCG 57.150 47.619 9.11 0.00 0.00 4.18
3737 5055 7.604164 AGTCCTATGTCATTTACTTCTGTGTTG 59.396 37.037 0.00 0.00 0.00 3.33
3738 5056 6.878923 TCCTATGTCATTTACTTCTGTGTTGG 59.121 38.462 0.00 0.00 0.00 3.77
3739 5057 6.878923 CCTATGTCATTTACTTCTGTGTTGGA 59.121 38.462 0.00 0.00 0.00 3.53
3740 5058 6.560253 ATGTCATTTACTTCTGTGTTGGAC 57.440 37.500 0.00 0.00 0.00 4.02
3741 5059 5.680619 TGTCATTTACTTCTGTGTTGGACT 58.319 37.500 0.00 0.00 0.00 3.85
3742 5060 5.527214 TGTCATTTACTTCTGTGTTGGACTG 59.473 40.000 0.00 0.00 0.00 3.51
3743 5061 5.527582 GTCATTTACTTCTGTGTTGGACTGT 59.472 40.000 0.00 0.00 0.00 3.55
3744 5062 6.038271 GTCATTTACTTCTGTGTTGGACTGTT 59.962 38.462 0.00 0.00 0.00 3.16
3765 5091 7.340999 ACTGTTGGTAAAGTGGTCTAATGTTTT 59.659 33.333 0.00 0.00 0.00 2.43
3842 5168 8.592105 ACATAAAATGTGAAGAACCATTTGTG 57.408 30.769 0.00 0.00 43.01 3.33
4044 5371 1.195115 GTATCAGCAGGTCTCCACCA 58.805 55.000 0.00 0.00 46.68 4.17
4176 5539 2.816958 CGCGCCAGAAGCATCAGT 60.817 61.111 0.00 0.00 44.04 3.41
4191 5554 1.116536 TCAGTAAGTCACCACCGCCA 61.117 55.000 0.00 0.00 0.00 5.69
4336 5699 5.901552 TCCACTTGTTTCCTTGAATGTTTC 58.098 37.500 0.00 0.00 0.00 2.78
4380 5743 0.651031 GGCCGAGTATTGTTCTTCGC 59.349 55.000 0.00 0.00 0.00 4.70
4439 5802 1.625818 AGCGGGATTTCTCTTGACTGT 59.374 47.619 0.00 0.00 0.00 3.55
4467 5830 5.163642 ACTCTAGCGTATGTAGTTGGTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
4524 5888 4.156455 ACTGTTGGATTATTCGGATGCT 57.844 40.909 0.00 0.00 0.00 3.79
4566 5930 7.013178 TGTGCTGATGAAACTGTTTCTTGAATA 59.987 33.333 27.75 11.78 40.32 1.75
4606 5970 7.113264 GTCTTGTTACGTTTCTGTTCTCTAGAC 59.887 40.741 0.00 0.00 0.00 2.59
4635 5999 5.977489 AGCCACTATTACGCATAGTCATA 57.023 39.130 5.13 0.00 44.32 2.15
4668 6032 7.037342 TCATGATCCTGATGACTATCTAGGA 57.963 40.000 0.00 0.00 41.04 2.94
4712 6076 8.657074 AATATTCAAAAGATTGCACATCATGG 57.343 30.769 10.26 0.00 36.45 3.66
4856 6220 0.392336 TTTTGGCATCCAACACCAGC 59.608 50.000 0.00 0.00 43.82 4.85
4904 6268 0.948678 ACCGGTCCACAATTTTGTCG 59.051 50.000 0.00 0.00 39.91 4.35
4937 6301 4.091800 CGCATGTTTGAAATCCCACAAATC 59.908 41.667 0.00 0.00 38.09 2.17
4955 6319 0.106918 TCCTTTTGCCGTCCAACACT 60.107 50.000 0.00 0.00 31.97 3.55
4970 6334 2.865551 CAACACTGGTCCACAATTTTGC 59.134 45.455 0.00 0.00 0.00 3.68
5000 6364 4.167502 AGATCCACATGTCTGAAATCCCAT 59.832 41.667 0.00 0.00 0.00 4.00
5041 6407 0.953960 GGGTTGCAGACGTTCGGATT 60.954 55.000 0.00 0.00 0.00 3.01
5097 6463 4.191544 CTCAAAATACCTCATCCGAAGCA 58.808 43.478 0.00 0.00 0.00 3.91
5127 6493 2.844362 CAGAGGCCGGGCTCCATA 60.844 66.667 44.31 0.00 0.00 2.74
5129 6495 3.631046 GAGGCCGGGCTCCATAGG 61.631 72.222 40.54 0.00 0.00 2.57
5259 6633 6.526325 TCGATTATTTGCATGCTACACAAAAC 59.474 34.615 20.33 4.15 36.90 2.43
5261 6635 7.148836 CGATTATTTGCATGCTACACAAAACAA 60.149 33.333 20.33 5.69 36.90 2.83
5262 6636 5.910637 ATTTGCATGCTACACAAAACAAG 57.089 34.783 20.33 0.00 36.90 3.16
5264 6638 4.852134 TGCATGCTACACAAAACAAGAT 57.148 36.364 20.33 0.00 0.00 2.40
5267 6641 6.743110 TGCATGCTACACAAAACAAGATAAA 58.257 32.000 20.33 0.00 0.00 1.40
5268 6642 7.377398 TGCATGCTACACAAAACAAGATAAAT 58.623 30.769 20.33 0.00 0.00 1.40
5269 6643 8.518702 TGCATGCTACACAAAACAAGATAAATA 58.481 29.630 20.33 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.209273 CGCGTTCAACATATGGGATCA 58.791 47.619 7.80 0.00 0.00 2.92
157 158 3.940209 ATGTGTTCGTTGCAATGGATT 57.060 38.095 18.37 0.00 0.00 3.01
202 203 2.887152 GGACTATTGAATGACCATGCCC 59.113 50.000 0.00 0.00 0.00 5.36
206 207 5.104941 TCAGTTCGGACTATTGAATGACCAT 60.105 40.000 0.00 0.00 33.90 3.55
218 1034 3.024547 CCCTCTTCATCAGTTCGGACTA 58.975 50.000 0.00 0.00 33.90 2.59
311 1127 4.308526 TTTTGGCCAAAAGGGAGTTTTT 57.691 36.364 34.56 0.00 36.11 1.94
332 1148 6.549736 TCCGGGATCTTTCTTTCTTTCTTTTT 59.450 34.615 0.00 0.00 0.00 1.94
333 1149 6.016192 GTCCGGGATCTTTCTTTCTTTCTTTT 60.016 38.462 0.00 0.00 0.00 2.27
334 1150 5.473846 GTCCGGGATCTTTCTTTCTTTCTTT 59.526 40.000 0.00 0.00 0.00 2.52
335 1151 5.004448 GTCCGGGATCTTTCTTTCTTTCTT 58.996 41.667 0.00 0.00 0.00 2.52
336 1152 4.580868 GTCCGGGATCTTTCTTTCTTTCT 58.419 43.478 0.00 0.00 0.00 2.52
337 1153 3.371285 CGTCCGGGATCTTTCTTTCTTTC 59.629 47.826 0.00 0.00 0.00 2.62
341 1157 2.667473 TCGTCCGGGATCTTTCTTTC 57.333 50.000 0.00 0.00 0.00 2.62
351 1167 2.429478 GGAAAGAAAAATCGTCCGGGA 58.571 47.619 0.00 0.00 0.00 5.14
418 1234 2.688507 TGAGTTGCCTCGTGATTTCTC 58.311 47.619 0.00 0.00 40.85 2.87
476 1304 4.210724 ACGGAATTCTCGTTTATTGGGA 57.789 40.909 13.89 0.00 37.61 4.37
1166 1999 7.730364 ACTTCAGAATTGTTAACGAAGTCAT 57.270 32.000 14.70 0.00 45.00 3.06
1190 2024 3.902218 AGGGTATGTGCCGTACTAGTAA 58.098 45.455 3.61 0.00 0.00 2.24
1193 2027 2.802057 GCAAGGGTATGTGCCGTACTAG 60.802 54.545 0.00 0.00 34.58 2.57
1194 2028 1.137479 GCAAGGGTATGTGCCGTACTA 59.863 52.381 0.00 0.00 34.58 1.82
1202 2036 5.123186 TCGTGAAAATAAGCAAGGGTATGTG 59.877 40.000 0.00 0.00 0.00 3.21
1256 2091 7.929245 TGAAACTACAACTTAGCATGTCTACAA 59.071 33.333 0.00 0.00 0.00 2.41
1407 2242 5.528690 GCTGCATTATGTTCACCAAGAGATA 59.471 40.000 0.00 0.00 0.00 1.98
1424 2259 3.225104 TCCTCAAACAGAAAGCTGCATT 58.775 40.909 1.02 0.00 46.26 3.56
1466 2301 7.227314 TGACCAAGCAATGCAACTAAGATATAG 59.773 37.037 8.35 0.00 0.00 1.31
1651 2489 9.938280 GCCTATTAACTTGTACCACATCATATA 57.062 33.333 0.00 0.00 0.00 0.86
1656 2494 6.995511 TTGCCTATTAACTTGTACCACATC 57.004 37.500 0.00 0.00 0.00 3.06
1726 2565 4.929808 ACTTCACTTAATGTTGCCTCTACG 59.070 41.667 0.00 0.00 0.00 3.51
1796 2635 4.273480 AGTCCAACATAATTACGCTGCATC 59.727 41.667 0.00 0.00 0.00 3.91
1804 2643 4.941263 TCACTGGCAGTCCAACATAATTAC 59.059 41.667 19.13 0.00 42.91 1.89
2002 2846 2.223340 CGCAAATACAAGATCCACCAGC 60.223 50.000 0.00 0.00 0.00 4.85
2082 2926 7.430441 ACCGCAGTTGTTAACTTAAAATCAAT 58.570 30.769 7.22 0.00 40.46 2.57
2083 2927 6.797454 ACCGCAGTTGTTAACTTAAAATCAA 58.203 32.000 7.22 0.00 40.46 2.57
2172 3016 3.434637 GCACGCACAAAAACATATAGGG 58.565 45.455 0.00 0.00 0.00 3.53
2197 3041 3.947834 AGTCAAAACCAATCGATCCCATC 59.052 43.478 0.00 0.00 0.00 3.51
2548 3395 1.065926 TCACTAGCATCACCAGCCAAG 60.066 52.381 0.00 0.00 0.00 3.61
2762 3610 8.214721 TGCTACAGGATTATAGATACTGATCG 57.785 38.462 5.30 0.00 37.15 3.69
2960 4015 9.914834 ATGATTTATAAGGTAGCTGTTTACCAA 57.085 29.630 6.18 0.00 44.56 3.67
3009 4064 7.374272 TCAAACTGAGTTGAACATGTTTCAAA 58.626 30.769 13.36 5.44 39.76 2.69
3011 4066 6.507958 TCAAACTGAGTTGAACATGTTTCA 57.492 33.333 13.36 11.18 34.59 2.69
3073 4128 7.821846 ACTTGCTCAAATCTAAGAGACCTTAAG 59.178 37.037 0.00 0.00 34.71 1.85
3670 4988 8.663911 AGAATCAGAAATTGAAGAATCGACTTC 58.336 33.333 8.46 8.46 44.31 3.01
3737 5055 3.487120 AGACCACTTTACCAACAGTCC 57.513 47.619 0.00 0.00 0.00 3.85
3738 5056 5.995897 ACATTAGACCACTTTACCAACAGTC 59.004 40.000 0.00 0.00 0.00 3.51
3739 5057 5.937111 ACATTAGACCACTTTACCAACAGT 58.063 37.500 0.00 0.00 0.00 3.55
3740 5058 6.877611 AACATTAGACCACTTTACCAACAG 57.122 37.500 0.00 0.00 0.00 3.16
3741 5059 7.201839 GGAAAACATTAGACCACTTTACCAACA 60.202 37.037 0.00 0.00 0.00 3.33
3742 5060 7.013942 AGGAAAACATTAGACCACTTTACCAAC 59.986 37.037 0.00 0.00 0.00 3.77
3743 5061 7.064229 AGGAAAACATTAGACCACTTTACCAA 58.936 34.615 0.00 0.00 0.00 3.67
3744 5062 6.607019 AGGAAAACATTAGACCACTTTACCA 58.393 36.000 0.00 0.00 0.00 3.25
3765 5091 4.193090 TGTAGCAGACAAAACGAAAAGGA 58.807 39.130 0.00 0.00 34.15 3.36
3842 5168 6.472163 CGGTAATTTGTTCCATCTGTTAATGC 59.528 38.462 0.00 0.00 0.00 3.56
4133 5460 1.376466 GGTGGTGACCTGCTGATGT 59.624 57.895 2.11 0.00 39.47 3.06
4176 5539 2.345991 GCTGGCGGTGGTGACTTA 59.654 61.111 0.00 0.00 0.00 2.24
4305 5668 3.507377 AAACAAGTGGAGGCCCCCG 62.507 63.158 0.00 0.00 0.00 5.73
4316 5679 4.401202 ACCGAAACATTCAAGGAAACAAGT 59.599 37.500 0.00 0.00 0.00 3.16
4336 5699 3.738982 TGGCCATTCAATAGTCATACCG 58.261 45.455 0.00 0.00 0.00 4.02
4380 5743 3.246699 CAGCAAAAGAACACAAATGCCAG 59.753 43.478 0.00 0.00 34.44 4.85
4439 5802 6.060136 ACCAACTACATACGCTAGAGTCATA 58.940 40.000 1.06 0.00 0.00 2.15
4524 5888 4.220163 TCAGCACATAAAAATCCATGCACA 59.780 37.500 0.00 0.00 35.51 4.57
4566 5930 5.119588 CGTAACAAGACGGTGACACATTAAT 59.880 40.000 8.08 0.00 39.19 1.40
4635 5999 8.446714 AGTCATCAGGATCATGATAGGTTTAT 57.553 34.615 21.55 0.00 37.84 1.40
4643 6007 7.650660 TCCTAGATAGTCATCAGGATCATGAT 58.349 38.462 16.87 16.87 40.59 2.45
4668 6032 1.538047 TCGTTCCGTGCTAGTACCTT 58.462 50.000 5.30 0.00 0.00 3.50
4702 6066 1.030488 AGCTGCAGACCATGATGTGC 61.030 55.000 20.43 1.22 36.42 4.57
4703 6067 2.320745 TAGCTGCAGACCATGATGTG 57.679 50.000 20.43 0.00 0.00 3.21
4712 6076 1.530646 GCATCGCTTTTAGCTGCAGAC 60.531 52.381 20.43 9.11 40.72 3.51
4728 6092 1.580845 AACAGCTGCCGTGAAGCATC 61.581 55.000 15.27 0.00 43.09 3.91
4904 6268 3.126001 TCAAACATGCGGATCTATCCC 57.874 47.619 3.39 0.00 44.24 3.85
4937 6301 0.030638 CAGTGTTGGACGGCAAAAGG 59.969 55.000 0.00 0.00 0.00 3.11
4955 6319 1.047002 CCAGGCAAAATTGTGGACCA 58.953 50.000 0.00 0.00 31.04 4.02
4983 6347 5.125417 CCGTTTTATGGGATTTCAGACATGT 59.875 40.000 0.00 0.00 0.00 3.21
5000 6364 4.057432 CTCCCGTGTTTACTTCCGTTTTA 58.943 43.478 0.00 0.00 0.00 1.52
5018 6382 1.671379 GAACGTCTGCAACCCTCCC 60.671 63.158 0.00 0.00 0.00 4.30
5021 6385 1.827399 ATCCGAACGTCTGCAACCCT 61.827 55.000 0.00 0.00 0.00 4.34
5041 6407 1.883926 TCAGAGTTCGACATGACGGAA 59.116 47.619 17.11 7.82 0.00 4.30
5097 6463 1.893808 CCTCTGCAACACCGCACTT 60.894 57.895 0.00 0.00 36.86 3.16
5123 6489 2.201927 GGCAAAACAGGCCCTATGG 58.798 57.895 0.00 0.00 45.87 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.