Multiple sequence alignment - TraesCS6D01G201800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G201800 chr6D 100.000 6174 0 0 1 6174 284389332 284395505 0.000000e+00 11402.0
1 TraesCS6D01G201800 chr6B 96.001 3576 107 14 2322 5894 444906031 444909573 0.000000e+00 5779.0
2 TraesCS6D01G201800 chr6B 90.628 1195 49 20 404 1572 444904050 444905207 0.000000e+00 1528.0
3 TraesCS6D01G201800 chr6B 93.898 803 35 5 1549 2338 444905216 444906017 0.000000e+00 1199.0
4 TraesCS6D01G201800 chr6A 94.035 3118 118 29 786 3887 404684651 404687716 0.000000e+00 4665.0
5 TraesCS6D01G201800 chr6A 95.047 2019 82 8 3885 5894 404687798 404689807 0.000000e+00 3158.0
6 TraesCS6D01G201800 chr6A 86.613 620 73 9 4 620 473579673 473579061 0.000000e+00 676.0
7 TraesCS6D01G201800 chr6A 92.683 164 8 4 5895 6057 2909410 2909250 3.720000e-57 233.0
8 TraesCS6D01G201800 chr6A 92.500 160 12 0 5895 6054 536664133 536664292 4.810000e-56 230.0
9 TraesCS6D01G201800 chr6A 96.063 127 5 0 653 779 404684397 404684523 2.260000e-49 207.0
10 TraesCS6D01G201800 chr7A 87.299 622 69 9 1 620 660547854 660548467 0.000000e+00 702.0
11 TraesCS6D01G201800 chr1D 86.977 622 71 9 1 620 250735679 250735066 0.000000e+00 691.0
12 TraesCS6D01G201800 chr1D 91.515 165 11 3 5895 6057 130670205 130670042 2.240000e-54 224.0
13 TraesCS6D01G201800 chr3B 86.922 627 67 12 4 620 93456312 93456933 0.000000e+00 689.0
14 TraesCS6D01G201800 chr3B 86.762 627 68 11 4 620 93356736 93357357 0.000000e+00 684.0
15 TraesCS6D01G201800 chr3B 96.552 58 2 0 5619 5676 351292250 351292307 5.090000e-16 97.1
16 TraesCS6D01G201800 chr7D 86.624 628 70 9 2 621 25074794 25074173 0.000000e+00 682.0
17 TraesCS6D01G201800 chr7D 91.304 161 13 1 5895 6054 463712338 463712498 1.040000e-52 219.0
18 TraesCS6D01G201800 chr7D 100.000 62 0 0 5614 5675 551735567 551735506 1.410000e-21 115.0
19 TraesCS6D01G201800 chr5A 86.645 629 66 13 4 620 216989666 216989044 0.000000e+00 680.0
20 TraesCS6D01G201800 chrUn 86.774 620 69 11 4 620 108822419 108821810 0.000000e+00 678.0
21 TraesCS6D01G201800 chr5D 86.517 623 68 12 1 620 431901112 431901721 0.000000e+00 671.0
22 TraesCS6D01G201800 chr5D 93.750 160 9 1 5895 6054 163793385 163793543 8.000000e-59 239.0
23 TraesCS6D01G201800 chr2D 93.125 160 10 1 5895 6054 272270925 272271083 3.720000e-57 233.0
24 TraesCS6D01G201800 chr3D 91.411 163 13 1 5895 6057 547450526 547450365 8.060000e-54 222.0
25 TraesCS6D01G201800 chr3D 91.875 160 12 1 5895 6054 604874284 604874442 8.060000e-54 222.0
26 TraesCS6D01G201800 chr3D 90.909 165 12 2 5895 6057 568184717 568184554 1.040000e-52 219.0
27 TraesCS6D01G201800 chr3D 96.610 59 0 2 5619 5675 213035735 213035677 5.090000e-16 97.1
28 TraesCS6D01G201800 chr1B 100.000 59 0 0 5619 5677 656234060 656234118 6.540000e-20 110.0
29 TraesCS6D01G201800 chr1B 96.667 60 0 1 5619 5678 354922690 354922747 1.420000e-16 99.0
30 TraesCS6D01G201800 chr2B 95.000 60 3 0 5616 5675 695378387 695378446 1.830000e-15 95.3
31 TraesCS6D01G201800 chr4B 92.424 66 3 2 5619 5683 661741625 661741561 6.590000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G201800 chr6D 284389332 284395505 6173 False 11402.000000 11402 100.000000 1 6174 1 chr6D.!!$F1 6173
1 TraesCS6D01G201800 chr6B 444904050 444909573 5523 False 2835.333333 5779 93.509000 404 5894 3 chr6B.!!$F1 5490
2 TraesCS6D01G201800 chr6A 404684397 404689807 5410 False 2676.666667 4665 95.048333 653 5894 3 chr6A.!!$F2 5241
3 TraesCS6D01G201800 chr6A 473579061 473579673 612 True 676.000000 676 86.613000 4 620 1 chr6A.!!$R2 616
4 TraesCS6D01G201800 chr7A 660547854 660548467 613 False 702.000000 702 87.299000 1 620 1 chr7A.!!$F1 619
5 TraesCS6D01G201800 chr1D 250735066 250735679 613 True 691.000000 691 86.977000 1 620 1 chr1D.!!$R2 619
6 TraesCS6D01G201800 chr3B 93456312 93456933 621 False 689.000000 689 86.922000 4 620 1 chr3B.!!$F2 616
7 TraesCS6D01G201800 chr3B 93356736 93357357 621 False 684.000000 684 86.762000 4 620 1 chr3B.!!$F1 616
8 TraesCS6D01G201800 chr7D 25074173 25074794 621 True 682.000000 682 86.624000 2 621 1 chr7D.!!$R1 619
9 TraesCS6D01G201800 chr5A 216989044 216989666 622 True 680.000000 680 86.645000 4 620 1 chr5A.!!$R1 616
10 TraesCS6D01G201800 chrUn 108821810 108822419 609 True 678.000000 678 86.774000 4 620 1 chrUn.!!$R1 616
11 TraesCS6D01G201800 chr5D 431901112 431901721 609 False 671.000000 671 86.517000 1 620 1 chr5D.!!$F2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 50 0.109458 CGTCGTCGGGAATCTCACAA 60.109 55.000 0.00 0.0 0.00 3.33 F
1306 1462 0.033601 TACGCTTTGGGGCATCCATT 60.034 50.000 0.00 0.0 46.52 3.16 F
1632 1830 1.178534 CCGGTGGTCTTTTGGCATGT 61.179 55.000 0.00 0.0 0.00 3.21 F
3058 3303 2.042162 ACCATTGGAAGGATGTTCTGCT 59.958 45.455 10.37 0.0 0.00 4.24 F
4488 4822 0.740737 AGCAACTTCAGGCAACACAC 59.259 50.000 0.00 0.0 41.41 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1984 0.690762 TGGGTGAGAGTGGCTAAACC 59.309 55.000 0.0 0.0 39.84 3.27 R
2345 2584 0.973632 TGAGCGTAGTGACCAACCAT 59.026 50.000 0.0 0.0 0.00 3.55 R
3624 3873 2.427506 CCCAACCTACAGAGAAACAGC 58.572 52.381 0.0 0.0 0.00 4.40 R
4927 5264 1.539065 CCAGATCCAGCGTACATCACC 60.539 57.143 0.0 0.0 0.00 4.02 R
5905 6247 0.033011 ACTAGCCCGTGAGATCTGGT 60.033 55.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.760875 TGGGCGTCACTATCCTCCC 60.761 63.158 0.00 0.00 0.00 4.30
25 26 0.755698 GGCGTCACTATCCTCCCTGA 60.756 60.000 0.00 0.00 0.00 3.86
48 50 0.109458 CGTCGTCGGGAATCTCACAA 60.109 55.000 0.00 0.00 0.00 3.33
60 62 1.801242 TCTCACAACCAGTTCTCCCA 58.199 50.000 0.00 0.00 0.00 4.37
94 96 0.897621 GGTGAAAGCCCAAATCCTGG 59.102 55.000 0.00 0.00 45.97 4.45
136 138 0.947660 GTCTTCAACGTCGTTCCCCC 60.948 60.000 7.86 0.00 0.00 5.40
247 249 1.320344 TGAGCTATGTCGGAGGCGTT 61.320 55.000 0.00 0.00 29.30 4.84
327 330 3.124636 GTGTGTTGTTGTGAAGTCGAAGT 59.875 43.478 0.00 0.00 0.00 3.01
330 333 2.572191 TGTTGTGAAGTCGAAGTCGT 57.428 45.000 0.00 0.00 40.80 4.34
355 358 1.750297 GGGCCGGTGGTATACGATT 59.250 57.895 1.90 0.00 0.00 3.34
365 368 2.613595 TGGTATACGATTACGCGTGACT 59.386 45.455 24.59 5.79 45.23 3.41
386 389 1.439679 GTGGTTCGTTCAGTGATCCC 58.560 55.000 0.00 0.00 0.00 3.85
394 398 1.347707 GTTCAGTGATCCCCTGTGACA 59.652 52.381 8.78 0.00 0.00 3.58
409 413 3.576982 CTGTGACACCAACCTTACCTAGA 59.423 47.826 2.45 0.00 0.00 2.43
416 420 5.045797 ACACCAACCTTACCTAGATTCCTTC 60.046 44.000 0.00 0.00 0.00 3.46
424 428 7.048512 CCTTACCTAGATTCCTTCGTGATTTT 58.951 38.462 0.00 0.00 0.00 1.82
431 435 5.704053 AGATTCCTTCGTGATTTTACCGTTT 59.296 36.000 0.00 0.00 0.00 3.60
435 439 3.799137 TCGTGATTTTACCGTTTGAGC 57.201 42.857 0.00 0.00 0.00 4.26
462 466 2.888594 TGCGCTGTCTAGTATGGTTTC 58.111 47.619 9.73 0.00 0.00 2.78
481 485 1.695893 CTATGGAGTGTTGTGCCGCG 61.696 60.000 0.00 0.00 0.00 6.46
725 744 0.611714 AATTCTACGGCCCACTCGTT 59.388 50.000 0.00 0.00 41.38 3.85
794 939 2.700322 TTTCCCCACCCACACCCA 60.700 61.111 0.00 0.00 0.00 4.51
795 940 2.994643 CTTTCCCCACCCACACCCAC 62.995 65.000 0.00 0.00 0.00 4.61
796 941 4.845307 TCCCCACCCACACCCACA 62.845 66.667 0.00 0.00 0.00 4.17
797 942 4.596585 CCCCACCCACACCCACAC 62.597 72.222 0.00 0.00 0.00 3.82
798 943 4.596585 CCCACCCACACCCACACC 62.597 72.222 0.00 0.00 0.00 4.16
799 944 4.596585 CCACCCACACCCACACCC 62.597 72.222 0.00 0.00 0.00 4.61
956 1101 2.736826 CGCTCCTTCTTCCTCCCCC 61.737 68.421 0.00 0.00 0.00 5.40
1088 1233 1.508632 TTCGCCTTTCTTTCCACGAG 58.491 50.000 0.00 0.00 0.00 4.18
1202 1347 1.448717 GCGAGAAGAGGTGGCTTCC 60.449 63.158 0.00 0.00 44.14 3.46
1216 1367 1.566298 GCTTCCTGGTGATCTGGGGT 61.566 60.000 0.00 0.00 35.44 4.95
1294 1445 7.496920 GGGATTTTGGTACTACTATTACGCTTT 59.503 37.037 0.00 0.00 0.00 3.51
1302 1458 2.572290 ACTATTACGCTTTGGGGCATC 58.428 47.619 0.00 0.00 0.00 3.91
1306 1462 0.033601 TACGCTTTGGGGCATCCATT 60.034 50.000 0.00 0.00 46.52 3.16
1486 1649 5.023533 TCGGCATATCTAGACTTGCTTTT 57.976 39.130 21.64 0.00 35.46 2.27
1487 1650 5.428253 TCGGCATATCTAGACTTGCTTTTT 58.572 37.500 21.64 0.00 35.46 1.94
1488 1651 5.523916 TCGGCATATCTAGACTTGCTTTTTC 59.476 40.000 21.64 9.13 35.46 2.29
1632 1830 1.178534 CCGGTGGTCTTTTGGCATGT 61.179 55.000 0.00 0.00 0.00 3.21
1690 1888 8.500753 TGACACTCTTGAAAGCTAACTTTTTA 57.499 30.769 0.00 0.00 46.20 1.52
1701 1899 9.288576 GAAAGCTAACTTTTTACCTAAAGGGTA 57.711 33.333 0.20 0.00 45.74 3.69
1739 1937 2.447408 AGCATCATGGCTTCATTCCA 57.553 45.000 0.00 0.00 42.71 3.53
1758 1956 4.624913 TCCAAGATGAAGGGTGACTCTAT 58.375 43.478 0.00 0.00 0.00 1.98
1785 1984 6.037610 GTGGATTATCAACTTAGAGCAACCTG 59.962 42.308 0.00 0.00 0.00 4.00
1787 1986 5.499004 TTATCAACTTAGAGCAACCTGGT 57.501 39.130 0.00 0.00 0.00 4.00
1789 1988 4.164843 TCAACTTAGAGCAACCTGGTTT 57.835 40.909 9.90 0.00 0.00 3.27
1799 1998 2.427506 CAACCTGGTTTAGCCACTCTC 58.572 52.381 9.90 0.00 43.61 3.20
1874 2073 8.275040 AGTGTATATAATTGGCTTGAAGGTCTT 58.725 33.333 0.00 0.00 0.00 3.01
1897 2096 8.928448 TCTTTTGTCTATATTATCTGGCTCTGT 58.072 33.333 0.00 0.00 0.00 3.41
1995 2203 7.369803 TCAGCATGAACAGAAAGTAGATTTC 57.630 36.000 0.00 0.00 45.97 2.17
2119 2327 7.465111 GCAGTTCTCAGTATGTGTATGATGTTG 60.465 40.741 0.00 0.00 37.40 3.33
2154 2362 8.682710 AGTTAGTACTTGAAAGATGTTTTTGCA 58.317 29.630 0.00 0.00 0.00 4.08
2297 2506 4.153117 GGTACATCTCATTTGGATGCGATC 59.847 45.833 0.00 0.00 42.88 3.69
2463 2702 3.181476 ACTCATTGTGTCCCAAAGTTTGC 60.181 43.478 10.25 0.00 36.44 3.68
2490 2734 6.951971 AGGAGTGCTTTTAGATGTCTACATT 58.048 36.000 0.00 0.00 36.57 2.71
2590 2835 5.654209 TCTCTGTATGAACACTCTATGCACT 59.346 40.000 0.00 0.00 0.00 4.40
2772 3017 7.067372 CCTTTCATAGATATGTTTGCACTTCCA 59.933 37.037 0.00 0.00 35.26 3.53
3058 3303 2.042162 ACCATTGGAAGGATGTTCTGCT 59.958 45.455 10.37 0.00 0.00 4.24
3241 3486 8.023128 ACAATAACATGATAAGAAAGTGTGTGC 58.977 33.333 0.00 0.00 0.00 4.57
3276 3525 6.771076 TGTTTTGAGCTTATACATGCTAACG 58.229 36.000 0.00 0.00 39.91 3.18
3446 3695 9.109393 TCTTTTCCTTTGTTAATCATATCCTCG 57.891 33.333 0.00 0.00 0.00 4.63
3459 3708 5.100259 TCATATCCTCGACTGTTCGTTTTC 58.900 41.667 0.00 0.00 46.01 2.29
3489 3738 2.159653 GCACTTACAAATCACCAGAGCG 60.160 50.000 0.00 0.00 0.00 5.03
3502 3751 2.271800 CCAGAGCGTAGGCAAGTTTAG 58.728 52.381 10.48 0.00 43.41 1.85
3624 3873 5.532406 CACCTTGTGATAATAACCCTCCATG 59.468 44.000 0.00 0.00 35.23 3.66
3860 4109 4.136796 TCATGCTATACCAACTTGATGGC 58.863 43.478 0.00 0.00 44.75 4.40
3879 4128 4.776349 TGGCCACATTCTTACGATGTTAT 58.224 39.130 0.00 0.00 0.00 1.89
3919 4252 1.611519 AGCTCCCTCTACTATCACGC 58.388 55.000 0.00 0.00 0.00 5.34
4216 4549 6.707161 TGTTGAATAAGCGGTTTTACAGTAGT 59.293 34.615 4.64 0.00 0.00 2.73
4308 4641 5.974108 AGTCTGCATAACCATAACGTAACT 58.026 37.500 0.00 0.00 0.00 2.24
4383 4717 5.063180 TGCTAGCCTGATTTTTGACATTG 57.937 39.130 13.29 0.00 0.00 2.82
4462 4796 9.794685 GAAATGTTCAATTTCCCTAAGATTCTC 57.205 33.333 0.29 0.00 33.24 2.87
4488 4822 0.740737 AGCAACTTCAGGCAACACAC 59.259 50.000 0.00 0.00 41.41 3.82
4557 4891 5.617751 GCTCTAAGCACAAGTAATTGGTGTG 60.618 44.000 7.93 11.54 41.89 3.82
4561 4895 4.144297 AGCACAAGTAATTGGTGTGTGAT 58.856 39.130 7.93 8.36 41.67 3.06
4630 4964 9.906660 TTAATGTGTAATTTTGTTAGCCTTCAG 57.093 29.630 0.00 0.00 0.00 3.02
4687 5021 1.052617 TGGTAGCAGTAGTGGCACAA 58.947 50.000 21.41 0.00 44.16 3.33
4747 5081 4.279671 GGACCTATCAGTGTCACTAGGATG 59.720 50.000 22.07 5.27 35.68 3.51
4772 5106 1.034356 TGCTGCTGTGCACTTCAAAT 58.966 45.000 19.41 0.00 38.12 2.32
4831 5168 6.075315 TCAGCTATACTGCCTTAACCTCATA 58.925 40.000 0.00 0.00 46.76 2.15
4846 5183 4.220724 ACCTCATATCAATGCTGCCAATT 58.779 39.130 0.00 0.00 32.76 2.32
4879 5216 2.636893 AGCAGAGTGCCCTCCTATAATG 59.363 50.000 0.00 0.00 46.52 1.90
4911 5248 9.890629 AAGTTGCTAACTATGTTATCTCAATGA 57.109 29.630 2.60 0.00 41.91 2.57
4927 5264 5.739752 TCAATGATTGAGCAGATAAACCG 57.260 39.130 3.29 0.00 34.08 4.44
5075 5412 6.499172 TCTTTCTATACACTGATTGCTCTCG 58.501 40.000 0.00 0.00 0.00 4.04
5080 5417 1.069204 ACACTGATTGCTCTCGTGTGT 59.931 47.619 12.14 11.01 36.26 3.72
5423 5760 4.789807 AGGTACTCGATTACTCTGCCTTA 58.210 43.478 12.09 0.00 0.00 2.69
5430 5767 4.570772 TCGATTACTCTGCCTTAACAATGC 59.429 41.667 0.00 0.00 0.00 3.56
5449 5786 5.914898 ATGCCCTGGTAAAAGTTGTATTC 57.085 39.130 0.00 0.00 0.00 1.75
5459 5796 7.282675 TGGTAAAAGTTGTATTCGGTTGAAAGA 59.717 33.333 0.00 0.00 37.71 2.52
5470 5807 9.244799 GTATTCGGTTGAAAGAAAAAGATTGTT 57.755 29.630 0.00 0.00 37.71 2.83
5492 5829 3.586429 TGGATATACTCTGTCATGGCCA 58.414 45.455 8.56 8.56 0.00 5.36
5569 5906 0.609131 AGCAGCATGGGTACAACCAC 60.609 55.000 0.00 0.00 44.72 4.16
5589 5926 2.436911 ACCGTCCTGAACAAAAGTACCT 59.563 45.455 0.00 0.00 0.00 3.08
5695 6037 7.056844 AGTAGTTCTCTAAGCTGTTTCAGTT 57.943 36.000 0.00 0.00 33.43 3.16
5706 6048 3.003378 GCTGTTTCAGTTGTAAGTGGGTC 59.997 47.826 0.02 0.00 33.43 4.46
5865 6207 4.520874 GGAGGAGCTAAGTTTTGCTTTCTT 59.479 41.667 2.54 0.00 39.29 2.52
5882 6224 2.790433 TCTTAGCGCCTTGTTTGGATT 58.210 42.857 2.29 0.00 0.00 3.01
5890 6232 2.560105 GCCTTGTTTGGATTCTGCTCTT 59.440 45.455 0.00 0.00 0.00 2.85
5894 6236 4.365514 TGTTTGGATTCTGCTCTTACCA 57.634 40.909 0.00 0.00 0.00 3.25
5895 6237 4.724399 TGTTTGGATTCTGCTCTTACCAA 58.276 39.130 0.00 0.00 35.95 3.67
5896 6238 5.324409 TGTTTGGATTCTGCTCTTACCAAT 58.676 37.500 0.00 0.00 37.28 3.16
5897 6239 5.774690 TGTTTGGATTCTGCTCTTACCAATT 59.225 36.000 0.00 0.00 37.28 2.32
5898 6240 6.945435 TGTTTGGATTCTGCTCTTACCAATTA 59.055 34.615 0.00 0.00 37.28 1.40
5899 6241 7.615365 TGTTTGGATTCTGCTCTTACCAATTAT 59.385 33.333 0.00 0.00 37.28 1.28
5900 6242 9.120538 GTTTGGATTCTGCTCTTACCAATTATA 57.879 33.333 0.00 0.00 37.28 0.98
5901 6243 9.866655 TTTGGATTCTGCTCTTACCAATTATAT 57.133 29.630 0.00 0.00 37.28 0.86
5902 6244 8.853077 TGGATTCTGCTCTTACCAATTATATG 57.147 34.615 0.00 0.00 0.00 1.78
5903 6245 8.659527 TGGATTCTGCTCTTACCAATTATATGA 58.340 33.333 0.00 0.00 0.00 2.15
5904 6246 9.160496 GGATTCTGCTCTTACCAATTATATGAG 57.840 37.037 7.14 7.14 0.00 2.90
5905 6247 9.935241 GATTCTGCTCTTACCAATTATATGAGA 57.065 33.333 12.51 0.00 0.00 3.27
5906 6248 9.717942 ATTCTGCTCTTACCAATTATATGAGAC 57.282 33.333 12.51 7.20 0.00 3.36
5907 6249 7.671302 TCTGCTCTTACCAATTATATGAGACC 58.329 38.462 12.51 2.04 0.00 3.85
5908 6250 7.290014 TCTGCTCTTACCAATTATATGAGACCA 59.710 37.037 12.51 5.04 0.00 4.02
5909 6251 7.445121 TGCTCTTACCAATTATATGAGACCAG 58.555 38.462 12.51 0.00 0.00 4.00
5910 6252 7.290014 TGCTCTTACCAATTATATGAGACCAGA 59.710 37.037 12.51 0.00 0.00 3.86
5911 6253 8.317679 GCTCTTACCAATTATATGAGACCAGAT 58.682 37.037 12.51 0.00 0.00 2.90
5912 6254 9.868277 CTCTTACCAATTATATGAGACCAGATC 57.132 37.037 6.17 0.00 0.00 2.75
5913 6255 9.607333 TCTTACCAATTATATGAGACCAGATCT 57.393 33.333 0.00 0.00 41.91 2.75
5920 6262 3.622514 AGACCAGATCTCACGGGC 58.377 61.111 0.00 0.00 28.16 6.13
5921 6263 1.000993 AGACCAGATCTCACGGGCT 59.999 57.895 0.00 0.00 28.16 5.19
5922 6264 0.259065 AGACCAGATCTCACGGGCTA 59.741 55.000 4.07 0.00 28.16 3.93
5923 6265 0.671251 GACCAGATCTCACGGGCTAG 59.329 60.000 0.00 0.00 0.00 3.42
5924 6266 0.033011 ACCAGATCTCACGGGCTAGT 60.033 55.000 0.00 0.00 0.00 2.57
5925 6267 1.214673 ACCAGATCTCACGGGCTAGTA 59.785 52.381 0.00 0.00 0.00 1.82
5926 6268 2.158445 ACCAGATCTCACGGGCTAGTAT 60.158 50.000 0.00 0.00 0.00 2.12
5927 6269 2.490115 CCAGATCTCACGGGCTAGTATC 59.510 54.545 0.00 0.00 0.00 2.24
5928 6270 3.417101 CAGATCTCACGGGCTAGTATCT 58.583 50.000 0.00 0.00 0.00 1.98
5929 6271 3.190327 CAGATCTCACGGGCTAGTATCTG 59.810 52.174 0.00 0.00 34.69 2.90
5930 6272 3.073209 AGATCTCACGGGCTAGTATCTGA 59.927 47.826 0.00 0.00 0.00 3.27
5931 6273 2.852449 TCTCACGGGCTAGTATCTGAG 58.148 52.381 0.00 0.00 0.00 3.35
5932 6274 2.438392 TCTCACGGGCTAGTATCTGAGA 59.562 50.000 7.73 7.73 0.00 3.27
5933 6275 2.550606 CTCACGGGCTAGTATCTGAGAC 59.449 54.545 0.00 0.00 0.00 3.36
5934 6276 1.609555 CACGGGCTAGTATCTGAGACC 59.390 57.143 0.00 0.00 37.53 3.85
5935 6277 1.249407 CGGGCTAGTATCTGAGACCC 58.751 60.000 0.00 0.00 37.62 4.46
5936 6278 1.478837 CGGGCTAGTATCTGAGACCCA 60.479 57.143 4.68 0.00 37.62 4.51
5937 6279 2.819726 CGGGCTAGTATCTGAGACCCAT 60.820 54.545 4.68 0.00 37.62 4.00
5938 6280 2.829120 GGGCTAGTATCTGAGACCCATC 59.171 54.545 0.00 0.00 34.39 3.51
5939 6281 3.501385 GGGCTAGTATCTGAGACCCATCT 60.501 52.174 0.00 0.00 34.39 2.90
5940 6282 4.156477 GGCTAGTATCTGAGACCCATCTT 58.844 47.826 0.00 0.00 34.34 2.40
5941 6283 4.021544 GGCTAGTATCTGAGACCCATCTTG 60.022 50.000 0.00 0.00 34.34 3.02
5942 6284 4.830046 GCTAGTATCTGAGACCCATCTTGA 59.170 45.833 0.00 0.00 34.34 3.02
5943 6285 5.480073 GCTAGTATCTGAGACCCATCTTGAT 59.520 44.000 0.00 0.00 34.34 2.57
5944 6286 5.804944 AGTATCTGAGACCCATCTTGATG 57.195 43.478 0.00 3.77 34.34 3.07
5945 6287 4.592351 AGTATCTGAGACCCATCTTGATGG 59.408 45.833 19.73 19.73 41.34 3.51
5946 6288 3.120468 TCTGAGACCCATCTTGATGGA 57.880 47.619 26.19 8.97 44.39 3.41
5947 6289 3.662078 TCTGAGACCCATCTTGATGGAT 58.338 45.455 26.19 13.41 44.39 3.41
5948 6290 3.390311 TCTGAGACCCATCTTGATGGATG 59.610 47.826 26.19 15.20 44.39 3.51
5949 6291 3.387012 TGAGACCCATCTTGATGGATGA 58.613 45.455 26.19 7.60 44.01 2.92
5950 6292 3.135348 TGAGACCCATCTTGATGGATGAC 59.865 47.826 26.19 16.12 44.01 3.06
5951 6293 3.117745 AGACCCATCTTGATGGATGACA 58.882 45.455 26.19 0.00 44.01 3.58
5952 6294 3.720526 AGACCCATCTTGATGGATGACAT 59.279 43.478 26.19 8.19 44.01 3.06
5953 6295 3.819337 GACCCATCTTGATGGATGACATG 59.181 47.826 26.19 12.81 44.01 3.21
5954 6296 3.203710 ACCCATCTTGATGGATGACATGT 59.796 43.478 26.19 13.35 44.01 3.21
5955 6297 3.568430 CCCATCTTGATGGATGACATGTG 59.432 47.826 26.19 6.75 44.01 3.21
5956 6298 3.568430 CCATCTTGATGGATGACATGTGG 59.432 47.826 21.56 0.00 44.01 4.17
5957 6299 2.646930 TCTTGATGGATGACATGTGGC 58.353 47.619 1.15 0.00 40.72 5.01
5958 6300 2.026075 TCTTGATGGATGACATGTGGCA 60.026 45.455 1.15 0.00 40.72 4.92
5960 6302 3.021177 TGATGGATGACATGTGGCATT 57.979 42.857 1.15 0.00 45.42 3.56
5961 6303 3.367321 TGATGGATGACATGTGGCATTT 58.633 40.909 1.15 0.00 45.42 2.32
5962 6304 4.534797 TGATGGATGACATGTGGCATTTA 58.465 39.130 1.15 0.00 45.42 1.40
5963 6305 4.338964 TGATGGATGACATGTGGCATTTAC 59.661 41.667 1.15 0.00 45.42 2.01
5964 6306 3.694926 TGGATGACATGTGGCATTTACA 58.305 40.909 1.15 0.85 45.42 2.41
5965 6307 4.085009 TGGATGACATGTGGCATTTACAA 58.915 39.130 1.15 0.00 45.42 2.41
5966 6308 4.525874 TGGATGACATGTGGCATTTACAAA 59.474 37.500 1.15 0.00 45.42 2.83
5967 6309 5.187381 TGGATGACATGTGGCATTTACAAAT 59.813 36.000 1.15 0.00 45.42 2.32
5968 6310 5.750067 GGATGACATGTGGCATTTACAAATC 59.250 40.000 1.15 0.00 45.42 2.17
5969 6311 5.718724 TGACATGTGGCATTTACAAATCA 57.281 34.783 1.15 0.00 0.00 2.57
5970 6312 5.468592 TGACATGTGGCATTTACAAATCAC 58.531 37.500 1.15 0.00 0.00 3.06
5971 6313 5.010415 TGACATGTGGCATTTACAAATCACA 59.990 36.000 1.15 10.05 37.46 3.58
5972 6314 5.851720 ACATGTGGCATTTACAAATCACAA 58.148 33.333 0.00 0.46 36.97 3.33
5973 6315 6.286758 ACATGTGGCATTTACAAATCACAAA 58.713 32.000 0.00 0.00 36.97 2.83
5974 6316 6.424509 ACATGTGGCATTTACAAATCACAAAG 59.575 34.615 0.00 9.86 36.97 2.77
5975 6317 4.749099 TGTGGCATTTACAAATCACAAAGC 59.251 37.500 6.70 0.00 33.13 3.51
5976 6318 4.749099 GTGGCATTTACAAATCACAAAGCA 59.251 37.500 0.00 0.00 0.00 3.91
5977 6319 5.409214 GTGGCATTTACAAATCACAAAGCAT 59.591 36.000 0.00 0.00 0.00 3.79
5978 6320 5.638657 TGGCATTTACAAATCACAAAGCATC 59.361 36.000 0.00 0.00 0.00 3.91
5979 6321 5.870978 GGCATTTACAAATCACAAAGCATCT 59.129 36.000 0.00 0.00 0.00 2.90
5980 6322 7.035004 GGCATTTACAAATCACAAAGCATCTA 58.965 34.615 0.00 0.00 0.00 1.98
5981 6323 7.009540 GGCATTTACAAATCACAAAGCATCTAC 59.990 37.037 0.00 0.00 0.00 2.59
5982 6324 7.009540 GCATTTACAAATCACAAAGCATCTACC 59.990 37.037 0.00 0.00 0.00 3.18
5983 6325 6.509418 TTACAAATCACAAAGCATCTACCC 57.491 37.500 0.00 0.00 0.00 3.69
5984 6326 3.763897 ACAAATCACAAAGCATCTACCCC 59.236 43.478 0.00 0.00 0.00 4.95
5985 6327 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
5986 6328 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
5987 6329 1.004277 TCACAAAGCATCTACCCCACC 59.996 52.381 0.00 0.00 0.00 4.61
5988 6330 0.331616 ACAAAGCATCTACCCCACCC 59.668 55.000 0.00 0.00 0.00 4.61
5989 6331 0.395724 CAAAGCATCTACCCCACCCC 60.396 60.000 0.00 0.00 0.00 4.95
5990 6332 0.552615 AAAGCATCTACCCCACCCCT 60.553 55.000 0.00 0.00 0.00 4.79
5991 6333 0.552615 AAGCATCTACCCCACCCCTT 60.553 55.000 0.00 0.00 0.00 3.95
5992 6334 0.345502 AGCATCTACCCCACCCCTTA 59.654 55.000 0.00 0.00 0.00 2.69
5993 6335 0.472898 GCATCTACCCCACCCCTTAC 59.527 60.000 0.00 0.00 0.00 2.34
5994 6336 1.975196 GCATCTACCCCACCCCTTACT 60.975 57.143 0.00 0.00 0.00 2.24
5995 6337 2.488836 CATCTACCCCACCCCTTACTT 58.511 52.381 0.00 0.00 0.00 2.24
5996 6338 1.961133 TCTACCCCACCCCTTACTTG 58.039 55.000 0.00 0.00 0.00 3.16
5997 6339 1.437945 TCTACCCCACCCCTTACTTGA 59.562 52.381 0.00 0.00 0.00 3.02
5998 6340 2.157973 TCTACCCCACCCCTTACTTGAA 60.158 50.000 0.00 0.00 0.00 2.69
5999 6341 1.536644 ACCCCACCCCTTACTTGAAA 58.463 50.000 0.00 0.00 0.00 2.69
6000 6342 2.078611 ACCCCACCCCTTACTTGAAAT 58.921 47.619 0.00 0.00 0.00 2.17
6001 6343 2.042569 ACCCCACCCCTTACTTGAAATC 59.957 50.000 0.00 0.00 0.00 2.17
6002 6344 2.042433 CCCCACCCCTTACTTGAAATCA 59.958 50.000 0.00 0.00 0.00 2.57
6003 6345 3.356290 CCCACCCCTTACTTGAAATCAG 58.644 50.000 0.00 0.00 0.00 2.90
6004 6346 3.356290 CCACCCCTTACTTGAAATCAGG 58.644 50.000 0.00 0.00 0.00 3.86
6005 6347 3.356290 CACCCCTTACTTGAAATCAGGG 58.644 50.000 0.00 0.00 39.33 4.45
6006 6348 3.010138 CACCCCTTACTTGAAATCAGGGA 59.990 47.826 9.44 0.00 37.29 4.20
6007 6349 3.267031 ACCCCTTACTTGAAATCAGGGAG 59.733 47.826 9.44 2.02 37.29 4.30
6008 6350 3.372025 CCCCTTACTTGAAATCAGGGAGG 60.372 52.174 3.98 7.82 37.29 4.30
6009 6351 3.523564 CCCTTACTTGAAATCAGGGAGGA 59.476 47.826 14.56 0.00 37.29 3.71
6010 6352 4.384647 CCCTTACTTGAAATCAGGGAGGAG 60.385 50.000 14.56 5.64 37.29 3.69
6011 6353 4.471386 CCTTACTTGAAATCAGGGAGGAGA 59.529 45.833 9.96 0.00 34.57 3.71
6012 6354 5.396213 CCTTACTTGAAATCAGGGAGGAGAG 60.396 48.000 9.96 0.00 34.57 3.20
6013 6355 3.796111 ACTTGAAATCAGGGAGGAGAGA 58.204 45.455 0.00 0.00 0.00 3.10
6014 6356 4.369872 ACTTGAAATCAGGGAGGAGAGAT 58.630 43.478 0.00 0.00 0.00 2.75
6015 6357 4.787534 ACTTGAAATCAGGGAGGAGAGATT 59.212 41.667 0.00 0.00 32.45 2.40
6016 6358 5.966935 ACTTGAAATCAGGGAGGAGAGATTA 59.033 40.000 0.00 0.00 31.01 1.75
6017 6359 6.099557 ACTTGAAATCAGGGAGGAGAGATTAG 59.900 42.308 0.00 0.00 31.01 1.73
6018 6360 5.781827 TGAAATCAGGGAGGAGAGATTAGA 58.218 41.667 0.00 0.00 31.01 2.10
6019 6361 6.388814 TGAAATCAGGGAGGAGAGATTAGAT 58.611 40.000 0.00 0.00 31.01 1.98
6020 6362 6.269538 TGAAATCAGGGAGGAGAGATTAGATG 59.730 42.308 0.00 0.00 31.01 2.90
6021 6363 3.505386 TCAGGGAGGAGAGATTAGATGC 58.495 50.000 0.00 0.00 0.00 3.91
6022 6364 3.141838 TCAGGGAGGAGAGATTAGATGCT 59.858 47.826 0.00 0.00 0.00 3.79
6023 6365 3.903090 CAGGGAGGAGAGATTAGATGCTT 59.097 47.826 0.00 0.00 0.00 3.91
6024 6366 4.347583 CAGGGAGGAGAGATTAGATGCTTT 59.652 45.833 0.00 0.00 0.00 3.51
6025 6367 5.541868 CAGGGAGGAGAGATTAGATGCTTTA 59.458 44.000 0.00 0.00 0.00 1.85
6026 6368 6.213195 CAGGGAGGAGAGATTAGATGCTTTAT 59.787 42.308 0.00 0.00 0.00 1.40
6027 6369 6.213195 AGGGAGGAGAGATTAGATGCTTTATG 59.787 42.308 0.00 0.00 0.00 1.90
6028 6370 6.212388 GGGAGGAGAGATTAGATGCTTTATGA 59.788 42.308 0.00 0.00 0.00 2.15
6029 6371 7.092935 GGGAGGAGAGATTAGATGCTTTATGAT 60.093 40.741 0.00 0.00 0.00 2.45
6030 6372 8.320617 GGAGGAGAGATTAGATGCTTTATGATT 58.679 37.037 0.00 0.00 0.00 2.57
6031 6373 9.723601 GAGGAGAGATTAGATGCTTTATGATTT 57.276 33.333 0.00 0.00 0.00 2.17
6041 6383 8.185506 AGATGCTTTATGATTTATGAATGCCA 57.814 30.769 0.00 0.00 0.00 4.92
6042 6384 8.086522 AGATGCTTTATGATTTATGAATGCCAC 58.913 33.333 0.00 0.00 0.00 5.01
6043 6385 6.207928 TGCTTTATGATTTATGAATGCCACG 58.792 36.000 0.00 0.00 0.00 4.94
6044 6386 6.183360 TGCTTTATGATTTATGAATGCCACGT 60.183 34.615 0.00 0.00 0.00 4.49
6045 6387 6.142798 GCTTTATGATTTATGAATGCCACGTG 59.857 38.462 9.08 9.08 0.00 4.49
6046 6388 6.691754 TTATGATTTATGAATGCCACGTGT 57.308 33.333 15.65 0.00 0.00 4.49
6047 6389 4.614555 TGATTTATGAATGCCACGTGTC 57.385 40.909 15.65 0.98 0.00 3.67
6048 6390 4.006319 TGATTTATGAATGCCACGTGTCA 58.994 39.130 15.65 8.63 0.00 3.58
6049 6391 4.639755 TGATTTATGAATGCCACGTGTCAT 59.360 37.500 19.43 19.43 35.05 3.06
6050 6392 4.614555 TTTATGAATGCCACGTGTCATC 57.385 40.909 19.16 11.02 32.99 2.92
6051 6393 1.382522 ATGAATGCCACGTGTCATCC 58.617 50.000 13.12 0.00 0.00 3.51
6052 6394 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
6053 6395 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
6054 6396 1.745087 GAATGCCACGTGTCATCCATT 59.255 47.619 13.12 12.61 0.00 3.16
6055 6397 2.708216 ATGCCACGTGTCATCCATTA 57.292 45.000 15.65 0.00 0.00 1.90
6056 6398 2.022764 TGCCACGTGTCATCCATTAG 57.977 50.000 15.65 0.00 0.00 1.73
6057 6399 1.552792 TGCCACGTGTCATCCATTAGA 59.447 47.619 15.65 0.00 0.00 2.10
6058 6400 2.027653 TGCCACGTGTCATCCATTAGAA 60.028 45.455 15.65 0.00 0.00 2.10
6059 6401 3.006940 GCCACGTGTCATCCATTAGAAA 58.993 45.455 15.65 0.00 0.00 2.52
6060 6402 3.181510 GCCACGTGTCATCCATTAGAAAC 60.182 47.826 15.65 0.00 0.00 2.78
6061 6403 4.253685 CCACGTGTCATCCATTAGAAACT 58.746 43.478 15.65 0.00 0.00 2.66
6062 6404 4.695455 CCACGTGTCATCCATTAGAAACTT 59.305 41.667 15.65 0.00 0.00 2.66
6063 6405 5.181245 CCACGTGTCATCCATTAGAAACTTT 59.819 40.000 15.65 0.00 0.00 2.66
6064 6406 6.293955 CCACGTGTCATCCATTAGAAACTTTT 60.294 38.462 15.65 0.00 0.00 2.27
6065 6407 7.138736 CACGTGTCATCCATTAGAAACTTTTT 58.861 34.615 7.58 0.00 0.00 1.94
6139 6481 7.817418 TGTATGTACTCATATACACAGCTGA 57.183 36.000 23.35 0.00 37.88 4.26
6140 6482 7.875971 TGTATGTACTCATATACACAGCTGAG 58.124 38.462 23.35 16.23 37.88 3.35
6141 6483 5.188327 TGTACTCATATACACAGCTGAGC 57.812 43.478 23.35 0.00 38.94 4.26
6142 6484 4.644685 TGTACTCATATACACAGCTGAGCA 59.355 41.667 23.35 2.90 38.94 4.26
6143 6485 4.743057 ACTCATATACACAGCTGAGCAA 57.257 40.909 23.35 4.86 38.94 3.91
6144 6486 5.287674 ACTCATATACACAGCTGAGCAAT 57.712 39.130 23.35 12.38 38.94 3.56
6145 6487 6.410942 ACTCATATACACAGCTGAGCAATA 57.589 37.500 23.35 14.17 38.94 1.90
6146 6488 6.820335 ACTCATATACACAGCTGAGCAATAA 58.180 36.000 23.35 0.00 38.94 1.40
6147 6489 7.448420 ACTCATATACACAGCTGAGCAATAAT 58.552 34.615 23.35 6.24 38.94 1.28
6148 6490 7.387122 ACTCATATACACAGCTGAGCAATAATG 59.613 37.037 23.35 13.90 38.94 1.90
6149 6491 7.219322 TCATATACACAGCTGAGCAATAATGT 58.781 34.615 23.35 13.90 0.00 2.71
6150 6492 5.998454 ATACACAGCTGAGCAATAATGTC 57.002 39.130 23.35 0.00 0.00 3.06
6151 6493 3.012518 ACACAGCTGAGCAATAATGTCC 58.987 45.455 23.35 0.00 0.00 4.02
6152 6494 3.011818 CACAGCTGAGCAATAATGTCCA 58.988 45.455 23.35 0.00 0.00 4.02
6153 6495 3.064958 CACAGCTGAGCAATAATGTCCAG 59.935 47.826 23.35 0.00 33.89 3.86
6154 6496 3.276857 CAGCTGAGCAATAATGTCCAGT 58.723 45.455 8.42 0.00 33.56 4.00
6155 6497 3.311871 CAGCTGAGCAATAATGTCCAGTC 59.688 47.826 8.42 0.00 33.56 3.51
6156 6498 2.615912 GCTGAGCAATAATGTCCAGTCC 59.384 50.000 0.00 0.00 33.56 3.85
6157 6499 3.877559 CTGAGCAATAATGTCCAGTCCA 58.122 45.455 0.00 0.00 0.00 4.02
6158 6500 4.264253 CTGAGCAATAATGTCCAGTCCAA 58.736 43.478 0.00 0.00 0.00 3.53
6159 6501 4.661222 TGAGCAATAATGTCCAGTCCAAA 58.339 39.130 0.00 0.00 0.00 3.28
6160 6502 5.076182 TGAGCAATAATGTCCAGTCCAAAA 58.924 37.500 0.00 0.00 0.00 2.44
6161 6503 5.716228 TGAGCAATAATGTCCAGTCCAAAAT 59.284 36.000 0.00 0.00 0.00 1.82
6162 6504 6.889177 TGAGCAATAATGTCCAGTCCAAAATA 59.111 34.615 0.00 0.00 0.00 1.40
6163 6505 7.560991 TGAGCAATAATGTCCAGTCCAAAATAT 59.439 33.333 0.00 0.00 0.00 1.28
6164 6506 7.719483 AGCAATAATGTCCAGTCCAAAATATG 58.281 34.615 0.00 0.00 0.00 1.78
6165 6507 7.560991 AGCAATAATGTCCAGTCCAAAATATGA 59.439 33.333 0.00 0.00 0.00 2.15
6166 6508 8.362639 GCAATAATGTCCAGTCCAAAATATGAT 58.637 33.333 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.032017 ACGCCTTCAGGGAGGATAGT 60.032 55.000 0.00 0.00 39.25 2.12
22 23 2.558554 ATTCCCGACGACGCCTTCAG 62.559 60.000 0.64 0.00 38.29 3.02
25 26 2.183555 GATTCCCGACGACGCCTT 59.816 61.111 0.64 0.00 38.29 4.35
48 50 2.569404 GACTTGATCTGGGAGAACTGGT 59.431 50.000 0.00 0.00 0.00 4.00
136 138 1.201647 TCAAGACGACGCCCTAAAGAG 59.798 52.381 0.00 0.00 0.00 2.85
247 249 2.203877 ACTACCCCGACCAAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
258 260 1.406180 GAGAAGAAGAGCCGACTACCC 59.594 57.143 0.00 0.00 0.00 3.69
307 310 3.541516 CGACTTCGACTTCACAACAACAC 60.542 47.826 0.00 0.00 43.02 3.32
355 358 1.007038 GAACCACCAGTCACGCGTA 60.007 57.895 13.44 0.00 0.00 4.42
365 368 1.270625 GGATCACTGAACGAACCACCA 60.271 52.381 0.00 0.00 0.00 4.17
386 389 1.420138 AGGTAAGGTTGGTGTCACAGG 59.580 52.381 5.12 0.00 0.00 4.00
394 398 4.161754 CGAAGGAATCTAGGTAAGGTTGGT 59.838 45.833 0.00 0.00 0.00 3.67
409 413 5.470777 TCAAACGGTAAAATCACGAAGGAAT 59.529 36.000 0.00 0.00 0.00 3.01
416 420 2.723618 CGGCTCAAACGGTAAAATCACG 60.724 50.000 0.00 0.00 0.00 4.35
431 435 4.519437 CAGCGCATCTCCGGCTCA 62.519 66.667 11.47 0.00 34.13 4.26
435 439 1.007964 CTAGACAGCGCATCTCCGG 60.008 63.158 16.54 0.00 0.00 5.14
441 445 3.133003 AGAAACCATACTAGACAGCGCAT 59.867 43.478 11.47 0.00 0.00 4.73
462 466 1.695893 CGCGGCACAACACTCCATAG 61.696 60.000 0.00 0.00 0.00 2.23
663 682 3.253432 GTCCCAAAACAAGAGATCCACAC 59.747 47.826 0.00 0.00 0.00 3.82
725 744 1.003839 CGGGAAACTGCTGCCACTA 60.004 57.895 0.00 0.00 0.00 2.74
904 1049 1.352687 GTTGCTTCCTTCCTCCTCCTT 59.647 52.381 0.00 0.00 0.00 3.36
1145 1290 1.677552 GGTCCAATCCCACACTCGT 59.322 57.895 0.00 0.00 0.00 4.18
1202 1347 0.833287 CAGGTACCCCAGATCACCAG 59.167 60.000 8.74 0.00 33.27 4.00
1306 1462 2.182516 AATCCCAACCAAACCACCAA 57.817 45.000 0.00 0.00 0.00 3.67
1429 1592 7.986085 ACAATCATAGGCTATTACATGTTCC 57.014 36.000 2.30 0.00 0.00 3.62
1487 1650 9.840427 CAAAATAGGATAGCGAAAAGAAAAAGA 57.160 29.630 0.00 0.00 0.00 2.52
1488 1651 9.076596 CCAAAATAGGATAGCGAAAAGAAAAAG 57.923 33.333 0.00 0.00 0.00 2.27
1665 1863 7.391148 AAAAAGTTAGCTTTCAAGAGTGTCA 57.609 32.000 4.94 0.00 43.52 3.58
1739 1937 5.338708 CCACAATAGAGTCACCCTTCATCTT 60.339 44.000 0.00 0.00 0.00 2.40
1758 1956 6.374333 GGTTGCTCTAAGTTGATAATCCACAA 59.626 38.462 0.00 0.00 0.00 3.33
1776 1975 3.339547 TGGCTAAACCAGGTTGCTC 57.660 52.632 5.30 1.38 46.36 4.26
1785 1984 0.690762 TGGGTGAGAGTGGCTAAACC 59.309 55.000 0.00 0.00 39.84 3.27
1787 1986 1.340017 GCATGGGTGAGAGTGGCTAAA 60.340 52.381 0.00 0.00 0.00 1.85
1789 1988 0.909133 TGCATGGGTGAGAGTGGCTA 60.909 55.000 0.00 0.00 0.00 3.93
1799 1998 1.742880 CTGGACGACTGCATGGGTG 60.743 63.158 0.00 0.00 0.00 4.61
1927 2126 9.871238 AATCGTAAGTGACTACAGAACAATTAT 57.129 29.630 0.00 0.00 39.48 1.28
1995 2203 3.250762 TGAACGCACAAGATTTCTCCAAG 59.749 43.478 0.00 0.00 0.00 3.61
2002 2210 3.376859 TGTCAACTGAACGCACAAGATTT 59.623 39.130 0.00 0.00 0.00 2.17
2077 2285 9.409312 CTGAGAACTGCAGATATCTAAGTATTG 57.591 37.037 23.35 2.03 35.39 1.90
2154 2362 5.520376 AAAAAGCTAACAATGCAGTCAGT 57.480 34.783 0.00 0.00 0.00 3.41
2338 2547 5.054477 GCGTAGTGACCAACCATACAATAT 58.946 41.667 0.00 0.00 0.00 1.28
2345 2584 0.973632 TGAGCGTAGTGACCAACCAT 59.026 50.000 0.00 0.00 0.00 3.55
2348 2587 3.119602 TCATACTGAGCGTAGTGACCAAC 60.120 47.826 6.21 0.00 32.19 3.77
2463 2702 5.606348 AGACATCTAAAAGCACTCCTAGG 57.394 43.478 0.82 0.82 0.00 3.02
2490 2734 7.723616 TCAAAGAAGAACCACATTAATTGGAGA 59.276 33.333 18.02 4.83 37.58 3.71
2590 2835 6.920758 GTGCGATATTTTAAACCCATGCAATA 59.079 34.615 0.00 0.00 0.00 1.90
2732 2977 7.782897 TCTATGAAAGGAGTTTCTGAGAAGA 57.217 36.000 0.00 0.00 42.39 2.87
3234 3479 4.928661 AACAGAAATAGATCGCACACAC 57.071 40.909 0.00 0.00 0.00 3.82
3235 3480 5.468409 TCAAAACAGAAATAGATCGCACACA 59.532 36.000 0.00 0.00 0.00 3.72
3236 3481 5.927030 TCAAAACAGAAATAGATCGCACAC 58.073 37.500 0.00 0.00 0.00 3.82
3237 3482 5.390885 GCTCAAAACAGAAATAGATCGCACA 60.391 40.000 0.00 0.00 0.00 4.57
3331 3580 9.630098 CTCGCAAGCATATAATTGGAAATAAAT 57.370 29.630 0.00 0.00 37.18 1.40
3446 3695 4.437820 GCAATTGTCAGAAAACGAACAGTC 59.562 41.667 7.40 0.00 0.00 3.51
3459 3708 5.630680 GGTGATTTGTAAGTGCAATTGTCAG 59.369 40.000 10.14 0.00 0.00 3.51
3489 3738 8.039538 AGACCATAAGTAACTAAACTTGCCTAC 58.960 37.037 0.00 0.00 39.95 3.18
3502 3751 6.153000 TCTGAGAAGACCAGACCATAAGTAAC 59.847 42.308 0.00 0.00 35.89 2.50
3624 3873 2.427506 CCCAACCTACAGAGAAACAGC 58.572 52.381 0.00 0.00 0.00 4.40
3879 4128 8.296713 GGAGCTAATTTGACTTTTTGTATGTGA 58.703 33.333 0.00 0.00 0.00 3.58
3919 4252 7.609760 TGCACTACAGTCCAATATAAACTTG 57.390 36.000 0.00 0.00 0.00 3.16
3924 4257 5.989477 AGCTTGCACTACAGTCCAATATAA 58.011 37.500 0.00 0.00 0.00 0.98
4071 4404 4.909894 GTCAAAAAGACACCTCACACTTC 58.090 43.478 0.00 0.00 46.77 3.01
4216 4549 3.699038 CAGGAAAGTTCAAACTGGACCAA 59.301 43.478 0.00 0.00 39.66 3.67
4308 4641 3.365472 TCAGACTTGCTGCTAGGATACA 58.635 45.455 15.18 0.00 44.52 2.29
4383 4717 3.072622 AGGAAGGTTAGAACAGGACAACC 59.927 47.826 0.00 0.00 40.64 3.77
4462 4796 1.687494 GCCTGAAGTTGCTAGACGCG 61.687 60.000 3.53 3.53 43.27 6.01
4488 4822 5.624159 TCAATGCAGTAAATCTCCCCTATG 58.376 41.667 0.00 0.00 0.00 2.23
4630 4964 4.614284 CGTGCATTCTTTCTTGTCAATGAC 59.386 41.667 6.41 6.41 0.00 3.06
4687 5021 3.895041 ACATTTTTGTCTTTCCCCGTGAT 59.105 39.130 0.00 0.00 0.00 3.06
4818 5155 4.320788 GCAGCATTGATATGAGGTTAAGGC 60.321 45.833 0.00 0.00 33.37 4.35
4831 5168 4.643463 TGTTTCAAATTGGCAGCATTGAT 58.357 34.783 10.96 0.00 32.35 2.57
4846 5183 3.510719 GCACTCTGCTTTGTTGTTTCAA 58.489 40.909 0.00 0.00 40.96 2.69
4879 5216 9.482627 AGATAACATAGTTAGCAACTTAGCATC 57.517 33.333 7.75 6.95 42.81 3.91
4911 5248 3.627395 TCACCGGTTTATCTGCTCAAT 57.373 42.857 2.97 0.00 0.00 2.57
4927 5264 1.539065 CCAGATCCAGCGTACATCACC 60.539 57.143 0.00 0.00 0.00 4.02
5048 5385 8.715191 AGAGCAATCAGTGTATAGAAAGAAAG 57.285 34.615 0.00 0.00 0.00 2.62
5062 5399 2.138320 CAACACACGAGAGCAATCAGT 58.862 47.619 0.00 0.00 0.00 3.41
5075 5412 6.631016 TCATCTATACTTCCAGTCAACACAC 58.369 40.000 0.00 0.00 0.00 3.82
5423 5760 3.709141 ACAACTTTTACCAGGGCATTGTT 59.291 39.130 0.00 0.00 0.00 2.83
5430 5767 4.329392 ACCGAATACAACTTTTACCAGGG 58.671 43.478 0.00 0.00 0.00 4.45
5449 5786 6.533367 TCCAAACAATCTTTTTCTTTCAACCG 59.467 34.615 0.00 0.00 0.00 4.44
5470 5807 3.973305 TGGCCATGACAGAGTATATCCAA 59.027 43.478 0.00 0.00 0.00 3.53
5492 5829 6.808829 TCTCAAAGAACTGCACAAAATTCAT 58.191 32.000 0.00 0.00 0.00 2.57
5569 5906 2.806244 CAGGTACTTTTGTTCAGGACGG 59.194 50.000 0.00 0.00 34.60 4.79
5695 6037 1.906574 CCCTGCTAAGACCCACTTACA 59.093 52.381 0.00 0.00 39.72 2.41
5706 6048 3.935203 CACTAACATGACACCCTGCTAAG 59.065 47.826 0.00 0.00 0.00 2.18
5770 6112 0.455815 GGAGCCTTAATTTGCCCGTG 59.544 55.000 0.00 0.00 0.00 4.94
5771 6113 0.039035 TGGAGCCTTAATTTGCCCGT 59.961 50.000 0.00 0.00 0.00 5.28
5772 6114 1.181786 TTGGAGCCTTAATTTGCCCG 58.818 50.000 0.00 0.00 0.00 6.13
5773 6115 3.694043 TTTTGGAGCCTTAATTTGCCC 57.306 42.857 0.00 0.00 0.00 5.36
5777 6119 9.533253 CGATATGAAATTTTGGAGCCTTAATTT 57.467 29.630 10.03 10.03 34.04 1.82
5779 6121 8.463930 TCGATATGAAATTTTGGAGCCTTAAT 57.536 30.769 0.00 0.00 0.00 1.40
5780 6122 7.873719 TCGATATGAAATTTTGGAGCCTTAA 57.126 32.000 0.00 0.00 0.00 1.85
5781 6123 7.040478 CCATCGATATGAAATTTTGGAGCCTTA 60.040 37.037 0.00 0.00 34.84 2.69
5865 6207 2.083774 CAGAATCCAAACAAGGCGCTA 58.916 47.619 7.64 0.00 0.00 4.26
5882 6224 7.290014 TGGTCTCATATAATTGGTAAGAGCAGA 59.710 37.037 0.00 0.00 35.55 4.26
5903 6245 0.259065 TAGCCCGTGAGATCTGGTCT 59.741 55.000 0.00 0.00 40.81 3.85
5904 6246 0.671251 CTAGCCCGTGAGATCTGGTC 59.329 60.000 0.00 0.00 0.00 4.02
5905 6247 0.033011 ACTAGCCCGTGAGATCTGGT 60.033 55.000 0.00 0.00 0.00 4.00
5906 6248 1.982660 TACTAGCCCGTGAGATCTGG 58.017 55.000 0.00 0.00 0.00 3.86
5907 6249 3.190327 CAGATACTAGCCCGTGAGATCTG 59.810 52.174 0.00 0.00 34.62 2.90
5908 6250 3.073209 TCAGATACTAGCCCGTGAGATCT 59.927 47.826 0.00 0.00 0.00 2.75
5909 6251 3.413327 TCAGATACTAGCCCGTGAGATC 58.587 50.000 0.00 0.00 0.00 2.75
5910 6252 3.073209 TCTCAGATACTAGCCCGTGAGAT 59.927 47.826 10.06 0.00 36.40 2.75
5911 6253 2.438392 TCTCAGATACTAGCCCGTGAGA 59.562 50.000 10.06 10.06 38.43 3.27
5912 6254 2.550606 GTCTCAGATACTAGCCCGTGAG 59.449 54.545 6.47 6.47 34.06 3.51
5913 6255 2.573369 GTCTCAGATACTAGCCCGTGA 58.427 52.381 0.00 0.00 0.00 4.35
5914 6256 1.609555 GGTCTCAGATACTAGCCCGTG 59.390 57.143 0.00 0.00 0.00 4.94
5915 6257 1.479021 GGGTCTCAGATACTAGCCCGT 60.479 57.143 0.00 0.00 0.00 5.28
5916 6258 1.249407 GGGTCTCAGATACTAGCCCG 58.751 60.000 0.00 0.00 0.00 6.13
5917 6259 2.383442 TGGGTCTCAGATACTAGCCC 57.617 55.000 0.00 0.00 35.37 5.19
5918 6260 3.773560 AGATGGGTCTCAGATACTAGCC 58.226 50.000 0.00 0.00 0.00 3.93
5919 6261 4.830046 TCAAGATGGGTCTCAGATACTAGC 59.170 45.833 0.00 0.00 32.15 3.42
5920 6262 6.923012 CATCAAGATGGGTCTCAGATACTAG 58.077 44.000 2.09 0.00 35.24 2.57
5921 6263 6.907853 CATCAAGATGGGTCTCAGATACTA 57.092 41.667 2.09 0.00 35.24 1.82
5922 6264 5.804944 CATCAAGATGGGTCTCAGATACT 57.195 43.478 2.09 0.00 35.24 2.12
5935 6277 3.004419 GCCACATGTCATCCATCAAGATG 59.996 47.826 0.00 3.07 44.21 2.90
5936 6278 3.220110 GCCACATGTCATCCATCAAGAT 58.780 45.455 0.00 0.00 0.00 2.40
5937 6279 2.026075 TGCCACATGTCATCCATCAAGA 60.026 45.455 0.00 0.00 0.00 3.02
5938 6280 2.371306 TGCCACATGTCATCCATCAAG 58.629 47.619 0.00 0.00 0.00 3.02
5939 6281 2.510928 TGCCACATGTCATCCATCAA 57.489 45.000 0.00 0.00 0.00 2.57
5940 6282 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
5941 6283 4.338964 TGTAAATGCCACATGTCATCCATC 59.661 41.667 0.00 0.00 0.00 3.51
5942 6284 4.279982 TGTAAATGCCACATGTCATCCAT 58.720 39.130 0.00 0.00 0.00 3.41
5943 6285 3.694926 TGTAAATGCCACATGTCATCCA 58.305 40.909 0.00 0.00 0.00 3.41
5944 6286 4.717233 TTGTAAATGCCACATGTCATCC 57.283 40.909 0.00 0.00 0.00 3.51
5945 6287 6.254157 GTGATTTGTAAATGCCACATGTCATC 59.746 38.462 0.00 0.00 0.00 2.92
5946 6288 6.101332 GTGATTTGTAAATGCCACATGTCAT 58.899 36.000 0.00 0.00 0.00 3.06
5947 6289 5.010415 TGTGATTTGTAAATGCCACATGTCA 59.990 36.000 0.00 0.00 31.92 3.58
5948 6290 5.468592 TGTGATTTGTAAATGCCACATGTC 58.531 37.500 0.00 0.00 31.92 3.06
5949 6291 5.465532 TGTGATTTGTAAATGCCACATGT 57.534 34.783 0.00 0.00 31.92 3.21
5950 6292 6.619018 GCTTTGTGATTTGTAAATGCCACATG 60.619 38.462 10.67 0.00 34.87 3.21
5951 6293 5.409214 GCTTTGTGATTTGTAAATGCCACAT 59.591 36.000 10.67 0.00 34.87 3.21
5952 6294 4.749099 GCTTTGTGATTTGTAAATGCCACA 59.251 37.500 7.41 7.41 33.78 4.17
5953 6295 4.749099 TGCTTTGTGATTTGTAAATGCCAC 59.251 37.500 0.00 0.00 0.00 5.01
5954 6296 4.953667 TGCTTTGTGATTTGTAAATGCCA 58.046 34.783 0.00 0.00 0.00 4.92
5955 6297 5.870978 AGATGCTTTGTGATTTGTAAATGCC 59.129 36.000 0.00 0.00 0.00 4.40
5956 6298 6.956299 AGATGCTTTGTGATTTGTAAATGC 57.044 33.333 0.00 0.00 0.00 3.56
5957 6299 7.489113 GGGTAGATGCTTTGTGATTTGTAAATG 59.511 37.037 0.00 0.00 0.00 2.32
5958 6300 7.363793 GGGGTAGATGCTTTGTGATTTGTAAAT 60.364 37.037 0.00 0.00 0.00 1.40
5959 6301 6.071616 GGGGTAGATGCTTTGTGATTTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
5960 6302 5.417580 GGGGTAGATGCTTTGTGATTTGTAA 59.582 40.000 0.00 0.00 0.00 2.41
5961 6303 4.947388 GGGGTAGATGCTTTGTGATTTGTA 59.053 41.667 0.00 0.00 0.00 2.41
5962 6304 3.763897 GGGGTAGATGCTTTGTGATTTGT 59.236 43.478 0.00 0.00 0.00 2.83
5963 6305 3.763360 TGGGGTAGATGCTTTGTGATTTG 59.237 43.478 0.00 0.00 0.00 2.32
5964 6306 3.763897 GTGGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
5965 6307 3.356290 GTGGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
5966 6308 2.357154 GGTGGGGTAGATGCTTTGTGAT 60.357 50.000 0.00 0.00 0.00 3.06
5967 6309 1.004277 GGTGGGGTAGATGCTTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
5968 6310 1.463674 GGTGGGGTAGATGCTTTGTG 58.536 55.000 0.00 0.00 0.00 3.33
5969 6311 0.331616 GGGTGGGGTAGATGCTTTGT 59.668 55.000 0.00 0.00 0.00 2.83
5970 6312 0.395724 GGGGTGGGGTAGATGCTTTG 60.396 60.000 0.00 0.00 0.00 2.77
5971 6313 0.552615 AGGGGTGGGGTAGATGCTTT 60.553 55.000 0.00 0.00 0.00 3.51
5972 6314 0.552615 AAGGGGTGGGGTAGATGCTT 60.553 55.000 0.00 0.00 0.00 3.91
5973 6315 0.345502 TAAGGGGTGGGGTAGATGCT 59.654 55.000 0.00 0.00 0.00 3.79
5974 6316 0.472898 GTAAGGGGTGGGGTAGATGC 59.527 60.000 0.00 0.00 0.00 3.91
5975 6317 2.172717 CAAGTAAGGGGTGGGGTAGATG 59.827 54.545 0.00 0.00 0.00 2.90
5976 6318 2.046729 TCAAGTAAGGGGTGGGGTAGAT 59.953 50.000 0.00 0.00 0.00 1.98
5977 6319 1.437945 TCAAGTAAGGGGTGGGGTAGA 59.562 52.381 0.00 0.00 0.00 2.59
5978 6320 1.961133 TCAAGTAAGGGGTGGGGTAG 58.039 55.000 0.00 0.00 0.00 3.18
5979 6321 2.436964 TTCAAGTAAGGGGTGGGGTA 57.563 50.000 0.00 0.00 0.00 3.69
5980 6322 1.536644 TTTCAAGTAAGGGGTGGGGT 58.463 50.000 0.00 0.00 0.00 4.95
5981 6323 2.042433 TGATTTCAAGTAAGGGGTGGGG 59.958 50.000 0.00 0.00 0.00 4.96
5982 6324 3.356290 CTGATTTCAAGTAAGGGGTGGG 58.644 50.000 0.00 0.00 0.00 4.61
5983 6325 3.356290 CCTGATTTCAAGTAAGGGGTGG 58.644 50.000 0.00 0.00 0.00 4.61
5984 6326 3.010138 TCCCTGATTTCAAGTAAGGGGTG 59.990 47.826 2.33 0.00 46.53 4.61
5985 6327 3.265489 TCCCTGATTTCAAGTAAGGGGT 58.735 45.455 2.33 0.00 46.53 4.95
5986 6328 3.372025 CCTCCCTGATTTCAAGTAAGGGG 60.372 52.174 2.33 0.00 46.53 4.79
5988 6330 4.471386 TCTCCTCCCTGATTTCAAGTAAGG 59.529 45.833 0.00 0.00 0.00 2.69
5989 6331 5.423610 TCTCTCCTCCCTGATTTCAAGTAAG 59.576 44.000 0.00 0.00 0.00 2.34
5990 6332 5.342017 TCTCTCCTCCCTGATTTCAAGTAA 58.658 41.667 0.00 0.00 0.00 2.24
5991 6333 4.947883 TCTCTCCTCCCTGATTTCAAGTA 58.052 43.478 0.00 0.00 0.00 2.24
5992 6334 3.796111 TCTCTCCTCCCTGATTTCAAGT 58.204 45.455 0.00 0.00 0.00 3.16
5993 6335 5.370875 AATCTCTCCTCCCTGATTTCAAG 57.629 43.478 0.00 0.00 0.00 3.02
5994 6336 6.205298 TCTAATCTCTCCTCCCTGATTTCAA 58.795 40.000 0.00 0.00 32.33 2.69
5995 6337 5.781827 TCTAATCTCTCCTCCCTGATTTCA 58.218 41.667 0.00 0.00 32.33 2.69
5996 6338 6.700352 CATCTAATCTCTCCTCCCTGATTTC 58.300 44.000 0.00 0.00 32.33 2.17
5997 6339 5.012975 GCATCTAATCTCTCCTCCCTGATTT 59.987 44.000 0.00 0.00 32.33 2.17
5998 6340 4.531732 GCATCTAATCTCTCCTCCCTGATT 59.468 45.833 0.00 0.00 34.16 2.57
5999 6341 4.095946 GCATCTAATCTCTCCTCCCTGAT 58.904 47.826 0.00 0.00 0.00 2.90
6000 6342 3.141838 AGCATCTAATCTCTCCTCCCTGA 59.858 47.826 0.00 0.00 0.00 3.86
6001 6343 3.509442 AGCATCTAATCTCTCCTCCCTG 58.491 50.000 0.00 0.00 0.00 4.45
6002 6344 3.921287 AGCATCTAATCTCTCCTCCCT 57.079 47.619 0.00 0.00 0.00 4.20
6003 6345 4.972751 AAAGCATCTAATCTCTCCTCCC 57.027 45.455 0.00 0.00 0.00 4.30
6004 6346 7.238486 TCATAAAGCATCTAATCTCTCCTCC 57.762 40.000 0.00 0.00 0.00 4.30
6005 6347 9.723601 AAATCATAAAGCATCTAATCTCTCCTC 57.276 33.333 0.00 0.00 0.00 3.71
6015 6357 9.299465 TGGCATTCATAAATCATAAAGCATCTA 57.701 29.630 0.00 0.00 0.00 1.98
6016 6358 8.086522 GTGGCATTCATAAATCATAAAGCATCT 58.913 33.333 0.00 0.00 0.00 2.90
6017 6359 7.061441 CGTGGCATTCATAAATCATAAAGCATC 59.939 37.037 0.00 0.00 0.00 3.91
6018 6360 6.864685 CGTGGCATTCATAAATCATAAAGCAT 59.135 34.615 0.00 0.00 0.00 3.79
6019 6361 6.183360 ACGTGGCATTCATAAATCATAAAGCA 60.183 34.615 0.00 0.00 0.00 3.91
6020 6362 6.142798 CACGTGGCATTCATAAATCATAAAGC 59.857 38.462 7.95 0.00 0.00 3.51
6021 6363 7.195646 ACACGTGGCATTCATAAATCATAAAG 58.804 34.615 21.57 0.00 0.00 1.85
6022 6364 7.094508 ACACGTGGCATTCATAAATCATAAA 57.905 32.000 21.57 0.00 0.00 1.40
6023 6365 6.317391 TGACACGTGGCATTCATAAATCATAA 59.683 34.615 23.03 0.00 0.00 1.90
6024 6366 5.819901 TGACACGTGGCATTCATAAATCATA 59.180 36.000 23.03 0.00 0.00 2.15
6025 6367 4.639755 TGACACGTGGCATTCATAAATCAT 59.360 37.500 23.03 0.00 0.00 2.45
6026 6368 4.006319 TGACACGTGGCATTCATAAATCA 58.994 39.130 23.03 6.48 0.00 2.57
6027 6369 4.614555 TGACACGTGGCATTCATAAATC 57.385 40.909 23.03 3.54 0.00 2.17
6028 6370 4.036734 GGATGACACGTGGCATTCATAAAT 59.963 41.667 36.07 14.34 45.42 1.40
6029 6371 3.376859 GGATGACACGTGGCATTCATAAA 59.623 43.478 36.07 7.37 45.42 1.40
6030 6372 2.942376 GGATGACACGTGGCATTCATAA 59.058 45.455 36.07 8.22 45.42 1.90
6031 6373 2.093235 TGGATGACACGTGGCATTCATA 60.093 45.455 36.64 19.08 43.95 2.15
6032 6374 1.339920 TGGATGACACGTGGCATTCAT 60.340 47.619 36.64 26.22 43.95 2.57
6033 6375 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
6034 6376 1.382522 ATGGATGACACGTGGCATTC 58.617 50.000 36.07 34.16 45.42 2.67
6035 6377 1.838112 AATGGATGACACGTGGCATT 58.162 45.000 36.07 19.83 45.42 3.56
6037 6379 1.552792 TCTAATGGATGACACGTGGCA 59.447 47.619 29.28 29.28 37.54 4.92
6038 6380 2.309528 TCTAATGGATGACACGTGGC 57.690 50.000 21.57 19.24 0.00 5.01
6039 6381 4.253685 AGTTTCTAATGGATGACACGTGG 58.746 43.478 21.57 1.66 0.00 4.94
6040 6382 5.862924 AAGTTTCTAATGGATGACACGTG 57.137 39.130 15.48 15.48 0.00 4.49
6041 6383 6.877611 AAAAGTTTCTAATGGATGACACGT 57.122 33.333 0.00 0.00 0.00 4.49
6113 6455 8.860088 TCAGCTGTGTATATGAGTACATACAAT 58.140 33.333 14.67 0.00 41.03 2.71
6114 6456 8.232913 TCAGCTGTGTATATGAGTACATACAA 57.767 34.615 14.67 0.00 41.03 2.41
6115 6457 7.522236 GCTCAGCTGTGTATATGAGTACATACA 60.522 40.741 14.67 0.00 41.03 2.29
6116 6458 6.804295 GCTCAGCTGTGTATATGAGTACATAC 59.196 42.308 14.67 0.00 41.03 2.39
6117 6459 6.490040 TGCTCAGCTGTGTATATGAGTACATA 59.510 38.462 14.67 0.00 41.00 2.29
6118 6460 5.302823 TGCTCAGCTGTGTATATGAGTACAT 59.697 40.000 14.67 0.00 41.00 2.29
6119 6461 4.644685 TGCTCAGCTGTGTATATGAGTACA 59.355 41.667 14.67 0.00 41.00 2.90
6120 6462 5.188327 TGCTCAGCTGTGTATATGAGTAC 57.812 43.478 14.67 0.00 41.00 2.73
6121 6463 5.852282 TTGCTCAGCTGTGTATATGAGTA 57.148 39.130 14.67 0.00 41.00 2.59
6122 6464 4.743057 TTGCTCAGCTGTGTATATGAGT 57.257 40.909 14.67 0.00 41.00 3.41
6123 6465 7.387122 ACATTATTGCTCAGCTGTGTATATGAG 59.613 37.037 14.67 2.06 41.68 2.90
6124 6466 7.219322 ACATTATTGCTCAGCTGTGTATATGA 58.781 34.615 14.67 5.11 0.00 2.15
6125 6467 7.360691 GGACATTATTGCTCAGCTGTGTATATG 60.361 40.741 14.67 15.31 0.00 1.78
6126 6468 6.652481 GGACATTATTGCTCAGCTGTGTATAT 59.348 38.462 14.67 9.52 0.00 0.86
6127 6469 5.991606 GGACATTATTGCTCAGCTGTGTATA 59.008 40.000 14.67 10.43 0.00 1.47
6128 6470 4.818546 GGACATTATTGCTCAGCTGTGTAT 59.181 41.667 14.67 11.36 0.00 2.29
6129 6471 4.191544 GGACATTATTGCTCAGCTGTGTA 58.808 43.478 14.67 8.19 0.00 2.90
6130 6472 3.012518 GGACATTATTGCTCAGCTGTGT 58.987 45.455 14.67 7.87 0.00 3.72
6131 6473 3.011818 TGGACATTATTGCTCAGCTGTG 58.988 45.455 14.67 12.95 0.00 3.66
6132 6474 3.276857 CTGGACATTATTGCTCAGCTGT 58.723 45.455 14.67 0.00 0.00 4.40
6133 6475 3.276857 ACTGGACATTATTGCTCAGCTG 58.723 45.455 7.63 7.63 32.59 4.24
6134 6476 3.539604 GACTGGACATTATTGCTCAGCT 58.460 45.455 0.00 0.00 32.59 4.24
6135 6477 2.615912 GGACTGGACATTATTGCTCAGC 59.384 50.000 0.00 0.00 32.59 4.26
6136 6478 3.877559 TGGACTGGACATTATTGCTCAG 58.122 45.455 0.00 0.00 34.37 3.35
6137 6479 3.998913 TGGACTGGACATTATTGCTCA 57.001 42.857 0.00 0.00 0.00 4.26
6138 6480 5.643379 TTTTGGACTGGACATTATTGCTC 57.357 39.130 0.00 0.00 0.00 4.26
6139 6481 7.560991 TCATATTTTGGACTGGACATTATTGCT 59.439 33.333 0.00 0.00 0.00 3.91
6140 6482 7.715657 TCATATTTTGGACTGGACATTATTGC 58.284 34.615 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.