Multiple sequence alignment - TraesCS6D01G201600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G201600 chr6D 100.000 2791 0 0 1 2791 283804281 283807071 0.000000e+00 5155.0
1 TraesCS6D01G201600 chr6D 97.193 285 8 0 2507 2791 113910552 113910268 1.500000e-132 483.0
2 TraesCS6D01G201600 chr6A 91.336 1535 69 28 816 2301 404360412 404361931 0.000000e+00 2039.0
3 TraesCS6D01G201600 chr6A 97.426 272 7 0 21 292 404357080 404357351 5.450000e-127 464.0
4 TraesCS6D01G201600 chr6A 90.643 342 24 5 332 670 404357346 404357682 5.480000e-122 448.0
5 TraesCS6D01G201600 chr6A 92.784 97 7 0 670 766 404360303 404360399 1.040000e-29 141.0
6 TraesCS6D01G201600 chr6A 94.444 90 5 0 626 715 137532487 137532398 3.750000e-29 139.0
7 TraesCS6D01G201600 chr6A 94.444 90 5 0 626 715 457381586 457381497 3.750000e-29 139.0
8 TraesCS6D01G201600 chr6B 88.497 1417 65 44 1014 2346 444740285 444741687 0.000000e+00 1624.0
9 TraesCS6D01G201600 chr6B 85.354 198 11 7 85 278 444688541 444688724 3.670000e-44 189.0
10 TraesCS6D01G201600 chr6B 89.855 138 6 1 2341 2478 444741797 444741926 1.330000e-38 171.0
11 TraesCS6D01G201600 chr6B 93.407 91 6 0 625 715 141106401 141106491 4.850000e-28 135.0
12 TraesCS6D01G201600 chr5D 97.000 300 9 0 2492 2791 456571844 456572143 3.210000e-139 505.0
13 TraesCS6D01G201600 chr5D 85.424 295 23 10 1444 1738 33074724 33074450 3.520000e-74 289.0
14 TraesCS6D01G201600 chr7D 97.193 285 8 0 2507 2791 478332616 478332332 1.500000e-132 483.0
15 TraesCS6D01G201600 chr2D 96.842 285 9 0 2507 2791 609657407 609657123 6.990000e-131 477.0
16 TraesCS6D01G201600 chr2D 91.228 285 25 0 2507 2791 131290405 131290121 3.370000e-104 388.0
17 TraesCS6D01G201600 chr2D 89.199 287 27 3 2507 2791 140911247 140911531 3.420000e-94 355.0
18 TraesCS6D01G201600 chr2D 94.565 92 5 0 625 716 154158894 154158803 2.900000e-30 143.0
19 TraesCS6D01G201600 chr1B 95.472 265 10 2 2527 2791 629322688 629322950 3.320000e-114 422.0
20 TraesCS6D01G201600 chr2A 93.310 284 19 0 2508 2791 419186226 419186509 1.200000e-113 420.0
21 TraesCS6D01G201600 chr4D 91.930 285 23 0 2507 2791 43614898 43615182 1.560000e-107 399.0
22 TraesCS6D01G201600 chr4D 94.444 90 5 0 626 715 175088807 175088896 3.750000e-29 139.0
23 TraesCS6D01G201600 chr5A 85.424 295 23 10 1444 1738 21452776 21452502 3.520000e-74 289.0
24 TraesCS6D01G201600 chr5B 83.729 295 28 11 1444 1738 24232811 24232537 7.670000e-66 261.0
25 TraesCS6D01G201600 chr5B 88.136 59 6 1 3 60 469486844 469486902 4.990000e-08 69.4
26 TraesCS6D01G201600 chr3D 94.318 88 5 0 625 712 138076239 138076326 4.850000e-28 135.0
27 TraesCS6D01G201600 chr3A 93.407 91 6 0 625 715 156231983 156232073 4.850000e-28 135.0
28 TraesCS6D01G201600 chr4A 91.667 60 3 2 1 60 49900513 49900456 6.410000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G201600 chr6D 283804281 283807071 2790 False 5155.0 5155 100.00000 1 2791 1 chr6D.!!$F1 2790
1 TraesCS6D01G201600 chr6A 404357080 404361931 4851 False 773.0 2039 93.04725 21 2301 4 chr6A.!!$F1 2280
2 TraesCS6D01G201600 chr6B 444740285 444741926 1641 False 897.5 1624 89.17600 1014 2478 2 chr6B.!!$F3 1464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 563 0.25589 TAGTCTGATTGCTTGGGGGC 59.744 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2547 5398 0.039798 GTTTTCGCCCGGTTTTCCTC 60.04 55.0 0.0 0.0 37.95 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.751990 GTGATTTCATTCTGGCAATGGAATC 59.248 40.000 19.67 19.67 45.97 2.52
30 31 5.909477 GATTTCATTCTGGCAATGGAATCA 58.091 37.500 20.84 0.00 45.47 2.57
87 88 3.454719 TGGATCTTGCCTTCCAATTGA 57.545 42.857 7.12 0.00 39.05 2.57
185 186 3.469899 GCGAGTTGCAACATGAATACA 57.530 42.857 30.11 0.00 45.45 2.29
240 241 9.944663 GTACTGTTCTTTCAATGTGATTTACAA 57.055 29.630 0.00 0.00 43.77 2.41
294 295 9.755064 CTCGTATGTGTTTTCAACTAATTAAGG 57.245 33.333 0.00 0.00 0.00 2.69
295 296 9.275398 TCGTATGTGTTTTCAACTAATTAAGGT 57.725 29.630 0.00 0.00 0.00 3.50
296 297 9.887406 CGTATGTGTTTTCAACTAATTAAGGTT 57.113 29.630 0.00 0.00 0.00 3.50
306 307 9.787435 TTCAACTAATTAAGGTTACACATGACT 57.213 29.630 0.00 0.00 0.00 3.41
307 308 9.431887 TCAACTAATTAAGGTTACACATGACTC 57.568 33.333 0.00 0.00 0.00 3.36
308 309 9.214957 CAACTAATTAAGGTTACACATGACTCA 57.785 33.333 0.00 0.00 0.00 3.41
309 310 9.959721 AACTAATTAAGGTTACACATGACTCAT 57.040 29.630 0.00 0.00 0.00 2.90
310 311 9.601217 ACTAATTAAGGTTACACATGACTCATC 57.399 33.333 0.00 0.00 0.00 2.92
311 312 9.599866 CTAATTAAGGTTACACATGACTCATCA 57.400 33.333 0.00 0.00 39.83 3.07
312 313 8.862325 AATTAAGGTTACACATGACTCATCAA 57.138 30.769 0.00 0.00 38.69 2.57
313 314 8.862325 ATTAAGGTTACACATGACTCATCAAA 57.138 30.769 0.00 0.00 38.69 2.69
314 315 8.684386 TTAAGGTTACACATGACTCATCAAAA 57.316 30.769 0.00 0.00 38.69 2.44
315 316 7.581213 AAGGTTACACATGACTCATCAAAAA 57.419 32.000 0.00 0.00 38.69 1.94
316 317 7.206981 AGGTTACACATGACTCATCAAAAAG 57.793 36.000 0.00 0.00 38.69 2.27
317 318 6.998074 AGGTTACACATGACTCATCAAAAAGA 59.002 34.615 0.00 0.00 38.69 2.52
318 319 7.502226 AGGTTACACATGACTCATCAAAAAGAA 59.498 33.333 0.00 0.00 38.69 2.52
319 320 8.134895 GGTTACACATGACTCATCAAAAAGAAA 58.865 33.333 0.00 0.00 38.69 2.52
320 321 9.683069 GTTACACATGACTCATCAAAAAGAAAT 57.317 29.630 0.00 0.00 38.69 2.17
349 350 5.997746 ACAATATAATGATAAGGCTGCGTGT 59.002 36.000 0.00 0.00 0.00 4.49
362 363 1.391485 CTGCGTGTCTATTCAGTGTGC 59.609 52.381 0.00 0.00 0.00 4.57
375 376 4.236527 TCAGTGTGCTCTCCTCTATACA 57.763 45.455 0.00 0.00 0.00 2.29
381 382 5.010516 GTGTGCTCTCCTCTATACATGTCAT 59.989 44.000 0.00 0.00 0.00 3.06
449 453 3.244976 CCTTTTGCAACATGATTCCGTC 58.755 45.455 0.00 0.00 0.00 4.79
459 463 4.260985 ACATGATTCCGTCAAGTTGCATA 58.739 39.130 0.00 0.00 40.97 3.14
464 468 7.321963 TGATTCCGTCAAGTTGCATAAGTGC 62.322 44.000 0.00 0.00 42.09 4.40
506 510 4.633565 CCACAATAAGAGAGGACTTCTTGC 59.366 45.833 0.00 0.00 37.43 4.01
525 529 5.355071 TCTTGCTTGCATTACAATAGAGTGG 59.645 40.000 0.00 0.00 37.72 4.00
547 551 5.128663 TGGTCGATCCATTTTCATAGTCTGA 59.871 40.000 0.00 0.00 41.93 3.27
550 554 7.307632 GGTCGATCCATTTTCATAGTCTGATTG 60.308 40.741 0.00 0.00 32.87 2.67
559 563 0.255890 TAGTCTGATTGCTTGGGGGC 59.744 55.000 0.00 0.00 0.00 5.80
570 574 1.986882 CTTGGGGGCCATTGATCTAC 58.013 55.000 4.39 0.00 31.53 2.59
577 581 2.158957 GGGCCATTGATCTACGAGTGAA 60.159 50.000 4.39 0.00 0.00 3.18
595 599 4.653341 AGTGAAGAAGGGAGATATGGACAG 59.347 45.833 0.00 0.00 0.00 3.51
598 602 5.541868 TGAAGAAGGGAGATATGGACAGATC 59.458 44.000 0.00 0.00 0.00 2.75
627 631 9.937175 GGAATAGCTTTATTGTTTGTGAGATAC 57.063 33.333 0.00 0.00 0.00 2.24
630 634 7.617041 AGCTTTATTGTTTGTGAGATACTCC 57.383 36.000 0.00 0.00 0.00 3.85
633 637 7.201652 GCTTTATTGTTTGTGAGATACTCCCTC 60.202 40.741 0.00 0.00 0.00 4.30
635 639 2.496070 TGTTTGTGAGATACTCCCTCCG 59.504 50.000 0.00 0.00 0.00 4.63
670 674 7.349412 AGTGTCTCAACTCTAGTACAACTTT 57.651 36.000 0.00 0.00 0.00 2.66
671 675 7.203910 AGTGTCTCAACTCTAGTACAACTTTG 58.796 38.462 0.00 0.00 0.00 2.77
673 677 8.133627 GTGTCTCAACTCTAGTACAACTTTGTA 58.866 37.037 0.00 0.00 42.35 2.41
716 3341 6.570692 TGAGACACTTATTTTAGGACGGATC 58.429 40.000 0.00 0.00 0.00 3.36
719 3344 5.589192 ACACTTATTTTAGGACGGATCTCG 58.411 41.667 0.00 0.00 45.88 4.04
766 3391 6.484364 ACTCACATTTGAAGAACCCATTTT 57.516 33.333 0.00 0.00 0.00 1.82
767 3392 6.888105 ACTCACATTTGAAGAACCCATTTTT 58.112 32.000 0.00 0.00 0.00 1.94
841 3466 5.129485 TGAGAACCCAAAAATTTGTAAGCCA 59.871 36.000 5.27 0.00 36.45 4.75
875 3500 2.235028 TGGCGAATGGAGGGGGAAA 61.235 57.895 0.00 0.00 0.00 3.13
905 3530 0.325933 CAGCCCACAGGAACATGAGA 59.674 55.000 0.00 0.00 33.47 3.27
959 3584 1.767692 GGAAGGGAAGGCAACAGGA 59.232 57.895 0.00 0.00 41.41 3.86
964 3589 1.213296 GGGAAGGCAACAGGAGGATA 58.787 55.000 0.00 0.00 41.41 2.59
1143 3783 1.374252 GAGCGCGGAGAAGAACCAA 60.374 57.895 8.83 0.00 0.00 3.67
1200 3840 2.583441 CCTCAAGGTCGTCTGCCCA 61.583 63.158 0.00 0.00 0.00 5.36
1234 3880 2.448705 GCACGCGCTCTCTTCTTCC 61.449 63.158 5.73 0.00 34.30 3.46
1255 3901 7.298552 TCTTCCTCTTCCTAATCCCTACTATCT 59.701 40.741 0.00 0.00 0.00 1.98
1305 3957 2.433145 CATCCGCATCCGATCCCG 60.433 66.667 0.00 0.00 36.29 5.14
1326 3978 4.021925 GCGCTGTCCTGTTCCCCT 62.022 66.667 0.00 0.00 0.00 4.79
1327 3979 2.750350 CGCTGTCCTGTTCCCCTT 59.250 61.111 0.00 0.00 0.00 3.95
1495 4202 4.152223 CGTGATTGATGCAGTGTCAACTTA 59.848 41.667 3.42 0.00 38.31 2.24
1496 4203 5.163824 CGTGATTGATGCAGTGTCAACTTAT 60.164 40.000 3.42 0.00 38.31 1.73
1497 4204 6.025896 GTGATTGATGCAGTGTCAACTTATG 58.974 40.000 3.42 0.00 38.31 1.90
1498 4205 5.706833 TGATTGATGCAGTGTCAACTTATGT 59.293 36.000 3.42 0.00 38.31 2.29
1499 4206 6.878389 TGATTGATGCAGTGTCAACTTATGTA 59.122 34.615 3.42 0.00 38.31 2.29
1500 4207 6.480524 TTGATGCAGTGTCAACTTATGTAC 57.519 37.500 0.00 0.00 32.98 2.90
1578 4285 5.107182 GCAGTTGATTGATCACTATGGATCG 60.107 44.000 0.00 0.00 45.31 3.69
1760 4468 1.691196 TGTTCCAGGCAAGAACCTTG 58.309 50.000 14.62 2.54 42.41 3.61
1761 4469 1.214175 TGTTCCAGGCAAGAACCTTGA 59.786 47.619 14.62 0.00 42.41 3.02
1785 4493 4.337274 TGATGAGCATGTATTTGCCTTCTG 59.663 41.667 0.00 0.00 43.83 3.02
1790 4498 3.733077 GCATGTATTTGCCTTCTGTGAGC 60.733 47.826 0.00 0.00 36.60 4.26
1799 4508 1.998315 CCTTCTGTGAGCATCTTGTCG 59.002 52.381 0.00 0.00 34.92 4.35
1861 4570 8.723942 TCTTTGGATAAGAGAATGCTAAACTC 57.276 34.615 0.00 0.00 0.00 3.01
1864 4576 7.423844 TGGATAAGAGAATGCTAAACTCTCA 57.576 36.000 0.00 0.00 39.63 3.27
1887 4599 1.660560 ATGGCATTCTCCTGTTGCGC 61.661 55.000 0.00 0.00 37.25 6.09
1924 4636 6.769608 AAGAGCCGAAAAATGAATGTTTTC 57.230 33.333 0.00 0.00 40.19 2.29
1933 4645 7.463469 AAAAATGAATGTTTTCCTCGTTCAC 57.537 32.000 3.27 0.00 41.51 3.18
1938 4660 2.348660 TGTTTTCCTCGTTCACGTGTT 58.651 42.857 16.51 0.00 40.80 3.32
1961 4683 3.450817 TGTGTGTGGTATATACAGCAGCT 59.549 43.478 14.70 0.00 30.51 4.24
2000 4722 6.744112 TCTGGTTATTCGAAACAAAAAGCAT 58.256 32.000 0.00 0.00 0.00 3.79
2118 4851 5.640158 CCCAAATCAGGGTACTACCATAA 57.360 43.478 7.57 0.00 44.24 1.90
2122 4855 7.287061 CCAAATCAGGGTACTACCATAATTGA 58.713 38.462 7.57 3.57 41.02 2.57
2173 4906 4.643463 TCAAAGTACGGTAAATTGCTCCA 58.357 39.130 8.53 0.00 0.00 3.86
2203 4939 1.067706 TCCACGCATTTGAGGCAATTG 60.068 47.619 0.00 0.00 0.00 2.32
2210 4946 5.045215 CGCATTTGAGGCAATTGTATTGAT 58.955 37.500 7.40 0.00 30.43 2.57
2223 4959 4.032960 TGTATTGATTTGCTGTGTCCCT 57.967 40.909 0.00 0.00 0.00 4.20
2239 4975 2.194212 CCTGGAGCTGCATCATGCC 61.194 63.158 8.91 0.00 44.23 4.40
2292 5028 3.375299 GGGTGCTTCACTATGATTGACAC 59.625 47.826 0.00 0.00 34.40 3.67
2392 5243 0.107703 GCAACGACCTGATGGGATGA 60.108 55.000 0.00 0.00 38.76 2.92
2402 5253 4.708421 ACCTGATGGGATGATTTGTTCTTG 59.292 41.667 0.00 0.00 38.76 3.02
2404 5255 5.887598 CCTGATGGGATGATTTGTTCTTGTA 59.112 40.000 0.00 0.00 37.23 2.41
2436 5287 2.356667 CCTTGCCCACCTCCCTTC 59.643 66.667 0.00 0.00 0.00 3.46
2445 5296 2.437359 CCTCCCTTCTGCGCCTTG 60.437 66.667 4.18 0.00 0.00 3.61
2446 5297 2.665000 CTCCCTTCTGCGCCTTGA 59.335 61.111 4.18 0.00 0.00 3.02
2447 5298 1.222936 CTCCCTTCTGCGCCTTGAT 59.777 57.895 4.18 0.00 0.00 2.57
2448 5299 0.465705 CTCCCTTCTGCGCCTTGATA 59.534 55.000 4.18 0.00 0.00 2.15
2449 5300 1.071385 CTCCCTTCTGCGCCTTGATAT 59.929 52.381 4.18 0.00 0.00 1.63
2450 5301 1.202687 TCCCTTCTGCGCCTTGATATG 60.203 52.381 4.18 0.00 0.00 1.78
2451 5302 0.590195 CCTTCTGCGCCTTGATATGC 59.410 55.000 4.18 0.00 0.00 3.14
2452 5303 1.590932 CTTCTGCGCCTTGATATGCT 58.409 50.000 4.18 0.00 0.00 3.79
2462 5313 3.382546 GCCTTGATATGCTTTGTGATGGT 59.617 43.478 0.00 0.00 0.00 3.55
2478 5329 0.181114 TGGTCTCAGCAACACAAGCT 59.819 50.000 0.00 0.00 44.62 3.74
2479 5330 1.416030 TGGTCTCAGCAACACAAGCTA 59.584 47.619 0.00 0.00 41.14 3.32
2480 5331 1.801178 GGTCTCAGCAACACAAGCTAC 59.199 52.381 0.00 0.00 41.14 3.58
2481 5332 2.483876 GTCTCAGCAACACAAGCTACA 58.516 47.619 0.00 0.00 41.14 2.74
2482 5333 2.478134 GTCTCAGCAACACAAGCTACAG 59.522 50.000 0.00 0.00 41.14 2.74
2483 5334 2.103094 TCTCAGCAACACAAGCTACAGT 59.897 45.455 0.00 0.00 41.14 3.55
2484 5335 3.320826 TCTCAGCAACACAAGCTACAGTA 59.679 43.478 0.00 0.00 41.14 2.74
2485 5336 3.390135 TCAGCAACACAAGCTACAGTAC 58.610 45.455 0.00 0.00 41.14 2.73
2486 5337 3.069586 TCAGCAACACAAGCTACAGTACT 59.930 43.478 0.00 0.00 41.14 2.73
2487 5338 3.185188 CAGCAACACAAGCTACAGTACTG 59.815 47.826 21.44 21.44 41.14 2.74
2488 5339 3.131396 GCAACACAAGCTACAGTACTGT 58.869 45.455 30.13 30.13 46.87 3.55
2489 5340 3.560068 GCAACACAAGCTACAGTACTGTT 59.440 43.478 32.15 13.27 41.83 3.16
2490 5341 4.035208 GCAACACAAGCTACAGTACTGTTT 59.965 41.667 32.15 18.43 41.83 2.83
2491 5342 5.448632 GCAACACAAGCTACAGTACTGTTTT 60.449 40.000 32.15 20.49 41.83 2.43
2492 5343 6.551736 CAACACAAGCTACAGTACTGTTTTT 58.448 36.000 32.15 20.17 41.83 1.94
2525 5376 9.840427 GAAACGGATTTTCATTGATTAAGAAGA 57.160 29.630 0.00 0.00 42.95 2.87
2527 5378 9.846248 AACGGATTTTCATTGATTAAGAAGAAG 57.154 29.630 0.00 0.00 0.00 2.85
2528 5379 9.231297 ACGGATTTTCATTGATTAAGAAGAAGA 57.769 29.630 0.00 0.00 0.00 2.87
2529 5380 9.713740 CGGATTTTCATTGATTAAGAAGAAGAG 57.286 33.333 0.00 0.00 0.00 2.85
2535 5386 8.659925 TCATTGATTAAGAAGAAGAGAGATGC 57.340 34.615 0.00 0.00 0.00 3.91
2536 5387 7.714377 TCATTGATTAAGAAGAAGAGAGATGCC 59.286 37.037 0.00 0.00 0.00 4.40
2537 5388 6.805016 TGATTAAGAAGAAGAGAGATGCCT 57.195 37.500 0.00 0.00 0.00 4.75
2538 5389 6.580788 TGATTAAGAAGAAGAGAGATGCCTG 58.419 40.000 0.00 0.00 0.00 4.85
2539 5390 3.910568 AAGAAGAAGAGAGATGCCTGG 57.089 47.619 0.00 0.00 0.00 4.45
2540 5391 2.831565 AGAAGAAGAGAGATGCCTGGT 58.168 47.619 0.00 0.00 0.00 4.00
2541 5392 3.180507 AGAAGAAGAGAGATGCCTGGTT 58.819 45.455 0.00 0.00 0.00 3.67
2542 5393 4.357325 AGAAGAAGAGAGATGCCTGGTTA 58.643 43.478 0.00 0.00 0.00 2.85
2543 5394 4.780021 AGAAGAAGAGAGATGCCTGGTTAA 59.220 41.667 0.00 0.00 0.00 2.01
2544 5395 5.428131 AGAAGAAGAGAGATGCCTGGTTAAT 59.572 40.000 0.00 0.00 0.00 1.40
2545 5396 5.707066 AGAAGAGAGATGCCTGGTTAATT 57.293 39.130 0.00 0.00 0.00 1.40
2546 5397 6.814954 AGAAGAGAGATGCCTGGTTAATTA 57.185 37.500 0.00 0.00 0.00 1.40
2547 5398 6.825610 AGAAGAGAGATGCCTGGTTAATTAG 58.174 40.000 0.00 0.00 0.00 1.73
2548 5399 6.613271 AGAAGAGAGATGCCTGGTTAATTAGA 59.387 38.462 0.00 0.00 0.00 2.10
2549 5400 6.418057 AGAGAGATGCCTGGTTAATTAGAG 57.582 41.667 0.00 0.00 0.00 2.43
2550 5401 5.306678 AGAGAGATGCCTGGTTAATTAGAGG 59.693 44.000 0.00 3.84 0.00 3.69
2551 5402 5.219739 AGAGATGCCTGGTTAATTAGAGGA 58.780 41.667 10.14 0.00 0.00 3.71
2552 5403 5.667626 AGAGATGCCTGGTTAATTAGAGGAA 59.332 40.000 10.14 2.16 0.00 3.36
2553 5404 6.158695 AGAGATGCCTGGTTAATTAGAGGAAA 59.841 38.462 10.14 0.91 0.00 3.13
2554 5405 6.731467 AGATGCCTGGTTAATTAGAGGAAAA 58.269 36.000 10.14 0.00 0.00 2.29
2555 5406 6.603599 AGATGCCTGGTTAATTAGAGGAAAAC 59.396 38.462 10.14 0.00 0.00 2.43
2556 5407 5.014202 TGCCTGGTTAATTAGAGGAAAACC 58.986 41.667 10.14 4.74 40.03 3.27
2557 5408 4.095932 GCCTGGTTAATTAGAGGAAAACCG 59.904 45.833 10.14 2.08 42.03 4.44
2558 5409 4.638865 CCTGGTTAATTAGAGGAAAACCGG 59.361 45.833 0.00 0.00 43.33 5.28
2559 5410 4.591929 TGGTTAATTAGAGGAAAACCGGG 58.408 43.478 6.32 0.00 42.03 5.73
2560 5411 3.379372 GGTTAATTAGAGGAAAACCGGGC 59.621 47.826 6.32 0.00 31.09 6.13
2561 5412 1.746470 AATTAGAGGAAAACCGGGCG 58.254 50.000 6.32 0.00 0.00 6.13
2562 5413 0.906775 ATTAGAGGAAAACCGGGCGA 59.093 50.000 6.32 0.00 0.00 5.54
2563 5414 0.686224 TTAGAGGAAAACCGGGCGAA 59.314 50.000 6.32 0.00 0.00 4.70
2564 5415 0.686224 TAGAGGAAAACCGGGCGAAA 59.314 50.000 6.32 0.00 0.00 3.46
2565 5416 0.179012 AGAGGAAAACCGGGCGAAAA 60.179 50.000 6.32 0.00 0.00 2.29
2566 5417 0.039798 GAGGAAAACCGGGCGAAAAC 60.040 55.000 6.32 0.00 0.00 2.43
2567 5418 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
2568 5419 1.734748 GAAAACCGGGCGAAAACCA 59.265 52.632 6.32 0.00 0.00 3.67
2569 5420 0.102663 GAAAACCGGGCGAAAACCAA 59.897 50.000 6.32 0.00 0.00 3.67
2570 5421 0.103390 AAAACCGGGCGAAAACCAAG 59.897 50.000 6.32 0.00 0.00 3.61
2571 5422 0.752376 AAACCGGGCGAAAACCAAGA 60.752 50.000 6.32 0.00 0.00 3.02
2572 5423 0.538746 AACCGGGCGAAAACCAAGAT 60.539 50.000 6.32 0.00 0.00 2.40
2573 5424 0.538746 ACCGGGCGAAAACCAAGATT 60.539 50.000 6.32 0.00 0.00 2.40
2574 5425 1.271488 ACCGGGCGAAAACCAAGATTA 60.271 47.619 6.32 0.00 0.00 1.75
2575 5426 1.131693 CCGGGCGAAAACCAAGATTAC 59.868 52.381 0.00 0.00 0.00 1.89
2576 5427 1.807742 CGGGCGAAAACCAAGATTACA 59.192 47.619 0.00 0.00 0.00 2.41
2577 5428 2.226912 CGGGCGAAAACCAAGATTACAA 59.773 45.455 0.00 0.00 0.00 2.41
2578 5429 3.304794 CGGGCGAAAACCAAGATTACAAA 60.305 43.478 0.00 0.00 0.00 2.83
2579 5430 3.985279 GGGCGAAAACCAAGATTACAAAC 59.015 43.478 0.00 0.00 0.00 2.93
2580 5431 3.985279 GGCGAAAACCAAGATTACAAACC 59.015 43.478 0.00 0.00 0.00 3.27
2581 5432 3.985279 GCGAAAACCAAGATTACAAACCC 59.015 43.478 0.00 0.00 0.00 4.11
2582 5433 4.552355 CGAAAACCAAGATTACAAACCCC 58.448 43.478 0.00 0.00 0.00 4.95
2583 5434 4.038162 CGAAAACCAAGATTACAAACCCCA 59.962 41.667 0.00 0.00 0.00 4.96
2584 5435 4.948341 AAACCAAGATTACAAACCCCAC 57.052 40.909 0.00 0.00 0.00 4.61
2585 5436 3.603965 ACCAAGATTACAAACCCCACA 57.396 42.857 0.00 0.00 0.00 4.17
2586 5437 4.126520 ACCAAGATTACAAACCCCACAT 57.873 40.909 0.00 0.00 0.00 3.21
2587 5438 3.831911 ACCAAGATTACAAACCCCACATG 59.168 43.478 0.00 0.00 0.00 3.21
2588 5439 3.195396 CCAAGATTACAAACCCCACATGG 59.805 47.826 0.00 0.00 0.00 3.66
2598 5449 3.199551 CCACATGGGGCATTCGTG 58.800 61.111 0.00 0.00 0.00 4.35
2599 5450 2.417257 CCACATGGGGCATTCGTGG 61.417 63.158 0.00 0.00 41.06 4.94
2600 5451 1.378382 CACATGGGGCATTCGTGGA 60.378 57.895 0.00 0.00 0.00 4.02
2601 5452 1.378514 ACATGGGGCATTCGTGGAC 60.379 57.895 0.00 0.00 0.00 4.02
2602 5453 2.124736 ATGGGGCATTCGTGGACG 60.125 61.111 0.00 0.00 41.45 4.79
2611 5462 3.228017 TCGTGGACGACTTGGCCA 61.228 61.111 0.00 0.00 44.22 5.36
2612 5463 3.041940 CGTGGACGACTTGGCCAC 61.042 66.667 3.88 11.13 46.60 5.01
2614 5465 2.911928 TGGACGACTTGGCCACAA 59.088 55.556 3.88 0.00 34.87 3.33
2615 5466 1.224870 TGGACGACTTGGCCACAAA 59.775 52.632 3.88 0.00 35.89 2.83
2616 5467 1.098712 TGGACGACTTGGCCACAAAC 61.099 55.000 3.88 0.00 35.89 2.93
2617 5468 1.278637 GACGACTTGGCCACAAACG 59.721 57.895 3.88 12.12 40.06 3.60
2618 5469 2.051345 CGACTTGGCCACAAACGC 60.051 61.111 3.88 0.00 35.89 4.84
2624 5475 2.496817 GGCCACAAACGCCAAACA 59.503 55.556 0.00 0.00 46.27 2.83
2625 5476 1.591327 GGCCACAAACGCCAAACAG 60.591 57.895 0.00 0.00 46.27 3.16
2626 5477 1.140804 GCCACAAACGCCAAACAGT 59.859 52.632 0.00 0.00 0.00 3.55
2627 5478 0.869880 GCCACAAACGCCAAACAGTC 60.870 55.000 0.00 0.00 0.00 3.51
2628 5479 0.591236 CCACAAACGCCAAACAGTCG 60.591 55.000 0.00 0.00 0.00 4.18
2629 5480 0.375454 CACAAACGCCAAACAGTCGA 59.625 50.000 0.00 0.00 0.00 4.20
2630 5481 0.375803 ACAAACGCCAAACAGTCGAC 59.624 50.000 7.70 7.70 0.00 4.20
2631 5482 0.316689 CAAACGCCAAACAGTCGACC 60.317 55.000 13.01 0.00 0.00 4.79
2632 5483 0.745128 AAACGCCAAACAGTCGACCA 60.745 50.000 13.01 0.00 0.00 4.02
2633 5484 0.745128 AACGCCAAACAGTCGACCAA 60.745 50.000 13.01 0.00 0.00 3.67
2634 5485 0.745128 ACGCCAAACAGTCGACCAAA 60.745 50.000 13.01 0.00 0.00 3.28
2635 5486 0.041312 CGCCAAACAGTCGACCAAAG 60.041 55.000 13.01 2.53 0.00 2.77
2636 5487 0.317854 GCCAAACAGTCGACCAAAGC 60.318 55.000 13.01 4.53 0.00 3.51
2637 5488 0.041312 CCAAACAGTCGACCAAAGCG 60.041 55.000 13.01 0.00 0.00 4.68
2638 5489 0.655733 CAAACAGTCGACCAAAGCGT 59.344 50.000 13.01 0.00 0.00 5.07
2639 5490 0.935196 AAACAGTCGACCAAAGCGTC 59.065 50.000 13.01 0.00 0.00 5.19
2646 5497 2.822306 GACCAAAGCGTCGATGACA 58.178 52.632 9.31 0.00 32.09 3.58
2647 5498 0.716108 GACCAAAGCGTCGATGACAG 59.284 55.000 9.31 0.00 32.09 3.51
2648 5499 0.670546 ACCAAAGCGTCGATGACAGG 60.671 55.000 9.31 6.56 32.09 4.00
2649 5500 0.389817 CCAAAGCGTCGATGACAGGA 60.390 55.000 9.31 0.00 32.09 3.86
2650 5501 0.716108 CAAAGCGTCGATGACAGGAC 59.284 55.000 9.31 0.48 32.09 3.85
2651 5502 0.317160 AAAGCGTCGATGACAGGACA 59.683 50.000 9.31 0.00 32.74 4.02
2652 5503 0.109086 AAGCGTCGATGACAGGACAG 60.109 55.000 9.31 4.49 32.74 3.51
2653 5504 2.161486 GCGTCGATGACAGGACAGC 61.161 63.158 9.31 9.15 32.74 4.40
2654 5505 1.508545 CGTCGATGACAGGACAGCT 59.491 57.895 0.00 0.00 32.74 4.24
2655 5506 0.524392 CGTCGATGACAGGACAGCTC 60.524 60.000 0.00 0.00 32.74 4.09
2656 5507 0.179124 GTCGATGACAGGACAGCTCC 60.179 60.000 0.00 0.00 36.71 4.70
2657 5508 1.226802 CGATGACAGGACAGCTCCG 60.227 63.158 0.00 0.00 42.22 4.63
2658 5509 1.657751 CGATGACAGGACAGCTCCGA 61.658 60.000 0.00 0.00 42.22 4.55
2659 5510 0.749649 GATGACAGGACAGCTCCGAT 59.250 55.000 0.00 0.00 42.22 4.18
2660 5511 1.137872 GATGACAGGACAGCTCCGATT 59.862 52.381 0.00 0.00 42.22 3.34
2661 5512 0.976641 TGACAGGACAGCTCCGATTT 59.023 50.000 0.00 0.00 42.22 2.17
2662 5513 1.347707 TGACAGGACAGCTCCGATTTT 59.652 47.619 0.00 0.00 42.22 1.82
2663 5514 1.734465 GACAGGACAGCTCCGATTTTG 59.266 52.381 0.00 0.00 42.22 2.44
2664 5515 0.449388 CAGGACAGCTCCGATTTTGC 59.551 55.000 0.00 0.00 42.22 3.68
2665 5516 0.326264 AGGACAGCTCCGATTTTGCT 59.674 50.000 0.00 0.00 42.22 3.91
2669 5520 2.460330 AGCTCCGATTTTGCTGACG 58.540 52.632 0.00 0.00 35.54 4.35
2670 5521 0.037326 AGCTCCGATTTTGCTGACGA 60.037 50.000 0.00 0.00 35.54 4.20
2671 5522 0.371645 GCTCCGATTTTGCTGACGAG 59.628 55.000 0.00 0.00 0.00 4.18
2672 5523 1.714794 CTCCGATTTTGCTGACGAGT 58.285 50.000 0.00 0.00 0.00 4.18
2673 5524 2.069273 CTCCGATTTTGCTGACGAGTT 58.931 47.619 0.00 0.00 0.00 3.01
2674 5525 2.480419 CTCCGATTTTGCTGACGAGTTT 59.520 45.455 0.00 0.00 0.00 2.66
2675 5526 2.478894 TCCGATTTTGCTGACGAGTTTC 59.521 45.455 0.00 0.00 0.00 2.78
2676 5527 2.223144 CCGATTTTGCTGACGAGTTTCA 59.777 45.455 0.00 0.00 0.00 2.69
2677 5528 3.218398 CGATTTTGCTGACGAGTTTCAC 58.782 45.455 0.00 0.00 0.00 3.18
2678 5529 3.303066 CGATTTTGCTGACGAGTTTCACA 60.303 43.478 0.00 0.00 0.00 3.58
2679 5530 3.673746 TTTTGCTGACGAGTTTCACAG 57.326 42.857 0.00 0.00 0.00 3.66
2680 5531 1.581934 TTGCTGACGAGTTTCACAGG 58.418 50.000 0.00 0.00 0.00 4.00
2681 5532 0.750249 TGCTGACGAGTTTCACAGGA 59.250 50.000 0.00 0.00 0.00 3.86
2682 5533 1.269778 TGCTGACGAGTTTCACAGGAG 60.270 52.381 0.00 0.00 0.00 3.69
2683 5534 1.000163 GCTGACGAGTTTCACAGGAGA 60.000 52.381 0.00 0.00 0.00 3.71
2684 5535 2.545952 GCTGACGAGTTTCACAGGAGAA 60.546 50.000 0.00 0.00 0.00 2.87
2685 5536 3.717707 CTGACGAGTTTCACAGGAGAAA 58.282 45.455 0.00 0.00 35.28 2.52
2686 5537 3.717707 TGACGAGTTTCACAGGAGAAAG 58.282 45.455 0.00 0.00 38.11 2.62
2687 5538 3.132289 TGACGAGTTTCACAGGAGAAAGT 59.868 43.478 0.00 0.00 42.28 2.66
2688 5539 4.120589 GACGAGTTTCACAGGAGAAAGTT 58.879 43.478 0.00 0.00 40.31 2.66
2689 5540 3.871594 ACGAGTTTCACAGGAGAAAGTTG 59.128 43.478 10.75 10.75 43.39 3.16
2690 5541 3.303395 CGAGTTTCACAGGAGAAAGTTGC 60.303 47.826 0.00 0.00 40.31 4.17
2691 5542 3.620488 AGTTTCACAGGAGAAAGTTGCA 58.380 40.909 0.00 0.00 37.79 4.08
2692 5543 4.016444 AGTTTCACAGGAGAAAGTTGCAA 58.984 39.130 0.00 0.00 37.79 4.08
2693 5544 4.096984 AGTTTCACAGGAGAAAGTTGCAAG 59.903 41.667 0.00 0.00 37.79 4.01
2694 5545 3.558931 TCACAGGAGAAAGTTGCAAGA 57.441 42.857 0.00 0.00 0.00 3.02
2695 5546 4.090761 TCACAGGAGAAAGTTGCAAGAT 57.909 40.909 0.00 0.00 0.00 2.40
2696 5547 4.464008 TCACAGGAGAAAGTTGCAAGATT 58.536 39.130 0.00 0.00 0.00 2.40
2697 5548 4.516698 TCACAGGAGAAAGTTGCAAGATTC 59.483 41.667 13.67 13.67 0.00 2.52
2698 5549 3.499918 ACAGGAGAAAGTTGCAAGATTCG 59.500 43.478 14.96 6.78 0.00 3.34
2699 5550 2.485814 AGGAGAAAGTTGCAAGATTCGC 59.514 45.455 15.27 15.27 0.00 4.70
2700 5551 2.226437 GGAGAAAGTTGCAAGATTCGCA 59.774 45.455 21.28 0.00 37.68 5.10
2701 5552 3.119708 GGAGAAAGTTGCAAGATTCGCAT 60.120 43.478 21.28 6.99 39.58 4.73
2702 5553 4.088823 AGAAAGTTGCAAGATTCGCATC 57.911 40.909 14.96 0.00 39.58 3.91
2703 5554 2.532531 AAGTTGCAAGATTCGCATCG 57.467 45.000 0.00 0.00 39.58 3.84
2704 5555 1.725641 AGTTGCAAGATTCGCATCGA 58.274 45.000 0.00 0.00 39.58 3.59
2705 5556 1.394917 AGTTGCAAGATTCGCATCGAC 59.605 47.619 0.00 0.00 39.58 4.20
2706 5557 0.726827 TTGCAAGATTCGCATCGACC 59.273 50.000 0.00 0.00 39.58 4.79
2707 5558 0.108186 TGCAAGATTCGCATCGACCT 60.108 50.000 0.00 0.00 34.89 3.85
2708 5559 1.136110 TGCAAGATTCGCATCGACCTA 59.864 47.619 0.00 0.00 34.89 3.08
2709 5560 1.789464 GCAAGATTCGCATCGACCTAG 59.211 52.381 0.00 0.00 34.89 3.02
2710 5561 2.799917 GCAAGATTCGCATCGACCTAGT 60.800 50.000 0.00 0.00 34.89 2.57
2711 5562 3.046390 CAAGATTCGCATCGACCTAGTC 58.954 50.000 0.00 0.00 34.89 2.59
2712 5563 1.609555 AGATTCGCATCGACCTAGTCC 59.390 52.381 0.00 0.00 34.89 3.85
2713 5564 1.337071 GATTCGCATCGACCTAGTCCA 59.663 52.381 0.00 0.00 34.89 4.02
2714 5565 1.179152 TTCGCATCGACCTAGTCCAA 58.821 50.000 0.00 0.00 34.89 3.53
2715 5566 0.454600 TCGCATCGACCTAGTCCAAC 59.545 55.000 0.00 0.00 0.00 3.77
2716 5567 0.866061 CGCATCGACCTAGTCCAACG 60.866 60.000 0.00 0.00 0.00 4.10
2717 5568 1.146358 GCATCGACCTAGTCCAACGC 61.146 60.000 0.00 0.00 0.00 4.84
2718 5569 0.172578 CATCGACCTAGTCCAACGCA 59.827 55.000 0.00 0.00 0.00 5.24
2719 5570 0.892755 ATCGACCTAGTCCAACGCAA 59.107 50.000 0.00 0.00 0.00 4.85
2720 5571 0.038892 TCGACCTAGTCCAACGCAAC 60.039 55.000 0.00 0.00 0.00 4.17
2721 5572 0.319211 CGACCTAGTCCAACGCAACA 60.319 55.000 0.00 0.00 0.00 3.33
2722 5573 1.671850 CGACCTAGTCCAACGCAACAT 60.672 52.381 0.00 0.00 0.00 2.71
2723 5574 2.000447 GACCTAGTCCAACGCAACATC 59.000 52.381 0.00 0.00 0.00 3.06
2724 5575 1.338769 ACCTAGTCCAACGCAACATCC 60.339 52.381 0.00 0.00 0.00 3.51
2725 5576 0.999406 CTAGTCCAACGCAACATCCG 59.001 55.000 0.00 0.00 0.00 4.18
2726 5577 0.390603 TAGTCCAACGCAACATCCGG 60.391 55.000 0.00 0.00 0.00 5.14
2727 5578 1.669760 GTCCAACGCAACATCCGGA 60.670 57.895 6.61 6.61 0.00 5.14
2728 5579 1.375396 TCCAACGCAACATCCGGAG 60.375 57.895 11.34 4.72 0.00 4.63
2729 5580 1.375396 CCAACGCAACATCCGGAGA 60.375 57.895 11.34 0.00 0.00 3.71
2730 5581 1.361668 CCAACGCAACATCCGGAGAG 61.362 60.000 11.34 7.83 0.00 3.20
2731 5582 1.741770 AACGCAACATCCGGAGAGC 60.742 57.895 11.34 10.15 0.00 4.09
2732 5583 2.125552 CGCAACATCCGGAGAGCA 60.126 61.111 11.34 0.00 0.00 4.26
2733 5584 2.456119 CGCAACATCCGGAGAGCAC 61.456 63.158 11.34 0.00 0.00 4.40
2734 5585 2.109126 GCAACATCCGGAGAGCACC 61.109 63.158 11.34 0.00 0.00 5.01
2741 5592 3.374402 CGGAGAGCACCGTCCACT 61.374 66.667 8.46 0.00 46.70 4.00
2742 5593 2.262915 GGAGAGCACCGTCCACTG 59.737 66.667 0.00 0.00 32.55 3.66
2743 5594 2.276116 GGAGAGCACCGTCCACTGA 61.276 63.158 0.00 0.00 32.55 3.41
2744 5595 1.666011 GAGAGCACCGTCCACTGAA 59.334 57.895 0.00 0.00 0.00 3.02
2745 5596 0.033504 GAGAGCACCGTCCACTGAAA 59.966 55.000 0.00 0.00 0.00 2.69
2746 5597 0.468226 AGAGCACCGTCCACTGAAAA 59.532 50.000 0.00 0.00 0.00 2.29
2747 5598 0.586802 GAGCACCGTCCACTGAAAAC 59.413 55.000 0.00 0.00 0.00 2.43
2748 5599 0.818040 AGCACCGTCCACTGAAAACC 60.818 55.000 0.00 0.00 0.00 3.27
2749 5600 1.938861 CACCGTCCACTGAAAACCG 59.061 57.895 0.00 0.00 0.00 4.44
2750 5601 1.890510 ACCGTCCACTGAAAACCGC 60.891 57.895 0.00 0.00 0.00 5.68
2751 5602 2.613506 CCGTCCACTGAAAACCGCC 61.614 63.158 0.00 0.00 0.00 6.13
2752 5603 2.613506 CGTCCACTGAAAACCGCCC 61.614 63.158 0.00 0.00 0.00 6.13
2753 5604 1.228154 GTCCACTGAAAACCGCCCT 60.228 57.895 0.00 0.00 0.00 5.19
2754 5605 1.072505 TCCACTGAAAACCGCCCTC 59.927 57.895 0.00 0.00 0.00 4.30
2755 5606 1.228124 CCACTGAAAACCGCCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
2756 5607 0.609131 CCACTGAAAACCGCCCTCAT 60.609 55.000 0.00 0.00 0.00 2.90
2757 5608 0.523072 CACTGAAAACCGCCCTCATG 59.477 55.000 0.00 0.00 0.00 3.07
2758 5609 0.609131 ACTGAAAACCGCCCTCATGG 60.609 55.000 0.00 0.00 37.09 3.66
2759 5610 0.322456 CTGAAAACCGCCCTCATGGA 60.322 55.000 0.00 0.00 35.39 3.41
2760 5611 0.322456 TGAAAACCGCCCTCATGGAG 60.322 55.000 0.00 0.00 35.39 3.86
2761 5612 0.322546 GAAAACCGCCCTCATGGAGT 60.323 55.000 0.00 0.00 35.39 3.85
2762 5613 0.322546 AAAACCGCCCTCATGGAGTC 60.323 55.000 0.00 0.00 35.39 3.36
2763 5614 1.488705 AAACCGCCCTCATGGAGTCA 61.489 55.000 0.00 0.00 35.39 3.41
2764 5615 1.274703 AACCGCCCTCATGGAGTCAT 61.275 55.000 0.00 0.00 35.39 3.06
2765 5616 1.070445 CCGCCCTCATGGAGTCATC 59.930 63.158 0.00 0.00 35.39 2.92
2766 5617 1.689243 CCGCCCTCATGGAGTCATCA 61.689 60.000 0.00 0.00 35.39 3.07
2767 5618 0.395686 CGCCCTCATGGAGTCATCAT 59.604 55.000 0.00 0.00 35.39 2.45
2768 5619 1.202734 CGCCCTCATGGAGTCATCATT 60.203 52.381 0.00 0.00 35.39 2.57
2769 5620 2.228059 GCCCTCATGGAGTCATCATTG 58.772 52.381 0.00 0.00 35.39 2.82
2770 5621 2.228059 CCCTCATGGAGTCATCATTGC 58.772 52.381 0.00 0.00 35.39 3.56
2771 5622 2.228059 CCTCATGGAGTCATCATTGCC 58.772 52.381 0.00 0.00 34.57 4.52
2772 5623 1.871676 CTCATGGAGTCATCATTGCCG 59.128 52.381 0.00 0.00 0.00 5.69
2773 5624 0.309922 CATGGAGTCATCATTGCCGC 59.690 55.000 0.00 0.00 0.00 6.53
2774 5625 0.107066 ATGGAGTCATCATTGCCGCA 60.107 50.000 0.00 0.00 0.00 5.69
2775 5626 0.745486 TGGAGTCATCATTGCCGCAG 60.745 55.000 0.00 0.00 0.00 5.18
2776 5627 0.745845 GGAGTCATCATTGCCGCAGT 60.746 55.000 0.00 0.00 0.00 4.40
2777 5628 0.376152 GAGTCATCATTGCCGCAGTG 59.624 55.000 9.51 9.51 0.00 3.66
2778 5629 1.028330 AGTCATCATTGCCGCAGTGG 61.028 55.000 15.13 0.00 42.50 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.406065 CCATTGCCAGAATGAAATCACATACA 60.406 38.462 0.00 0.00 39.69 2.29
1 2 5.981315 CCATTGCCAGAATGAAATCACATAC 59.019 40.000 0.00 0.00 39.69 2.39
2 3 5.892686 TCCATTGCCAGAATGAAATCACATA 59.107 36.000 0.00 0.00 39.69 2.29
3 4 4.712829 TCCATTGCCAGAATGAAATCACAT 59.287 37.500 0.00 0.00 39.69 3.21
4 5 4.087907 TCCATTGCCAGAATGAAATCACA 58.912 39.130 0.00 0.00 39.69 3.58
5 6 4.724074 TCCATTGCCAGAATGAAATCAC 57.276 40.909 0.00 0.00 39.69 3.06
6 7 5.422650 TGATTCCATTGCCAGAATGAAATCA 59.577 36.000 5.99 5.99 39.69 2.57
7 8 5.909477 TGATTCCATTGCCAGAATGAAATC 58.091 37.500 0.00 0.00 39.69 2.17
8 9 5.163343 CCTGATTCCATTGCCAGAATGAAAT 60.163 40.000 0.00 0.00 39.69 2.17
9 10 4.160814 CCTGATTCCATTGCCAGAATGAAA 59.839 41.667 0.00 0.00 39.69 2.69
10 11 3.702548 CCTGATTCCATTGCCAGAATGAA 59.297 43.478 0.00 0.00 39.69 2.57
11 12 3.293337 CCTGATTCCATTGCCAGAATGA 58.707 45.455 0.00 0.00 39.69 2.57
12 13 2.364324 CCCTGATTCCATTGCCAGAATG 59.636 50.000 0.00 0.00 32.91 2.67
13 14 2.245546 TCCCTGATTCCATTGCCAGAAT 59.754 45.455 0.00 0.00 35.43 2.40
14 15 1.640149 TCCCTGATTCCATTGCCAGAA 59.360 47.619 0.00 0.00 0.00 3.02
15 16 1.213678 CTCCCTGATTCCATTGCCAGA 59.786 52.381 0.00 0.00 0.00 3.86
16 17 1.213678 TCTCCCTGATTCCATTGCCAG 59.786 52.381 0.00 0.00 0.00 4.85
17 18 1.213678 CTCTCCCTGATTCCATTGCCA 59.786 52.381 0.00 0.00 0.00 4.92
18 19 1.492176 TCTCTCCCTGATTCCATTGCC 59.508 52.381 0.00 0.00 0.00 4.52
19 20 2.570135 GTCTCTCCCTGATTCCATTGC 58.430 52.381 0.00 0.00 0.00 3.56
68 69 3.091545 TGTCAATTGGAAGGCAAGATCC 58.908 45.455 5.42 0.00 36.21 3.36
185 186 4.877823 TGAATCTTGAGATTTACGCTGCAT 59.122 37.500 7.60 0.00 44.14 3.96
196 197 8.627208 AACAGTACAAATGTGAATCTTGAGAT 57.373 30.769 0.00 0.00 36.07 2.75
240 241 7.231467 AGGGAAAAGGCGTATATATTGATTGT 58.769 34.615 0.00 0.00 0.00 2.71
291 292 7.502226 TCTTTTTGATGAGTCATGTGTAACCTT 59.498 33.333 11.20 0.00 34.36 3.50
292 293 6.998074 TCTTTTTGATGAGTCATGTGTAACCT 59.002 34.615 11.20 0.00 34.36 3.50
293 294 7.202016 TCTTTTTGATGAGTCATGTGTAACC 57.798 36.000 11.20 0.00 34.36 2.85
294 295 9.683069 ATTTCTTTTTGATGAGTCATGTGTAAC 57.317 29.630 11.20 0.00 33.56 2.50
320 321 9.891828 CGCAGCCTTATCATTATATTGTTTTTA 57.108 29.630 0.00 0.00 0.00 1.52
321 322 8.413229 ACGCAGCCTTATCATTATATTGTTTTT 58.587 29.630 0.00 0.00 0.00 1.94
322 323 7.862372 CACGCAGCCTTATCATTATATTGTTTT 59.138 33.333 0.00 0.00 0.00 2.43
323 324 7.013274 ACACGCAGCCTTATCATTATATTGTTT 59.987 33.333 0.00 0.00 0.00 2.83
324 325 6.486657 ACACGCAGCCTTATCATTATATTGTT 59.513 34.615 0.00 0.00 0.00 2.83
325 326 5.997746 ACACGCAGCCTTATCATTATATTGT 59.002 36.000 0.00 0.00 0.00 2.71
326 327 6.369890 AGACACGCAGCCTTATCATTATATTG 59.630 38.462 0.00 0.00 0.00 1.90
327 328 6.467677 AGACACGCAGCCTTATCATTATATT 58.532 36.000 0.00 0.00 0.00 1.28
328 329 6.042638 AGACACGCAGCCTTATCATTATAT 57.957 37.500 0.00 0.00 0.00 0.86
329 330 5.468540 AGACACGCAGCCTTATCATTATA 57.531 39.130 0.00 0.00 0.00 0.98
330 331 4.342862 AGACACGCAGCCTTATCATTAT 57.657 40.909 0.00 0.00 0.00 1.28
331 332 3.819564 AGACACGCAGCCTTATCATTA 57.180 42.857 0.00 0.00 0.00 1.90
332 333 2.698855 AGACACGCAGCCTTATCATT 57.301 45.000 0.00 0.00 0.00 2.57
333 334 4.202253 TGAATAGACACGCAGCCTTATCAT 60.202 41.667 0.00 0.00 0.00 2.45
334 335 3.132111 TGAATAGACACGCAGCCTTATCA 59.868 43.478 0.00 0.00 0.00 2.15
335 336 3.717707 TGAATAGACACGCAGCCTTATC 58.282 45.455 0.00 0.00 0.00 1.75
349 350 3.974719 AGAGGAGAGCACACTGAATAGA 58.025 45.455 0.00 0.00 0.00 1.98
394 395 9.333497 CAATGCGATCGTTATGAAATTATCAAT 57.667 29.630 17.81 0.00 42.54 2.57
395 396 8.341903 ACAATGCGATCGTTATGAAATTATCAA 58.658 29.630 17.81 0.00 42.54 2.57
396 397 7.860613 ACAATGCGATCGTTATGAAATTATCA 58.139 30.769 17.81 1.21 43.67 2.15
397 398 8.713765 AACAATGCGATCGTTATGAAATTATC 57.286 30.769 17.81 0.00 0.00 1.75
410 411 3.201726 AGGTGAAAAACAATGCGATCG 57.798 42.857 11.69 11.69 0.00 3.69
413 414 3.308323 GCAAAAGGTGAAAAACAATGCGA 59.692 39.130 0.00 0.00 0.00 5.10
417 418 6.373774 TCATGTTGCAAAAGGTGAAAAACAAT 59.626 30.769 0.00 0.00 33.21 2.71
459 463 2.157738 GTTCAGCCTCAAGATGCACTT 58.842 47.619 0.00 0.00 39.70 3.16
464 468 2.295885 GGATGGTTCAGCCTCAAGATG 58.704 52.381 0.00 0.00 36.92 2.90
506 510 5.109210 TCGACCACTCTATTGTAATGCAAG 58.891 41.667 0.00 0.00 40.86 4.01
525 529 7.571026 CAATCAGACTATGAAAATGGATCGAC 58.429 38.462 0.00 0.00 42.53 4.20
547 551 0.326808 ATCAATGGCCCCCAAGCAAT 60.327 50.000 0.00 0.00 36.95 3.56
550 554 0.185901 TAGATCAATGGCCCCCAAGC 59.814 55.000 0.00 0.00 36.95 4.01
559 563 5.046529 CCTTCTTCACTCGTAGATCAATGG 58.953 45.833 0.00 0.00 33.89 3.16
570 574 3.891977 TCCATATCTCCCTTCTTCACTCG 59.108 47.826 0.00 0.00 0.00 4.18
577 581 5.332743 GAGATCTGTCCATATCTCCCTTCT 58.667 45.833 0.00 0.00 41.44 2.85
595 599 7.852945 CACAAACAATAAAGCTATTCCGAGATC 59.147 37.037 0.00 0.00 0.00 2.75
598 602 7.064609 TCTCACAAACAATAAAGCTATTCCGAG 59.935 37.037 0.00 0.00 0.00 4.63
627 631 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
630 634 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
633 637 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
635 639 7.954788 AGAGTTGAGACACTTATTTTGAGAC 57.045 36.000 0.00 0.00 0.00 3.36
673 677 7.491696 GTGTCTCAACTTTGTACTAGTTTCAGT 59.508 37.037 0.00 0.00 33.73 3.41
675 679 7.553334 AGTGTCTCAACTTTGTACTAGTTTCA 58.447 34.615 0.00 0.00 33.73 2.69
676 680 8.421673 AAGTGTCTCAACTTTGTACTAGTTTC 57.578 34.615 0.00 0.00 37.05 2.78
685 689 8.837389 GTCCTAAAATAAGTGTCTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
813 3438 8.303876 GCTTACAAATTTTTGGGTTCTCATCTA 58.696 33.333 7.85 0.00 42.34 1.98
814 3439 7.154656 GCTTACAAATTTTTGGGTTCTCATCT 58.845 34.615 7.85 0.00 42.34 2.90
815 3440 6.368791 GGCTTACAAATTTTTGGGTTCTCATC 59.631 38.462 7.85 0.00 42.34 2.92
816 3441 6.183361 TGGCTTACAAATTTTTGGGTTCTCAT 60.183 34.615 7.85 0.00 42.34 2.90
817 3442 5.129485 TGGCTTACAAATTTTTGGGTTCTCA 59.871 36.000 7.85 0.00 42.34 3.27
841 3466 1.750332 CGCCACCATATCCAACCACAT 60.750 52.381 0.00 0.00 0.00 3.21
905 3530 3.834799 GTGGGCCTAGCTACGCGT 61.835 66.667 19.17 19.17 0.00 6.01
913 3538 2.822399 GGGTCATCGTGGGCCTAG 59.178 66.667 4.53 0.00 0.00 3.02
921 3546 2.994995 TGTCTGGCGGGTCATCGT 60.995 61.111 0.00 0.00 0.00 3.73
932 3557 1.078848 CTTCCCTTCCGCTGTCTGG 60.079 63.158 0.00 0.00 0.00 3.86
1143 3783 1.073199 CTGCGACCCCTTGGACTTT 59.927 57.895 0.00 0.00 34.81 2.66
1200 3840 1.302752 TGCGCTGACCTTGCAGATT 60.303 52.632 9.73 0.00 38.14 2.40
1234 3880 5.883673 CCGAGATAGTAGGGATTAGGAAGAG 59.116 48.000 0.00 0.00 0.00 2.85
1255 3901 2.184322 GCTTCAGATCCGTGCCGA 59.816 61.111 0.00 0.00 0.00 5.54
1305 3957 4.077188 GAACAGGACAGCGCGCAC 62.077 66.667 35.10 22.67 0.00 5.34
1326 3978 5.339695 CCCCAGAATTACTACTAGCCCAAAA 60.340 44.000 0.00 0.00 0.00 2.44
1327 3979 4.165372 CCCCAGAATTACTACTAGCCCAAA 59.835 45.833 0.00 0.00 0.00 3.28
1462 4169 2.222819 GCATCAATCACGAGGAACGAAC 60.223 50.000 0.00 0.00 45.77 3.95
1463 4170 1.999735 GCATCAATCACGAGGAACGAA 59.000 47.619 0.00 0.00 45.77 3.85
1464 4171 1.067213 TGCATCAATCACGAGGAACGA 60.067 47.619 0.00 0.00 45.77 3.85
1578 4285 2.095461 GGTTTCTCCTTGGGATGCTTC 58.905 52.381 0.00 0.00 0.00 3.86
1760 4468 5.241064 AGAAGGCAAATACATGCTCATCATC 59.759 40.000 0.00 0.00 45.68 2.92
1761 4469 5.009710 CAGAAGGCAAATACATGCTCATCAT 59.990 40.000 0.00 0.00 45.68 2.45
1785 4493 2.408050 ACAGTTCGACAAGATGCTCAC 58.592 47.619 0.00 0.00 0.00 3.51
1790 4498 2.407090 TGCTGACAGTTCGACAAGATG 58.593 47.619 3.99 0.00 0.00 2.90
1799 4508 4.757149 AGTTTGAAGGTATGCTGACAGTTC 59.243 41.667 3.99 0.00 0.00 3.01
1861 4570 5.735354 GCAACAGGAGAATGCCATAATTGAG 60.735 44.000 0.00 0.00 34.03 3.02
1864 4576 3.067180 CGCAACAGGAGAATGCCATAATT 59.933 43.478 0.00 0.00 36.75 1.40
1887 4599 2.029728 CGGCTCTTTAGACAGCAAATCG 59.970 50.000 0.00 0.00 37.38 3.34
1924 4636 1.003851 ACACAAACACGTGAACGAGG 58.996 50.000 25.01 9.28 43.02 4.63
1933 4645 5.445407 GCTGTATATACCACACACAAACACG 60.445 44.000 10.38 0.00 0.00 4.49
1938 4660 4.081142 AGCTGCTGTATATACCACACACAA 60.081 41.667 10.38 0.00 0.00 3.33
1961 4683 7.812191 CGAATAACCAGAACAATTCATTTTCCA 59.188 33.333 0.00 0.00 0.00 3.53
2037 4759 3.866703 TCTTTTGTATGTCACCACCCA 57.133 42.857 0.00 0.00 0.00 4.51
2180 4916 1.212751 GCCTCAAATGCGTGGAACC 59.787 57.895 0.00 0.00 0.00 3.62
2184 4920 1.337074 ACAATTGCCTCAAATGCGTGG 60.337 47.619 5.05 0.00 28.34 4.94
2203 4939 3.129287 CCAGGGACACAGCAAATCAATAC 59.871 47.826 0.00 0.00 0.00 1.89
2210 4946 1.228245 GCTCCAGGGACACAGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
2239 4975 5.347093 CCGTCTATGATTTGGATGATTCTCG 59.653 44.000 0.00 0.00 0.00 4.04
2274 5010 3.064545 GCTGGTGTCAATCATAGTGAAGC 59.935 47.826 0.00 0.00 0.00 3.86
2292 5028 5.794687 TTTCTCGTATGTTTACATGCTGG 57.205 39.130 5.64 0.97 36.91 4.85
2392 5243 5.458779 GCGAGCAAACTTTACAAGAACAAAT 59.541 36.000 0.00 0.00 0.00 2.32
2402 5253 1.154282 GGCCGCGAGCAAACTTTAC 60.154 57.895 8.23 0.00 46.50 2.01
2404 5255 2.193536 AAGGCCGCGAGCAAACTTT 61.194 52.632 8.23 0.00 46.50 2.66
2436 5287 1.402968 ACAAAGCATATCAAGGCGCAG 59.597 47.619 10.83 0.00 37.52 5.18
2445 5296 4.024218 GCTGAGACCATCACAAAGCATATC 60.024 45.833 0.00 0.00 33.22 1.63
2446 5297 3.881688 GCTGAGACCATCACAAAGCATAT 59.118 43.478 0.00 0.00 33.22 1.78
2447 5298 3.273434 GCTGAGACCATCACAAAGCATA 58.727 45.455 0.00 0.00 33.22 3.14
2448 5299 2.089980 GCTGAGACCATCACAAAGCAT 58.910 47.619 0.00 0.00 33.22 3.79
2449 5300 1.202794 TGCTGAGACCATCACAAAGCA 60.203 47.619 0.00 0.00 34.15 3.91
2450 5301 1.527034 TGCTGAGACCATCACAAAGC 58.473 50.000 0.00 0.00 33.22 3.51
2451 5302 2.880268 TGTTGCTGAGACCATCACAAAG 59.120 45.455 0.00 0.00 33.61 2.77
2452 5303 2.618241 GTGTTGCTGAGACCATCACAAA 59.382 45.455 0.00 0.00 34.60 2.83
2462 5313 2.103094 ACTGTAGCTTGTGTTGCTGAGA 59.897 45.455 0.00 0.00 41.32 3.27
2499 5350 9.840427 TCTTCTTAATCAATGAAAATCCGTTTC 57.160 29.630 0.00 0.00 45.13 2.78
2501 5352 9.846248 CTTCTTCTTAATCAATGAAAATCCGTT 57.154 29.630 0.00 0.00 0.00 4.44
2502 5353 9.231297 TCTTCTTCTTAATCAATGAAAATCCGT 57.769 29.630 0.00 0.00 0.00 4.69
2503 5354 9.713740 CTCTTCTTCTTAATCAATGAAAATCCG 57.286 33.333 0.00 0.00 0.00 4.18
2509 5360 9.107177 GCATCTCTCTTCTTCTTAATCAATGAA 57.893 33.333 0.00 0.00 0.00 2.57
2510 5361 7.714377 GGCATCTCTCTTCTTCTTAATCAATGA 59.286 37.037 0.00 0.00 0.00 2.57
2511 5362 7.716123 AGGCATCTCTCTTCTTCTTAATCAATG 59.284 37.037 0.00 0.00 0.00 2.82
2512 5363 7.716123 CAGGCATCTCTCTTCTTCTTAATCAAT 59.284 37.037 0.00 0.00 0.00 2.57
2513 5364 7.046652 CAGGCATCTCTCTTCTTCTTAATCAA 58.953 38.462 0.00 0.00 0.00 2.57
2514 5365 6.407865 CCAGGCATCTCTCTTCTTCTTAATCA 60.408 42.308 0.00 0.00 0.00 2.57
2515 5366 5.990996 CCAGGCATCTCTCTTCTTCTTAATC 59.009 44.000 0.00 0.00 0.00 1.75
2516 5367 5.428131 ACCAGGCATCTCTCTTCTTCTTAAT 59.572 40.000 0.00 0.00 0.00 1.40
2517 5368 4.780021 ACCAGGCATCTCTCTTCTTCTTAA 59.220 41.667 0.00 0.00 0.00 1.85
2518 5369 4.357325 ACCAGGCATCTCTCTTCTTCTTA 58.643 43.478 0.00 0.00 0.00 2.10
2519 5370 3.180507 ACCAGGCATCTCTCTTCTTCTT 58.819 45.455 0.00 0.00 0.00 2.52
2520 5371 2.831565 ACCAGGCATCTCTCTTCTTCT 58.168 47.619 0.00 0.00 0.00 2.85
2521 5372 3.625649 AACCAGGCATCTCTCTTCTTC 57.374 47.619 0.00 0.00 0.00 2.87
2522 5373 5.707066 ATTAACCAGGCATCTCTCTTCTT 57.293 39.130 0.00 0.00 0.00 2.52
2523 5374 5.707066 AATTAACCAGGCATCTCTCTTCT 57.293 39.130 0.00 0.00 0.00 2.85
2524 5375 6.821388 TCTAATTAACCAGGCATCTCTCTTC 58.179 40.000 0.00 0.00 0.00 2.87
2525 5376 6.183361 CCTCTAATTAACCAGGCATCTCTCTT 60.183 42.308 0.00 0.00 0.00 2.85
2526 5377 5.306678 CCTCTAATTAACCAGGCATCTCTCT 59.693 44.000 0.00 0.00 0.00 3.10
2527 5378 5.305644 TCCTCTAATTAACCAGGCATCTCTC 59.694 44.000 0.00 0.00 0.00 3.20
2528 5379 5.219739 TCCTCTAATTAACCAGGCATCTCT 58.780 41.667 0.00 0.00 0.00 3.10
2529 5380 5.552870 TCCTCTAATTAACCAGGCATCTC 57.447 43.478 0.00 0.00 0.00 2.75
2530 5381 5.975988 TTCCTCTAATTAACCAGGCATCT 57.024 39.130 0.00 0.00 0.00 2.90
2531 5382 6.183360 GGTTTTCCTCTAATTAACCAGGCATC 60.183 42.308 0.00 0.00 38.46 3.91
2532 5383 5.656859 GGTTTTCCTCTAATTAACCAGGCAT 59.343 40.000 0.00 0.00 38.46 4.40
2533 5384 5.014202 GGTTTTCCTCTAATTAACCAGGCA 58.986 41.667 0.00 0.00 38.46 4.75
2534 5385 4.095932 CGGTTTTCCTCTAATTAACCAGGC 59.904 45.833 0.00 0.00 38.49 4.85
2535 5386 4.638865 CCGGTTTTCCTCTAATTAACCAGG 59.361 45.833 0.00 2.66 38.49 4.45
2536 5387 4.638865 CCCGGTTTTCCTCTAATTAACCAG 59.361 45.833 0.00 0.00 38.49 4.00
2537 5388 4.591929 CCCGGTTTTCCTCTAATTAACCA 58.408 43.478 0.00 0.00 38.49 3.67
2538 5389 3.379372 GCCCGGTTTTCCTCTAATTAACC 59.621 47.826 0.00 0.00 37.95 2.85
2539 5390 3.064408 CGCCCGGTTTTCCTCTAATTAAC 59.936 47.826 0.00 0.00 37.95 2.01
2540 5391 3.055240 TCGCCCGGTTTTCCTCTAATTAA 60.055 43.478 0.00 0.00 37.95 1.40
2541 5392 2.500910 TCGCCCGGTTTTCCTCTAATTA 59.499 45.455 0.00 0.00 37.95 1.40
2542 5393 1.279846 TCGCCCGGTTTTCCTCTAATT 59.720 47.619 0.00 0.00 37.95 1.40
2543 5394 0.906775 TCGCCCGGTTTTCCTCTAAT 59.093 50.000 0.00 0.00 37.95 1.73
2544 5395 0.686224 TTCGCCCGGTTTTCCTCTAA 59.314 50.000 0.00 0.00 37.95 2.10
2545 5396 0.686224 TTTCGCCCGGTTTTCCTCTA 59.314 50.000 0.00 0.00 37.95 2.43
2546 5397 0.179012 TTTTCGCCCGGTTTTCCTCT 60.179 50.000 0.00 0.00 37.95 3.69
2547 5398 0.039798 GTTTTCGCCCGGTTTTCCTC 60.040 55.000 0.00 0.00 37.95 3.71
2548 5399 1.457823 GGTTTTCGCCCGGTTTTCCT 61.458 55.000 0.00 0.00 37.95 3.36
2549 5400 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
2550 5401 0.102663 TTGGTTTTCGCCCGGTTTTC 59.897 50.000 0.00 0.00 0.00 2.29
2551 5402 0.103390 CTTGGTTTTCGCCCGGTTTT 59.897 50.000 0.00 0.00 0.00 2.43
2552 5403 0.752376 TCTTGGTTTTCGCCCGGTTT 60.752 50.000 0.00 0.00 0.00 3.27
2553 5404 0.538746 ATCTTGGTTTTCGCCCGGTT 60.539 50.000 0.00 0.00 0.00 4.44
2554 5405 0.538746 AATCTTGGTTTTCGCCCGGT 60.539 50.000 0.00 0.00 0.00 5.28
2555 5406 1.131693 GTAATCTTGGTTTTCGCCCGG 59.868 52.381 0.00 0.00 0.00 5.73
2556 5407 1.807742 TGTAATCTTGGTTTTCGCCCG 59.192 47.619 0.00 0.00 0.00 6.13
2557 5408 3.926821 TTGTAATCTTGGTTTTCGCCC 57.073 42.857 0.00 0.00 0.00 6.13
2558 5409 3.985279 GGTTTGTAATCTTGGTTTTCGCC 59.015 43.478 0.00 0.00 0.00 5.54
2559 5410 3.985279 GGGTTTGTAATCTTGGTTTTCGC 59.015 43.478 0.00 0.00 0.00 4.70
2560 5411 4.038162 TGGGGTTTGTAATCTTGGTTTTCG 59.962 41.667 0.00 0.00 0.00 3.46
2561 5412 5.163395 TGTGGGGTTTGTAATCTTGGTTTTC 60.163 40.000 0.00 0.00 0.00 2.29
2562 5413 4.717280 TGTGGGGTTTGTAATCTTGGTTTT 59.283 37.500 0.00 0.00 0.00 2.43
2563 5414 4.290942 TGTGGGGTTTGTAATCTTGGTTT 58.709 39.130 0.00 0.00 0.00 3.27
2564 5415 3.917300 TGTGGGGTTTGTAATCTTGGTT 58.083 40.909 0.00 0.00 0.00 3.67
2565 5416 3.603965 TGTGGGGTTTGTAATCTTGGT 57.396 42.857 0.00 0.00 0.00 3.67
2566 5417 3.195396 CCATGTGGGGTTTGTAATCTTGG 59.805 47.826 0.00 0.00 0.00 3.61
2567 5418 4.454728 CCATGTGGGGTTTGTAATCTTG 57.545 45.455 0.00 0.00 0.00 3.02
2581 5432 2.417257 CCACGAATGCCCCATGTGG 61.417 63.158 0.00 0.00 43.55 4.17
2582 5433 1.378382 TCCACGAATGCCCCATGTG 60.378 57.895 0.00 0.00 0.00 3.21
2583 5434 1.378514 GTCCACGAATGCCCCATGT 60.379 57.895 0.00 0.00 0.00 3.21
2584 5435 2.472059 CGTCCACGAATGCCCCATG 61.472 63.158 0.00 0.00 43.02 3.66
2585 5436 2.124736 CGTCCACGAATGCCCCAT 60.125 61.111 0.00 0.00 43.02 4.00
2586 5437 3.315140 TCGTCCACGAATGCCCCA 61.315 61.111 0.00 0.00 46.30 4.96
2595 5446 3.041940 GTGGCCAAGTCGTCCACG 61.042 66.667 7.24 0.00 40.54 4.94
2597 5448 1.098712 GTTTGTGGCCAAGTCGTCCA 61.099 55.000 7.24 0.00 0.00 4.02
2598 5449 1.652563 GTTTGTGGCCAAGTCGTCC 59.347 57.895 7.24 0.00 0.00 4.79
2599 5450 1.278637 CGTTTGTGGCCAAGTCGTC 59.721 57.895 7.24 0.00 0.00 4.20
2600 5451 2.830285 GCGTTTGTGGCCAAGTCGT 61.830 57.895 7.24 0.00 34.55 4.34
2601 5452 2.051345 GCGTTTGTGGCCAAGTCG 60.051 61.111 7.24 11.76 34.90 4.18
2608 5459 0.869880 GACTGTTTGGCGTTTGTGGC 60.870 55.000 0.00 0.00 0.00 5.01
2609 5460 0.591236 CGACTGTTTGGCGTTTGTGG 60.591 55.000 0.00 0.00 43.40 4.17
2610 5461 2.853457 CGACTGTTTGGCGTTTGTG 58.147 52.632 0.00 0.00 43.40 3.33
2617 5468 0.317854 GCTTTGGTCGACTGTTTGGC 60.318 55.000 16.46 8.95 0.00 4.52
2618 5469 0.041312 CGCTTTGGTCGACTGTTTGG 60.041 55.000 16.46 2.81 0.00 3.28
2619 5470 0.655733 ACGCTTTGGTCGACTGTTTG 59.344 50.000 16.46 4.25 0.00 2.93
2620 5471 0.935196 GACGCTTTGGTCGACTGTTT 59.065 50.000 16.46 0.00 0.00 2.83
2621 5472 2.601562 GACGCTTTGGTCGACTGTT 58.398 52.632 16.46 0.00 0.00 3.16
2622 5473 4.338327 GACGCTTTGGTCGACTGT 57.662 55.556 16.46 4.79 0.00 3.55
2628 5479 0.716108 CTGTCATCGACGCTTTGGTC 59.284 55.000 0.00 0.00 34.95 4.02
2629 5480 0.670546 CCTGTCATCGACGCTTTGGT 60.671 55.000 0.00 0.00 34.95 3.67
2630 5481 0.389817 TCCTGTCATCGACGCTTTGG 60.390 55.000 0.00 0.00 34.95 3.28
2631 5482 0.716108 GTCCTGTCATCGACGCTTTG 59.284 55.000 0.00 0.00 34.95 2.77
2632 5483 0.317160 TGTCCTGTCATCGACGCTTT 59.683 50.000 0.00 0.00 34.95 3.51
2633 5484 0.109086 CTGTCCTGTCATCGACGCTT 60.109 55.000 0.00 0.00 34.95 4.68
2634 5485 1.508545 CTGTCCTGTCATCGACGCT 59.491 57.895 0.00 0.00 34.95 5.07
2635 5486 2.161486 GCTGTCCTGTCATCGACGC 61.161 63.158 0.00 0.00 34.95 5.19
2636 5487 0.524392 GAGCTGTCCTGTCATCGACG 60.524 60.000 0.00 0.00 34.95 5.12
2637 5488 0.179124 GGAGCTGTCCTGTCATCGAC 60.179 60.000 0.00 0.00 40.17 4.20
2638 5489 1.657751 CGGAGCTGTCCTGTCATCGA 61.658 60.000 0.00 0.00 41.34 3.59
2639 5490 1.226802 CGGAGCTGTCCTGTCATCG 60.227 63.158 0.00 0.00 41.34 3.84
2640 5491 0.749649 ATCGGAGCTGTCCTGTCATC 59.250 55.000 0.00 0.00 41.34 2.92
2641 5492 1.198713 AATCGGAGCTGTCCTGTCAT 58.801 50.000 0.00 0.00 41.34 3.06
2642 5493 0.976641 AAATCGGAGCTGTCCTGTCA 59.023 50.000 0.00 0.00 41.34 3.58
2643 5494 1.734465 CAAAATCGGAGCTGTCCTGTC 59.266 52.381 0.00 0.00 41.34 3.51
2644 5495 1.813513 CAAAATCGGAGCTGTCCTGT 58.186 50.000 0.00 0.00 41.34 4.00
2645 5496 0.449388 GCAAAATCGGAGCTGTCCTG 59.551 55.000 0.00 0.00 41.34 3.86
2646 5497 0.326264 AGCAAAATCGGAGCTGTCCT 59.674 50.000 0.00 0.00 41.34 3.85
2647 5498 2.859992 AGCAAAATCGGAGCTGTCC 58.140 52.632 0.00 0.00 37.20 4.02
2651 5502 0.037326 TCGTCAGCAAAATCGGAGCT 60.037 50.000 0.00 0.00 39.63 4.09
2652 5503 0.371645 CTCGTCAGCAAAATCGGAGC 59.628 55.000 0.00 0.00 0.00 4.70
2653 5504 1.714794 ACTCGTCAGCAAAATCGGAG 58.285 50.000 0.00 0.00 0.00 4.63
2654 5505 2.163818 AACTCGTCAGCAAAATCGGA 57.836 45.000 0.00 0.00 0.00 4.55
2655 5506 2.223144 TGAAACTCGTCAGCAAAATCGG 59.777 45.455 0.00 0.00 0.00 4.18
2656 5507 3.218398 GTGAAACTCGTCAGCAAAATCG 58.782 45.455 0.00 0.00 0.00 3.34
2657 5508 4.209452 TGTGAAACTCGTCAGCAAAATC 57.791 40.909 0.00 0.00 38.04 2.17
2658 5509 3.003689 CCTGTGAAACTCGTCAGCAAAAT 59.996 43.478 0.00 0.00 38.04 1.82
2659 5510 2.354510 CCTGTGAAACTCGTCAGCAAAA 59.645 45.455 0.00 0.00 38.04 2.44
2660 5511 1.939934 CCTGTGAAACTCGTCAGCAAA 59.060 47.619 0.00 0.00 38.04 3.68
2661 5512 1.138069 TCCTGTGAAACTCGTCAGCAA 59.862 47.619 0.00 0.00 38.04 3.91
2662 5513 0.750249 TCCTGTGAAACTCGTCAGCA 59.250 50.000 0.00 0.00 38.04 4.41
2663 5514 1.000163 TCTCCTGTGAAACTCGTCAGC 60.000 52.381 0.00 0.00 38.04 4.26
2664 5515 3.371102 TTCTCCTGTGAAACTCGTCAG 57.629 47.619 0.00 0.00 38.04 3.51
2665 5516 3.132289 ACTTTCTCCTGTGAAACTCGTCA 59.868 43.478 0.00 0.00 38.04 4.35
2666 5517 3.718815 ACTTTCTCCTGTGAAACTCGTC 58.281 45.455 0.00 0.00 38.04 4.20
2667 5518 3.821421 ACTTTCTCCTGTGAAACTCGT 57.179 42.857 0.00 0.00 38.04 4.18
2668 5519 3.303395 GCAACTTTCTCCTGTGAAACTCG 60.303 47.826 0.00 0.00 38.04 4.18
2669 5520 3.627577 TGCAACTTTCTCCTGTGAAACTC 59.372 43.478 0.00 0.00 38.04 3.01
2670 5521 3.620488 TGCAACTTTCTCCTGTGAAACT 58.380 40.909 0.00 0.00 38.04 2.66
2671 5522 4.096382 TCTTGCAACTTTCTCCTGTGAAAC 59.904 41.667 0.00 0.00 33.11 2.78
2672 5523 4.269183 TCTTGCAACTTTCTCCTGTGAAA 58.731 39.130 0.00 0.00 35.07 2.69
2673 5524 3.884895 TCTTGCAACTTTCTCCTGTGAA 58.115 40.909 0.00 0.00 0.00 3.18
2674 5525 3.558931 TCTTGCAACTTTCTCCTGTGA 57.441 42.857 0.00 0.00 0.00 3.58
2675 5526 4.612259 CGAATCTTGCAACTTTCTCCTGTG 60.612 45.833 0.00 0.00 0.00 3.66
2676 5527 3.499918 CGAATCTTGCAACTTTCTCCTGT 59.500 43.478 0.00 0.00 0.00 4.00
2677 5528 3.669023 GCGAATCTTGCAACTTTCTCCTG 60.669 47.826 0.00 0.00 0.00 3.86
2678 5529 2.485814 GCGAATCTTGCAACTTTCTCCT 59.514 45.455 0.00 0.00 0.00 3.69
2679 5530 2.226437 TGCGAATCTTGCAACTTTCTCC 59.774 45.455 0.00 0.00 39.87 3.71
2680 5531 3.542712 TGCGAATCTTGCAACTTTCTC 57.457 42.857 0.00 0.00 39.87 2.87
2681 5532 3.425359 CGATGCGAATCTTGCAACTTTCT 60.425 43.478 0.96 0.00 46.87 2.52
2682 5533 2.842485 CGATGCGAATCTTGCAACTTTC 59.158 45.455 0.96 0.62 46.87 2.62
2683 5534 2.483877 TCGATGCGAATCTTGCAACTTT 59.516 40.909 0.96 0.00 46.87 2.66
2684 5535 2.076100 TCGATGCGAATCTTGCAACTT 58.924 42.857 0.96 0.00 46.87 2.66
2685 5536 1.394917 GTCGATGCGAATCTTGCAACT 59.605 47.619 0.96 0.00 46.87 3.16
2686 5537 1.529826 GGTCGATGCGAATCTTGCAAC 60.530 52.381 0.96 0.00 46.87 4.17
2687 5538 0.726827 GGTCGATGCGAATCTTGCAA 59.273 50.000 0.96 0.00 46.87 4.08
2689 5540 1.789464 CTAGGTCGATGCGAATCTTGC 59.211 52.381 0.96 0.00 37.72 4.01
2690 5541 3.046390 GACTAGGTCGATGCGAATCTTG 58.954 50.000 0.96 0.00 37.72 3.02
2691 5542 2.034812 GGACTAGGTCGATGCGAATCTT 59.965 50.000 0.96 0.00 37.72 2.40
2692 5543 1.609555 GGACTAGGTCGATGCGAATCT 59.390 52.381 0.96 0.00 37.72 2.40
2693 5544 1.337071 TGGACTAGGTCGATGCGAATC 59.663 52.381 0.00 0.00 37.72 2.52
2694 5545 1.399714 TGGACTAGGTCGATGCGAAT 58.600 50.000 0.00 0.00 37.72 3.34
2695 5546 1.135199 GTTGGACTAGGTCGATGCGAA 60.135 52.381 0.00 0.00 37.72 4.70
2696 5547 0.454600 GTTGGACTAGGTCGATGCGA 59.545 55.000 0.00 0.00 32.65 5.10
2697 5548 0.866061 CGTTGGACTAGGTCGATGCG 60.866 60.000 0.00 0.00 32.65 4.73
2698 5549 1.146358 GCGTTGGACTAGGTCGATGC 61.146 60.000 0.00 0.00 32.65 3.91
2699 5550 0.172578 TGCGTTGGACTAGGTCGATG 59.827 55.000 0.00 0.00 32.65 3.84
2700 5551 0.892755 TTGCGTTGGACTAGGTCGAT 59.107 50.000 0.00 0.00 32.65 3.59
2701 5552 0.038892 GTTGCGTTGGACTAGGTCGA 60.039 55.000 0.00 0.00 32.65 4.20
2702 5553 0.319211 TGTTGCGTTGGACTAGGTCG 60.319 55.000 0.00 0.00 32.65 4.79
2703 5554 2.000447 GATGTTGCGTTGGACTAGGTC 59.000 52.381 0.00 0.00 0.00 3.85
2704 5555 1.338769 GGATGTTGCGTTGGACTAGGT 60.339 52.381 0.00 0.00 0.00 3.08
2705 5556 1.369625 GGATGTTGCGTTGGACTAGG 58.630 55.000 0.00 0.00 0.00 3.02
2706 5557 0.999406 CGGATGTTGCGTTGGACTAG 59.001 55.000 0.00 0.00 0.00 2.57
2707 5558 0.390603 CCGGATGTTGCGTTGGACTA 60.391 55.000 0.00 0.00 0.00 2.59
2708 5559 1.671054 CCGGATGTTGCGTTGGACT 60.671 57.895 0.00 0.00 0.00 3.85
2709 5560 1.635663 CTCCGGATGTTGCGTTGGAC 61.636 60.000 3.57 0.00 0.00 4.02
2710 5561 1.375396 CTCCGGATGTTGCGTTGGA 60.375 57.895 3.57 0.00 0.00 3.53
2711 5562 1.361668 CTCTCCGGATGTTGCGTTGG 61.362 60.000 3.57 0.00 0.00 3.77
2712 5563 1.970917 GCTCTCCGGATGTTGCGTTG 61.971 60.000 3.57 0.00 0.00 4.10
2713 5564 1.741770 GCTCTCCGGATGTTGCGTT 60.742 57.895 3.57 0.00 0.00 4.84
2714 5565 2.125512 GCTCTCCGGATGTTGCGT 60.126 61.111 3.57 0.00 0.00 5.24
2715 5566 2.125552 TGCTCTCCGGATGTTGCG 60.126 61.111 3.57 0.00 0.00 4.85
2716 5567 2.109126 GGTGCTCTCCGGATGTTGC 61.109 63.158 3.57 7.90 0.00 4.17
2717 5568 1.811266 CGGTGCTCTCCGGATGTTG 60.811 63.158 3.57 0.00 45.88 3.33
2718 5569 2.579201 CGGTGCTCTCCGGATGTT 59.421 61.111 3.57 0.00 45.88 2.71
2725 5576 1.816863 TTCAGTGGACGGTGCTCTCC 61.817 60.000 1.04 0.00 0.00 3.71
2726 5577 0.033504 TTTCAGTGGACGGTGCTCTC 59.966 55.000 1.04 0.00 0.00 3.20
2727 5578 0.468226 TTTTCAGTGGACGGTGCTCT 59.532 50.000 0.31 0.00 0.00 4.09
2728 5579 0.586802 GTTTTCAGTGGACGGTGCTC 59.413 55.000 0.31 0.00 0.00 4.26
2729 5580 0.818040 GGTTTTCAGTGGACGGTGCT 60.818 55.000 0.31 0.00 0.00 4.40
2730 5581 1.652563 GGTTTTCAGTGGACGGTGC 59.347 57.895 0.00 0.00 0.00 5.01
2731 5582 1.938861 CGGTTTTCAGTGGACGGTG 59.061 57.895 0.00 0.00 0.00 4.94
2732 5583 1.890510 GCGGTTTTCAGTGGACGGT 60.891 57.895 0.00 0.00 0.00 4.83
2733 5584 2.613506 GGCGGTTTTCAGTGGACGG 61.614 63.158 0.00 0.00 0.00 4.79
2734 5585 2.613506 GGGCGGTTTTCAGTGGACG 61.614 63.158 0.00 0.00 0.00 4.79
2735 5586 1.228154 AGGGCGGTTTTCAGTGGAC 60.228 57.895 0.00 0.00 0.00 4.02
2736 5587 1.072505 GAGGGCGGTTTTCAGTGGA 59.927 57.895 0.00 0.00 0.00 4.02
2737 5588 0.609131 ATGAGGGCGGTTTTCAGTGG 60.609 55.000 0.00 0.00 0.00 4.00
2738 5589 0.523072 CATGAGGGCGGTTTTCAGTG 59.477 55.000 0.00 0.00 0.00 3.66
2739 5590 0.609131 CCATGAGGGCGGTTTTCAGT 60.609 55.000 0.00 0.00 0.00 3.41
2740 5591 0.322456 TCCATGAGGGCGGTTTTCAG 60.322 55.000 0.00 0.00 36.21 3.02
2741 5592 0.322456 CTCCATGAGGGCGGTTTTCA 60.322 55.000 0.00 0.00 36.21 2.69
2742 5593 0.322546 ACTCCATGAGGGCGGTTTTC 60.323 55.000 0.00 0.00 36.21 2.29
2743 5594 0.322546 GACTCCATGAGGGCGGTTTT 60.323 55.000 0.00 0.00 36.21 2.43
2744 5595 1.299976 GACTCCATGAGGGCGGTTT 59.700 57.895 0.00 0.00 36.21 3.27
2745 5596 1.274703 ATGACTCCATGAGGGCGGTT 61.275 55.000 0.00 0.00 36.21 4.44
2746 5597 1.690219 GATGACTCCATGAGGGCGGT 61.690 60.000 0.00 0.00 36.21 5.68
2747 5598 1.070445 GATGACTCCATGAGGGCGG 59.930 63.158 0.00 0.00 36.21 6.13
2748 5599 0.395686 ATGATGACTCCATGAGGGCG 59.604 55.000 0.00 0.00 36.21 6.13
2749 5600 2.228059 CAATGATGACTCCATGAGGGC 58.772 52.381 0.00 0.00 36.21 5.19
2750 5601 2.228059 GCAATGATGACTCCATGAGGG 58.772 52.381 0.00 0.00 33.35 4.30
2751 5602 2.228059 GGCAATGATGACTCCATGAGG 58.772 52.381 0.00 0.00 33.35 3.86
2752 5603 1.871676 CGGCAATGATGACTCCATGAG 59.128 52.381 0.00 0.00 32.09 2.90
2753 5604 1.957668 CGGCAATGATGACTCCATGA 58.042 50.000 0.00 0.00 32.09 3.07
2754 5605 0.309922 GCGGCAATGATGACTCCATG 59.690 55.000 0.00 0.00 32.09 3.66
2755 5606 0.107066 TGCGGCAATGATGACTCCAT 60.107 50.000 0.00 0.00 35.29 3.41
2756 5607 0.745486 CTGCGGCAATGATGACTCCA 60.745 55.000 3.44 0.00 29.70 3.86
2757 5608 0.745845 ACTGCGGCAATGATGACTCC 60.746 55.000 3.44 0.00 29.70 3.85
2758 5609 0.376152 CACTGCGGCAATGATGACTC 59.624 55.000 5.32 0.00 29.70 3.36
2759 5610 1.028330 CCACTGCGGCAATGATGACT 61.028 55.000 13.70 0.00 29.70 3.41
2760 5611 1.430632 CCACTGCGGCAATGATGAC 59.569 57.895 13.70 0.00 0.00 3.06
2761 5612 3.908189 CCACTGCGGCAATGATGA 58.092 55.556 13.70 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.