Multiple sequence alignment - TraesCS6D01G201200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G201200 chr6D 100.000 5020 0 0 1 5020 283305178 283300159 0.000000e+00 9271.0
1 TraesCS6D01G201200 chr6D 84.821 560 57 17 907 1447 455891329 455890779 5.720000e-149 538.0
2 TraesCS6D01G201200 chr6D 99.632 272 1 0 4724 4995 147063471 147063200 9.710000e-137 497.0
3 TraesCS6D01G201200 chr6D 90.698 129 11 1 1486 1613 455890516 455890388 2.400000e-38 171.0
4 TraesCS6D01G201200 chr1A 94.827 3499 127 19 1252 4724 26844749 26848219 0.000000e+00 5409.0
5 TraesCS6D01G201200 chr1A 94.438 3506 137 21 1252 4727 50462728 50459251 0.000000e+00 5341.0
6 TraesCS6D01G201200 chr3A 94.535 3495 139 21 1252 4720 61628631 61632099 0.000000e+00 5349.0
7 TraesCS6D01G201200 chr3A 85.606 924 107 20 1 909 693991776 693990864 0.000000e+00 946.0
8 TraesCS6D01G201200 chr2D 96.828 2207 61 8 580 2780 233139641 233137438 0.000000e+00 3679.0
9 TraesCS6D01G201200 chr2D 97.203 286 7 1 4724 5009 71866973 71866689 2.720000e-132 483.0
10 TraesCS6D01G201200 chr2D 92.308 39 2 1 1448 1486 233138555 233138518 3.000000e-03 54.7
11 TraesCS6D01G201200 chr7D 89.865 2151 128 34 2421 4505 569719593 569717467 0.000000e+00 2682.0
12 TraesCS6D01G201200 chr7D 87.994 708 68 14 1 697 142215368 142214667 0.000000e+00 821.0
13 TraesCS6D01G201200 chr7D 99.632 272 1 0 4724 4995 343938944 343938673 9.710000e-137 497.0
14 TraesCS6D01G201200 chr7D 97.203 286 7 1 4724 5009 522267359 522267643 2.720000e-132 483.0
15 TraesCS6D01G201200 chr7D 91.693 313 24 2 4415 4725 544151802 544151490 2.780000e-117 433.0
16 TraesCS6D01G201200 chr7D 92.182 307 21 3 4414 4720 615697359 615697662 9.980000e-117 431.0
17 TraesCS6D01G201200 chr7D 100.000 29 0 0 4992 5020 548585458 548585486 3.000000e-03 54.7
18 TraesCS6D01G201200 chr6B 89.860 2150 131 34 2421 4501 501359730 501357599 0.000000e+00 2682.0
19 TraesCS6D01G201200 chr6B 93.306 1718 77 18 2385 4069 505326377 505328089 0.000000e+00 2501.0
20 TraesCS6D01G201200 chr6B 93.943 809 42 5 1613 2416 505325571 505326377 0.000000e+00 1216.0
21 TraesCS6D01G201200 chr6B 86.304 920 101 18 1 905 104303898 104304807 0.000000e+00 977.0
22 TraesCS6D01G201200 chr6B 86.534 906 93 22 1 888 16928228 16927334 0.000000e+00 970.0
23 TraesCS6D01G201200 chr6B 81.498 454 61 17 1009 1447 693099869 693099424 8.000000e-93 351.0
24 TraesCS6D01G201200 chr6B 83.121 314 26 13 907 1193 693125518 693125205 1.390000e-65 261.0
25 TraesCS6D01G201200 chr6B 90.551 127 6 3 1493 1613 693124688 693124562 4.020000e-36 163.0
26 TraesCS6D01G201200 chr6B 89.394 132 8 1 1490 1615 693099068 693098937 1.450000e-35 161.0
27 TraesCS6D01G201200 chr4D 89.782 2153 120 37 2421 4505 189519833 189521953 0.000000e+00 2665.0
28 TraesCS6D01G201200 chr4D 84.780 933 89 33 3809 4720 416250218 416251118 0.000000e+00 887.0
29 TraesCS6D01G201200 chr4D 99.632 272 1 0 4724 4995 338223157 338222886 9.710000e-137 497.0
30 TraesCS6D01G201200 chr1B 92.214 1798 100 15 2385 4148 76953652 76955443 0.000000e+00 2508.0
31 TraesCS6D01G201200 chr1B 91.574 807 61 5 1613 2414 76952846 76953650 0.000000e+00 1107.0
32 TraesCS6D01G201200 chr1B 83.871 775 66 28 3978 4723 670718872 670718128 0.000000e+00 684.0
33 TraesCS6D01G201200 chr1B 86.278 583 64 9 4153 4720 529990753 529991334 1.990000e-173 619.0
34 TraesCS6D01G201200 chr1B 87.459 303 32 6 589 888 56052302 56052003 1.340000e-90 344.0
35 TraesCS6D01G201200 chr1B 87.826 230 15 3 3095 3311 22738800 22739029 1.790000e-64 257.0
36 TraesCS6D01G201200 chrUn 91.837 1764 90 18 2421 4147 104826162 104827908 0.000000e+00 2410.0
37 TraesCS6D01G201200 chrUn 99.265 272 2 0 4724 4995 24795168 24795439 4.520000e-135 492.0
38 TraesCS6D01G201200 chrUn 97.552 286 6 1 4724 5009 24801722 24802006 5.840000e-134 488.0
39 TraesCS6D01G201200 chrUn 97.552 286 6 1 4724 5009 24806121 24806405 5.840000e-134 488.0
40 TraesCS6D01G201200 chrUn 86.111 108 12 3 980 1084 262927239 262927132 4.110000e-21 113.0
41 TraesCS6D01G201200 chrUn 85.088 114 14 3 974 1084 262932616 262932729 4.110000e-21 113.0
42 TraesCS6D01G201200 chr2B 89.480 1768 108 18 2421 4147 64326476 64324746 0.000000e+00 2163.0
43 TraesCS6D01G201200 chr2B 85.574 915 109 18 1 899 558681923 558682830 0.000000e+00 937.0
44 TraesCS6D01G201200 chr2B 85.399 815 99 16 1 804 558676070 558676875 0.000000e+00 828.0
45 TraesCS6D01G201200 chr2B 97.917 48 1 0 937 984 91294135 91294182 3.220000e-12 84.2
46 TraesCS6D01G201200 chr6A 92.161 1365 81 16 3380 4720 610334531 610335893 0.000000e+00 1905.0
47 TraesCS6D01G201200 chr6A 87.319 552 49 10 907 1447 602711540 602710999 3.320000e-171 612.0
48 TraesCS6D01G201200 chr6A 88.806 134 9 3 1486 1613 602710701 602710568 5.200000e-35 159.0
49 TraesCS6D01G201200 chr5B 85.193 932 109 18 1 911 591957081 591956158 0.000000e+00 929.0
50 TraesCS6D01G201200 chr5B 83.186 452 45 13 1656 2100 681162493 681162066 7.880000e-103 385.0
51 TraesCS6D01G201200 chr5B 88.779 303 26 7 589 888 572030753 572031050 1.030000e-96 364.0
52 TraesCS6D01G201200 chr5B 89.286 84 7 1 888 969 93539577 93539660 2.470000e-18 104.0
53 TraesCS6D01G201200 chr4A 87.535 706 72 14 1 697 504677901 504677203 0.000000e+00 802.0
54 TraesCS6D01G201200 chr4A 87.007 431 45 8 1613 2042 628909550 628909970 4.550000e-130 475.0
55 TraesCS6D01G201200 chr3D 87.110 706 75 14 1 697 21770894 21770196 0.000000e+00 785.0
56 TraesCS6D01G201200 chr3D 97.552 286 6 1 4724 5009 73230624 73230340 5.840000e-134 488.0
57 TraesCS6D01G201200 chr3D 92.581 310 22 1 4415 4723 584378217 584377908 1.280000e-120 444.0
58 TraesCS6D01G201200 chr3D 91.961 311 23 2 4415 4723 21766205 21765895 7.720000e-118 435.0
59 TraesCS6D01G201200 chr3D 92.459 305 20 3 4420 4723 475487102 475486800 2.780000e-117 433.0
60 TraesCS6D01G201200 chr4B 90.240 584 52 5 4145 4725 585758775 585758194 0.000000e+00 758.0
61 TraesCS6D01G201200 chr3B 83.613 775 68 28 3978 4723 693703916 693703172 0.000000e+00 673.0
62 TraesCS6D01G201200 chr5D 92.903 310 19 3 4415 4723 511350298 511349991 9.910000e-122 448.0
63 TraesCS6D01G201200 chr5D 90.994 322 24 5 4420 4739 518840158 518839840 3.590000e-116 429.0
64 TraesCS6D01G201200 chr5D 80.926 540 47 28 1616 2140 539586501 539586003 4.740000e-100 375.0
65 TraesCS6D01G201200 chr7A 94.093 237 12 2 2505 2739 618430972 618431208 4.780000e-95 359.0
66 TraesCS6D01G201200 chr7A 93.506 231 9 5 2413 2639 575560596 575560824 6.230000e-89 339.0
67 TraesCS6D01G201200 chr1D 93.534 232 8 6 2413 2639 123237900 123238129 6.230000e-89 339.0
68 TraesCS6D01G201200 chr7B 91.339 127 5 3 1493 1613 634950847 634950721 8.640000e-38 169.0
69 TraesCS6D01G201200 chr7B 94.545 55 1 2 937 989 706374996 706374942 3.220000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G201200 chr6D 283300159 283305178 5019 True 9271.00 9271 100.0000 1 5020 1 chr6D.!!$R2 5019
1 TraesCS6D01G201200 chr6D 455890388 455891329 941 True 354.50 538 87.7595 907 1613 2 chr6D.!!$R3 706
2 TraesCS6D01G201200 chr1A 26844749 26848219 3470 False 5409.00 5409 94.8270 1252 4724 1 chr1A.!!$F1 3472
3 TraesCS6D01G201200 chr1A 50459251 50462728 3477 True 5341.00 5341 94.4380 1252 4727 1 chr1A.!!$R1 3475
4 TraesCS6D01G201200 chr3A 61628631 61632099 3468 False 5349.00 5349 94.5350 1252 4720 1 chr3A.!!$F1 3468
5 TraesCS6D01G201200 chr3A 693990864 693991776 912 True 946.00 946 85.6060 1 909 1 chr3A.!!$R1 908
6 TraesCS6D01G201200 chr2D 233137438 233139641 2203 True 1866.85 3679 94.5680 580 2780 2 chr2D.!!$R2 2200
7 TraesCS6D01G201200 chr7D 569717467 569719593 2126 True 2682.00 2682 89.8650 2421 4505 1 chr7D.!!$R4 2084
8 TraesCS6D01G201200 chr7D 142214667 142215368 701 True 821.00 821 87.9940 1 697 1 chr7D.!!$R1 696
9 TraesCS6D01G201200 chr6B 501357599 501359730 2131 True 2682.00 2682 89.8600 2421 4501 1 chr6B.!!$R2 2080
10 TraesCS6D01G201200 chr6B 505325571 505328089 2518 False 1858.50 2501 93.6245 1613 4069 2 chr6B.!!$F2 2456
11 TraesCS6D01G201200 chr6B 104303898 104304807 909 False 977.00 977 86.3040 1 905 1 chr6B.!!$F1 904
12 TraesCS6D01G201200 chr6B 16927334 16928228 894 True 970.00 970 86.5340 1 888 1 chr6B.!!$R1 887
13 TraesCS6D01G201200 chr6B 693098937 693099869 932 True 256.00 351 85.4460 1009 1615 2 chr6B.!!$R3 606
14 TraesCS6D01G201200 chr6B 693124562 693125518 956 True 212.00 261 86.8360 907 1613 2 chr6B.!!$R4 706
15 TraesCS6D01G201200 chr4D 189519833 189521953 2120 False 2665.00 2665 89.7820 2421 4505 1 chr4D.!!$F1 2084
16 TraesCS6D01G201200 chr4D 416250218 416251118 900 False 887.00 887 84.7800 3809 4720 1 chr4D.!!$F2 911
17 TraesCS6D01G201200 chr1B 76952846 76955443 2597 False 1807.50 2508 91.8940 1613 4148 2 chr1B.!!$F3 2535
18 TraesCS6D01G201200 chr1B 670718128 670718872 744 True 684.00 684 83.8710 3978 4723 1 chr1B.!!$R2 745
19 TraesCS6D01G201200 chr1B 529990753 529991334 581 False 619.00 619 86.2780 4153 4720 1 chr1B.!!$F2 567
20 TraesCS6D01G201200 chrUn 104826162 104827908 1746 False 2410.00 2410 91.8370 2421 4147 1 chrUn.!!$F4 1726
21 TraesCS6D01G201200 chr2B 64324746 64326476 1730 True 2163.00 2163 89.4800 2421 4147 1 chr2B.!!$R1 1726
22 TraesCS6D01G201200 chr2B 558681923 558682830 907 False 937.00 937 85.5740 1 899 1 chr2B.!!$F3 898
23 TraesCS6D01G201200 chr2B 558676070 558676875 805 False 828.00 828 85.3990 1 804 1 chr2B.!!$F2 803
24 TraesCS6D01G201200 chr6A 610334531 610335893 1362 False 1905.00 1905 92.1610 3380 4720 1 chr6A.!!$F1 1340
25 TraesCS6D01G201200 chr6A 602710568 602711540 972 True 385.50 612 88.0625 907 1613 2 chr6A.!!$R1 706
26 TraesCS6D01G201200 chr5B 591956158 591957081 923 True 929.00 929 85.1930 1 911 1 chr5B.!!$R1 910
27 TraesCS6D01G201200 chr4A 504677203 504677901 698 True 802.00 802 87.5350 1 697 1 chr4A.!!$R1 696
28 TraesCS6D01G201200 chr3D 21765895 21770894 4999 True 610.00 785 89.5355 1 4723 2 chr3D.!!$R4 4722
29 TraesCS6D01G201200 chr4B 585758194 585758775 581 True 758.00 758 90.2400 4145 4725 1 chr4B.!!$R1 580
30 TraesCS6D01G201200 chr3B 693703172 693703916 744 True 673.00 673 83.6130 3978 4723 1 chr3B.!!$R1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 75 0.678048 GACCCGCTTCCAGCTGAATT 60.678 55.000 17.39 0.0 39.6 2.17 F
664 701 1.229082 TAGCCTTCCTGTCACCGGT 60.229 57.895 0.00 0.0 0.0 5.28 F
833 2274 1.273886 GCTCCGTCTCTGTCTCCTTTT 59.726 52.381 0.00 0.0 0.0 2.27 F
1843 3920 1.441732 GGGCCGACGTTTTCTGTTGT 61.442 55.000 0.00 0.0 0.0 3.32 F
2986 5473 1.516892 CCACTCAGCTCTCTCCTGC 59.483 63.158 0.00 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1270 2768 1.623542 GCTGATAGGGTGGAACGGGT 61.624 60.000 0.00 0.0 38.12 5.28 R
2370 4453 0.599204 GGAACAGAGTGAAACGGCGA 60.599 55.000 16.62 0.0 45.86 5.54 R
2986 5473 3.684788 GGGTATTAGTAATGGATGCGCTG 59.315 47.826 9.73 0.0 0.00 5.18 R
3300 5861 0.813184 CACCTTGGTGCCTTGCATAG 59.187 55.000 6.88 0.0 41.91 2.23 R
4889 7699 0.034337 GGGTGCTAGTGTTTCCACGA 59.966 55.000 0.00 0.0 46.56 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 0.678048 GACCCGCTTCCAGCTGAATT 60.678 55.000 17.39 0.00 39.60 2.17
114 116 1.473278 ACGAGAGGTGGATCGAAACTC 59.527 52.381 4.32 4.32 41.40 3.01
126 128 3.269538 TCGAAACTCTTGACACCCAAA 57.730 42.857 0.00 0.00 33.76 3.28
154 156 9.669887 ATTTGGTCAATTGTGCATTAAATATGT 57.330 25.926 5.13 0.00 0.00 2.29
159 161 9.450807 GTCAATTGTGCATTAAATATGTCCTAC 57.549 33.333 5.13 0.00 0.00 3.18
495 510 2.219458 GATGACATGGCAGACATCCTG 58.781 52.381 7.63 1.22 45.67 3.86
546 565 3.192944 TCCATCCATCTGAAGAAACCCT 58.807 45.455 0.00 0.00 0.00 4.34
547 566 4.370776 TCCATCCATCTGAAGAAACCCTA 58.629 43.478 0.00 0.00 0.00 3.53
548 567 4.977739 TCCATCCATCTGAAGAAACCCTAT 59.022 41.667 0.00 0.00 0.00 2.57
549 568 5.072329 TCCATCCATCTGAAGAAACCCTATC 59.928 44.000 0.00 0.00 0.00 2.08
557 581 5.726308 TCTGAAGAAACCCTATCCAGATCAA 59.274 40.000 0.00 0.00 0.00 2.57
568 592 1.902508 TCCAGATCAACTCACTCACCC 59.097 52.381 0.00 0.00 0.00 4.61
664 701 1.229082 TAGCCTTCCTGTCACCGGT 60.229 57.895 0.00 0.00 0.00 5.28
792 1967 4.538283 CTCCGTCGCGCGTCTGAT 62.538 66.667 30.98 0.00 39.32 2.90
833 2274 1.273886 GCTCCGTCTCTGTCTCCTTTT 59.726 52.381 0.00 0.00 0.00 2.27
923 2366 2.347490 CCCGTAGCAGCCAGTGTT 59.653 61.111 0.00 0.00 0.00 3.32
978 2443 3.208922 TCCATCCATCCACTAGGGTTCTA 59.791 47.826 0.00 0.00 38.11 2.10
1091 2568 2.267681 GACCTCTTCGTCATCGGCGT 62.268 60.000 6.85 0.00 37.69 5.68
1283 2781 3.637273 GAGCACCCGTTCCACCCT 61.637 66.667 0.00 0.00 0.00 4.34
1670 3747 1.820519 ACAAAGTTCATGGCGCATCAT 59.179 42.857 10.83 0.46 0.00 2.45
1804 3881 3.845775 CAGTTTTGATTGTATTCGTGCGG 59.154 43.478 0.00 0.00 0.00 5.69
1843 3920 1.441732 GGGCCGACGTTTTCTGTTGT 61.442 55.000 0.00 0.00 0.00 3.32
2013 4090 3.826729 TGACTAGTCTAGCTGAAAGTGCA 59.173 43.478 23.01 0.00 35.30 4.57
2370 4453 6.006449 AGCAAAATAAAGTCTCCACACTCAT 58.994 36.000 0.00 0.00 0.00 2.90
2986 5473 1.516892 CCACTCAGCTCTCTCCTGC 59.483 63.158 0.00 0.00 0.00 4.85
3088 5580 6.149474 TGTTTCCTAGCTTAGCAATTGAGTTC 59.851 38.462 10.34 0.00 0.00 3.01
3350 5911 2.338015 AAGCGACGAACGGAGGCTA 61.338 57.895 0.00 0.00 42.83 3.93
3390 5951 0.617413 CCACCATTGTGAGCTCCTCT 59.383 55.000 12.15 0.00 45.76 3.69
3509 6070 1.098050 CAACTGCTGGTGCCTAATCC 58.902 55.000 0.00 0.00 38.71 3.01
3926 6579 4.566488 CCTGGAGGTTTGCAAATCTACTCT 60.566 45.833 30.17 14.47 30.99 3.24
3927 6580 4.985538 TGGAGGTTTGCAAATCTACTCTT 58.014 39.130 30.17 7.72 30.99 2.85
4291 7000 9.598517 AATTTGAGCAGTTTTGAATTTTCTGTA 57.401 25.926 0.00 0.00 0.00 2.74
4373 7118 1.203075 ACAATGTTAAAAGGCCCCGGA 60.203 47.619 0.73 0.00 0.00 5.14
4392 7138 6.295973 CCCCGGACCAAAAATAAATAAAAGGT 60.296 38.462 0.73 0.00 0.00 3.50
4475 7255 1.342819 GCTTGGCCCATGTAAAACACA 59.657 47.619 0.00 0.00 42.69 3.72
4479 7259 2.625790 TGGCCCATGTAAAACACAGAAC 59.374 45.455 0.00 0.00 41.51 3.01
4515 7296 0.739462 TTATCCACGTCAGCTTGCCG 60.739 55.000 0.00 0.00 0.00 5.69
4529 7311 1.549243 TTGCCGCACTGGATCCTACA 61.549 55.000 14.23 0.00 42.00 2.74
4592 7401 7.562454 AAGAATCAACGACCTTTTACAGAAA 57.438 32.000 0.00 0.00 0.00 2.52
4677 7487 6.314896 TCGCAAATGAAAAACAATGACCTTTT 59.685 30.769 0.00 0.00 0.00 2.27
4749 7559 6.431198 TCAAGAACAATAAAATCTACGGGC 57.569 37.500 0.00 0.00 0.00 6.13
4750 7560 5.941058 TCAAGAACAATAAAATCTACGGGCA 59.059 36.000 0.00 0.00 0.00 5.36
4751 7561 5.813080 AGAACAATAAAATCTACGGGCAC 57.187 39.130 0.00 0.00 0.00 5.01
4752 7562 5.250200 AGAACAATAAAATCTACGGGCACA 58.750 37.500 0.00 0.00 0.00 4.57
4753 7563 5.885912 AGAACAATAAAATCTACGGGCACAT 59.114 36.000 0.00 0.00 0.00 3.21
4754 7564 7.051623 AGAACAATAAAATCTACGGGCACATA 58.948 34.615 0.00 0.00 0.00 2.29
4755 7565 6.861065 ACAATAAAATCTACGGGCACATAG 57.139 37.500 0.00 0.00 0.00 2.23
4756 7566 6.354130 ACAATAAAATCTACGGGCACATAGT 58.646 36.000 0.00 0.00 0.00 2.12
4757 7567 6.826741 ACAATAAAATCTACGGGCACATAGTT 59.173 34.615 0.00 0.00 0.00 2.24
4758 7568 7.012044 ACAATAAAATCTACGGGCACATAGTTC 59.988 37.037 0.00 0.00 0.00 3.01
4759 7569 3.470645 AATCTACGGGCACATAGTTCC 57.529 47.619 0.00 0.00 0.00 3.62
4760 7570 2.154567 TCTACGGGCACATAGTTCCT 57.845 50.000 0.00 0.00 0.00 3.36
4761 7571 3.301794 TCTACGGGCACATAGTTCCTA 57.698 47.619 0.00 0.00 0.00 2.94
4762 7572 3.840991 TCTACGGGCACATAGTTCCTAT 58.159 45.455 0.00 0.00 0.00 2.57
4763 7573 4.220724 TCTACGGGCACATAGTTCCTATT 58.779 43.478 0.00 0.00 0.00 1.73
4764 7574 3.926058 ACGGGCACATAGTTCCTATTT 57.074 42.857 0.00 0.00 0.00 1.40
4765 7575 3.541632 ACGGGCACATAGTTCCTATTTG 58.458 45.455 0.00 0.00 30.12 2.32
4766 7576 2.290641 CGGGCACATAGTTCCTATTTGC 59.709 50.000 11.94 11.94 44.54 3.68
4767 7577 3.287222 GGGCACATAGTTCCTATTTGCA 58.713 45.455 18.72 0.00 46.05 4.08
4768 7578 3.699038 GGGCACATAGTTCCTATTTGCAA 59.301 43.478 18.72 0.00 46.05 4.08
4769 7579 4.440112 GGGCACATAGTTCCTATTTGCAAC 60.440 45.833 18.72 10.58 46.05 4.17
4770 7580 4.157656 GGCACATAGTTCCTATTTGCAACA 59.842 41.667 18.72 0.00 46.05 3.33
4771 7581 5.336372 GGCACATAGTTCCTATTTGCAACAA 60.336 40.000 18.72 0.00 46.05 2.83
4772 7582 6.332630 GCACATAGTTCCTATTTGCAACAAT 58.667 36.000 14.38 0.00 44.61 2.71
4773 7583 7.416213 GGCACATAGTTCCTATTTGCAACAATA 60.416 37.037 18.72 0.00 46.05 1.90
4774 7584 7.973388 GCACATAGTTCCTATTTGCAACAATAA 59.027 33.333 14.38 0.00 44.61 1.40
4775 7585 9.507280 CACATAGTTCCTATTTGCAACAATAAG 57.493 33.333 0.00 0.00 0.00 1.73
4776 7586 9.461312 ACATAGTTCCTATTTGCAACAATAAGA 57.539 29.630 0.00 0.00 0.00 2.10
4779 7589 8.177119 AGTTCCTATTTGCAACAATAAGAACA 57.823 30.769 22.72 0.46 35.95 3.18
4780 7590 8.806146 AGTTCCTATTTGCAACAATAAGAACAT 58.194 29.630 22.72 12.45 35.95 2.71
4781 7591 9.076596 GTTCCTATTTGCAACAATAAGAACATC 57.923 33.333 19.03 2.53 34.69 3.06
4782 7592 8.347004 TCCTATTTGCAACAATAAGAACATCA 57.653 30.769 0.00 0.00 0.00 3.07
4783 7593 8.970020 TCCTATTTGCAACAATAAGAACATCAT 58.030 29.630 0.00 0.00 0.00 2.45
4784 7594 9.590451 CCTATTTGCAACAATAAGAACATCATT 57.410 29.630 0.00 0.00 0.00 2.57
4799 7609 8.930846 AGAACATCATTAATTCTTCCCATAGG 57.069 34.615 0.00 0.00 28.03 2.57
4800 7610 8.506083 AGAACATCATTAATTCTTCCCATAGGT 58.494 33.333 0.00 0.00 28.03 3.08
4801 7611 9.136323 GAACATCATTAATTCTTCCCATAGGTT 57.864 33.333 0.00 0.00 0.00 3.50
4802 7612 9.492730 AACATCATTAATTCTTCCCATAGGTTT 57.507 29.630 0.00 0.00 0.00 3.27
4803 7613 9.136323 ACATCATTAATTCTTCCCATAGGTTTC 57.864 33.333 0.00 0.00 0.00 2.78
4804 7614 9.359653 CATCATTAATTCTTCCCATAGGTTTCT 57.640 33.333 0.00 0.00 0.00 2.52
4805 7615 9.942526 ATCATTAATTCTTCCCATAGGTTTCTT 57.057 29.630 0.00 0.00 0.00 2.52
4812 7622 9.853177 ATTCTTCCCATAGGTTTCTTAATAGTG 57.147 33.333 0.00 0.00 0.00 2.74
4813 7623 7.802117 TCTTCCCATAGGTTTCTTAATAGTGG 58.198 38.462 0.00 0.00 0.00 4.00
4814 7624 7.626084 TCTTCCCATAGGTTTCTTAATAGTGGA 59.374 37.037 0.00 0.00 0.00 4.02
4815 7625 7.758820 TCCCATAGGTTTCTTAATAGTGGAA 57.241 36.000 0.00 0.00 0.00 3.53
4816 7626 8.344939 TCCCATAGGTTTCTTAATAGTGGAAT 57.655 34.615 0.00 0.00 0.00 3.01
4817 7627 8.437575 TCCCATAGGTTTCTTAATAGTGGAATC 58.562 37.037 0.00 0.00 0.00 2.52
4818 7628 7.665974 CCCATAGGTTTCTTAATAGTGGAATCC 59.334 40.741 0.00 0.00 32.22 3.01
4819 7629 7.387948 CCATAGGTTTCTTAATAGTGGAATCCG 59.612 40.741 0.00 0.00 35.31 4.18
4820 7630 5.123936 AGGTTTCTTAATAGTGGAATCCGC 58.876 41.667 4.34 4.34 35.31 5.54
4821 7631 4.879545 GGTTTCTTAATAGTGGAATCCGCA 59.120 41.667 15.92 1.58 36.32 5.69
4822 7632 5.355910 GGTTTCTTAATAGTGGAATCCGCAA 59.644 40.000 15.92 0.00 36.32 4.85
4823 7633 6.458342 GGTTTCTTAATAGTGGAATCCGCAAG 60.458 42.308 15.92 9.64 36.32 4.01
4838 7648 3.347958 CGCAAGGTGCAAGTTTAAAGA 57.652 42.857 0.61 0.00 45.36 2.52
4839 7649 3.300009 CGCAAGGTGCAAGTTTAAAGAG 58.700 45.455 0.61 0.00 45.36 2.85
4840 7650 3.052745 GCAAGGTGCAAGTTTAAAGAGC 58.947 45.455 0.00 0.00 44.26 4.09
4841 7651 3.490761 GCAAGGTGCAAGTTTAAAGAGCA 60.491 43.478 5.35 5.35 44.26 4.26
4842 7652 4.681744 CAAGGTGCAAGTTTAAAGAGCAA 58.318 39.130 9.82 0.00 36.91 3.91
4843 7653 5.291971 CAAGGTGCAAGTTTAAAGAGCAAT 58.708 37.500 9.82 1.85 36.91 3.56
4844 7654 5.126396 AGGTGCAAGTTTAAAGAGCAATC 57.874 39.130 9.82 6.76 36.91 2.67
4845 7655 4.584325 AGGTGCAAGTTTAAAGAGCAATCA 59.416 37.500 9.82 0.00 36.91 2.57
4846 7656 5.244626 AGGTGCAAGTTTAAAGAGCAATCAT 59.755 36.000 9.82 0.00 36.91 2.45
4847 7657 5.574443 GGTGCAAGTTTAAAGAGCAATCATC 59.426 40.000 9.82 0.31 36.91 2.92
4848 7658 6.151691 GTGCAAGTTTAAAGAGCAATCATCA 58.848 36.000 9.82 0.00 36.91 3.07
4849 7659 6.642131 GTGCAAGTTTAAAGAGCAATCATCAA 59.358 34.615 9.82 0.00 36.91 2.57
4850 7660 7.169645 GTGCAAGTTTAAAGAGCAATCATCAAA 59.830 33.333 9.82 0.00 36.91 2.69
4851 7661 7.710044 TGCAAGTTTAAAGAGCAATCATCAAAA 59.290 29.630 6.66 0.00 31.42 2.44
4852 7662 8.715088 GCAAGTTTAAAGAGCAATCATCAAAAT 58.285 29.630 0.00 0.00 0.00 1.82
4854 7664 9.985730 AAGTTTAAAGAGCAATCATCAAAATCA 57.014 25.926 0.00 0.00 0.00 2.57
4855 7665 9.415544 AGTTTAAAGAGCAATCATCAAAATCAC 57.584 29.630 0.00 0.00 0.00 3.06
4856 7666 8.368126 GTTTAAAGAGCAATCATCAAAATCACG 58.632 33.333 0.00 0.00 0.00 4.35
4857 7667 4.627611 AGAGCAATCATCAAAATCACGG 57.372 40.909 0.00 0.00 0.00 4.94
4858 7668 4.264253 AGAGCAATCATCAAAATCACGGA 58.736 39.130 0.00 0.00 0.00 4.69
4859 7669 4.701651 AGAGCAATCATCAAAATCACGGAA 59.298 37.500 0.00 0.00 0.00 4.30
4860 7670 5.183713 AGAGCAATCATCAAAATCACGGAAA 59.816 36.000 0.00 0.00 0.00 3.13
4861 7671 5.163513 AGCAATCATCAAAATCACGGAAAC 58.836 37.500 0.00 0.00 0.00 2.78
4862 7672 4.327087 GCAATCATCAAAATCACGGAAACC 59.673 41.667 0.00 0.00 0.00 3.27
4863 7673 5.713025 CAATCATCAAAATCACGGAAACCT 58.287 37.500 0.00 0.00 0.00 3.50
4864 7674 6.624861 GCAATCATCAAAATCACGGAAACCTA 60.625 38.462 0.00 0.00 0.00 3.08
4865 7675 6.683974 ATCATCAAAATCACGGAAACCTAG 57.316 37.500 0.00 0.00 0.00 3.02
4866 7676 4.394920 TCATCAAAATCACGGAAACCTAGC 59.605 41.667 0.00 0.00 0.00 3.42
4867 7677 3.745799 TCAAAATCACGGAAACCTAGCA 58.254 40.909 0.00 0.00 0.00 3.49
4868 7678 4.138290 TCAAAATCACGGAAACCTAGCAA 58.862 39.130 0.00 0.00 0.00 3.91
4869 7679 4.580995 TCAAAATCACGGAAACCTAGCAAA 59.419 37.500 0.00 0.00 0.00 3.68
4870 7680 5.242838 TCAAAATCACGGAAACCTAGCAAAT 59.757 36.000 0.00 0.00 0.00 2.32
4871 7681 4.965119 AATCACGGAAACCTAGCAAATC 57.035 40.909 0.00 0.00 0.00 2.17
4872 7682 3.410631 TCACGGAAACCTAGCAAATCA 57.589 42.857 0.00 0.00 0.00 2.57
4873 7683 3.071479 TCACGGAAACCTAGCAAATCAC 58.929 45.455 0.00 0.00 0.00 3.06
4874 7684 2.811431 CACGGAAACCTAGCAAATCACA 59.189 45.455 0.00 0.00 0.00 3.58
4875 7685 2.812011 ACGGAAACCTAGCAAATCACAC 59.188 45.455 0.00 0.00 0.00 3.82
4876 7686 2.811431 CGGAAACCTAGCAAATCACACA 59.189 45.455 0.00 0.00 0.00 3.72
4877 7687 3.252215 CGGAAACCTAGCAAATCACACAA 59.748 43.478 0.00 0.00 0.00 3.33
4878 7688 4.261405 CGGAAACCTAGCAAATCACACAAA 60.261 41.667 0.00 0.00 0.00 2.83
4879 7689 5.222631 GGAAACCTAGCAAATCACACAAAG 58.777 41.667 0.00 0.00 0.00 2.77
4880 7690 5.221244 GGAAACCTAGCAAATCACACAAAGT 60.221 40.000 0.00 0.00 0.00 2.66
4881 7691 5.852282 AACCTAGCAAATCACACAAAGTT 57.148 34.783 0.00 0.00 0.00 2.66
4882 7692 5.852282 ACCTAGCAAATCACACAAAGTTT 57.148 34.783 0.00 0.00 0.00 2.66
4883 7693 6.220726 ACCTAGCAAATCACACAAAGTTTT 57.779 33.333 0.00 0.00 0.00 2.43
4884 7694 6.639563 ACCTAGCAAATCACACAAAGTTTTT 58.360 32.000 0.00 0.00 0.00 1.94
4885 7695 6.534793 ACCTAGCAAATCACACAAAGTTTTTG 59.465 34.615 0.14 0.14 35.42 2.44
4886 7696 5.799681 AGCAAATCACACAAAGTTTTTGG 57.200 34.783 6.70 0.00 34.03 3.28
4887 7697 5.486526 AGCAAATCACACAAAGTTTTTGGA 58.513 33.333 6.70 2.00 34.03 3.53
4888 7698 5.936956 AGCAAATCACACAAAGTTTTTGGAA 59.063 32.000 6.70 0.00 34.03 3.53
4889 7699 6.598850 AGCAAATCACACAAAGTTTTTGGAAT 59.401 30.769 6.70 0.00 34.03 3.01
4890 7700 6.906678 GCAAATCACACAAAGTTTTTGGAATC 59.093 34.615 6.70 0.00 34.03 2.52
4891 7701 6.826893 AATCACACAAAGTTTTTGGAATCG 57.173 33.333 6.70 0.00 0.00 3.34
4892 7702 5.317733 TCACACAAAGTTTTTGGAATCGT 57.682 34.783 6.70 0.00 0.00 3.73
4893 7703 5.098893 TCACACAAAGTTTTTGGAATCGTG 58.901 37.500 6.70 2.47 0.00 4.35
4894 7704 4.267452 CACACAAAGTTTTTGGAATCGTGG 59.733 41.667 6.70 0.00 0.00 4.94
4895 7705 4.158764 ACACAAAGTTTTTGGAATCGTGGA 59.841 37.500 6.70 0.00 0.00 4.02
4896 7706 5.105752 CACAAAGTTTTTGGAATCGTGGAA 58.894 37.500 6.51 0.00 0.00 3.53
4897 7707 5.578727 CACAAAGTTTTTGGAATCGTGGAAA 59.421 36.000 6.51 0.00 0.00 3.13
4898 7708 5.579119 ACAAAGTTTTTGGAATCGTGGAAAC 59.421 36.000 6.51 0.00 0.00 2.78
4899 7709 4.993029 AGTTTTTGGAATCGTGGAAACA 57.007 36.364 0.00 0.00 38.70 2.83
4911 7721 2.738587 TGGAAACACTAGCACCCAAA 57.261 45.000 0.00 0.00 33.40 3.28
4912 7722 3.237268 TGGAAACACTAGCACCCAAAT 57.763 42.857 0.00 0.00 33.40 2.32
4913 7723 3.153919 TGGAAACACTAGCACCCAAATC 58.846 45.455 0.00 0.00 33.40 2.17
4914 7724 3.153919 GGAAACACTAGCACCCAAATCA 58.846 45.455 0.00 0.00 0.00 2.57
4915 7725 3.057526 GGAAACACTAGCACCCAAATCAC 60.058 47.826 0.00 0.00 0.00 3.06
4916 7726 2.949177 ACACTAGCACCCAAATCACA 57.051 45.000 0.00 0.00 0.00 3.58
4917 7727 2.504367 ACACTAGCACCCAAATCACAC 58.496 47.619 0.00 0.00 0.00 3.82
4918 7728 2.158682 ACACTAGCACCCAAATCACACA 60.159 45.455 0.00 0.00 0.00 3.72
4919 7729 2.884012 CACTAGCACCCAAATCACACAA 59.116 45.455 0.00 0.00 0.00 3.33
4920 7730 3.317711 CACTAGCACCCAAATCACACAAA 59.682 43.478 0.00 0.00 0.00 2.83
4921 7731 3.569701 ACTAGCACCCAAATCACACAAAG 59.430 43.478 0.00 0.00 0.00 2.77
4922 7732 1.069049 AGCACCCAAATCACACAAAGC 59.931 47.619 0.00 0.00 0.00 3.51
4923 7733 1.202510 GCACCCAAATCACACAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
4924 7734 2.548493 GCACCCAAATCACACAAAGCAT 60.548 45.455 0.00 0.00 0.00 3.79
4925 7735 3.305950 GCACCCAAATCACACAAAGCATA 60.306 43.478 0.00 0.00 0.00 3.14
4926 7736 4.487948 CACCCAAATCACACAAAGCATAG 58.512 43.478 0.00 0.00 0.00 2.23
4927 7737 3.056607 ACCCAAATCACACAAAGCATAGC 60.057 43.478 0.00 0.00 0.00 2.97
4928 7738 3.056678 CCCAAATCACACAAAGCATAGCA 60.057 43.478 0.00 0.00 0.00 3.49
4929 7739 4.382254 CCCAAATCACACAAAGCATAGCAT 60.382 41.667 0.00 0.00 0.00 3.79
4930 7740 5.172934 CCAAATCACACAAAGCATAGCATT 58.827 37.500 0.00 0.00 0.00 3.56
4931 7741 5.290158 CCAAATCACACAAAGCATAGCATTC 59.710 40.000 0.00 0.00 0.00 2.67
4932 7742 5.648178 AATCACACAAAGCATAGCATTCA 57.352 34.783 0.00 0.00 0.00 2.57
4933 7743 5.847111 ATCACACAAAGCATAGCATTCAT 57.153 34.783 0.00 0.00 0.00 2.57
4934 7744 4.989044 TCACACAAAGCATAGCATTCATG 58.011 39.130 0.00 0.00 0.00 3.07
4935 7745 4.701171 TCACACAAAGCATAGCATTCATGA 59.299 37.500 0.00 0.00 0.00 3.07
4936 7746 5.358725 TCACACAAAGCATAGCATTCATGAT 59.641 36.000 0.00 0.00 0.00 2.45
4937 7747 5.685954 CACACAAAGCATAGCATTCATGATC 59.314 40.000 0.00 0.00 0.00 2.92
4938 7748 5.593095 ACACAAAGCATAGCATTCATGATCT 59.407 36.000 0.00 0.00 0.00 2.75
4939 7749 6.096423 ACACAAAGCATAGCATTCATGATCTT 59.904 34.615 0.00 0.00 0.00 2.40
4940 7750 6.978659 CACAAAGCATAGCATTCATGATCTTT 59.021 34.615 0.00 0.00 0.00 2.52
4941 7751 8.132995 CACAAAGCATAGCATTCATGATCTTTA 58.867 33.333 0.00 0.00 0.00 1.85
4942 7752 8.689061 ACAAAGCATAGCATTCATGATCTTTAA 58.311 29.630 0.00 0.00 0.00 1.52
4943 7753 9.692749 CAAAGCATAGCATTCATGATCTTTAAT 57.307 29.630 0.00 0.00 0.00 1.40
4973 7783 9.628500 AATTTTAATAGTAGGTTCCCACTCATC 57.372 33.333 0.00 0.00 0.00 2.92
4974 7784 7.743116 TTTAATAGTAGGTTCCCACTCATCA 57.257 36.000 0.00 0.00 0.00 3.07
4975 7785 7.931015 TTAATAGTAGGTTCCCACTCATCAT 57.069 36.000 0.00 0.00 0.00 2.45
4976 7786 9.442062 TTTAATAGTAGGTTCCCACTCATCATA 57.558 33.333 0.00 0.00 0.00 2.15
4977 7787 7.931015 AATAGTAGGTTCCCACTCATCATAA 57.069 36.000 0.00 0.00 0.00 1.90
4978 7788 7.931015 ATAGTAGGTTCCCACTCATCATAAA 57.069 36.000 0.00 0.00 0.00 1.40
4979 7789 6.240549 AGTAGGTTCCCACTCATCATAAAG 57.759 41.667 0.00 0.00 0.00 1.85
4980 7790 5.726793 AGTAGGTTCCCACTCATCATAAAGT 59.273 40.000 0.00 0.00 0.00 2.66
4981 7791 5.520748 AGGTTCCCACTCATCATAAAGTT 57.479 39.130 0.00 0.00 0.00 2.66
4982 7792 5.892348 AGGTTCCCACTCATCATAAAGTTT 58.108 37.500 0.00 0.00 0.00 2.66
4983 7793 6.314917 AGGTTCCCACTCATCATAAAGTTTT 58.685 36.000 0.00 0.00 0.00 2.43
4984 7794 6.434340 AGGTTCCCACTCATCATAAAGTTTTC 59.566 38.462 0.00 0.00 0.00 2.29
4985 7795 6.434340 GGTTCCCACTCATCATAAAGTTTTCT 59.566 38.462 0.00 0.00 0.00 2.52
4986 7796 7.610305 GGTTCCCACTCATCATAAAGTTTTCTA 59.390 37.037 0.00 0.00 0.00 2.10
4987 7797 8.669243 GTTCCCACTCATCATAAAGTTTTCTAG 58.331 37.037 0.00 0.00 0.00 2.43
4988 7798 7.338710 TCCCACTCATCATAAAGTTTTCTAGG 58.661 38.462 0.00 0.00 0.00 3.02
4989 7799 6.543831 CCCACTCATCATAAAGTTTTCTAGGG 59.456 42.308 0.00 0.00 0.00 3.53
4990 7800 7.338710 CCACTCATCATAAAGTTTTCTAGGGA 58.661 38.462 0.00 0.00 0.00 4.20
4991 7801 7.995488 CCACTCATCATAAAGTTTTCTAGGGAT 59.005 37.037 0.00 0.00 0.00 3.85
4998 7808 8.643324 TCATAAAGTTTTCTAGGGATAGAGAGC 58.357 37.037 0.00 0.00 0.00 4.09
4999 7809 6.875972 AAAGTTTTCTAGGGATAGAGAGCA 57.124 37.500 0.00 0.00 0.00 4.26
5000 7810 5.862678 AGTTTTCTAGGGATAGAGAGCAC 57.137 43.478 0.00 0.00 0.00 4.40
5001 7811 4.651962 AGTTTTCTAGGGATAGAGAGCACC 59.348 45.833 0.00 0.00 0.00 5.01
5002 7812 2.982339 TCTAGGGATAGAGAGCACCC 57.018 55.000 0.00 0.00 42.36 4.61
5003 7813 2.144450 TCTAGGGATAGAGAGCACCCA 58.856 52.381 0.00 0.00 44.25 4.51
5004 7814 2.518407 TCTAGGGATAGAGAGCACCCAA 59.482 50.000 0.00 0.00 44.25 4.12
5005 7815 2.270434 AGGGATAGAGAGCACCCAAA 57.730 50.000 0.00 0.00 44.25 3.28
5006 7816 2.781667 AGGGATAGAGAGCACCCAAAT 58.218 47.619 0.00 0.00 44.25 2.32
5007 7817 2.708325 AGGGATAGAGAGCACCCAAATC 59.292 50.000 0.00 0.00 44.25 2.17
5008 7818 2.439507 GGGATAGAGAGCACCCAAATCA 59.560 50.000 0.00 0.00 41.72 2.57
5009 7819 3.471680 GGATAGAGAGCACCCAAATCAC 58.528 50.000 0.00 0.00 0.00 3.06
5010 7820 3.118261 GGATAGAGAGCACCCAAATCACA 60.118 47.826 0.00 0.00 0.00 3.58
5011 7821 2.191128 AGAGAGCACCCAAATCACAC 57.809 50.000 0.00 0.00 0.00 3.82
5012 7822 1.421268 AGAGAGCACCCAAATCACACA 59.579 47.619 0.00 0.00 0.00 3.72
5013 7823 2.158623 AGAGAGCACCCAAATCACACAA 60.159 45.455 0.00 0.00 0.00 3.33
5014 7824 2.622942 GAGAGCACCCAAATCACACAAA 59.377 45.455 0.00 0.00 0.00 2.83
5015 7825 2.624838 AGAGCACCCAAATCACACAAAG 59.375 45.455 0.00 0.00 0.00 2.77
5016 7826 1.069049 AGCACCCAAATCACACAAAGC 59.931 47.619 0.00 0.00 0.00 3.51
5017 7827 1.202510 GCACCCAAATCACACAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
5018 7828 2.548493 GCACCCAAATCACACAAAGCAT 60.548 45.455 0.00 0.00 0.00 3.79
5019 7829 3.305950 GCACCCAAATCACACAAAGCATA 60.306 43.478 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 6.922957 CAGCTGCCACATAGTTTTCTTTTTAA 59.077 34.615 0.00 0.00 0.00 1.52
21 23 2.229784 GCAGCTGCCACATAGTTTTCTT 59.770 45.455 28.76 0.00 34.31 2.52
24 26 1.542915 CTGCAGCTGCCACATAGTTTT 59.457 47.619 34.64 0.00 41.18 2.43
33 35 1.042229 AATTTGAACTGCAGCTGCCA 58.958 45.000 34.64 22.44 41.18 4.92
73 75 4.116238 GTGAAAAAGACAAATTTCCGCCA 58.884 39.130 0.00 0.00 35.23 5.69
126 128 7.982761 ATTTAATGCACAATTGACCAAATGT 57.017 28.000 13.59 0.00 35.00 2.71
166 168 7.987458 TGCAAAAATAGACCACACCATTTTTAA 59.013 29.630 0.00 0.00 38.08 1.52
175 177 6.843069 ATTTGTTGCAAAAATAGACCACAC 57.157 33.333 2.11 0.00 0.00 3.82
227 231 8.774546 TCATTTTCCATTTATAGTGCCCAATA 57.225 30.769 0.00 0.00 0.00 1.90
228 232 7.673641 TCATTTTCCATTTATAGTGCCCAAT 57.326 32.000 0.00 0.00 0.00 3.16
238 243 9.064706 TGCACACAAAAATCATTTTCCATTTAT 57.935 25.926 0.00 0.00 36.62 1.40
239 245 8.442632 TGCACACAAAAATCATTTTCCATTTA 57.557 26.923 0.00 0.00 36.62 1.40
245 254 6.200100 TGCATTGCACACAAAAATCATTTTC 58.800 32.000 7.38 0.00 39.77 2.29
355 365 5.815740 CGGGTAAACACTCAACATATTAGCT 59.184 40.000 0.00 0.00 0.00 3.32
460 475 0.455815 TCATCGATCCGTGTGACAGG 59.544 55.000 0.00 0.00 0.00 4.00
495 510 2.751806 GGGATTGCTAGCAATAGATGGC 59.248 50.000 36.43 24.27 45.50 4.40
501 516 3.498481 GGATGGTGGGATTGCTAGCAATA 60.498 47.826 36.43 23.18 45.50 1.90
546 565 3.706594 GGGTGAGTGAGTTGATCTGGATA 59.293 47.826 0.00 0.00 0.00 2.59
547 566 2.503356 GGGTGAGTGAGTTGATCTGGAT 59.497 50.000 0.00 0.00 0.00 3.41
548 567 1.902508 GGGTGAGTGAGTTGATCTGGA 59.097 52.381 0.00 0.00 0.00 3.86
549 568 1.065854 GGGGTGAGTGAGTTGATCTGG 60.066 57.143 0.00 0.00 0.00 3.86
557 581 1.079438 GGAGGAGGGGTGAGTGAGT 59.921 63.158 0.00 0.00 0.00 3.41
568 592 2.736826 GCGGAAGGAAGGGAGGAGG 61.737 68.421 0.00 0.00 0.00 4.30
792 1967 2.189257 CGCGGACATGGATGGGAA 59.811 61.111 0.00 0.00 0.00 3.97
833 2274 2.606213 TGCGGATCACCTCCCACA 60.606 61.111 0.00 0.00 41.49 4.17
1270 2768 1.623542 GCTGATAGGGTGGAACGGGT 61.624 60.000 0.00 0.00 38.12 5.28
1670 3747 4.202315 ACAACATGGTGCAGACTGTAACTA 60.202 41.667 11.63 4.76 0.00 2.24
1804 3881 4.485163 CCCATGTTAACTTGTTTGCTAGC 58.515 43.478 17.43 8.10 0.00 3.42
1843 3920 2.543802 CGACGATCCGCTCCAGCTA 61.544 63.158 0.00 0.00 39.32 3.32
2013 4090 2.677037 GCTACCGCAACTTCAGGTACAT 60.677 50.000 0.00 0.00 39.31 2.29
2370 4453 0.599204 GGAACAGAGTGAAACGGCGA 60.599 55.000 16.62 0.00 45.86 5.54
2986 5473 3.684788 GGGTATTAGTAATGGATGCGCTG 59.315 47.826 9.73 0.00 0.00 5.18
3088 5580 9.817365 GTGCTCATACTTATATTACATTGCTTG 57.183 33.333 0.00 0.00 0.00 4.01
3300 5861 0.813184 CACCTTGGTGCCTTGCATAG 59.187 55.000 6.88 0.00 41.91 2.23
3350 5911 2.665649 TTGTGTAGCCGATGTCGAAT 57.334 45.000 3.62 0.00 43.02 3.34
3390 5951 5.439721 AGCATGGTTGTATCATAGCAAAGA 58.560 37.500 0.00 0.00 0.00 2.52
3509 6070 3.181487 ACCAGCAGCAAATAAAATAGCCG 60.181 43.478 0.00 0.00 0.00 5.52
3539 6100 1.191535 ACCAGCGGCACTCTAATACA 58.808 50.000 1.45 0.00 0.00 2.29
3776 6342 3.126514 GTGATGCATCTTCACAGAACCAG 59.873 47.826 26.32 0.00 42.43 4.00
3926 6579 9.411801 CAGCATTAGAGTCGCTATTATTCTTAA 57.588 33.333 0.00 0.00 33.82 1.85
3927 6580 8.029522 CCAGCATTAGAGTCGCTATTATTCTTA 58.970 37.037 0.00 0.00 33.82 2.10
4291 7000 0.105760 TCACACATTGGGCCCACTTT 60.106 50.000 28.70 10.16 0.00 2.66
4475 7255 1.201429 AATCAGCCCGGTCCAGTTCT 61.201 55.000 0.00 0.00 0.00 3.01
4479 7259 0.830648 TAAGAATCAGCCCGGTCCAG 59.169 55.000 0.00 0.00 0.00 3.86
4515 7296 1.765314 AGACCATGTAGGATCCAGTGC 59.235 52.381 15.82 0.00 41.22 4.40
4517 7298 2.402564 CCAGACCATGTAGGATCCAGT 58.597 52.381 15.82 0.77 41.22 4.00
4529 7311 2.551856 TAGCAGCCTCCCCAGACCAT 62.552 60.000 0.00 0.00 0.00 3.55
4573 7371 5.978934 GACTTTCTGTAAAAGGTCGTTGA 57.021 39.130 2.91 0.00 0.00 3.18
4615 7424 1.321474 CAGAAGGTCAAAAGCTGGCA 58.679 50.000 0.00 0.00 32.35 4.92
4677 7487 0.689745 ACCCTCACTATTGGCCGCTA 60.690 55.000 0.00 0.00 0.00 4.26
4727 7537 6.027749 GTGCCCGTAGATTTTATTGTTCTTG 58.972 40.000 0.00 0.00 0.00 3.02
4728 7538 5.708230 TGTGCCCGTAGATTTTATTGTTCTT 59.292 36.000 0.00 0.00 0.00 2.52
4729 7539 5.250200 TGTGCCCGTAGATTTTATTGTTCT 58.750 37.500 0.00 0.00 0.00 3.01
4730 7540 5.554822 TGTGCCCGTAGATTTTATTGTTC 57.445 39.130 0.00 0.00 0.00 3.18
4731 7541 6.826741 ACTATGTGCCCGTAGATTTTATTGTT 59.173 34.615 2.15 0.00 34.75 2.83
4732 7542 6.354130 ACTATGTGCCCGTAGATTTTATTGT 58.646 36.000 2.15 0.00 34.75 2.71
4733 7543 6.861065 ACTATGTGCCCGTAGATTTTATTG 57.139 37.500 2.15 0.00 34.75 1.90
4734 7544 6.485648 GGAACTATGTGCCCGTAGATTTTATT 59.514 38.462 2.15 0.00 34.75 1.40
4735 7545 5.995897 GGAACTATGTGCCCGTAGATTTTAT 59.004 40.000 2.15 0.00 34.75 1.40
4736 7546 5.129815 AGGAACTATGTGCCCGTAGATTTTA 59.870 40.000 2.15 0.00 36.02 1.52
4737 7547 4.080526 AGGAACTATGTGCCCGTAGATTTT 60.081 41.667 2.15 0.00 36.02 1.82
4738 7548 3.454812 AGGAACTATGTGCCCGTAGATTT 59.545 43.478 2.15 0.00 36.02 2.17
4739 7549 3.039011 AGGAACTATGTGCCCGTAGATT 58.961 45.455 2.15 0.00 36.02 2.40
4740 7550 2.679082 AGGAACTATGTGCCCGTAGAT 58.321 47.619 2.15 0.00 36.02 1.98
4741 7551 2.154567 AGGAACTATGTGCCCGTAGA 57.845 50.000 2.15 0.00 36.02 2.59
4756 7566 8.801299 TGATGTTCTTATTGTTGCAAATAGGAA 58.199 29.630 0.00 6.17 36.39 3.36
4757 7567 8.347004 TGATGTTCTTATTGTTGCAAATAGGA 57.653 30.769 0.00 0.00 0.00 2.94
4758 7568 9.590451 AATGATGTTCTTATTGTTGCAAATAGG 57.410 29.630 0.00 0.00 0.00 2.57
4773 7583 9.359653 CCTATGGGAAGAATTAATGATGTTCTT 57.640 33.333 1.54 1.54 42.94 2.52
4774 7584 8.506083 ACCTATGGGAAGAATTAATGATGTTCT 58.494 33.333 0.25 0.00 36.25 3.01
4775 7585 8.697507 ACCTATGGGAAGAATTAATGATGTTC 57.302 34.615 0.25 0.00 36.25 3.18
4776 7586 9.492730 AAACCTATGGGAAGAATTAATGATGTT 57.507 29.630 0.25 0.00 36.25 2.71
4777 7587 9.136323 GAAACCTATGGGAAGAATTAATGATGT 57.864 33.333 0.25 0.00 36.25 3.06
4778 7588 9.359653 AGAAACCTATGGGAAGAATTAATGATG 57.640 33.333 0.25 0.00 36.25 3.07
4779 7589 9.942526 AAGAAACCTATGGGAAGAATTAATGAT 57.057 29.630 0.25 0.00 36.25 2.45
4786 7596 9.853177 CACTATTAAGAAACCTATGGGAAGAAT 57.147 33.333 0.25 0.00 36.25 2.40
4787 7597 8.272173 CCACTATTAAGAAACCTATGGGAAGAA 58.728 37.037 0.25 0.00 36.25 2.52
4788 7598 7.626084 TCCACTATTAAGAAACCTATGGGAAGA 59.374 37.037 0.25 0.00 36.25 2.87
4789 7599 7.802117 TCCACTATTAAGAAACCTATGGGAAG 58.198 38.462 0.25 0.00 36.25 3.46
4790 7600 7.758820 TCCACTATTAAGAAACCTATGGGAA 57.241 36.000 0.25 0.00 36.25 3.97
4791 7601 7.758820 TTCCACTATTAAGAAACCTATGGGA 57.241 36.000 0.25 0.00 36.25 4.37
4792 7602 7.665974 GGATTCCACTATTAAGAAACCTATGGG 59.334 40.741 0.00 0.00 31.65 4.00
4793 7603 7.387948 CGGATTCCACTATTAAGAAACCTATGG 59.612 40.741 3.09 0.00 32.04 2.74
4794 7604 7.095187 GCGGATTCCACTATTAAGAAACCTATG 60.095 40.741 3.09 0.00 32.04 2.23
4795 7605 6.935208 GCGGATTCCACTATTAAGAAACCTAT 59.065 38.462 3.09 0.00 32.04 2.57
4796 7606 6.126997 TGCGGATTCCACTATTAAGAAACCTA 60.127 38.462 3.09 0.00 32.04 3.08
4797 7607 5.123936 GCGGATTCCACTATTAAGAAACCT 58.876 41.667 3.09 0.00 32.04 3.50
4798 7608 4.879545 TGCGGATTCCACTATTAAGAAACC 59.120 41.667 3.09 0.00 0.00 3.27
4799 7609 6.431198 TTGCGGATTCCACTATTAAGAAAC 57.569 37.500 3.09 0.00 0.00 2.78
4800 7610 5.588648 CCTTGCGGATTCCACTATTAAGAAA 59.411 40.000 3.09 0.00 0.00 2.52
4801 7611 5.123227 CCTTGCGGATTCCACTATTAAGAA 58.877 41.667 3.09 0.00 0.00 2.52
4802 7612 4.163458 ACCTTGCGGATTCCACTATTAAGA 59.837 41.667 3.09 0.00 0.00 2.10
4803 7613 4.273480 CACCTTGCGGATTCCACTATTAAG 59.727 45.833 3.09 0.00 0.00 1.85
4804 7614 4.196193 CACCTTGCGGATTCCACTATTAA 58.804 43.478 3.09 0.00 0.00 1.40
4805 7615 3.804036 CACCTTGCGGATTCCACTATTA 58.196 45.455 3.09 0.00 0.00 0.98
4806 7616 2.643551 CACCTTGCGGATTCCACTATT 58.356 47.619 3.09 0.00 0.00 1.73
4807 7617 1.747206 GCACCTTGCGGATTCCACTAT 60.747 52.381 3.09 0.00 31.71 2.12
4808 7618 0.392461 GCACCTTGCGGATTCCACTA 60.392 55.000 3.09 0.00 31.71 2.74
4809 7619 1.675641 GCACCTTGCGGATTCCACT 60.676 57.895 3.09 0.00 31.71 4.00
4810 7620 2.877691 GCACCTTGCGGATTCCAC 59.122 61.111 3.09 0.00 31.71 4.02
4819 7629 3.052745 GCTCTTTAAACTTGCACCTTGC 58.947 45.455 0.00 0.00 45.29 4.01
4820 7630 4.305989 TGCTCTTTAAACTTGCACCTTG 57.694 40.909 0.00 0.00 0.00 3.61
4821 7631 5.068987 TGATTGCTCTTTAAACTTGCACCTT 59.931 36.000 0.00 0.00 33.13 3.50
4822 7632 4.584325 TGATTGCTCTTTAAACTTGCACCT 59.416 37.500 0.00 0.00 33.13 4.00
4823 7633 4.870363 TGATTGCTCTTTAAACTTGCACC 58.130 39.130 0.00 2.67 33.13 5.01
4824 7634 6.151691 TGATGATTGCTCTTTAAACTTGCAC 58.848 36.000 0.00 0.00 33.13 4.57
4825 7635 6.330004 TGATGATTGCTCTTTAAACTTGCA 57.670 33.333 0.00 0.00 0.00 4.08
4826 7636 7.642071 TTTGATGATTGCTCTTTAAACTTGC 57.358 32.000 0.00 0.00 0.00 4.01
4828 7638 9.985730 TGATTTTGATGATTGCTCTTTAAACTT 57.014 25.926 0.00 0.00 0.00 2.66
4829 7639 9.415544 GTGATTTTGATGATTGCTCTTTAAACT 57.584 29.630 0.00 0.00 0.00 2.66
4830 7640 8.368126 CGTGATTTTGATGATTGCTCTTTAAAC 58.632 33.333 0.00 0.00 0.00 2.01
4831 7641 7.541783 CCGTGATTTTGATGATTGCTCTTTAAA 59.458 33.333 0.00 0.00 0.00 1.52
4832 7642 7.028962 CCGTGATTTTGATGATTGCTCTTTAA 58.971 34.615 0.00 0.00 0.00 1.52
4833 7643 6.374053 TCCGTGATTTTGATGATTGCTCTTTA 59.626 34.615 0.00 0.00 0.00 1.85
4834 7644 5.183713 TCCGTGATTTTGATGATTGCTCTTT 59.816 36.000 0.00 0.00 0.00 2.52
4835 7645 4.701651 TCCGTGATTTTGATGATTGCTCTT 59.298 37.500 0.00 0.00 0.00 2.85
4836 7646 4.264253 TCCGTGATTTTGATGATTGCTCT 58.736 39.130 0.00 0.00 0.00 4.09
4837 7647 4.621068 TCCGTGATTTTGATGATTGCTC 57.379 40.909 0.00 0.00 0.00 4.26
4838 7648 5.163513 GTTTCCGTGATTTTGATGATTGCT 58.836 37.500 0.00 0.00 0.00 3.91
4839 7649 4.327087 GGTTTCCGTGATTTTGATGATTGC 59.673 41.667 0.00 0.00 0.00 3.56
4840 7650 5.713025 AGGTTTCCGTGATTTTGATGATTG 58.287 37.500 0.00 0.00 0.00 2.67
4841 7651 5.982890 AGGTTTCCGTGATTTTGATGATT 57.017 34.783 0.00 0.00 0.00 2.57
4842 7652 5.066505 GCTAGGTTTCCGTGATTTTGATGAT 59.933 40.000 0.00 0.00 0.00 2.45
4843 7653 4.394920 GCTAGGTTTCCGTGATTTTGATGA 59.605 41.667 0.00 0.00 0.00 2.92
4844 7654 4.155826 TGCTAGGTTTCCGTGATTTTGATG 59.844 41.667 0.00 0.00 0.00 3.07
4845 7655 4.331968 TGCTAGGTTTCCGTGATTTTGAT 58.668 39.130 0.00 0.00 0.00 2.57
4846 7656 3.745799 TGCTAGGTTTCCGTGATTTTGA 58.254 40.909 0.00 0.00 0.00 2.69
4847 7657 4.497473 TTGCTAGGTTTCCGTGATTTTG 57.503 40.909 0.00 0.00 0.00 2.44
4848 7658 5.242838 TGATTTGCTAGGTTTCCGTGATTTT 59.757 36.000 0.00 0.00 0.00 1.82
4849 7659 4.764823 TGATTTGCTAGGTTTCCGTGATTT 59.235 37.500 0.00 0.00 0.00 2.17
4850 7660 4.156008 GTGATTTGCTAGGTTTCCGTGATT 59.844 41.667 0.00 0.00 0.00 2.57
4851 7661 3.689649 GTGATTTGCTAGGTTTCCGTGAT 59.310 43.478 0.00 0.00 0.00 3.06
4852 7662 3.071479 GTGATTTGCTAGGTTTCCGTGA 58.929 45.455 0.00 0.00 0.00 4.35
4853 7663 2.811431 TGTGATTTGCTAGGTTTCCGTG 59.189 45.455 0.00 0.00 0.00 4.94
4854 7664 2.812011 GTGTGATTTGCTAGGTTTCCGT 59.188 45.455 0.00 0.00 0.00 4.69
4855 7665 2.811431 TGTGTGATTTGCTAGGTTTCCG 59.189 45.455 0.00 0.00 0.00 4.30
4856 7666 4.846779 TTGTGTGATTTGCTAGGTTTCC 57.153 40.909 0.00 0.00 0.00 3.13
4857 7667 5.831997 ACTTTGTGTGATTTGCTAGGTTTC 58.168 37.500 0.00 0.00 0.00 2.78
4858 7668 5.852282 ACTTTGTGTGATTTGCTAGGTTT 57.148 34.783 0.00 0.00 0.00 3.27
4859 7669 5.852282 AACTTTGTGTGATTTGCTAGGTT 57.148 34.783 0.00 0.00 0.00 3.50
4860 7670 5.852282 AAACTTTGTGTGATTTGCTAGGT 57.148 34.783 0.00 0.00 0.00 3.08
4861 7671 6.018832 CCAAAAACTTTGTGTGATTTGCTAGG 60.019 38.462 0.00 0.00 36.13 3.02
4862 7672 6.756074 TCCAAAAACTTTGTGTGATTTGCTAG 59.244 34.615 0.00 0.00 36.13 3.42
4863 7673 6.634805 TCCAAAAACTTTGTGTGATTTGCTA 58.365 32.000 0.00 0.00 36.13 3.49
4864 7674 5.486526 TCCAAAAACTTTGTGTGATTTGCT 58.513 33.333 0.00 0.00 36.13 3.91
4865 7675 5.793026 TCCAAAAACTTTGTGTGATTTGC 57.207 34.783 0.00 0.00 36.13 3.68
4866 7676 7.118724 CGATTCCAAAAACTTTGTGTGATTTG 58.881 34.615 0.00 0.00 36.69 2.32
4867 7677 6.816140 ACGATTCCAAAAACTTTGTGTGATTT 59.184 30.769 0.00 0.00 0.00 2.17
4868 7678 6.255453 CACGATTCCAAAAACTTTGTGTGATT 59.745 34.615 0.00 0.00 0.00 2.57
4869 7679 5.748152 CACGATTCCAAAAACTTTGTGTGAT 59.252 36.000 0.00 0.00 0.00 3.06
4870 7680 5.098893 CACGATTCCAAAAACTTTGTGTGA 58.901 37.500 0.00 0.00 0.00 3.58
4871 7681 4.267452 CCACGATTCCAAAAACTTTGTGTG 59.733 41.667 0.00 0.00 0.00 3.82
4872 7682 4.158764 TCCACGATTCCAAAAACTTTGTGT 59.841 37.500 0.00 0.00 0.00 3.72
4873 7683 4.677584 TCCACGATTCCAAAAACTTTGTG 58.322 39.130 0.00 0.00 0.00 3.33
4874 7684 4.993029 TCCACGATTCCAAAAACTTTGT 57.007 36.364 0.00 0.00 0.00 2.83
4875 7685 5.578727 TGTTTCCACGATTCCAAAAACTTTG 59.421 36.000 0.00 0.00 0.00 2.77
4876 7686 5.579119 GTGTTTCCACGATTCCAAAAACTTT 59.421 36.000 0.00 0.00 0.00 2.66
4877 7687 5.105513 AGTGTTTCCACGATTCCAAAAACTT 60.106 36.000 0.00 0.00 46.56 2.66
4878 7688 4.401202 AGTGTTTCCACGATTCCAAAAACT 59.599 37.500 0.00 0.00 46.56 2.66
4879 7689 4.678622 AGTGTTTCCACGATTCCAAAAAC 58.321 39.130 0.00 0.00 46.56 2.43
4880 7690 4.993029 AGTGTTTCCACGATTCCAAAAA 57.007 36.364 0.00 0.00 46.56 1.94
4881 7691 4.023536 GCTAGTGTTTCCACGATTCCAAAA 60.024 41.667 0.00 0.00 46.56 2.44
4882 7692 3.500680 GCTAGTGTTTCCACGATTCCAAA 59.499 43.478 0.00 0.00 46.56 3.28
4883 7693 3.071479 GCTAGTGTTTCCACGATTCCAA 58.929 45.455 0.00 0.00 46.56 3.53
4884 7694 2.037902 TGCTAGTGTTTCCACGATTCCA 59.962 45.455 0.00 0.00 46.56 3.53
4885 7695 2.415512 GTGCTAGTGTTTCCACGATTCC 59.584 50.000 0.00 0.00 46.56 3.01
4886 7696 2.415512 GGTGCTAGTGTTTCCACGATTC 59.584 50.000 0.00 0.00 46.56 2.52
4887 7697 2.423577 GGTGCTAGTGTTTCCACGATT 58.576 47.619 0.00 0.00 46.56 3.34
4888 7698 1.338769 GGGTGCTAGTGTTTCCACGAT 60.339 52.381 0.00 0.00 46.56 3.73
4889 7699 0.034337 GGGTGCTAGTGTTTCCACGA 59.966 55.000 0.00 0.00 46.56 4.35
4890 7700 0.250124 TGGGTGCTAGTGTTTCCACG 60.250 55.000 0.00 0.00 46.56 4.94
4891 7701 1.975660 TTGGGTGCTAGTGTTTCCAC 58.024 50.000 0.00 0.00 42.17 4.02
4892 7702 2.738587 TTTGGGTGCTAGTGTTTCCA 57.261 45.000 0.00 0.00 0.00 3.53
4893 7703 3.057526 GTGATTTGGGTGCTAGTGTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
4894 7704 3.568007 TGTGATTTGGGTGCTAGTGTTTC 59.432 43.478 0.00 0.00 0.00 2.78
4895 7705 3.317993 GTGTGATTTGGGTGCTAGTGTTT 59.682 43.478 0.00 0.00 0.00 2.83
4896 7706 2.884639 GTGTGATTTGGGTGCTAGTGTT 59.115 45.455 0.00 0.00 0.00 3.32
4897 7707 2.158682 TGTGTGATTTGGGTGCTAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
4898 7708 2.503331 TGTGTGATTTGGGTGCTAGTG 58.497 47.619 0.00 0.00 0.00 2.74
4899 7709 2.949177 TGTGTGATTTGGGTGCTAGT 57.051 45.000 0.00 0.00 0.00 2.57
4900 7710 3.612479 GCTTTGTGTGATTTGGGTGCTAG 60.612 47.826 0.00 0.00 0.00 3.42
4901 7711 2.295909 GCTTTGTGTGATTTGGGTGCTA 59.704 45.455 0.00 0.00 0.00 3.49
4902 7712 1.069049 GCTTTGTGTGATTTGGGTGCT 59.931 47.619 0.00 0.00 0.00 4.40
4903 7713 1.202510 TGCTTTGTGTGATTTGGGTGC 60.203 47.619 0.00 0.00 0.00 5.01
4904 7714 2.886862 TGCTTTGTGTGATTTGGGTG 57.113 45.000 0.00 0.00 0.00 4.61
4905 7715 3.056607 GCTATGCTTTGTGTGATTTGGGT 60.057 43.478 0.00 0.00 0.00 4.51
4906 7716 3.056678 TGCTATGCTTTGTGTGATTTGGG 60.057 43.478 0.00 0.00 0.00 4.12
4907 7717 4.177165 TGCTATGCTTTGTGTGATTTGG 57.823 40.909 0.00 0.00 0.00 3.28
4908 7718 5.865013 TGAATGCTATGCTTTGTGTGATTTG 59.135 36.000 0.00 0.00 0.00 2.32
4909 7719 6.028146 TGAATGCTATGCTTTGTGTGATTT 57.972 33.333 0.00 0.00 0.00 2.17
4910 7720 5.648178 TGAATGCTATGCTTTGTGTGATT 57.352 34.783 0.00 0.00 0.00 2.57
4911 7721 5.358725 TCATGAATGCTATGCTTTGTGTGAT 59.641 36.000 0.00 0.00 0.00 3.06
4912 7722 4.701171 TCATGAATGCTATGCTTTGTGTGA 59.299 37.500 0.00 0.00 0.00 3.58
4913 7723 4.989044 TCATGAATGCTATGCTTTGTGTG 58.011 39.130 0.00 0.00 0.00 3.82
4914 7724 5.593095 AGATCATGAATGCTATGCTTTGTGT 59.407 36.000 0.00 0.00 0.00 3.72
4915 7725 6.073327 AGATCATGAATGCTATGCTTTGTG 57.927 37.500 0.00 0.00 0.00 3.33
4916 7726 6.710597 AAGATCATGAATGCTATGCTTTGT 57.289 33.333 0.00 0.00 0.00 2.83
4917 7727 9.692749 ATTAAAGATCATGAATGCTATGCTTTG 57.307 29.630 0.00 0.00 0.00 2.77
4961 7771 7.454260 AGAAAACTTTATGATGAGTGGGAAC 57.546 36.000 0.00 0.00 0.00 3.62
4962 7772 7.829211 CCTAGAAAACTTTATGATGAGTGGGAA 59.171 37.037 0.00 0.00 0.00 3.97
4963 7773 7.338710 CCTAGAAAACTTTATGATGAGTGGGA 58.661 38.462 0.00 0.00 0.00 4.37
4964 7774 6.543831 CCCTAGAAAACTTTATGATGAGTGGG 59.456 42.308 0.00 0.00 0.00 4.61
4965 7775 7.338710 TCCCTAGAAAACTTTATGATGAGTGG 58.661 38.462 0.00 0.00 0.00 4.00
4966 7776 8.970859 ATCCCTAGAAAACTTTATGATGAGTG 57.029 34.615 0.00 0.00 0.00 3.51
4972 7782 8.643324 GCTCTCTATCCCTAGAAAACTTTATGA 58.357 37.037 0.00 0.00 33.59 2.15
4973 7783 8.424918 TGCTCTCTATCCCTAGAAAACTTTATG 58.575 37.037 0.00 0.00 33.59 1.90
4974 7784 8.425703 GTGCTCTCTATCCCTAGAAAACTTTAT 58.574 37.037 0.00 0.00 33.59 1.40
4975 7785 7.147707 GGTGCTCTCTATCCCTAGAAAACTTTA 60.148 40.741 0.00 0.00 33.59 1.85
4976 7786 6.352308 GGTGCTCTCTATCCCTAGAAAACTTT 60.352 42.308 0.00 0.00 33.59 2.66
4977 7787 5.129650 GGTGCTCTCTATCCCTAGAAAACTT 59.870 44.000 0.00 0.00 33.59 2.66
4978 7788 4.651962 GGTGCTCTCTATCCCTAGAAAACT 59.348 45.833 0.00 0.00 33.59 2.66
4979 7789 4.202274 GGGTGCTCTCTATCCCTAGAAAAC 60.202 50.000 0.00 0.00 37.18 2.43
4980 7790 3.967987 GGGTGCTCTCTATCCCTAGAAAA 59.032 47.826 0.00 0.00 37.18 2.29
4981 7791 3.052109 TGGGTGCTCTCTATCCCTAGAAA 60.052 47.826 0.00 0.00 40.48 2.52
4982 7792 2.518407 TGGGTGCTCTCTATCCCTAGAA 59.482 50.000 0.00 0.00 40.48 2.10
4983 7793 2.144450 TGGGTGCTCTCTATCCCTAGA 58.856 52.381 0.00 0.00 40.48 2.43
4984 7794 2.685106 TGGGTGCTCTCTATCCCTAG 57.315 55.000 0.00 0.00 40.48 3.02
4985 7795 3.414759 TTTGGGTGCTCTCTATCCCTA 57.585 47.619 0.00 0.00 40.48 3.53
4986 7796 2.270434 TTTGGGTGCTCTCTATCCCT 57.730 50.000 0.00 0.00 40.48 4.20
4987 7797 2.439507 TGATTTGGGTGCTCTCTATCCC 59.560 50.000 0.00 0.00 40.26 3.85
4988 7798 3.118261 TGTGATTTGGGTGCTCTCTATCC 60.118 47.826 0.00 0.00 0.00 2.59
4989 7799 3.873952 GTGTGATTTGGGTGCTCTCTATC 59.126 47.826 0.00 0.00 0.00 2.08
4990 7800 3.264193 TGTGTGATTTGGGTGCTCTCTAT 59.736 43.478 0.00 0.00 0.00 1.98
4991 7801 2.637382 TGTGTGATTTGGGTGCTCTCTA 59.363 45.455 0.00 0.00 0.00 2.43
4992 7802 1.421268 TGTGTGATTTGGGTGCTCTCT 59.579 47.619 0.00 0.00 0.00 3.10
4993 7803 1.896220 TGTGTGATTTGGGTGCTCTC 58.104 50.000 0.00 0.00 0.00 3.20
4994 7804 2.363306 TTGTGTGATTTGGGTGCTCT 57.637 45.000 0.00 0.00 0.00 4.09
4995 7805 2.863704 GCTTTGTGTGATTTGGGTGCTC 60.864 50.000 0.00 0.00 0.00 4.26
4996 7806 1.069049 GCTTTGTGTGATTTGGGTGCT 59.931 47.619 0.00 0.00 0.00 4.40
4997 7807 1.202510 TGCTTTGTGTGATTTGGGTGC 60.203 47.619 0.00 0.00 0.00 5.01
4998 7808 2.886862 TGCTTTGTGTGATTTGGGTG 57.113 45.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.