Multiple sequence alignment - TraesCS6D01G199600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G199600 chr6D 100.000 8978 0 0 1 8978 277640949 277649926 0.000000e+00 16580.0
1 TraesCS6D01G199600 chr6D 93.917 1233 67 3 6478 7710 77705535 77706759 0.000000e+00 1855.0
2 TraesCS6D01G199600 chr6D 100.000 37 0 0 1816 1852 139369339 139369303 1.620000e-07 69.4
3 TraesCS6D01G199600 chr6A 96.295 4103 89 29 2144 6221 397533783 397529719 0.000000e+00 6676.0
4 TraesCS6D01G199600 chr6A 91.601 1643 87 28 514 2130 397535780 397534163 0.000000e+00 2222.0
5 TraesCS6D01G199600 chr6A 87.829 912 70 16 8100 8978 397529073 397528170 0.000000e+00 1031.0
6 TraesCS6D01G199600 chr6A 90.887 417 18 9 7711 8114 397529528 397529119 7.930000e-150 542.0
7 TraesCS6D01G199600 chr6A 92.746 193 13 1 6264 6456 397529720 397529529 2.470000e-70 278.0
8 TraesCS6D01G199600 chr6A 84.444 90 12 2 8891 8978 6337217 6337306 4.470000e-13 87.9
9 TraesCS6D01G199600 chr6A 89.041 73 3 4 6205 6276 104051296 104051364 1.610000e-12 86.1
10 TraesCS6D01G199600 chr6B 94.428 3823 128 28 2176 5949 439350236 439354022 0.000000e+00 5801.0
11 TraesCS6D01G199600 chr6B 92.079 1414 66 19 790 2179 439348646 439350037 0.000000e+00 1949.0
12 TraesCS6D01G199600 chr6B 91.402 535 26 6 5945 6477 439356288 439356804 0.000000e+00 715.0
13 TraesCS6D01G199600 chr6B 93.478 460 22 4 7710 8169 439356789 439357240 0.000000e+00 676.0
14 TraesCS6D01G199600 chr6B 92.487 386 28 1 1 385 37034691 37035076 1.320000e-152 551.0
15 TraesCS6D01G199600 chr6B 79.778 450 61 19 8166 8612 439378308 439378730 5.270000e-77 300.0
16 TraesCS6D01G199600 chr6B 89.785 186 19 0 514 699 439348456 439348641 1.160000e-58 239.0
17 TraesCS6D01G199600 chr1D 94.562 1232 58 4 6479 7710 17123039 17121817 0.000000e+00 1895.0
18 TraesCS6D01G199600 chr1D 87.523 537 34 10 1 504 453225953 453226489 2.790000e-164 590.0
19 TraesCS6D01G199600 chr1D 89.474 76 6 2 8904 8978 310877930 310878004 2.670000e-15 95.3
20 TraesCS6D01G199600 chr1D 92.982 57 3 1 542 597 321925973 321925917 2.080000e-11 82.4
21 TraesCS6D01G199600 chr7D 94.426 1238 57 6 6477 7710 73132254 73131025 0.000000e+00 1893.0
22 TraesCS6D01G199600 chr7D 87.405 524 42 8 1 505 9174014 9174532 1.680000e-161 580.0
23 TraesCS6D01G199600 chr7D 86.667 90 10 2 8889 8976 71056633 71056722 2.060000e-16 99.0
24 TraesCS6D01G199600 chr7D 90.667 75 5 2 6201 6273 197883763 197883689 2.060000e-16 99.0
25 TraesCS6D01G199600 chr7D 92.537 67 3 2 8889 8953 112118902 112118968 2.670000e-15 95.3
26 TraesCS6D01G199600 chr7D 92.537 67 3 2 8889 8953 372853418 372853352 2.670000e-15 95.3
27 TraesCS6D01G199600 chr7D 89.333 75 3 2 6200 6273 459786401 459786331 1.240000e-13 89.8
28 TraesCS6D01G199600 chr7D 100.000 37 0 0 1816 1852 131103039 131103003 1.620000e-07 69.4
29 TraesCS6D01G199600 chr5D 94.242 1233 64 2 6478 7710 30613914 30615139 0.000000e+00 1877.0
30 TraesCS6D01G199600 chr5D 94.185 1221 62 5 6482 7702 432457579 432456368 0.000000e+00 1853.0
31 TraesCS6D01G199600 chr5D 76.712 219 29 16 6460 6676 446076722 446076920 1.590000e-17 102.0
32 TraesCS6D01G199600 chr2D 94.127 1226 65 2 6477 7702 647736316 647737534 0.000000e+00 1858.0
33 TraesCS6D01G199600 chr2D 86.076 553 43 11 1 520 485850363 485850914 1.690000e-156 564.0
34 TraesCS6D01G199600 chr3D 94.055 1228 65 3 6476 7702 389263764 389264984 0.000000e+00 1857.0
35 TraesCS6D01G199600 chr3D 94.036 1224 66 2 6479 7702 602107467 602106251 0.000000e+00 1849.0
36 TraesCS6D01G199600 chr3D 93.506 1232 72 3 6480 7711 529493692 529494915 0.000000e+00 1825.0
37 TraesCS6D01G199600 chr3D 87.805 615 65 8 3429 4037 403700743 403701353 0.000000e+00 712.0
38 TraesCS6D01G199600 chr3D 89.735 302 22 5 4092 4392 403701542 403701835 2.370000e-100 377.0
39 TraesCS6D01G199600 chr3D 87.845 181 21 1 3109 3288 403700373 403700553 2.540000e-50 211.0
40 TraesCS6D01G199600 chr3D 94.118 119 7 0 2950 3068 403699261 403699379 1.990000e-41 182.0
41 TraesCS6D01G199600 chr3A 85.421 974 91 21 3429 4395 525637942 525638871 0.000000e+00 965.0
42 TraesCS6D01G199600 chr3A 88.023 526 40 7 1 504 492748744 492748220 1.290000e-167 601.0
43 TraesCS6D01G199600 chr3A 85.531 546 46 8 1 513 696150635 696151180 2.850000e-149 540.0
44 TraesCS6D01G199600 chr3A 88.571 175 19 1 3109 3282 525637571 525637745 2.540000e-50 211.0
45 TraesCS6D01G199600 chr4A 87.429 525 45 5 1 504 8606673 8606149 1.300000e-162 584.0
46 TraesCS6D01G199600 chr4A 86.220 537 41 10 1 504 698741070 698741606 1.320000e-152 551.0
47 TraesCS6D01G199600 chr4A 84.585 506 54 13 5 504 177786896 177787383 1.750000e-131 481.0
48 TraesCS6D01G199600 chr4A 93.023 43 3 0 1810 1852 686837578 686837536 7.530000e-06 63.9
49 TraesCS6D01G199600 chr5A 86.778 537 38 11 1 504 238649803 238650339 1.310000e-157 568.0
50 TraesCS6D01G199600 chr5A 77.695 269 45 13 8293 8556 90931091 90931349 5.620000e-32 150.0
51 TraesCS6D01G199600 chr5A 91.304 46 3 1 1817 1862 164153897 164153853 2.710000e-05 62.1
52 TraesCS6D01G199600 chr4B 86.778 537 38 9 1 504 124568959 124568423 1.310000e-157 568.0
53 TraesCS6D01G199600 chr4B 92.487 386 28 1 1 385 628978174 628977789 1.320000e-152 551.0
54 TraesCS6D01G199600 chr4B 92.487 386 27 2 1 385 629015714 629015330 1.320000e-152 551.0
55 TraesCS6D01G199600 chr4B 92.228 386 29 1 1 385 263403538 263403923 6.130000e-151 545.0
56 TraesCS6D01G199600 chr4B 87.912 91 9 2 8890 8978 637982676 637982586 1.230000e-18 106.0
57 TraesCS6D01G199600 chr4B 92.308 65 3 1 6201 6265 28165902 28165840 3.450000e-14 91.6
58 TraesCS6D01G199600 chr7A 85.714 546 44 7 1 513 657308690 657309234 6.130000e-151 545.0
59 TraesCS6D01G199600 chr7A 84.982 546 48 12 1 513 631649546 631650090 2.870000e-144 523.0
60 TraesCS6D01G199600 chr7A 88.043 92 10 1 8888 8978 6343180 6343089 3.430000e-19 108.0
61 TraesCS6D01G199600 chr7A 85.000 100 8 6 8884 8978 71329342 71329439 2.670000e-15 95.3
62 TraesCS6D01G199600 chr2A 85.714 546 42 12 1 513 417099667 417100209 2.200000e-150 544.0
63 TraesCS6D01G199600 chr2A 84.532 556 53 12 1 523 514882663 514883218 3.720000e-143 520.0
64 TraesCS6D01G199600 chr3B 88.693 398 24 10 4076 4471 529803740 529804118 4.910000e-127 466.0
65 TraesCS6D01G199600 chr3B 91.852 270 20 1 4549 4818 529804130 529804397 8.510000e-100 375.0
66 TraesCS6D01G199600 chr3B 81.846 325 36 17 8297 8614 487445668 487445360 1.500000e-62 252.0
67 TraesCS6D01G199600 chr3B 90.909 66 2 1 6203 6268 395706415 395706354 1.610000e-12 86.1
68 TraesCS6D01G199600 chr3B 94.545 55 3 0 6195 6249 450843908 450843962 1.610000e-12 86.1
69 TraesCS6D01G199600 chr3B 93.182 44 2 1 1817 1860 146948443 146948401 7.530000e-06 63.9
70 TraesCS6D01G199600 chr3B 91.304 46 2 2 1815 1860 816817210 816817167 2.710000e-05 62.1
71 TraesCS6D01G199600 chr1B 80.000 345 42 15 8287 8614 58329253 58328919 7.010000e-56 230.0
72 TraesCS6D01G199600 chr5B 86.408 103 11 3 8296 8397 617256987 617256887 9.530000e-20 110.0
73 TraesCS6D01G199600 chr5B 88.571 70 4 1 6200 6269 214942945 214942880 2.080000e-11 82.4
74 TraesCS6D01G199600 chrUn 92.537 67 3 2 8889 8953 111077128 111077062 2.670000e-15 95.3
75 TraesCS6D01G199600 chrUn 88.571 70 4 1 6200 6269 115400247 115400312 2.080000e-11 82.4
76 TraesCS6D01G199600 chr2B 95.238 42 1 1 1812 1852 456022212 456022171 2.090000e-06 65.8
77 TraesCS6D01G199600 chr2B 94.286 35 1 1 8350 8384 764148171 764148204 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G199600 chr6D 277640949 277649926 8977 False 16580.0 16580 100.00000 1 8978 1 chr6D.!!$F2 8977
1 TraesCS6D01G199600 chr6D 77705535 77706759 1224 False 1855.0 1855 93.91700 6478 7710 1 chr6D.!!$F1 1232
2 TraesCS6D01G199600 chr6A 397528170 397535780 7610 True 2149.8 6676 91.87160 514 8978 5 chr6A.!!$R1 8464
3 TraesCS6D01G199600 chr6B 439348456 439357240 8784 False 1876.0 5801 92.23440 514 8169 5 chr6B.!!$F3 7655
4 TraesCS6D01G199600 chr1D 17121817 17123039 1222 True 1895.0 1895 94.56200 6479 7710 1 chr1D.!!$R1 1231
5 TraesCS6D01G199600 chr1D 453225953 453226489 536 False 590.0 590 87.52300 1 504 1 chr1D.!!$F2 503
6 TraesCS6D01G199600 chr7D 73131025 73132254 1229 True 1893.0 1893 94.42600 6477 7710 1 chr7D.!!$R1 1233
7 TraesCS6D01G199600 chr7D 9174014 9174532 518 False 580.0 580 87.40500 1 505 1 chr7D.!!$F1 504
8 TraesCS6D01G199600 chr5D 30613914 30615139 1225 False 1877.0 1877 94.24200 6478 7710 1 chr5D.!!$F1 1232
9 TraesCS6D01G199600 chr5D 432456368 432457579 1211 True 1853.0 1853 94.18500 6482 7702 1 chr5D.!!$R1 1220
10 TraesCS6D01G199600 chr2D 647736316 647737534 1218 False 1858.0 1858 94.12700 6477 7702 1 chr2D.!!$F2 1225
11 TraesCS6D01G199600 chr2D 485850363 485850914 551 False 564.0 564 86.07600 1 520 1 chr2D.!!$F1 519
12 TraesCS6D01G199600 chr3D 389263764 389264984 1220 False 1857.0 1857 94.05500 6476 7702 1 chr3D.!!$F1 1226
13 TraesCS6D01G199600 chr3D 602106251 602107467 1216 True 1849.0 1849 94.03600 6479 7702 1 chr3D.!!$R1 1223
14 TraesCS6D01G199600 chr3D 529493692 529494915 1223 False 1825.0 1825 93.50600 6480 7711 1 chr3D.!!$F2 1231
15 TraesCS6D01G199600 chr3D 403699261 403701835 2574 False 370.5 712 89.87575 2950 4392 4 chr3D.!!$F3 1442
16 TraesCS6D01G199600 chr3A 492748220 492748744 524 True 601.0 601 88.02300 1 504 1 chr3A.!!$R1 503
17 TraesCS6D01G199600 chr3A 525637571 525638871 1300 False 588.0 965 86.99600 3109 4395 2 chr3A.!!$F2 1286
18 TraesCS6D01G199600 chr3A 696150635 696151180 545 False 540.0 540 85.53100 1 513 1 chr3A.!!$F1 512
19 TraesCS6D01G199600 chr4A 8606149 8606673 524 True 584.0 584 87.42900 1 504 1 chr4A.!!$R1 503
20 TraesCS6D01G199600 chr4A 698741070 698741606 536 False 551.0 551 86.22000 1 504 1 chr4A.!!$F2 503
21 TraesCS6D01G199600 chr5A 238649803 238650339 536 False 568.0 568 86.77800 1 504 1 chr5A.!!$F2 503
22 TraesCS6D01G199600 chr4B 124568423 124568959 536 True 568.0 568 86.77800 1 504 1 chr4B.!!$R2 503
23 TraesCS6D01G199600 chr7A 657308690 657309234 544 False 545.0 545 85.71400 1 513 1 chr7A.!!$F3 512
24 TraesCS6D01G199600 chr7A 631649546 631650090 544 False 523.0 523 84.98200 1 513 1 chr7A.!!$F2 512
25 TraesCS6D01G199600 chr2A 417099667 417100209 542 False 544.0 544 85.71400 1 513 1 chr2A.!!$F1 512
26 TraesCS6D01G199600 chr2A 514882663 514883218 555 False 520.0 520 84.53200 1 523 1 chr2A.!!$F2 522
27 TraesCS6D01G199600 chr3B 529803740 529804397 657 False 420.5 466 90.27250 4076 4818 2 chr3B.!!$F2 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.107214 ACATCCGCATCCGAACCAAT 60.107 50.000 0.00 0.00 36.29 3.16 F
867 933 0.526662 ACGACACGACATTCCCTCTC 59.473 55.000 0.00 0.00 0.00 3.20 F
1241 1313 0.735471 GGCGGAATGCTTTCTCTTCC 59.265 55.000 11.68 5.09 45.43 3.46 F
2654 3322 0.770499 TGACAATGGGAGCAGTGGAA 59.230 50.000 0.00 0.00 0.00 3.53 F
2655 3323 1.144708 TGACAATGGGAGCAGTGGAAA 59.855 47.619 0.00 0.00 0.00 3.13 F
3929 5661 4.082895 GCGTCTATTGGATCGGTACTGTAT 60.083 45.833 0.64 0.00 0.00 2.29 F
5116 7035 0.676184 GGATGCATCTGCTAGTCGGA 59.324 55.000 25.28 0.00 42.66 4.55 F
6422 10621 0.034896 GGCACTTCTGGTTTCTCCGA 59.965 55.000 0.00 0.00 39.52 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1257 2.049156 CGCGAGTGGCACTCAGAA 60.049 61.111 38.18 0.00 45.30 3.02 R
2642 3310 1.134068 GGAGGTATTTCCACTGCTCCC 60.134 57.143 0.00 0.00 39.02 4.30 R
2907 3593 0.632835 ATGGGTCAGGCCAATGTCAT 59.367 50.000 5.01 0.00 39.65 3.06 R
3957 5689 1.141657 CATCCTGGTCCCAATCGATGT 59.858 52.381 0.00 0.00 0.00 3.06 R
4171 6061 3.861131 GCCCTACATATAAGCCTCACACG 60.861 52.174 0.00 0.00 0.00 4.49 R
5516 7441 2.770802 AGACATGATGAGCTAGTTGCCT 59.229 45.455 0.00 0.00 44.23 4.75 R
6521 10720 0.108615 GCCGTATGCATCGCCTAGAT 60.109 55.000 0.19 0.00 41.01 1.98 R
8052 12269 0.034337 GGTTCACGCTGTTCAGGGTA 59.966 55.000 19.12 5.52 33.53 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.107214 ACATCCGCATCCGAACCAAT 60.107 50.000 0.00 0.00 36.29 3.16
60 67 6.813152 CCAATATGGAAATGGAAATTATCCGC 59.187 38.462 0.00 0.00 46.05 5.54
82 89 7.433719 TCCGCATCCGAATTTATTTAACAAATG 59.566 33.333 0.00 0.00 36.29 2.32
185 194 6.972901 GGAGGTAATTTTCAAAAATCTAGCCG 59.027 38.462 1.43 0.00 37.62 5.52
246 255 9.131791 AGTGGTCAAAATTTACTCTTTGTATGT 57.868 29.630 0.00 0.00 34.74 2.29
401 430 6.643770 TCGCTATTAAGAAAACATCCGATACC 59.356 38.462 0.00 0.00 0.00 2.73
425 454 6.752351 CCTATCTGTATTCGAATAACATCCGG 59.248 42.308 19.11 11.42 0.00 5.14
496 561 7.902920 AAATGGAAATGGTATGAGCACTATT 57.097 32.000 0.00 0.00 31.65 1.73
507 572 6.038271 GGTATGAGCACTATTTGATCCGTTTT 59.962 38.462 0.00 0.00 40.16 2.43
528 593 6.395780 TTTCACCCTTAAATAGGATGACCA 57.604 37.500 0.00 0.00 46.93 4.02
532 597 7.418378 TCACCCTTAAATAGGATGACCAATTT 58.582 34.615 0.00 0.00 42.06 1.82
637 702 1.148498 CGCATTTCCCTCCCCTACC 59.852 63.158 0.00 0.00 0.00 3.18
674 739 0.741221 AGAGGAAACGGCTGATTCGC 60.741 55.000 9.20 4.57 0.00 4.70
675 740 2.025359 GAGGAAACGGCTGATTCGCG 62.025 60.000 9.20 0.00 0.00 5.87
699 765 1.757118 CCTCCTAACGAGCCTGATTGA 59.243 52.381 0.00 0.00 37.27 2.57
749 815 8.184192 AGCCTAAATTTCAATACAATTCAGACG 58.816 33.333 0.00 0.00 0.00 4.18
757 823 4.921470 ATACAATTCAGACGACCAAACG 57.079 40.909 0.00 0.00 39.31 3.60
780 846 4.423732 GACCCAAATTACATCACATGCAC 58.576 43.478 0.00 0.00 0.00 4.57
781 847 3.119531 ACCCAAATTACATCACATGCACG 60.120 43.478 0.00 0.00 0.00 5.34
782 848 3.437428 CCAAATTACATCACATGCACGG 58.563 45.455 0.00 0.00 0.00 4.94
783 849 3.128415 CCAAATTACATCACATGCACGGA 59.872 43.478 0.00 0.00 0.00 4.69
784 850 4.202040 CCAAATTACATCACATGCACGGAT 60.202 41.667 0.00 0.00 0.00 4.18
785 851 4.556942 AATTACATCACATGCACGGATG 57.443 40.909 17.72 17.72 43.08 3.51
867 933 0.526662 ACGACACGACATTCCCTCTC 59.473 55.000 0.00 0.00 0.00 3.20
934 1000 0.873312 CATCGCTCGTCCATCACCAG 60.873 60.000 0.00 0.00 0.00 4.00
935 1001 1.323271 ATCGCTCGTCCATCACCAGT 61.323 55.000 0.00 0.00 0.00 4.00
1008 1079 4.791334 TCCATAAGGTTTGGGATGGAACTA 59.209 41.667 0.00 0.00 43.80 2.24
1185 1257 4.393680 TGTTTTACTGATTATTTCGCCGCT 59.606 37.500 0.00 0.00 0.00 5.52
1194 1266 1.639298 ATTTCGCCGCTTCTGAGTGC 61.639 55.000 0.00 0.00 31.93 4.40
1241 1313 0.735471 GGCGGAATGCTTTCTCTTCC 59.265 55.000 11.68 5.09 45.43 3.46
1279 1351 7.847711 ATATTTCCAGAGCTCTGTAGTGTAT 57.152 36.000 35.47 23.78 42.27 2.29
1280 1352 6.552445 ATTTCCAGAGCTCTGTAGTGTATT 57.448 37.500 35.47 13.76 42.27 1.89
1281 1353 7.661536 ATTTCCAGAGCTCTGTAGTGTATTA 57.338 36.000 35.47 14.64 42.27 0.98
1316 1392 6.049955 ACTGGTTGATTCGAGATTTCCTAA 57.950 37.500 0.00 0.00 0.00 2.69
1320 1396 5.296780 GGTTGATTCGAGATTTCCTAATGCA 59.703 40.000 0.00 0.00 0.00 3.96
1321 1397 6.016777 GGTTGATTCGAGATTTCCTAATGCAT 60.017 38.462 0.00 0.00 0.00 3.96
1350 1426 6.258947 TGATTGTCGACAAGATTGTGTTGTTA 59.741 34.615 32.19 9.02 42.43 2.41
1435 1513 3.077229 TCTCAATTTTGTGTTGTGCCG 57.923 42.857 0.00 0.00 0.00 5.69
1490 1568 2.035832 ACCAATTCCGGCTCAAAAACAG 59.964 45.455 0.00 0.00 0.00 3.16
1495 1573 1.142060 TCCGGCTCAAAAACAGAAGGA 59.858 47.619 0.00 0.00 0.00 3.36
1496 1574 1.953686 CCGGCTCAAAAACAGAAGGAA 59.046 47.619 0.00 0.00 0.00 3.36
1500 1578 4.504097 CGGCTCAAAAACAGAAGGAAAAAG 59.496 41.667 0.00 0.00 0.00 2.27
1504 1582 6.256539 GCTCAAAAACAGAAGGAAAAAGAAGG 59.743 38.462 0.00 0.00 0.00 3.46
1511 1589 4.946772 CAGAAGGAAAAAGAAGGAGATCCC 59.053 45.833 0.00 0.00 36.42 3.85
1524 1602 5.574970 AGGAGATCCCAAATGATCCTAAC 57.425 43.478 0.00 0.00 41.73 2.34
1528 1606 7.463618 AGGAGATCCCAAATGATCCTAACATAT 59.536 37.037 0.00 0.00 41.73 1.78
1644 1722 4.402474 TCTTCTCTGACACAGTCTGTTTGA 59.598 41.667 1.67 0.00 34.05 2.69
1790 1868 7.099764 TCTCCATTGTTGTCTACTCATTTCTC 58.900 38.462 0.00 0.00 0.00 2.87
1791 1869 6.173339 TCCATTGTTGTCTACTCATTTCTCC 58.827 40.000 0.00 0.00 0.00 3.71
1792 1870 5.063944 CCATTGTTGTCTACTCATTTCTCCG 59.936 44.000 0.00 0.00 0.00 4.63
1793 1871 4.866508 TGTTGTCTACTCATTTCTCCGT 57.133 40.909 0.00 0.00 0.00 4.69
1794 1872 5.209818 TGTTGTCTACTCATTTCTCCGTT 57.790 39.130 0.00 0.00 0.00 4.44
1795 1873 4.988540 TGTTGTCTACTCATTTCTCCGTTG 59.011 41.667 0.00 0.00 0.00 4.10
1796 1874 4.866508 TGTCTACTCATTTCTCCGTTGT 57.133 40.909 0.00 0.00 0.00 3.32
1798 1876 4.988540 TGTCTACTCATTTCTCCGTTGTTG 59.011 41.667 0.00 0.00 0.00 3.33
1801 1879 6.089150 GTCTACTCATTTCTCCGTTGTTGTAC 59.911 42.308 0.00 0.00 0.00 2.90
1802 1880 4.957296 ACTCATTTCTCCGTTGTTGTACT 58.043 39.130 0.00 0.00 0.00 2.73
1803 1881 5.365619 ACTCATTTCTCCGTTGTTGTACTT 58.634 37.500 0.00 0.00 0.00 2.24
1850 1939 7.781693 TCCCTCTGTAAACTAATATAAGACCGT 59.218 37.037 0.00 0.00 0.00 4.83
1851 1940 8.419442 CCCTCTGTAAACTAATATAAGACCGTT 58.581 37.037 0.00 0.00 0.00 4.44
1870 1964 5.465724 ACCGTTCAAGATAAGTGTTGAGAAC 59.534 40.000 0.00 0.00 38.64 3.01
2029 2126 2.292267 CCACCAAGAGGATGGAATTCG 58.708 52.381 0.00 0.00 43.54 3.34
2164 2627 6.038825 TGCGAAACCAGAATTCTTTTACTTGA 59.961 34.615 4.86 0.00 0.00 3.02
2168 2631 9.841880 GAAACCAGAATTCTTTTACTTGATACC 57.158 33.333 4.86 0.00 0.00 2.73
2294 2959 5.073554 TGTTGATGGGGCATATACAGATTCT 59.926 40.000 0.00 0.00 0.00 2.40
2498 3163 4.883083 TCTTGGATATTGAGACGGTATGC 58.117 43.478 0.00 0.00 0.00 3.14
2499 3164 3.678056 TGGATATTGAGACGGTATGCC 57.322 47.619 0.00 0.00 0.00 4.40
2500 3165 3.239449 TGGATATTGAGACGGTATGCCT 58.761 45.455 0.00 0.00 0.00 4.75
2638 3306 7.188834 TGTGAAATGAAATGAAGCGATATGAC 58.811 34.615 0.00 0.00 0.00 3.06
2639 3307 7.148272 TGTGAAATGAAATGAAGCGATATGACA 60.148 33.333 0.00 0.00 0.00 3.58
2640 3308 7.697710 GTGAAATGAAATGAAGCGATATGACAA 59.302 33.333 0.00 0.00 0.00 3.18
2641 3309 8.407832 TGAAATGAAATGAAGCGATATGACAAT 58.592 29.630 0.00 0.00 0.00 2.71
2642 3310 8.570096 AAATGAAATGAAGCGATATGACAATG 57.430 30.769 0.00 0.00 0.00 2.82
2643 3311 6.063640 TGAAATGAAGCGATATGACAATGG 57.936 37.500 0.00 0.00 0.00 3.16
2644 3312 5.008911 TGAAATGAAGCGATATGACAATGGG 59.991 40.000 0.00 0.00 0.00 4.00
2645 3313 3.836365 TGAAGCGATATGACAATGGGA 57.164 42.857 0.00 0.00 0.00 4.37
2646 3314 3.732212 TGAAGCGATATGACAATGGGAG 58.268 45.455 0.00 0.00 0.00 4.30
2647 3315 2.175878 AGCGATATGACAATGGGAGC 57.824 50.000 0.00 0.00 0.00 4.70
2648 3316 1.417517 AGCGATATGACAATGGGAGCA 59.582 47.619 0.00 0.00 0.00 4.26
2649 3317 1.802960 GCGATATGACAATGGGAGCAG 59.197 52.381 0.00 0.00 0.00 4.24
2650 3318 2.808202 GCGATATGACAATGGGAGCAGT 60.808 50.000 0.00 0.00 0.00 4.40
2651 3319 2.804527 CGATATGACAATGGGAGCAGTG 59.195 50.000 0.00 0.00 0.00 3.66
2652 3320 2.715749 TATGACAATGGGAGCAGTGG 57.284 50.000 0.00 0.00 0.00 4.00
2653 3321 0.994247 ATGACAATGGGAGCAGTGGA 59.006 50.000 0.00 0.00 0.00 4.02
2654 3322 0.770499 TGACAATGGGAGCAGTGGAA 59.230 50.000 0.00 0.00 0.00 3.53
2655 3323 1.144708 TGACAATGGGAGCAGTGGAAA 59.855 47.619 0.00 0.00 0.00 3.13
2777 3463 5.126067 TGTCCTTAGGAGAGCATTTATTGC 58.874 41.667 0.00 0.00 41.63 3.56
2822 3508 5.449588 CGCACTTCAAAGAATGCCATAGAAT 60.450 40.000 0.00 0.00 34.49 2.40
2854 3540 9.747898 TTTATTATTGTTAATGTGGTGTCTCCT 57.252 29.630 0.00 0.00 32.10 3.69
2987 3673 5.505181 AAATACGGATATTGGAGCTGGAT 57.495 39.130 0.00 0.00 31.07 3.41
3101 4725 4.753516 TGATCCTCGTGACAATATGGTT 57.246 40.909 0.00 0.00 0.00 3.67
3107 4731 5.104693 TCCTCGTGACAATATGGTTTGGTAT 60.105 40.000 0.00 0.00 0.00 2.73
3143 4782 7.519002 ACATTTCTTAAGCGTTGACATAACTC 58.481 34.615 0.00 0.00 0.00 3.01
3164 4803 4.348656 TCGAGTTTGACGAGATTATTCCG 58.651 43.478 0.00 0.00 34.85 4.30
3474 5196 5.308497 TGGGACAACTGGAAAGATGTTAGTA 59.692 40.000 0.00 0.00 31.92 1.82
3793 5523 5.582269 GTGCTAATCAAGATGCTAAGTCACA 59.418 40.000 0.00 0.00 0.00 3.58
3839 5569 8.056571 GCTGTAAATAATTGTCTTAGTACGCTG 58.943 37.037 0.00 0.00 0.00 5.18
3929 5661 4.082895 GCGTCTATTGGATCGGTACTGTAT 60.083 45.833 0.64 0.00 0.00 2.29
3957 5689 6.280855 TGTGTATCTCTGCTTGCTAGTTTA 57.719 37.500 0.00 0.00 0.00 2.01
4269 6159 6.878923 TGTTCTGATATTTTCTGTGGTACTGG 59.121 38.462 0.00 0.00 0.00 4.00
4317 6233 8.909923 GTGGTTTTATAACTATTAACATGCCCT 58.090 33.333 0.00 0.00 34.59 5.19
4829 6748 1.885887 TGCACCAATGACCAAGCTAAC 59.114 47.619 0.00 0.00 0.00 2.34
5116 7035 0.676184 GGATGCATCTGCTAGTCGGA 59.324 55.000 25.28 0.00 42.66 4.55
5291 7210 6.636705 ACAGTACTTGAACAAACTACTCACA 58.363 36.000 0.00 0.00 0.00 3.58
5454 7379 6.317789 TGAAACAAGTTCATGGAGATCAAC 57.682 37.500 0.00 0.00 41.47 3.18
5516 7441 7.386848 GTGCTCTGGTTACACTACTAAATGAAA 59.613 37.037 0.00 0.00 0.00 2.69
5656 7581 5.938279 AGCAGGTAATCATGACATCATTCT 58.062 37.500 0.00 0.00 33.61 2.40
5661 7586 9.297586 CAGGTAATCATGACATCATTCTTTTTG 57.702 33.333 0.00 0.00 33.61 2.44
5775 7701 8.773404 AAGTAAAGGTTAGTGATCATGTACAC 57.227 34.615 0.00 13.89 37.30 2.90
5887 7813 5.409520 GCTTCATTGATACACAGTGTCTTGA 59.590 40.000 10.23 4.83 37.47 3.02
5988 10185 8.785468 AAATGTTTGCAGAAATTTTATGTTGC 57.215 26.923 0.00 3.80 0.00 4.17
6084 10281 3.834489 AGTGGTAGCTCATTCTCATGG 57.166 47.619 0.00 0.00 0.00 3.66
6126 10323 6.729391 AAGAAAAAGAGTAGAGCGGAATTC 57.271 37.500 0.00 0.00 0.00 2.17
6178 10377 5.310409 ACATGGACATATTACCTTCCCTG 57.690 43.478 0.00 0.00 31.91 4.45
6249 10448 4.970003 CGCAGTTTTGAACTAAGGTTGAAG 59.030 41.667 0.00 0.00 40.46 3.02
6274 10473 5.070047 GGATCGGAGGGAGTACTATTTTTCA 59.930 44.000 0.00 0.00 0.00 2.69
6389 10588 3.548818 GCACATTTCTTTGCGTTGAGACT 60.549 43.478 0.00 0.00 0.00 3.24
6394 10593 7.059945 CACATTTCTTTGCGTTGAGACTTAATC 59.940 37.037 0.00 0.00 0.00 1.75
6398 10597 1.546923 TGCGTTGAGACTTAATCGGGA 59.453 47.619 4.88 0.00 0.00 5.14
6405 10604 1.202698 AGACTTAATCGGGATGCTGGC 60.203 52.381 0.00 0.00 0.00 4.85
6414 10613 1.001641 GGATGCTGGCACTTCTGGT 60.002 57.895 0.00 0.00 0.00 4.00
6419 10618 0.877743 GCTGGCACTTCTGGTTTCTC 59.122 55.000 0.00 0.00 0.00 2.87
6422 10621 0.034896 GGCACTTCTGGTTTCTCCGA 59.965 55.000 0.00 0.00 39.52 4.55
6458 10657 3.942829 TCAGAATGAACCTCCATGACAC 58.057 45.455 0.00 0.00 45.97 3.67
6459 10658 2.674852 CAGAATGAACCTCCATGACACG 59.325 50.000 0.00 0.00 39.69 4.49
6461 10660 2.680312 ATGAACCTCCATGACACGAG 57.320 50.000 0.00 0.00 0.00 4.18
6462 10661 1.338107 TGAACCTCCATGACACGAGT 58.662 50.000 0.00 0.00 0.00 4.18
6463 10662 2.521126 TGAACCTCCATGACACGAGTA 58.479 47.619 0.00 0.00 0.00 2.59
6464 10663 2.894765 TGAACCTCCATGACACGAGTAA 59.105 45.455 0.00 0.00 0.00 2.24
6465 10664 3.513912 TGAACCTCCATGACACGAGTAAT 59.486 43.478 0.00 0.00 0.00 1.89
6466 10665 4.707934 TGAACCTCCATGACACGAGTAATA 59.292 41.667 0.00 0.00 0.00 0.98
6467 10666 4.650754 ACCTCCATGACACGAGTAATAC 57.349 45.455 0.00 0.00 0.00 1.89
6468 10667 4.021229 ACCTCCATGACACGAGTAATACA 58.979 43.478 0.00 0.00 0.00 2.29
6469 10668 4.142227 ACCTCCATGACACGAGTAATACAC 60.142 45.833 0.00 0.00 0.00 2.90
6470 10669 4.142249 CCTCCATGACACGAGTAATACACA 60.142 45.833 0.00 0.00 0.00 3.72
6471 10670 5.394224 TCCATGACACGAGTAATACACAA 57.606 39.130 0.00 0.00 0.00 3.33
6472 10671 5.407502 TCCATGACACGAGTAATACACAAG 58.592 41.667 0.00 0.00 0.00 3.16
6473 10672 5.184287 TCCATGACACGAGTAATACACAAGA 59.816 40.000 0.00 0.00 0.00 3.02
6474 10673 5.867174 CCATGACACGAGTAATACACAAGAA 59.133 40.000 0.00 0.00 0.00 2.52
6519 10718 4.463879 CCCGGCCTCTGCACTCTG 62.464 72.222 0.00 0.00 40.13 3.35
6520 10719 3.699894 CCGGCCTCTGCACTCTGT 61.700 66.667 0.00 0.00 40.13 3.41
6521 10720 2.351244 CCGGCCTCTGCACTCTGTA 61.351 63.158 0.00 0.00 40.13 2.74
6525 10724 2.311463 GGCCTCTGCACTCTGTATCTA 58.689 52.381 0.00 0.00 40.13 1.98
6641 10840 2.426024 TCGCTACACCTATCCAGTTGAC 59.574 50.000 0.00 0.00 0.00 3.18
6688 10887 2.831685 TACCAAACAGACATCGCAGT 57.168 45.000 0.00 0.00 0.00 4.40
6708 10908 6.166982 GCAGTCAAACCTAACATCTAAGACT 58.833 40.000 0.00 0.00 34.45 3.24
6880 11080 1.913762 CCCAACGACACCTCCTCCT 60.914 63.158 0.00 0.00 0.00 3.69
6967 11167 0.390866 ATCAGCCGACACAGCTTGAG 60.391 55.000 3.37 0.00 38.95 3.02
6968 11168 1.005748 CAGCCGACACAGCTTGAGA 60.006 57.895 3.37 0.00 38.95 3.27
7018 11218 2.639970 CCGACCAGGCATGACAAAA 58.360 52.632 0.00 0.00 0.00 2.44
7055 11255 2.836372 TCAGGCATGACTTGACATCTCT 59.164 45.455 0.00 0.00 34.87 3.10
7057 11257 4.652881 TCAGGCATGACTTGACATCTCTAT 59.347 41.667 0.00 0.00 34.87 1.98
7134 11334 0.605319 TCCACAAACGATGCTCCCAC 60.605 55.000 0.00 0.00 0.00 4.61
7171 11371 1.518572 GTGTCGCCATCGTCCGATT 60.519 57.895 0.00 0.00 35.76 3.34
7234 11434 2.481568 TGAGTCGACAGTAGTTACACGG 59.518 50.000 19.50 0.00 0.00 4.94
7251 11451 1.146930 GGCGATGCCTCCATCAAGA 59.853 57.895 0.00 0.00 46.59 3.02
7265 11465 6.387041 TCCATCAAGATAACGACGTAGAAT 57.613 37.500 0.00 0.00 0.00 2.40
7299 11499 1.164041 CCAACGGCTCGGTTTTCACT 61.164 55.000 0.00 0.00 0.00 3.41
7323 11525 0.836400 ACCATGTCTCCCCAACTCGT 60.836 55.000 0.00 0.00 0.00 4.18
7436 11642 0.522180 AGACGACGCGAGATGAAGTT 59.478 50.000 15.93 0.00 0.00 2.66
7554 11760 4.070552 GACGCAGACCGGAAGCCT 62.071 66.667 9.46 0.00 42.52 4.58
7570 11776 2.445845 CTAGATCCGGCCCACCCA 60.446 66.667 0.00 0.00 0.00 4.51
7711 11917 1.352056 CGCGAGATCTGCACGAGTA 59.648 57.895 0.00 0.00 31.96 2.59
7712 11918 0.248094 CGCGAGATCTGCACGAGTAA 60.248 55.000 0.00 0.00 31.96 2.24
7713 11919 1.598183 CGCGAGATCTGCACGAGTAAT 60.598 52.381 0.00 0.00 31.96 1.89
7714 11920 2.349532 CGCGAGATCTGCACGAGTAATA 60.350 50.000 0.00 0.00 31.96 0.98
7715 11921 2.974536 GCGAGATCTGCACGAGTAATAC 59.025 50.000 0.00 0.00 31.96 1.89
7716 11922 3.548214 GCGAGATCTGCACGAGTAATACA 60.548 47.826 0.00 0.00 31.96 2.29
7717 11923 3.969352 CGAGATCTGCACGAGTAATACAC 59.031 47.826 0.00 0.00 31.96 2.90
7718 11924 4.495844 CGAGATCTGCACGAGTAATACACA 60.496 45.833 0.00 0.00 31.96 3.72
7719 11925 5.324784 AGATCTGCACGAGTAATACACAA 57.675 39.130 0.00 0.00 0.00 3.33
7720 11926 5.344066 AGATCTGCACGAGTAATACACAAG 58.656 41.667 0.00 0.00 0.00 3.16
7732 11941 9.355215 CGAGTAATACACAAGAAGTAGTTCATT 57.645 33.333 12.77 5.10 34.82 2.57
7849 12058 3.943777 CCTGGAAAAGGTTCTTGGGACAA 60.944 47.826 0.00 0.00 42.64 3.18
7902 12111 2.158667 TGAAGTTTGGAGTGGGAGGAAC 60.159 50.000 0.00 0.00 0.00 3.62
8015 12232 2.574369 TCACGGTGGGAATAATCTTGGT 59.426 45.455 8.50 0.00 0.00 3.67
8042 12259 5.589050 CCTACTGCAATCCCATGATATGATG 59.411 44.000 0.00 0.00 0.00 3.07
8044 12261 6.130692 ACTGCAATCCCATGATATGATGTA 57.869 37.500 1.35 0.00 0.00 2.29
8046 12263 6.657966 ACTGCAATCCCATGATATGATGTAAG 59.342 38.462 1.35 0.00 0.00 2.34
8047 12264 5.416639 TGCAATCCCATGATATGATGTAAGC 59.583 40.000 1.35 0.00 0.00 3.09
8048 12265 5.163581 GCAATCCCATGATATGATGTAAGCC 60.164 44.000 1.35 0.00 0.00 4.35
8049 12266 6.185511 CAATCCCATGATATGATGTAAGCCT 58.814 40.000 1.35 0.00 0.00 4.58
8051 12268 6.299805 TCCCATGATATGATGTAAGCCTAC 57.700 41.667 1.35 0.00 0.00 3.18
8052 12269 6.025539 TCCCATGATATGATGTAAGCCTACT 58.974 40.000 1.35 0.00 0.00 2.57
8053 12270 7.189087 TCCCATGATATGATGTAAGCCTACTA 58.811 38.462 1.35 0.00 0.00 1.82
8054 12271 7.124298 TCCCATGATATGATGTAAGCCTACTAC 59.876 40.741 1.35 0.00 0.00 2.73
8195 12474 6.630444 AATTATGCATCAACTCAGGATGAC 57.370 37.500 0.19 0.00 42.56 3.06
8284 12568 2.233186 CTGTCTCTTCTGGTGCATCTCA 59.767 50.000 0.00 0.00 0.00 3.27
8362 12646 3.655486 TGAGTGCCTGCAAATTTTCATG 58.345 40.909 0.00 0.00 0.00 3.07
8381 12666 4.336153 TCATGATGAAATGACATTCGTGGG 59.664 41.667 0.05 0.00 31.58 4.61
8385 12670 4.545208 TGAAATGACATTCGTGGGAGTA 57.455 40.909 0.05 0.00 31.80 2.59
8387 12672 4.693566 TGAAATGACATTCGTGGGAGTAAC 59.306 41.667 0.05 0.00 31.80 2.50
8416 12701 7.719778 AAAATCAGAACTCCAAAATGCTTTC 57.280 32.000 0.00 0.00 0.00 2.62
8439 12724 7.881643 TCGTAAATAGCATTTTTGCAACATT 57.118 28.000 0.00 0.00 37.25 2.71
8525 12810 5.936956 AGAAAACATTTGTCAAAGTTTGGCA 59.063 32.000 18.71 18.71 44.76 4.92
8601 12888 6.985117 TGTTTATCAAAGAGCATTTGAGCTT 58.015 32.000 18.32 8.13 46.75 3.74
8602 12889 6.864685 TGTTTATCAAAGAGCATTTGAGCTTG 59.135 34.615 18.32 0.00 46.75 4.01
8621 12908 6.963322 AGCTTGGGAGTAGATACAAATTCTT 58.037 36.000 0.00 0.00 0.00 2.52
8623 12910 7.337942 AGCTTGGGAGTAGATACAAATTCTTTG 59.662 37.037 0.00 0.00 45.95 2.77
8690 12977 3.466836 TCGGCATGCCATTTACTAGAAG 58.533 45.455 34.93 14.85 35.37 2.85
8691 12978 2.031682 CGGCATGCCATTTACTAGAAGC 60.032 50.000 34.93 4.14 35.37 3.86
8692 12979 2.294512 GGCATGCCATTTACTAGAAGCC 59.705 50.000 32.08 0.00 35.81 4.35
8710 12997 1.151172 CCTTGGGCGTGTTTTGTTGC 61.151 55.000 0.00 0.00 0.00 4.17
8751 13038 2.223340 GCATAAAATGGCTCACGTGAGG 60.223 50.000 38.72 24.14 42.29 3.86
8761 13066 2.002586 CTCACGTGAGGCCATTTACTG 58.997 52.381 33.36 8.07 38.48 2.74
8784 13089 1.880027 AGGATTGGACGTGTTTTGCTC 59.120 47.619 0.00 0.00 0.00 4.26
8785 13090 1.880027 GGATTGGACGTGTTTTGCTCT 59.120 47.619 0.00 0.00 0.00 4.09
8789 13094 0.040958 GGACGTGTTTTGCTCTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
8790 13095 0.040958 GACGTGTTTTGCTCTGCTGG 60.041 55.000 0.00 0.00 0.00 4.85
8792 13097 0.317269 CGTGTTTTGCTCTGCTGGTG 60.317 55.000 0.00 0.00 0.00 4.17
8798 13103 1.473258 TTGCTCTGCTGGTGTTGTTT 58.527 45.000 0.00 0.00 0.00 2.83
8799 13104 0.740149 TGCTCTGCTGGTGTTGTTTG 59.260 50.000 0.00 0.00 0.00 2.93
8800 13105 1.024271 GCTCTGCTGGTGTTGTTTGA 58.976 50.000 0.00 0.00 0.00 2.69
8801 13106 1.405105 GCTCTGCTGGTGTTGTTTGAA 59.595 47.619 0.00 0.00 0.00 2.69
8809 13121 5.700832 TGCTGGTGTTGTTTGAACTAGATAG 59.299 40.000 0.00 0.00 0.00 2.08
8810 13122 5.701290 GCTGGTGTTGTTTGAACTAGATAGT 59.299 40.000 0.00 0.00 38.39 2.12
8821 13133 9.372369 GTTTGAACTAGATAGTGCAGTAGATTT 57.628 33.333 7.45 0.00 42.55 2.17
8822 13134 9.944376 TTTGAACTAGATAGTGCAGTAGATTTT 57.056 29.630 7.45 0.00 42.55 1.82
8823 13135 9.944376 TTGAACTAGATAGTGCAGTAGATTTTT 57.056 29.630 7.45 0.00 42.55 1.94
8844 13156 3.695830 TTTAGAATGTCTTCGGCTGGT 57.304 42.857 0.00 0.00 36.45 4.00
8875 13187 3.181464 GGGTAAATCTCCAGCAGGTAGAC 60.181 52.174 0.00 0.00 35.89 2.59
8877 13189 4.101741 GGTAAATCTCCAGCAGGTAGACAT 59.898 45.833 0.00 0.00 35.89 3.06
8879 13191 5.543507 AAATCTCCAGCAGGTAGACATAG 57.456 43.478 0.00 0.00 35.89 2.23
8900 13212 8.999431 ACATAGAAGAAAAGCGAAATCACTAAA 58.001 29.630 0.00 0.00 0.00 1.85
8905 13217 9.278734 GAAGAAAAGCGAAATCACTAAATAAGG 57.721 33.333 0.00 0.00 0.00 2.69
8907 13219 8.669243 AGAAAAGCGAAATCACTAAATAAGGAG 58.331 33.333 0.00 0.00 0.00 3.69
8912 13224 7.921745 AGCGAAATCACTAAATAAGGAGTACTC 59.078 37.037 14.87 14.87 0.00 2.59
8929 13241 6.043854 AGTACTCCTTTCAAAGATCACTCC 57.956 41.667 0.00 0.00 0.00 3.85
8932 13244 2.308866 TCCTTTCAAAGATCACTCCCCC 59.691 50.000 0.00 0.00 0.00 5.40
8934 13246 3.615155 CTTTCAAAGATCACTCCCCCTC 58.385 50.000 0.00 0.00 0.00 4.30
8935 13247 1.584724 TCAAAGATCACTCCCCCTCC 58.415 55.000 0.00 0.00 0.00 4.30
8944 13256 2.531685 TCCCCCTCCCAGGTTGTG 60.532 66.667 0.00 0.00 31.93 3.33
8949 13261 0.250901 CCCTCCCAGGTTGTGACAAG 60.251 60.000 0.00 0.00 31.93 3.16
8953 13265 0.182537 CCCAGGTTGTGACAAGTGGA 59.817 55.000 22.20 0.00 0.00 4.02
8957 13269 1.559682 AGGTTGTGACAAGTGGAGTGT 59.440 47.619 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.152661 GGATGCGGATAATTTCCATTTCCATA 59.847 38.462 0.00 0.00 45.78 2.74
177 186 6.543831 GGATAATTGGAATATTGCGGCTAGAT 59.456 38.462 0.00 0.00 0.00 1.98
375 384 7.170320 GGTATCGGATGTTTTCTTAATAGCGAA 59.830 37.037 0.00 0.00 0.00 4.70
401 430 6.752351 CCCGGATGTTATTCGAATACAGATAG 59.248 42.308 17.33 8.24 0.00 2.08
425 454 0.530744 TATCGGATACAGATGCGGCC 59.469 55.000 0.00 0.00 46.03 6.13
480 545 5.221722 ACGGATCAAATAGTGCTCATACCAT 60.222 40.000 0.00 0.00 0.00 3.55
486 551 5.000591 TGAAAACGGATCAAATAGTGCTCA 58.999 37.500 0.00 0.00 0.00 4.26
496 561 6.376018 CCTATTTAAGGGTGAAAACGGATCAA 59.624 38.462 0.00 0.00 42.32 2.57
528 593 2.676748 TGGGTCACTTCTTGCCAAATT 58.323 42.857 0.00 0.00 0.00 1.82
532 597 2.238521 GAATTGGGTCACTTCTTGCCA 58.761 47.619 0.00 0.00 0.00 4.92
622 687 2.076803 GCGGGTAGGGGAGGGAAAT 61.077 63.158 0.00 0.00 0.00 2.17
637 702 2.579787 CAGTTAGGCTCGTCGCGG 60.580 66.667 6.13 0.00 40.44 6.46
674 739 1.141234 GGCTCGTTAGGAGGAACCG 59.859 63.158 4.06 0.00 43.36 4.44
675 740 0.175989 CAGGCTCGTTAGGAGGAACC 59.824 60.000 4.06 0.00 43.36 3.62
699 765 8.818057 GCTGATATAAACGTTTACAACATCTCT 58.182 33.333 22.30 6.57 0.00 3.10
738 804 1.871039 CCGTTTGGTCGTCTGAATTGT 59.129 47.619 0.00 0.00 0.00 2.71
746 812 0.814812 TTTGGGTCCGTTTGGTCGTC 60.815 55.000 0.00 0.00 36.30 4.20
749 815 2.885894 TGTAATTTGGGTCCGTTTGGTC 59.114 45.455 0.00 0.00 36.30 4.02
757 823 3.446873 TGCATGTGATGTAATTTGGGTCC 59.553 43.478 0.00 0.00 0.00 4.46
780 846 2.534019 GGCGTGTATGGTGCATCCG 61.534 63.158 0.00 0.00 39.52 4.18
781 847 1.451207 TGGCGTGTATGGTGCATCC 60.451 57.895 0.00 0.00 0.00 3.51
782 848 1.024046 TGTGGCGTGTATGGTGCATC 61.024 55.000 0.00 0.00 0.00 3.91
783 849 0.607762 TTGTGGCGTGTATGGTGCAT 60.608 50.000 0.00 0.00 0.00 3.96
784 850 0.607762 ATTGTGGCGTGTATGGTGCA 60.608 50.000 0.00 0.00 0.00 4.57
785 851 0.525761 AATTGTGGCGTGTATGGTGC 59.474 50.000 0.00 0.00 0.00 5.01
786 852 2.083774 AGAATTGTGGCGTGTATGGTG 58.916 47.619 0.00 0.00 0.00 4.17
787 853 2.290008 TGAGAATTGTGGCGTGTATGGT 60.290 45.455 0.00 0.00 0.00 3.55
847 913 0.966920 AGAGGGAATGTCGTGTCGTT 59.033 50.000 0.00 0.00 0.00 3.85
894 960 0.770499 TTGATGCAGGTGGAGGTTGA 59.230 50.000 0.00 0.00 0.00 3.18
951 1017 0.764369 AGTGGAGTGGAGAGGCACAA 60.764 55.000 0.00 0.00 0.00 3.33
999 1070 1.414550 GCTCCCAGTCCTAGTTCCATC 59.585 57.143 0.00 0.00 0.00 3.51
1110 1181 2.203015 CGCATCCAGGTTACGGGG 60.203 66.667 0.00 0.00 32.25 5.73
1185 1257 2.049156 CGCGAGTGGCACTCAGAA 60.049 61.111 38.18 0.00 45.30 3.02
1194 1266 2.161486 GCTAGTTCTGCGCGAGTGG 61.161 63.158 12.10 0.00 0.00 4.00
1205 1277 2.347755 CCGCCTAAAAAGACGCTAGTTC 59.652 50.000 0.00 0.00 0.00 3.01
1279 1351 7.276218 CGAATCAACCAGTAATAACCGAAGTAA 59.724 37.037 0.00 0.00 0.00 2.24
1280 1352 6.753279 CGAATCAACCAGTAATAACCGAAGTA 59.247 38.462 0.00 0.00 0.00 2.24
1281 1353 5.579511 CGAATCAACCAGTAATAACCGAAGT 59.420 40.000 0.00 0.00 0.00 3.01
1294 1369 6.512415 GCATTAGGAAATCTCGAATCAACCAG 60.512 42.308 0.00 0.00 0.00 4.00
1316 1392 5.604565 TCTTGTCGACAATCAGATATGCAT 58.395 37.500 29.79 3.79 35.02 3.96
1320 1396 7.044181 ACACAATCTTGTCGACAATCAGATAT 58.956 34.615 29.79 17.26 39.91 1.63
1321 1397 6.398095 ACACAATCTTGTCGACAATCAGATA 58.602 36.000 29.79 12.48 39.91 1.98
1490 1568 4.923415 TGGGATCTCCTTCTTTTTCCTTC 58.077 43.478 0.00 0.00 36.20 3.46
1495 1573 6.382282 GGATCATTTGGGATCTCCTTCTTTTT 59.618 38.462 0.00 0.00 42.63 1.94
1496 1574 5.896106 GGATCATTTGGGATCTCCTTCTTTT 59.104 40.000 0.00 0.00 42.63 2.27
1500 1578 4.720775 AGGATCATTTGGGATCTCCTTC 57.279 45.455 0.00 0.00 42.63 3.46
1644 1722 5.824421 AGGTGAAATCTTGATCAACAGGAT 58.176 37.500 3.38 3.44 45.14 3.24
1741 1819 8.941977 AGAAATGTATTGATAAAGTACAACGCA 58.058 29.630 0.00 0.00 32.65 5.24
1753 1831 9.685276 AGACAACAATGGAGAAATGTATTGATA 57.315 29.630 0.00 0.00 35.21 2.15
1754 1832 8.585471 AGACAACAATGGAGAAATGTATTGAT 57.415 30.769 0.00 0.00 35.21 2.57
1755 1833 8.946085 GTAGACAACAATGGAGAAATGTATTGA 58.054 33.333 0.00 0.00 35.21 2.57
1756 1834 8.950210 AGTAGACAACAATGGAGAAATGTATTG 58.050 33.333 0.00 0.00 36.77 1.90
1757 1835 9.167311 GAGTAGACAACAATGGAGAAATGTATT 57.833 33.333 0.00 0.00 0.00 1.89
1770 1848 5.794894 ACGGAGAAATGAGTAGACAACAAT 58.205 37.500 0.00 0.00 0.00 2.71
1790 1868 6.893759 TCACATTCATAAAGTACAACAACGG 58.106 36.000 0.00 0.00 0.00 4.44
1791 1869 8.678510 GTTTCACATTCATAAAGTACAACAACG 58.321 33.333 0.00 0.00 0.00 4.10
1792 1870 9.509855 TGTTTCACATTCATAAAGTACAACAAC 57.490 29.630 0.00 0.00 0.00 3.32
1794 1872 9.729023 CTTGTTTCACATTCATAAAGTACAACA 57.271 29.630 0.00 0.00 0.00 3.33
1795 1873 9.730420 ACTTGTTTCACATTCATAAAGTACAAC 57.270 29.630 0.00 0.00 0.00 3.32
1801 1879 8.237267 GGGAGTACTTGTTTCACATTCATAAAG 58.763 37.037 0.00 0.00 0.00 1.85
1802 1880 7.942341 AGGGAGTACTTGTTTCACATTCATAAA 59.058 33.333 0.00 0.00 0.00 1.40
1803 1881 7.458397 AGGGAGTACTTGTTTCACATTCATAA 58.542 34.615 0.00 0.00 0.00 1.90
2029 2126 6.496338 ACCGTCCAAGAAAAAGAATCATAC 57.504 37.500 0.00 0.00 0.00 2.39
2136 2239 7.262048 AGTAAAAGAATTCTGGTTTCGCAAAA 58.738 30.769 9.17 0.00 0.00 2.44
2168 2631 8.725148 GGTGTTCATATTCTCTTATGCCATTAG 58.275 37.037 0.00 0.00 31.02 1.73
2294 2959 6.493115 ACTCATCAATGTTGTCAAACCCATAA 59.507 34.615 0.00 0.00 35.25 1.90
2498 3163 8.160106 AGTATAATAGCAATTCAAAGGAGGAGG 58.840 37.037 0.00 0.00 0.00 4.30
2500 3165 9.998106 GTAGTATAATAGCAATTCAAAGGAGGA 57.002 33.333 0.00 0.00 0.00 3.71
2630 3298 2.804527 CACTGCTCCCATTGTCATATCG 59.195 50.000 0.00 0.00 0.00 2.92
2638 3306 2.689983 GGTATTTCCACTGCTCCCATTG 59.310 50.000 0.00 0.00 35.97 2.82
2639 3307 2.582636 AGGTATTTCCACTGCTCCCATT 59.417 45.455 0.00 0.00 39.02 3.16
2640 3308 2.173569 GAGGTATTTCCACTGCTCCCAT 59.826 50.000 0.00 0.00 39.02 4.00
2641 3309 1.559682 GAGGTATTTCCACTGCTCCCA 59.440 52.381 0.00 0.00 39.02 4.37
2642 3310 1.134068 GGAGGTATTTCCACTGCTCCC 60.134 57.143 0.00 0.00 39.02 4.30
2643 3311 1.559682 TGGAGGTATTTCCACTGCTCC 59.440 52.381 0.00 0.00 42.24 4.70
2651 3319 5.302823 CCTTGAAATCCATGGAGGTATTTCC 59.697 44.000 25.39 14.12 41.31 3.13
2652 3320 5.302823 CCCTTGAAATCCATGGAGGTATTTC 59.697 44.000 23.19 23.19 41.31 2.17
2653 3321 5.211201 CCCTTGAAATCCATGGAGGTATTT 58.789 41.667 21.33 15.24 41.31 1.40
2654 3322 4.232820 ACCCTTGAAATCCATGGAGGTATT 59.767 41.667 21.33 12.07 41.31 1.89
2655 3323 3.793827 ACCCTTGAAATCCATGGAGGTAT 59.206 43.478 21.33 5.83 41.31 2.73
2737 3423 5.171339 AGGACAGCATCATTTGACTAAGT 57.829 39.130 0.00 0.00 0.00 2.24
2741 3427 4.225942 TCCTAAGGACAGCATCATTTGACT 59.774 41.667 0.00 0.00 32.44 3.41
2777 3463 6.580041 GTGCGCAGAAAATGATTTATGGATAG 59.420 38.462 12.22 0.00 38.03 2.08
2779 3465 5.068198 AGTGCGCAGAAAATGATTTATGGAT 59.932 36.000 12.22 0.00 38.03 3.41
2852 3538 5.661056 GGTTTTCCCTGAAAAGGATAAGG 57.339 43.478 2.42 0.00 41.32 2.69
2907 3593 0.632835 ATGGGTCAGGCCAATGTCAT 59.367 50.000 5.01 0.00 39.65 3.06
2987 3673 5.104485 GGTAAAGAGATCTTAAGAAGGCCCA 60.104 44.000 9.71 0.00 34.61 5.36
3101 4725 7.016153 AGAAATGTCAACTACTCCATACCAA 57.984 36.000 0.00 0.00 0.00 3.67
3107 4731 5.637810 CGCTTAAGAAATGTCAACTACTCCA 59.362 40.000 6.67 0.00 0.00 3.86
3143 4782 4.103357 ACGGAATAATCTCGTCAAACTCG 58.897 43.478 0.00 0.00 30.10 4.18
3164 4803 5.065218 CCTTCACTGCAAGAATGGTACATAC 59.935 44.000 0.00 0.00 40.39 2.39
3255 4895 6.210784 ACTTGTGTAACTAACTCTAGGATGCA 59.789 38.462 0.00 0.00 38.04 3.96
3425 5073 9.597170 CAATCATCTCCTGTTATCCTATACATG 57.403 37.037 0.00 0.00 0.00 3.21
3769 5499 5.582269 TGTGACTTAGCATCTTGATTAGCAC 59.418 40.000 0.00 0.00 0.00 4.40
3793 5523 4.219288 CAGCTTCTCTTTTTGGCAAGGTAT 59.781 41.667 0.00 0.00 0.00 2.73
3839 5569 3.002348 GCCGCATTGTACAGTTCTTATCC 59.998 47.826 0.00 0.00 0.00 2.59
3929 5661 8.183104 ACTAGCAAGCAGAGATACACATAATA 57.817 34.615 0.00 0.00 0.00 0.98
3957 5689 1.141657 CATCCTGGTCCCAATCGATGT 59.858 52.381 0.00 0.00 0.00 3.06
4171 6061 3.861131 GCCCTACATATAAGCCTCACACG 60.861 52.174 0.00 0.00 0.00 4.49
4269 6159 3.988379 TCACAGAACCAGCAATTTGTC 57.012 42.857 0.00 0.00 0.00 3.18
4371 6287 7.013178 TGTGCTTTCTGTTCATCAAATGTAAGA 59.987 33.333 0.00 0.00 0.00 2.10
4459 6375 5.007430 GTGTCATCTGCAAGGTCATATGAAG 59.993 44.000 7.07 0.00 33.35 3.02
4708 6627 4.398358 TGGTATTAGAAGTCGTCTCACCAG 59.602 45.833 10.69 0.00 37.66 4.00
4829 6748 4.457603 TCTTGTGGAAATACAAACCATCCG 59.542 41.667 0.00 0.00 39.81 4.18
5043 6962 4.584743 AGATGGAACTTTGTTTGGTCTTCC 59.415 41.667 0.00 0.00 0.00 3.46
5291 7210 2.777114 AGCCAACAGAAAATGGGGTTTT 59.223 40.909 0.00 0.00 42.56 2.43
5454 7379 8.862550 ATAGAAAAAGAAAGCTGAAAAGTGTG 57.137 30.769 0.00 0.00 0.00 3.82
5493 7418 7.064728 GCCTTTCATTTAGTAGTGTAACCAGAG 59.935 40.741 0.00 0.00 37.80 3.35
5494 7419 6.877322 GCCTTTCATTTAGTAGTGTAACCAGA 59.123 38.462 0.00 0.00 37.80 3.86
5516 7441 2.770802 AGACATGATGAGCTAGTTGCCT 59.229 45.455 0.00 0.00 44.23 4.75
5656 7581 6.591750 TTTCCTAACCAACTCACACAAAAA 57.408 33.333 0.00 0.00 0.00 1.94
5661 7586 9.836076 GTAATATTTTTCCTAACCAACTCACAC 57.164 33.333 0.00 0.00 0.00 3.82
5775 7701 3.636300 CAGGATCTTCTGAGACTGTAGGG 59.364 52.174 0.00 0.00 36.93 3.53
5799 7725 8.966868 TCCTATCACAATTTTAAAGGATTGGAC 58.033 33.333 14.24 0.00 37.53 4.02
5988 10185 9.903682 ACAAAAGATTACAGAACATGAATCTTG 57.096 29.630 14.91 9.29 40.70 3.02
6098 10295 7.829378 TCCGCTCTACTCTTTTTCTTAAATC 57.171 36.000 0.00 0.00 0.00 2.17
6148 10345 5.296780 AGGTAATATGTCCATGTTTTCGCAG 59.703 40.000 0.00 0.00 0.00 5.18
6178 10377 2.505866 CATTTTCGTAAACGCCAGCTC 58.494 47.619 0.00 0.00 39.60 4.09
6249 10448 2.903375 ATAGTACTCCCTCCGATCCC 57.097 55.000 0.00 0.00 0.00 3.85
6274 10473 7.769044 AGTAAGACAGGTTGCATATTCGTTAAT 59.231 33.333 0.00 0.00 0.00 1.40
6389 10588 0.546122 AGTGCCAGCATCCCGATTAA 59.454 50.000 0.00 0.00 0.00 1.40
6394 10593 2.110967 CAGAAGTGCCAGCATCCCG 61.111 63.158 0.00 0.00 0.00 5.14
6398 10597 1.202976 AGAAACCAGAAGTGCCAGCAT 60.203 47.619 0.00 0.00 0.00 3.79
6405 10604 3.179830 CGTATCGGAGAAACCAGAAGTG 58.820 50.000 0.00 0.00 43.58 3.16
6414 10613 1.870458 CACGCGCGTATCGGAGAAA 60.870 57.895 37.24 0.00 43.58 2.52
6419 10618 2.062890 GAAAGACACGCGCGTATCGG 62.063 60.000 37.24 25.32 38.94 4.18
6422 10621 0.109458 TCTGAAAGACACGCGCGTAT 60.109 50.000 37.24 28.16 38.67 3.06
6516 10715 3.127030 CGTATGCATCGCCTAGATACAGA 59.873 47.826 0.19 0.00 36.18 3.41
6517 10716 3.430008 CGTATGCATCGCCTAGATACAG 58.570 50.000 0.19 0.00 36.18 2.74
6518 10717 2.163613 CCGTATGCATCGCCTAGATACA 59.836 50.000 0.19 0.00 37.52 2.29
6519 10718 2.798680 CCGTATGCATCGCCTAGATAC 58.201 52.381 0.19 0.00 37.52 2.24
6520 10719 1.134367 GCCGTATGCATCGCCTAGATA 59.866 52.381 0.19 0.00 37.52 1.98
6521 10720 0.108615 GCCGTATGCATCGCCTAGAT 60.109 55.000 0.19 0.00 41.01 1.98
6525 10724 2.680974 AATGGCCGTATGCATCGCCT 62.681 55.000 24.73 13.00 43.89 5.52
6641 10840 2.663188 GCTATCTGCGCCCCTTCG 60.663 66.667 4.18 0.00 0.00 3.79
6688 10887 9.096823 TCCTTAAGTCTTAGATGTTAGGTTTGA 57.903 33.333 0.97 0.00 0.00 2.69
6708 10908 1.200519 CGTCCTGGATGGGTCCTTAA 58.799 55.000 8.09 0.00 45.32 1.85
6757 10957 4.828925 GCGGCCTCTGAGAGCACC 62.829 72.222 6.17 6.81 0.00 5.01
6869 11069 4.379243 CGCGCAAGGAGGAGGTGT 62.379 66.667 8.75 0.00 38.28 4.16
7055 11255 0.815095 TCTTGCACGGAGCTTCGATA 59.185 50.000 24.16 3.43 45.94 2.92
7057 11257 1.372997 GTCTTGCACGGAGCTTCGA 60.373 57.895 24.16 0.00 45.94 3.71
7083 11283 1.158466 TCAGAGGCAGGAGGTGGAA 59.842 57.895 0.00 0.00 0.00 3.53
7134 11334 1.337817 CTGCGGTGTCGTTTCTCTCG 61.338 60.000 0.00 0.00 38.89 4.04
7171 11371 2.196595 CCCTAGGATCTGGTGTTCCAA 58.803 52.381 11.48 0.00 43.81 3.53
7234 11434 2.462456 TATCTTGATGGAGGCATCGC 57.538 50.000 0.00 0.00 34.46 4.58
7251 11451 1.484356 GCGGCATTCTACGTCGTTAT 58.516 50.000 1.78 0.00 0.00 1.89
7299 11499 1.724148 TTGGGGAGACATGGTTGCCA 61.724 55.000 10.58 0.00 38.19 4.92
7323 11525 1.427753 TCCATCATCTAGTCCCGGCTA 59.572 52.381 0.00 0.00 0.00 3.93
7416 11622 0.522180 ACTTCATCTCGCGTCGTCTT 59.478 50.000 5.77 0.00 0.00 3.01
7554 11760 2.766651 GTGGGTGGGCCGGATCTA 60.767 66.667 5.05 0.00 34.97 1.98
7705 11911 7.879070 TGAACTACTTCTTGTGTATTACTCGT 58.121 34.615 0.00 0.00 0.00 4.18
7744 11953 1.816074 TCCCCTGCGACATAAACAAC 58.184 50.000 0.00 0.00 0.00 3.32
7747 11956 3.279434 AGATTTCCCCTGCGACATAAAC 58.721 45.455 0.00 0.00 0.00 2.01
7849 12058 3.441496 TGAGTGTTTTCGTACGAAGGT 57.559 42.857 27.72 13.56 35.38 3.50
7902 12111 0.820871 CTTCCTCGAGGAGACCAAGG 59.179 60.000 31.81 8.73 46.36 3.61
7979 12188 1.151668 CGTGAGGAAGTCTGGCAAAG 58.848 55.000 0.00 0.00 0.00 2.77
8015 12232 2.407562 TCATGGGATTGCAGTAGGCTA 58.592 47.619 0.00 0.00 45.15 3.93
8042 12259 3.430513 GCTGTTCAGGGTAGTAGGCTTAC 60.431 52.174 0.00 0.00 0.00 2.34
8044 12261 1.555533 GCTGTTCAGGGTAGTAGGCTT 59.444 52.381 0.00 0.00 0.00 4.35
8046 12263 0.179108 CGCTGTTCAGGGTAGTAGGC 60.179 60.000 8.41 0.00 0.00 3.93
8047 12264 1.135083 CACGCTGTTCAGGGTAGTAGG 60.135 57.143 19.12 6.17 33.53 3.18
8048 12265 1.816835 TCACGCTGTTCAGGGTAGTAG 59.183 52.381 19.12 9.54 33.53 2.57
8049 12266 1.913778 TCACGCTGTTCAGGGTAGTA 58.086 50.000 19.12 8.02 33.53 1.82
8051 12268 1.429463 GTTCACGCTGTTCAGGGTAG 58.571 55.000 19.12 14.23 33.53 3.18
8052 12269 0.034337 GGTTCACGCTGTTCAGGGTA 59.966 55.000 19.12 5.52 33.53 3.69
8053 12270 1.227853 GGTTCACGCTGTTCAGGGT 60.228 57.895 15.04 15.04 35.26 4.34
8054 12271 0.535102 AAGGTTCACGCTGTTCAGGG 60.535 55.000 13.85 13.85 0.00 4.45
8195 12474 1.069973 TCAGCGCATTTGAGTGTTTCG 60.070 47.619 11.47 0.00 0.00 3.46
8317 12601 5.783100 AACATTTGTCAAAGTTTGCACAG 57.217 34.783 10.90 7.31 0.00 3.66
8329 12613 3.737663 GCAGGCACTCAAAACATTTGTCA 60.738 43.478 3.06 0.00 34.60 3.58
8330 12614 2.796593 GCAGGCACTCAAAACATTTGTC 59.203 45.455 3.06 0.00 34.60 3.18
8362 12646 3.941483 ACTCCCACGAATGTCATTTCATC 59.059 43.478 0.00 0.00 0.00 2.92
8400 12685 6.806739 GCTATTTACGAAAGCATTTTGGAGTT 59.193 34.615 0.00 0.00 43.86 3.01
8416 12701 7.727955 TCAATGTTGCAAAAATGCTATTTACG 58.272 30.769 0.00 0.00 35.49 3.18
8502 12787 6.175712 TGCCAAACTTTGACAAATGTTTTC 57.824 33.333 18.03 14.78 40.02 2.29
8506 12791 6.566197 TTTTTGCCAAACTTTGACAAATGT 57.434 29.167 14.44 0.00 41.50 2.71
8581 12868 4.400251 CCCAAGCTCAAATGCTCTTTGATA 59.600 41.667 13.15 0.00 43.24 2.15
8587 12874 1.353694 ACTCCCAAGCTCAAATGCTCT 59.646 47.619 0.00 0.00 43.24 4.09
8589 12876 2.573462 TCTACTCCCAAGCTCAAATGCT 59.427 45.455 0.00 0.00 46.40 3.79
8621 12908 4.901197 TTATGCGGCCCTTCTATATCAA 57.099 40.909 0.00 0.00 0.00 2.57
8623 12910 5.066505 CCATTTTATGCGGCCCTTCTATATC 59.933 44.000 0.00 0.00 0.00 1.63
8661 12948 3.364441 GGCATGCCGAAGTGTGCA 61.364 61.111 23.48 0.00 42.52 4.57
8663 12950 0.244450 AAATGGCATGCCGAAGTGTG 59.756 50.000 30.87 0.00 39.42 3.82
8673 12960 4.037208 CCAAGGCTTCTAGTAAATGGCATG 59.963 45.833 0.00 0.00 0.00 4.06
8690 12977 1.142965 AACAAAACACGCCCAAGGC 59.857 52.632 0.00 0.00 46.75 4.35
8691 12978 1.151172 GCAACAAAACACGCCCAAGG 61.151 55.000 0.00 0.00 0.00 3.61
8692 12979 0.179113 AGCAACAAAACACGCCCAAG 60.179 50.000 0.00 0.00 0.00 3.61
8761 13066 2.607038 GCAAAACACGTCCAATCCTTCC 60.607 50.000 0.00 0.00 0.00 3.46
8784 13089 3.876914 TCTAGTTCAAACAACACCAGCAG 59.123 43.478 0.00 0.00 0.00 4.24
8785 13090 3.879998 TCTAGTTCAAACAACACCAGCA 58.120 40.909 0.00 0.00 0.00 4.41
8789 13094 5.468746 TGCACTATCTAGTTCAAACAACACC 59.531 40.000 0.00 0.00 33.46 4.16
8790 13095 6.202954 ACTGCACTATCTAGTTCAAACAACAC 59.797 38.462 0.00 0.00 33.46 3.32
8792 13097 6.787085 ACTGCACTATCTAGTTCAAACAAC 57.213 37.500 0.00 0.00 33.46 3.32
8822 13134 4.394729 ACCAGCCGAAGACATTCTAAAAA 58.605 39.130 0.00 0.00 32.93 1.94
8823 13135 4.015872 ACCAGCCGAAGACATTCTAAAA 57.984 40.909 0.00 0.00 32.93 1.52
8824 13136 3.695830 ACCAGCCGAAGACATTCTAAA 57.304 42.857 0.00 0.00 32.93 1.85
8825 13137 3.695830 AACCAGCCGAAGACATTCTAA 57.304 42.857 0.00 0.00 32.93 2.10
8826 13138 3.695830 AAACCAGCCGAAGACATTCTA 57.304 42.857 0.00 0.00 32.93 2.10
8828 13140 3.643159 AAAAACCAGCCGAAGACATTC 57.357 42.857 0.00 0.00 0.00 2.67
8863 13175 5.344743 TTTCTTCTATGTCTACCTGCTGG 57.655 43.478 8.29 8.29 39.83 4.85
8875 13187 9.994432 ATTTAGTGATTTCGCTTTTCTTCTATG 57.006 29.630 0.00 0.00 37.87 2.23
8879 13191 9.278734 CCTTATTTAGTGATTTCGCTTTTCTTC 57.721 33.333 0.00 0.00 37.87 2.87
8905 13217 6.103330 GGAGTGATCTTTGAAAGGAGTACTC 58.897 44.000 14.87 14.87 0.00 2.59
8907 13219 5.179533 GGGAGTGATCTTTGAAAGGAGTAC 58.820 45.833 4.94 0.58 0.00 2.73
8912 13224 2.310052 AGGGGGAGTGATCTTTGAAAGG 59.690 50.000 4.94 0.00 0.00 3.11
8922 13234 2.138236 AACCTGGGAGGGGGAGTGAT 62.138 60.000 0.00 0.00 40.58 3.06
8929 13241 1.715019 TTGTCACAACCTGGGAGGGG 61.715 60.000 0.00 0.00 40.58 4.79
8932 13244 1.597742 CACTTGTCACAACCTGGGAG 58.402 55.000 0.00 0.00 25.25 4.30
8934 13246 0.182537 TCCACTTGTCACAACCTGGG 59.817 55.000 8.95 0.00 0.00 4.45
8935 13247 1.134098 ACTCCACTTGTCACAACCTGG 60.134 52.381 3.74 3.74 0.00 4.45
8944 13256 1.949525 ACATGCAACACTCCACTTGTC 59.050 47.619 0.00 0.00 0.00 3.18
8949 13261 1.081906 CGCACATGCAACACTCCAC 60.082 57.895 4.49 0.00 42.21 4.02
8953 13265 0.815213 AGTGACGCACATGCAACACT 60.815 50.000 19.96 19.96 45.12 3.55
8957 13269 0.307453 GACAAGTGACGCACATGCAA 59.693 50.000 12.77 0.00 36.67 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.