Multiple sequence alignment - TraesCS6D01G199500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G199500 chr6D 100.000 2913 0 0 1 2913 277268297 277265385 0.000000e+00 5380.0
1 TraesCS6D01G199500 chr6D 93.249 474 25 2 205 671 445064269 445063796 0.000000e+00 691.0
2 TraesCS6D01G199500 chr6D 94.091 220 12 1 2032 2251 217731943 217732161 1.670000e-87 333.0
3 TraesCS6D01G199500 chr6D 93.506 77 5 0 1 77 445064464 445064388 6.600000e-22 115.0
4 TraesCS6D01G199500 chr6A 93.933 1368 43 12 682 2033 398168252 398166909 0.000000e+00 2030.0
5 TraesCS6D01G199500 chr6B 92.544 1368 56 19 674 2028 439075934 439077268 0.000000e+00 1919.0
6 TraesCS6D01G199500 chr6B 91.387 476 25 3 205 673 646264805 646264339 3.170000e-179 638.0
7 TraesCS6D01G199500 chr6B 85.801 331 26 9 2598 2913 652648418 652648742 6.020000e-87 331.0
8 TraesCS6D01G199500 chr6B 88.281 128 15 0 56 183 698405991 698406118 1.400000e-33 154.0
9 TraesCS6D01G199500 chr7D 97.485 676 11 2 2 673 10484989 10484316 0.000000e+00 1149.0
10 TraesCS6D01G199500 chr7D 94.545 220 10 2 2032 2251 5479935 5480152 3.600000e-89 339.0
11 TraesCS6D01G199500 chr7D 94.545 220 11 1 2032 2251 62255375 62255593 3.600000e-89 339.0
12 TraesCS6D01G199500 chr7D 89.844 128 13 0 56 183 621745026 621744899 6.460000e-37 165.0
13 TraesCS6D01G199500 chr4A 91.449 421 18 8 283 687 710747856 710748274 1.960000e-156 562.0
14 TraesCS6D01G199500 chr4A 87.603 484 24 16 205 673 112842907 112843369 1.990000e-146 529.0
15 TraesCS6D01G199500 chr4A 90.037 271 19 1 1623 1893 590305517 590305779 7.730000e-91 344.0
16 TraesCS6D01G199500 chr4A 92.766 235 16 1 2025 2259 511013910 511014143 3.600000e-89 339.0
17 TraesCS6D01G199500 chr4A 86.441 295 14 7 2645 2913 701880307 701880601 1.700000e-77 300.0
18 TraesCS6D01G199500 chr4A 94.815 135 7 0 206 340 710747725 710747859 8.180000e-51 211.0
19 TraesCS6D01G199500 chr4A 84.390 205 11 8 1 184 112842245 112842449 6.410000e-42 182.0
20 TraesCS6D01G199500 chr4A 97.101 69 2 0 1 69 710747285 710747353 1.830000e-22 117.0
21 TraesCS6D01G199500 chr7A 87.603 484 22 11 205 673 619639633 619639173 7.150000e-146 527.0
22 TraesCS6D01G199500 chr7A 87.164 483 24 11 205 672 686027908 686027449 5.570000e-142 514.0
23 TraesCS6D01G199500 chr7A 84.878 205 10 8 1 184 619640296 619640092 1.380000e-43 187.0
24 TraesCS6D01G199500 chr7A 83.415 205 13 8 1 184 686028570 686028366 1.390000e-38 171.0
25 TraesCS6D01G199500 chr7A 81.301 123 17 6 2476 2597 694501308 694501191 8.590000e-16 95.3
26 TraesCS6D01G199500 chr7A 97.826 46 1 0 2251 2296 18608151 18608196 2.410000e-11 80.5
27 TraesCS6D01G199500 chr7A 97.727 44 1 0 2253 2296 609127992 609128035 3.110000e-10 76.8
28 TraesCS6D01G199500 chr3B 89.976 409 23 10 283 673 806764538 806764130 2.000000e-141 512.0
29 TraesCS6D01G199500 chr3B 85.542 332 28 9 2598 2913 792723497 792723170 2.160000e-86 329.0
30 TraesCS6D01G199500 chr3B 92.754 138 10 0 206 343 806764669 806764532 1.770000e-47 200.0
31 TraesCS6D01G199500 chr2B 89.976 409 23 10 283 673 567587961 567588369 2.000000e-141 512.0
32 TraesCS6D01G199500 chr2B 85.625 320 34 8 2598 2913 73972351 73972662 2.800000e-85 326.0
33 TraesCS6D01G199500 chr2B 94.074 135 8 0 206 340 567587830 567587964 3.810000e-49 206.0
34 TraesCS6D01G199500 chr2B 96.104 77 3 0 2347 2423 157144407 157144483 3.050000e-25 126.0
35 TraesCS6D01G199500 chr2B 97.727 44 1 0 2253 2296 707243259 707243302 3.110000e-10 76.8
36 TraesCS6D01G199500 chr3A 94.340 318 16 1 2598 2913 655578034 655578351 1.210000e-133 486.0
37 TraesCS6D01G199500 chr3A 94.248 226 12 1 2026 2251 535225517 535225741 7.730000e-91 344.0
38 TraesCS6D01G199500 chr3A 83.505 194 20 7 1 183 681728100 681727908 1.390000e-38 171.0
39 TraesCS6D01G199500 chr3A 96.078 51 1 1 2246 2296 655577777 655577826 6.690000e-12 82.4
40 TraesCS6D01G199500 chr1A 90.994 322 23 6 2598 2913 488216652 488216331 2.070000e-116 429.0
41 TraesCS6D01G199500 chr1A 100.000 46 0 0 2251 2296 488216906 488216861 5.170000e-13 86.1
42 TraesCS6D01G199500 chr2A 94.545 220 11 1 2032 2251 258346965 258346747 3.600000e-89 339.0
43 TraesCS6D01G199500 chr2A 93.013 229 14 2 2026 2253 763213596 763213823 1.670000e-87 333.0
44 TraesCS6D01G199500 chr2A 78.673 422 74 14 1496 1912 590965764 590965354 1.720000e-67 267.0
45 TraesCS6D01G199500 chr1D 93.392 227 13 2 2025 2251 182614696 182614472 4.650000e-88 335.0
46 TraesCS6D01G199500 chr4B 92.952 227 13 3 2027 2251 530233910 530234135 7.780000e-86 327.0
47 TraesCS6D01G199500 chr4B 85.366 328 28 9 2601 2913 449652387 449652065 3.620000e-84 322.0
48 TraesCS6D01G199500 chr4B 82.704 318 39 10 2601 2912 648691648 648691341 4.780000e-68 268.0
49 TraesCS6D01G199500 chr4B 91.736 121 10 0 63 183 312082999 312082879 4.990000e-38 169.0
50 TraesCS6D01G199500 chr4B 91.525 59 5 0 2 60 440447120 440447062 6.690000e-12 82.4
51 TraesCS6D01G199500 chr4B 95.455 44 2 0 2252 2295 648691930 648691887 1.450000e-08 71.3
52 TraesCS6D01G199500 chr7B 83.596 317 44 6 2601 2913 731895000 731894688 1.020000e-74 291.0
53 TraesCS6D01G199500 chr7B 97.826 46 1 0 2251 2296 74328446 74328491 2.410000e-11 80.5
54 TraesCS6D01G199500 chr5A 90.152 132 12 1 2598 2728 472482173 472482304 1.390000e-38 171.0
55 TraesCS6D01G199500 chr4D 86.232 138 19 0 46 183 432750674 432750537 1.810000e-32 150.0
56 TraesCS6D01G199500 chr4D 95.946 74 3 0 2350 2423 64192914 64192841 1.420000e-23 121.0
57 TraesCS6D01G199500 chr4D 93.750 80 5 0 2344 2423 455092657 455092736 1.420000e-23 121.0
58 TraesCS6D01G199500 chr4D 84.058 69 11 0 1 69 465057946 465058014 1.870000e-07 67.6
59 TraesCS6D01G199500 chr3D 95.946 74 3 0 2350 2423 506915859 506915786 1.420000e-23 121.0
60 TraesCS6D01G199500 chr3D 76.692 133 23 7 2745 2875 296033958 296033832 1.870000e-07 67.6
61 TraesCS6D01G199500 chr5D 87.850 107 3 2 2436 2542 558629834 558629738 1.830000e-22 117.0
62 TraesCS6D01G199500 chr5D 93.333 75 5 0 2349 2423 558632871 558632797 8.530000e-21 111.0
63 TraesCS6D01G199500 chrUn 93.548 62 4 0 2369 2430 74787151 74787212 3.090000e-15 93.5
64 TraesCS6D01G199500 chr1B 97.872 47 1 0 2250 2296 592638032 592637986 6.690000e-12 82.4
65 TraesCS6D01G199500 chr5B 97.826 46 1 0 2251 2296 589467421 589467376 2.410000e-11 80.5
66 TraesCS6D01G199500 chr5B 87.500 64 8 0 2 65 421452276 421452339 1.120000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G199500 chr6D 277265385 277268297 2912 True 5380.000000 5380 100.0000 1 2913 1 chr6D.!!$R1 2912
1 TraesCS6D01G199500 chr6D 445063796 445064464 668 True 403.000000 691 93.3775 1 671 2 chr6D.!!$R2 670
2 TraesCS6D01G199500 chr6A 398166909 398168252 1343 True 2030.000000 2030 93.9330 682 2033 1 chr6A.!!$R1 1351
3 TraesCS6D01G199500 chr6B 439075934 439077268 1334 False 1919.000000 1919 92.5440 674 2028 1 chr6B.!!$F1 1354
4 TraesCS6D01G199500 chr7D 10484316 10484989 673 True 1149.000000 1149 97.4850 2 673 1 chr7D.!!$R1 671
5 TraesCS6D01G199500 chr4A 112842245 112843369 1124 False 355.500000 529 85.9965 1 673 2 chr4A.!!$F4 672
6 TraesCS6D01G199500 chr4A 710747285 710748274 989 False 296.666667 562 94.4550 1 687 3 chr4A.!!$F5 686
7 TraesCS6D01G199500 chr7A 619639173 619640296 1123 True 357.000000 527 86.2405 1 673 2 chr7A.!!$R2 672
8 TraesCS6D01G199500 chr7A 686027449 686028570 1121 True 342.500000 514 85.2895 1 672 2 chr7A.!!$R3 671
9 TraesCS6D01G199500 chr3B 806764130 806764669 539 True 356.000000 512 91.3650 206 673 2 chr3B.!!$R2 467
10 TraesCS6D01G199500 chr2B 567587830 567588369 539 False 359.000000 512 92.0250 206 673 2 chr2B.!!$F4 467
11 TraesCS6D01G199500 chr3A 655577777 655578351 574 False 284.200000 486 95.2090 2246 2913 2 chr3A.!!$F2 667
12 TraesCS6D01G199500 chr1A 488216331 488216906 575 True 257.550000 429 95.4970 2251 2913 2 chr1A.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1591 0.169009 GCCACAAAGCCAACGATCTC 59.831 55.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 3319 0.034863 GTGGCGGACCCAGGAATTAA 60.035 55.0 0.0 0.0 46.54 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 743 3.827898 GCTCCGGCAGTAGCTCGT 61.828 66.667 5.64 0.00 41.70 4.18
376 972 0.317479 ACTCGTAGCTTCAACGGCTT 59.683 50.000 7.61 0.00 40.68 4.35
731 1348 2.507110 TACGCAGCTGGAGTGAAGCC 62.507 60.000 17.12 0.00 41.82 4.35
822 1440 1.003718 CCCTCGTTGGACTTGGACC 60.004 63.158 0.00 0.00 38.35 4.46
854 1472 2.146342 CGCTCACACAAAGAGGTCATT 58.854 47.619 0.00 0.00 33.72 2.57
904 1523 4.258702 ACCCTATATAAACAGCAGCGAG 57.741 45.455 0.00 0.00 0.00 5.03
929 1548 3.920446 TCGGAAACTTGACATCGATCAA 58.080 40.909 0.00 0.00 37.08 2.57
938 1557 4.313277 TGACATCGATCAAGGATCAGAC 57.687 45.455 0.00 0.00 38.84 3.51
939 1558 3.243201 TGACATCGATCAAGGATCAGACG 60.243 47.826 0.00 0.00 38.84 4.18
940 1559 2.952310 ACATCGATCAAGGATCAGACGA 59.048 45.455 0.00 0.00 38.84 4.20
941 1560 3.243234 ACATCGATCAAGGATCAGACGAC 60.243 47.826 0.00 0.00 38.84 4.34
942 1561 2.365582 TCGATCAAGGATCAGACGACA 58.634 47.619 6.98 0.00 38.84 4.35
943 1562 2.097629 TCGATCAAGGATCAGACGACAC 59.902 50.000 6.98 0.00 38.84 3.67
944 1563 2.455032 GATCAAGGATCAGACGACACG 58.545 52.381 0.00 0.00 38.77 4.49
945 1564 1.530323 TCAAGGATCAGACGACACGA 58.470 50.000 0.00 0.00 0.00 4.35
946 1565 1.468914 TCAAGGATCAGACGACACGAG 59.531 52.381 0.00 0.00 0.00 4.18
947 1566 0.171455 AAGGATCAGACGACACGAGC 59.829 55.000 0.00 0.00 0.00 5.03
948 1567 0.678366 AGGATCAGACGACACGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
949 1568 1.015109 GGATCAGACGACACGAGCTA 58.985 55.000 0.00 0.00 0.00 3.32
950 1569 1.003331 GGATCAGACGACACGAGCTAG 60.003 57.143 0.00 0.00 0.00 3.42
959 1578 1.201647 GACACGAGCTAGTAGCCACAA 59.798 52.381 18.65 0.00 43.77 3.33
963 1582 1.657822 GAGCTAGTAGCCACAAAGCC 58.342 55.000 18.65 0.00 43.77 4.35
965 1584 1.351017 AGCTAGTAGCCACAAAGCCAA 59.649 47.619 18.65 0.00 43.77 4.52
966 1585 1.468914 GCTAGTAGCCACAAAGCCAAC 59.531 52.381 11.33 0.00 34.48 3.77
967 1586 1.732259 CTAGTAGCCACAAAGCCAACG 59.268 52.381 0.00 0.00 0.00 4.10
969 1588 1.165270 GTAGCCACAAAGCCAACGAT 58.835 50.000 0.00 0.00 0.00 3.73
970 1589 1.130561 GTAGCCACAAAGCCAACGATC 59.869 52.381 0.00 0.00 0.00 3.69
971 1590 0.250901 AGCCACAAAGCCAACGATCT 60.251 50.000 0.00 0.00 0.00 2.75
972 1591 0.169009 GCCACAAAGCCAACGATCTC 59.831 55.000 0.00 0.00 0.00 2.75
973 1592 0.443869 CCACAAAGCCAACGATCTCG 59.556 55.000 0.00 0.00 46.33 4.04
974 1593 1.428448 CACAAAGCCAACGATCTCGA 58.572 50.000 6.60 0.00 43.02 4.04
975 1594 1.126846 CACAAAGCCAACGATCTCGAC 59.873 52.381 6.60 0.00 43.02 4.20
976 1595 0.721718 CAAAGCCAACGATCTCGACC 59.278 55.000 6.60 0.00 43.02 4.79
977 1596 0.736325 AAAGCCAACGATCTCGACCG 60.736 55.000 6.60 0.00 43.02 4.79
1446 2081 4.883083 ACAGTTCACCACGCCTATATATG 58.117 43.478 0.00 0.00 0.00 1.78
1449 2084 6.093404 CAGTTCACCACGCCTATATATGTAG 58.907 44.000 0.00 0.00 0.00 2.74
1450 2085 5.773680 AGTTCACCACGCCTATATATGTAGT 59.226 40.000 5.85 0.00 0.00 2.73
1464 2109 0.114364 TGTAGTCCTGAGCCCTGACA 59.886 55.000 0.00 0.00 0.00 3.58
1642 2287 2.996153 TACAACTACGGGGCGGCA 60.996 61.111 12.47 0.00 0.00 5.69
1798 2443 0.105862 CCACCATCAGGGCCATCAAT 60.106 55.000 6.18 0.00 42.05 2.57
1920 2569 2.103373 CCTCACCTGCTAAGCTCACTA 58.897 52.381 0.00 0.00 0.00 2.74
1922 2571 3.243704 CCTCACCTGCTAAGCTCACTATC 60.244 52.174 0.00 0.00 0.00 2.08
2043 2698 9.591792 ACCTGTTAATTTAATACTACCTTCGTC 57.408 33.333 0.00 0.00 0.00 4.20
2044 2699 9.813446 CCTGTTAATTTAATACTACCTTCGTCT 57.187 33.333 0.00 0.00 0.00 4.18
2046 2701 9.507280 TGTTAATTTAATACTACCTTCGTCTCG 57.493 33.333 0.00 0.00 0.00 4.04
2047 2702 9.722056 GTTAATTTAATACTACCTTCGTCTCGA 57.278 33.333 0.00 0.00 0.00 4.04
2049 2704 8.798748 AATTTAATACTACCTTCGTCTCGATG 57.201 34.615 0.00 0.00 35.23 3.84
2050 2705 7.558161 TTTAATACTACCTTCGTCTCGATGA 57.442 36.000 6.61 0.00 35.23 2.92
2051 2706 7.558161 TTAATACTACCTTCGTCTCGATGAA 57.442 36.000 6.61 1.98 35.23 2.57
2052 2707 6.636562 AATACTACCTTCGTCTCGATGAAT 57.363 37.500 2.33 0.00 35.94 2.57
2053 2708 7.741027 AATACTACCTTCGTCTCGATGAATA 57.259 36.000 2.33 0.00 35.94 1.75
2054 2709 7.741027 ATACTACCTTCGTCTCGATGAATAA 57.259 36.000 2.33 0.00 35.94 1.40
2055 2710 6.062434 ACTACCTTCGTCTCGATGAATAAG 57.938 41.667 2.33 3.84 35.94 1.73
2056 2711 4.985538 ACCTTCGTCTCGATGAATAAGT 57.014 40.909 2.33 0.00 35.94 2.24
2057 2712 4.922719 ACCTTCGTCTCGATGAATAAGTC 58.077 43.478 2.33 0.00 35.94 3.01
2058 2713 4.398358 ACCTTCGTCTCGATGAATAAGTCA 59.602 41.667 2.33 0.00 41.67 3.41
2073 2728 8.803201 TGAATAAGTCATTCGCATAGTTCTAG 57.197 34.615 0.00 0.00 45.25 2.43
2074 2729 8.630037 TGAATAAGTCATTCGCATAGTTCTAGA 58.370 33.333 0.00 0.00 45.25 2.43
2075 2730 9.632807 GAATAAGTCATTCGCATAGTTCTAGAT 57.367 33.333 0.00 0.00 34.04 1.98
2076 2731 9.632807 AATAAGTCATTCGCATAGTTCTAGATC 57.367 33.333 0.00 0.00 0.00 2.75
2077 2732 5.694816 AGTCATTCGCATAGTTCTAGATCG 58.305 41.667 0.00 0.00 0.00 3.69
2078 2733 5.470437 AGTCATTCGCATAGTTCTAGATCGA 59.530 40.000 0.00 0.00 0.00 3.59
2079 2734 5.566016 GTCATTCGCATAGTTCTAGATCGAC 59.434 44.000 0.00 0.00 0.00 4.20
2080 2735 3.790212 TCGCATAGTTCTAGATCGACG 57.210 47.619 0.00 0.00 0.00 5.12
2081 2736 3.387397 TCGCATAGTTCTAGATCGACGA 58.613 45.455 0.00 0.00 0.00 4.20
2082 2737 3.995048 TCGCATAGTTCTAGATCGACGAT 59.005 43.478 10.78 10.78 0.00 3.73
2083 2738 4.451435 TCGCATAGTTCTAGATCGACGATT 59.549 41.667 12.40 4.93 0.00 3.34
2084 2739 5.049612 TCGCATAGTTCTAGATCGACGATTT 60.050 40.000 12.40 9.05 0.00 2.17
2085 2740 6.146673 TCGCATAGTTCTAGATCGACGATTTA 59.853 38.462 12.40 9.78 0.00 1.40
2086 2741 6.795593 CGCATAGTTCTAGATCGACGATTTAA 59.204 38.462 12.40 1.84 0.00 1.52
2087 2742 7.201165 CGCATAGTTCTAGATCGACGATTTAAC 60.201 40.741 12.40 12.96 0.00 2.01
2088 2743 7.804129 GCATAGTTCTAGATCGACGATTTAACT 59.196 37.037 12.40 18.28 0.00 2.24
2092 2747 9.275398 AGTTCTAGATCGACGATTTAACTATCT 57.725 33.333 12.40 5.24 0.00 1.98
2153 2808 8.617290 AAAAACTTACATCCGTGTAGAAATCT 57.383 30.769 0.00 0.00 41.56 2.40
2154 2809 9.715121 AAAAACTTACATCCGTGTAGAAATCTA 57.285 29.630 0.00 0.00 41.56 1.98
2155 2810 8.928270 AAACTTACATCCGTGTAGAAATCTAG 57.072 34.615 0.00 0.00 41.56 2.43
2156 2811 7.642082 ACTTACATCCGTGTAGAAATCTAGT 57.358 36.000 0.00 0.00 41.56 2.57
2157 2812 7.481642 ACTTACATCCGTGTAGAAATCTAGTG 58.518 38.462 0.00 0.00 41.56 2.74
2158 2813 7.338703 ACTTACATCCGTGTAGAAATCTAGTGA 59.661 37.037 0.00 0.00 41.56 3.41
2159 2814 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
2160 2815 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
2161 2816 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
2162 2817 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
2163 2818 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
2164 2819 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
2165 2820 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
2204 2859 9.784531 ATCACATATTTAGTTCCTCAAATCGAT 57.215 29.630 0.00 0.00 0.00 3.59
2205 2860 9.045223 TCACATATTTAGTTCCTCAAATCGATG 57.955 33.333 0.00 0.00 0.00 3.84
2206 2861 9.045223 CACATATTTAGTTCCTCAAATCGATGA 57.955 33.333 0.00 0.00 0.00 2.92
2207 2862 9.046296 ACATATTTAGTTCCTCAAATCGATGAC 57.954 33.333 0.00 0.00 0.00 3.06
2208 2863 6.927294 ATTTAGTTCCTCAAATCGATGACC 57.073 37.500 0.00 0.00 0.00 4.02
2209 2864 5.677319 TTAGTTCCTCAAATCGATGACCT 57.323 39.130 0.00 0.00 0.00 3.85
2210 2865 6.785337 TTAGTTCCTCAAATCGATGACCTA 57.215 37.500 0.00 0.00 0.00 3.08
2211 2866 5.269505 AGTTCCTCAAATCGATGACCTAG 57.730 43.478 0.00 0.00 0.00 3.02
2212 2867 4.956700 AGTTCCTCAAATCGATGACCTAGA 59.043 41.667 0.00 0.00 0.00 2.43
2213 2868 5.422331 AGTTCCTCAAATCGATGACCTAGAA 59.578 40.000 0.00 0.00 0.00 2.10
2214 2869 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
2215 2870 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
2216 2871 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
2217 2872 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
2218 2873 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
2219 2874 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
2220 2875 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
2221 2876 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
2222 2877 2.348685 CGATGACCTAGAACTACGCGAG 60.349 54.545 15.93 8.73 0.00 5.03
2245 2900 5.531122 TGATTTATTCACCTAGACGGAGG 57.469 43.478 0.00 0.00 42.89 4.30
2294 2978 7.497249 CAGCTAGCTGAGTTTTAATTATGGTCT 59.503 37.037 36.47 0.00 46.30 3.85
2300 2984 7.624360 TGAGTTTTAATTATGGTCTCGCATT 57.376 32.000 0.00 0.00 0.00 3.56
2320 3004 5.220662 GCATTAGATTGTAGTCATTGTGCGT 60.221 40.000 0.00 0.00 0.00 5.24
2328 3012 3.334583 AGTCATTGTGCGTTATGTCCT 57.665 42.857 0.00 0.00 0.00 3.85
2334 3018 1.407618 TGTGCGTTATGTCCTAGCGAT 59.592 47.619 0.00 0.00 36.26 4.58
2338 3022 1.419374 GTTATGTCCTAGCGATGCGG 58.581 55.000 0.00 0.00 0.00 5.69
2340 3024 1.460273 TATGTCCTAGCGATGCGGCA 61.460 55.000 4.58 4.58 34.64 5.69
2342 3026 3.457263 TCCTAGCGATGCGGCACA 61.457 61.111 4.03 0.00 34.64 4.57
2343 3027 2.280389 CCTAGCGATGCGGCACAT 60.280 61.111 4.03 0.00 43.54 3.21
2345 3029 2.588596 TAGCGATGCGGCACATGG 60.589 61.111 4.03 0.00 39.84 3.66
2349 3033 4.820744 GATGCGGCACATGGGGGT 62.821 66.667 4.03 0.00 39.84 4.95
2364 3048 3.391382 GGTGACCGGGTGAGGGAG 61.391 72.222 3.30 0.00 35.02 4.30
2366 3050 2.037367 TGACCGGGTGAGGGAGAG 59.963 66.667 3.30 0.00 35.02 3.20
2367 3051 2.359404 GACCGGGTGAGGGAGAGA 59.641 66.667 3.30 0.00 35.02 3.10
2368 3052 1.305046 GACCGGGTGAGGGAGAGAA 60.305 63.158 3.30 0.00 35.02 2.87
2369 3053 0.903454 GACCGGGTGAGGGAGAGAAA 60.903 60.000 3.30 0.00 35.02 2.52
2372 3056 0.685097 CGGGTGAGGGAGAGAAACAA 59.315 55.000 0.00 0.00 0.00 2.83
2375 3116 2.106684 GGGTGAGGGAGAGAAACAAGTT 59.893 50.000 0.00 0.00 0.00 2.66
2383 3127 2.294512 GAGAGAAACAAGTTTGGGCTGG 59.705 50.000 2.45 0.00 32.11 4.85
2384 3128 1.341209 GAGAAACAAGTTTGGGCTGGG 59.659 52.381 2.45 0.00 32.11 4.45
2387 3131 1.402107 AACAAGTTTGGGCTGGGCTG 61.402 55.000 0.00 0.00 0.00 4.85
2389 3133 3.754586 AAGTTTGGGCTGGGCTGCA 62.755 57.895 0.50 0.00 34.04 4.41
2390 3134 3.688159 GTTTGGGCTGGGCTGCAG 61.688 66.667 10.11 10.11 34.04 4.41
2396 3140 4.712425 GCTGGGCTGCAGCGTTTG 62.712 66.667 31.19 20.94 43.26 2.93
2416 3160 2.368655 CACAATTGCACTTAAGGCCC 57.631 50.000 5.05 0.00 0.00 5.80
2420 3164 3.244181 ACAATTGCACTTAAGGCCCAAAG 60.244 43.478 5.05 12.10 0.00 2.77
2422 3166 1.616159 TGCACTTAAGGCCCAAAGAC 58.384 50.000 18.95 11.73 0.00 3.01
2424 3168 1.960689 GCACTTAAGGCCCAAAGACAA 59.039 47.619 18.95 0.00 0.00 3.18
2427 3171 3.253432 CACTTAAGGCCCAAAGACAAGAC 59.747 47.826 18.95 0.00 0.00 3.01
2428 3172 2.178912 TAAGGCCCAAAGACAAGACG 57.821 50.000 0.00 0.00 0.00 4.18
2429 3173 1.172812 AAGGCCCAAAGACAAGACGC 61.173 55.000 0.00 0.00 0.00 5.19
2432 3176 1.860078 CCCAAAGACAAGACGCGAC 59.140 57.895 15.93 6.86 0.00 5.19
2433 3177 0.878523 CCCAAAGACAAGACGCGACA 60.879 55.000 15.93 0.00 0.00 4.35
2434 3178 0.508641 CCAAAGACAAGACGCGACAG 59.491 55.000 15.93 6.28 0.00 3.51
2435 3179 0.508641 CAAAGACAAGACGCGACAGG 59.491 55.000 15.93 5.42 0.00 4.00
2438 3182 1.173444 AGACAAGACGCGACAGGAGT 61.173 55.000 15.93 3.83 0.00 3.85
2439 3183 0.729816 GACAAGACGCGACAGGAGTC 60.730 60.000 15.93 9.87 44.78 3.36
2440 3184 1.444553 CAAGACGCGACAGGAGTCC 60.445 63.158 15.93 0.00 45.47 3.85
2441 3185 1.901948 AAGACGCGACAGGAGTCCA 60.902 57.895 15.93 0.00 45.47 4.02
2442 3186 1.251527 AAGACGCGACAGGAGTCCAT 61.252 55.000 15.93 0.00 45.47 3.41
2443 3187 1.517257 GACGCGACAGGAGTCCATG 60.517 63.158 15.93 9.35 41.87 3.66
2444 3188 2.214181 GACGCGACAGGAGTCCATGT 62.214 60.000 15.93 12.59 41.87 3.21
2445 3189 1.079819 CGCGACAGGAGTCCATGTT 60.080 57.895 12.86 0.00 41.87 2.71
2446 3190 0.172578 CGCGACAGGAGTCCATGTTA 59.827 55.000 12.86 0.00 41.87 2.41
2447 3191 1.202417 CGCGACAGGAGTCCATGTTAT 60.202 52.381 12.86 0.00 41.87 1.89
2448 3192 2.738643 CGCGACAGGAGTCCATGTTATT 60.739 50.000 12.86 0.00 41.87 1.40
2449 3193 3.490249 CGCGACAGGAGTCCATGTTATTA 60.490 47.826 12.86 0.00 41.87 0.98
2450 3194 4.051922 GCGACAGGAGTCCATGTTATTAG 58.948 47.826 12.86 5.29 41.87 1.73
2451 3195 4.441634 GCGACAGGAGTCCATGTTATTAGT 60.442 45.833 12.86 0.00 41.87 2.24
2452 3196 5.661458 CGACAGGAGTCCATGTTATTAGTT 58.339 41.667 12.86 0.00 41.87 2.24
2453 3197 5.520288 CGACAGGAGTCCATGTTATTAGTTG 59.480 44.000 12.86 0.00 41.87 3.16
2454 3198 6.374417 ACAGGAGTCCATGTTATTAGTTGT 57.626 37.500 12.86 0.00 0.00 3.32
2455 3199 6.779860 ACAGGAGTCCATGTTATTAGTTGTT 58.220 36.000 12.86 0.00 0.00 2.83
2456 3200 7.231467 ACAGGAGTCCATGTTATTAGTTGTTT 58.769 34.615 12.86 0.00 0.00 2.83
2457 3201 7.390718 ACAGGAGTCCATGTTATTAGTTGTTTC 59.609 37.037 12.86 0.00 0.00 2.78
2458 3202 7.607991 CAGGAGTCCATGTTATTAGTTGTTTCT 59.392 37.037 12.86 0.00 0.00 2.52
2459 3203 8.822805 AGGAGTCCATGTTATTAGTTGTTTCTA 58.177 33.333 12.86 0.00 0.00 2.10
2460 3204 9.444600 GGAGTCCATGTTATTAGTTGTTTCTAA 57.555 33.333 3.60 0.00 34.94 2.10
2495 3239 8.776376 ATGCCTTTTTATGATTTTGGTAGTTG 57.224 30.769 0.00 0.00 0.00 3.16
2496 3240 7.957002 TGCCTTTTTATGATTTTGGTAGTTGA 58.043 30.769 0.00 0.00 0.00 3.18
2497 3241 8.424918 TGCCTTTTTATGATTTTGGTAGTTGAA 58.575 29.630 0.00 0.00 0.00 2.69
2498 3242 9.435688 GCCTTTTTATGATTTTGGTAGTTGAAT 57.564 29.630 0.00 0.00 0.00 2.57
2501 3245 8.770438 TTTTATGATTTTGGTAGTTGAATGCC 57.230 30.769 0.00 0.00 0.00 4.40
2502 3246 5.999205 ATGATTTTGGTAGTTGAATGCCA 57.001 34.783 0.00 0.00 32.59 4.92
2503 3247 5.999205 TGATTTTGGTAGTTGAATGCCAT 57.001 34.783 0.00 0.00 34.69 4.40
2504 3248 5.722263 TGATTTTGGTAGTTGAATGCCATG 58.278 37.500 0.00 0.00 34.69 3.66
2505 3249 5.479724 TGATTTTGGTAGTTGAATGCCATGA 59.520 36.000 0.00 0.00 34.69 3.07
2506 3250 5.389859 TTTTGGTAGTTGAATGCCATGAG 57.610 39.130 0.00 0.00 34.69 2.90
2507 3251 3.719268 TGGTAGTTGAATGCCATGAGT 57.281 42.857 0.00 0.00 29.03 3.41
2508 3252 4.032960 TGGTAGTTGAATGCCATGAGTT 57.967 40.909 0.00 0.00 29.03 3.01
2509 3253 4.406456 TGGTAGTTGAATGCCATGAGTTT 58.594 39.130 0.00 0.00 29.03 2.66
2510 3254 4.832266 TGGTAGTTGAATGCCATGAGTTTT 59.168 37.500 0.00 0.00 29.03 2.43
2511 3255 5.163513 GGTAGTTGAATGCCATGAGTTTTG 58.836 41.667 0.00 0.00 0.00 2.44
2512 3256 5.048083 GGTAGTTGAATGCCATGAGTTTTGA 60.048 40.000 0.00 0.00 0.00 2.69
2513 3257 5.733620 AGTTGAATGCCATGAGTTTTGAT 57.266 34.783 0.00 0.00 0.00 2.57
2514 3258 6.105397 AGTTGAATGCCATGAGTTTTGATT 57.895 33.333 0.00 0.00 0.00 2.57
2515 3259 6.161381 AGTTGAATGCCATGAGTTTTGATTC 58.839 36.000 0.00 0.00 0.00 2.52
2516 3260 5.725325 TGAATGCCATGAGTTTTGATTCA 57.275 34.783 0.00 0.00 0.00 2.57
2517 3261 5.716094 TGAATGCCATGAGTTTTGATTCAG 58.284 37.500 0.00 0.00 0.00 3.02
2518 3262 5.244402 TGAATGCCATGAGTTTTGATTCAGT 59.756 36.000 0.00 0.00 0.00 3.41
2519 3263 6.433716 TGAATGCCATGAGTTTTGATTCAGTA 59.566 34.615 0.00 0.00 0.00 2.74
2520 3264 5.627499 TGCCATGAGTTTTGATTCAGTAC 57.373 39.130 0.00 0.00 0.00 2.73
2521 3265 5.069318 TGCCATGAGTTTTGATTCAGTACA 58.931 37.500 0.00 0.00 0.00 2.90
2522 3266 5.048782 TGCCATGAGTTTTGATTCAGTACAC 60.049 40.000 0.00 0.00 0.00 2.90
2523 3267 5.621422 CCATGAGTTTTGATTCAGTACACG 58.379 41.667 0.00 0.00 0.00 4.49
2524 3268 5.179368 CCATGAGTTTTGATTCAGTACACGT 59.821 40.000 0.00 0.00 0.00 4.49
2525 3269 5.651172 TGAGTTTTGATTCAGTACACGTG 57.349 39.130 15.48 15.48 0.00 4.49
2526 3270 4.025229 TGAGTTTTGATTCAGTACACGTGC 60.025 41.667 17.22 0.00 0.00 5.34
2527 3271 3.874543 AGTTTTGATTCAGTACACGTGCA 59.125 39.130 17.22 0.00 0.00 4.57
2528 3272 4.515191 AGTTTTGATTCAGTACACGTGCAT 59.485 37.500 17.22 0.00 0.00 3.96
2529 3273 5.008613 AGTTTTGATTCAGTACACGTGCATT 59.991 36.000 17.22 0.00 0.00 3.56
2530 3274 5.431420 TTTGATTCAGTACACGTGCATTT 57.569 34.783 17.22 0.00 0.00 2.32
2531 3275 4.403015 TGATTCAGTACACGTGCATTTG 57.597 40.909 17.22 9.41 0.00 2.32
2532 3276 2.679355 TTCAGTACACGTGCATTTGC 57.321 45.000 17.22 0.00 42.50 3.68
2564 3308 3.363341 TTTTGACCTGAAATGTTCGCC 57.637 42.857 0.00 0.00 0.00 5.54
2565 3309 1.243902 TTGACCTGAAATGTTCGCCC 58.756 50.000 0.00 0.00 0.00 6.13
2566 3310 0.608035 TGACCTGAAATGTTCGCCCC 60.608 55.000 0.00 0.00 0.00 5.80
2567 3311 0.322546 GACCTGAAATGTTCGCCCCT 60.323 55.000 0.00 0.00 0.00 4.79
2568 3312 0.609131 ACCTGAAATGTTCGCCCCTG 60.609 55.000 0.00 0.00 0.00 4.45
2569 3313 1.508088 CTGAAATGTTCGCCCCTGC 59.492 57.895 0.00 0.00 0.00 4.85
2570 3314 0.962356 CTGAAATGTTCGCCCCTGCT 60.962 55.000 0.00 0.00 34.43 4.24
2571 3315 0.326595 TGAAATGTTCGCCCCTGCTA 59.673 50.000 0.00 0.00 34.43 3.49
2572 3316 1.017387 GAAATGTTCGCCCCTGCTAG 58.983 55.000 0.00 0.00 34.43 3.42
2573 3317 1.032114 AAATGTTCGCCCCTGCTAGC 61.032 55.000 8.10 8.10 34.43 3.42
2574 3318 1.915078 AATGTTCGCCCCTGCTAGCT 61.915 55.000 17.23 0.00 34.43 3.32
2575 3319 1.915078 ATGTTCGCCCCTGCTAGCTT 61.915 55.000 17.23 0.00 34.43 3.74
2576 3320 1.377333 GTTCGCCCCTGCTAGCTTT 60.377 57.895 17.23 0.00 34.43 3.51
2577 3321 0.107848 GTTCGCCCCTGCTAGCTTTA 60.108 55.000 17.23 0.00 34.43 1.85
2578 3322 0.616371 TTCGCCCCTGCTAGCTTTAA 59.384 50.000 17.23 0.00 34.43 1.52
2579 3323 0.837272 TCGCCCCTGCTAGCTTTAAT 59.163 50.000 17.23 0.00 34.43 1.40
2580 3324 1.211949 TCGCCCCTGCTAGCTTTAATT 59.788 47.619 17.23 0.00 34.43 1.40
2581 3325 1.604278 CGCCCCTGCTAGCTTTAATTC 59.396 52.381 17.23 0.00 34.43 2.17
2582 3326 1.957177 GCCCCTGCTAGCTTTAATTCC 59.043 52.381 17.23 0.00 33.53 3.01
2583 3327 2.423517 GCCCCTGCTAGCTTTAATTCCT 60.424 50.000 17.23 0.00 33.53 3.36
2584 3328 3.217626 CCCCTGCTAGCTTTAATTCCTG 58.782 50.000 17.23 0.00 0.00 3.86
2585 3329 3.217626 CCCTGCTAGCTTTAATTCCTGG 58.782 50.000 17.23 0.00 0.00 4.45
2586 3330 3.217626 CCTGCTAGCTTTAATTCCTGGG 58.782 50.000 17.23 0.00 0.00 4.45
2587 3331 3.372025 CCTGCTAGCTTTAATTCCTGGGT 60.372 47.826 17.23 0.00 0.00 4.51
2588 3332 3.879892 CTGCTAGCTTTAATTCCTGGGTC 59.120 47.826 17.23 0.00 0.00 4.46
2589 3333 3.215151 GCTAGCTTTAATTCCTGGGTCC 58.785 50.000 7.70 0.00 0.00 4.46
2590 3334 2.420058 AGCTTTAATTCCTGGGTCCG 57.580 50.000 0.00 0.00 0.00 4.79
2591 3335 0.738975 GCTTTAATTCCTGGGTCCGC 59.261 55.000 0.00 0.00 0.00 5.54
2592 3336 1.389555 CTTTAATTCCTGGGTCCGCC 58.610 55.000 0.00 0.00 0.00 6.13
2593 3337 0.699399 TTTAATTCCTGGGTCCGCCA 59.301 50.000 0.00 0.00 36.17 5.69
2594 3338 0.034863 TTAATTCCTGGGTCCGCCAC 60.035 55.000 0.00 0.00 36.17 5.01
2595 3339 0.912487 TAATTCCTGGGTCCGCCACT 60.912 55.000 0.00 0.00 36.17 4.00
2596 3340 2.484287 AATTCCTGGGTCCGCCACTG 62.484 60.000 0.00 0.00 36.17 3.66
2604 3348 0.036765 GGTCCGCCACTGTGTGAATA 60.037 55.000 7.08 0.00 35.23 1.75
2609 3353 1.464608 CGCCACTGTGTGAATAGTTGG 59.535 52.381 7.08 0.00 35.23 3.77
2795 3552 7.258441 TGTAGAACATTATTCCACTCTTCTCG 58.742 38.462 0.00 0.00 0.00 4.04
2885 3642 7.581011 AAATTGATTGTTTAGCGATTTCACC 57.419 32.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
376 972 2.945456 ACTACGGAGATGTATGAGGCA 58.055 47.619 0.00 0.00 0.00 4.75
717 1334 4.400961 GCGGGCTTCACTCCAGCT 62.401 66.667 0.00 0.00 40.80 4.24
822 1440 0.249868 TGTGAGCGTCTGACCCTTTG 60.250 55.000 1.55 0.00 0.00 2.77
904 1523 1.062587 CGATGTCAAGTTTCCGATGGC 59.937 52.381 0.00 0.00 0.00 4.40
929 1548 0.678366 AGCTCGTGTCGTCTGATCCT 60.678 55.000 0.00 0.00 0.00 3.24
930 1549 1.003331 CTAGCTCGTGTCGTCTGATCC 60.003 57.143 0.00 0.00 0.00 3.36
931 1550 1.666700 ACTAGCTCGTGTCGTCTGATC 59.333 52.381 0.00 0.00 0.00 2.92
932 1551 1.740297 ACTAGCTCGTGTCGTCTGAT 58.260 50.000 0.00 0.00 0.00 2.90
933 1552 2.269172 CTACTAGCTCGTGTCGTCTGA 58.731 52.381 0.22 0.00 0.00 3.27
934 1553 1.267632 GCTACTAGCTCGTGTCGTCTG 60.268 57.143 0.22 0.00 38.45 3.51
935 1554 1.008329 GCTACTAGCTCGTGTCGTCT 58.992 55.000 0.22 0.00 38.45 4.18
936 1555 0.027848 GGCTACTAGCTCGTGTCGTC 59.972 60.000 7.99 0.00 41.99 4.20
937 1556 0.675837 TGGCTACTAGCTCGTGTCGT 60.676 55.000 7.99 0.00 41.99 4.34
938 1557 0.248134 GTGGCTACTAGCTCGTGTCG 60.248 60.000 7.99 0.00 41.99 4.35
939 1558 0.809385 TGTGGCTACTAGCTCGTGTC 59.191 55.000 7.99 0.00 41.99 3.67
940 1559 1.254026 TTGTGGCTACTAGCTCGTGT 58.746 50.000 7.99 0.00 41.99 4.49
941 1560 2.263077 CTTTGTGGCTACTAGCTCGTG 58.737 52.381 7.99 0.00 41.99 4.35
942 1561 1.404315 GCTTTGTGGCTACTAGCTCGT 60.404 52.381 16.57 0.00 41.99 4.18
943 1562 1.281899 GCTTTGTGGCTACTAGCTCG 58.718 55.000 16.57 0.00 41.99 5.03
944 1563 1.066143 TGGCTTTGTGGCTACTAGCTC 60.066 52.381 20.75 14.16 41.99 4.09
945 1564 0.984230 TGGCTTTGTGGCTACTAGCT 59.016 50.000 20.75 0.00 41.99 3.32
946 1565 1.468914 GTTGGCTTTGTGGCTACTAGC 59.531 52.381 15.88 15.88 41.95 3.42
947 1566 1.732259 CGTTGGCTTTGTGGCTACTAG 59.268 52.381 0.64 0.16 42.72 2.57
948 1567 1.345089 TCGTTGGCTTTGTGGCTACTA 59.655 47.619 0.64 0.00 42.72 1.82
949 1568 0.107831 TCGTTGGCTTTGTGGCTACT 59.892 50.000 0.64 0.00 42.72 2.57
950 1569 1.130561 GATCGTTGGCTTTGTGGCTAC 59.869 52.381 0.00 0.00 41.83 3.58
959 1578 1.153823 CGGTCGAGATCGTTGGCTT 60.154 57.895 1.70 0.00 40.80 4.35
963 1582 3.984241 GAGCGGTCGAGATCGTTG 58.016 61.111 7.61 0.00 40.80 4.10
975 1594 3.664025 TTGCTGATGACCCGAGCGG 62.664 63.158 1.06 1.06 35.36 5.52
976 1595 2.125552 TTGCTGATGACCCGAGCG 60.126 61.111 0.00 0.00 35.36 5.03
977 1596 2.456119 CGTTGCTGATGACCCGAGC 61.456 63.158 0.00 0.00 0.00 5.03
1092 1711 3.117171 CTGCAGCACTGACTCGCC 61.117 66.667 0.00 0.00 0.00 5.54
1129 1748 2.815647 GCAGTACTCGCTGGTGGC 60.816 66.667 9.26 0.00 37.00 5.01
1135 1754 4.778415 CGTGCCGCAGTACTCGCT 62.778 66.667 13.14 0.00 0.00 4.93
1446 2081 1.267121 TTGTCAGGGCTCAGGACTAC 58.733 55.000 9.47 0.00 32.84 2.73
1449 2084 0.615331 TCATTGTCAGGGCTCAGGAC 59.385 55.000 1.70 1.70 0.00 3.85
1450 2085 1.211212 CATCATTGTCAGGGCTCAGGA 59.789 52.381 0.00 0.00 0.00 3.86
1464 2109 6.694877 TCGTAGTAGTACAAGCTCATCATT 57.305 37.500 8.43 0.00 0.00 2.57
1920 2569 0.669077 GTCCACGCGATGTCCTAGAT 59.331 55.000 15.93 0.00 0.00 1.98
1922 2571 0.456221 AAGTCCACGCGATGTCCTAG 59.544 55.000 15.93 0.00 0.00 3.02
2029 2684 6.636562 ATTCATCGAGACGAAGGTAGTATT 57.363 37.500 0.00 0.00 39.99 1.89
2033 2688 6.062434 ACTTATTCATCGAGACGAAGGTAG 57.938 41.667 0.00 0.00 39.99 3.18
2034 2689 5.587443 TGACTTATTCATCGAGACGAAGGTA 59.413 40.000 0.00 0.00 39.99 3.08
2035 2690 4.398358 TGACTTATTCATCGAGACGAAGGT 59.602 41.667 0.00 0.00 39.99 3.50
2036 2691 4.921547 TGACTTATTCATCGAGACGAAGG 58.078 43.478 0.00 0.00 39.99 3.46
2037 2692 6.129587 CGAATGACTTATTCATCGAGACGAAG 60.130 42.308 0.00 0.00 44.86 3.79
2038 2693 5.681543 CGAATGACTTATTCATCGAGACGAA 59.318 40.000 0.00 0.00 44.86 3.85
2039 2694 5.205565 CGAATGACTTATTCATCGAGACGA 58.794 41.667 0.00 0.00 44.86 4.20
2040 2695 4.143721 GCGAATGACTTATTCATCGAGACG 60.144 45.833 0.00 0.00 44.86 4.18
2041 2696 4.740205 TGCGAATGACTTATTCATCGAGAC 59.260 41.667 0.00 0.00 44.86 3.36
2042 2697 4.932146 TGCGAATGACTTATTCATCGAGA 58.068 39.130 0.00 0.00 44.86 4.04
2043 2698 5.835911 ATGCGAATGACTTATTCATCGAG 57.164 39.130 0.00 0.00 44.86 4.04
2044 2699 6.447162 ACTATGCGAATGACTTATTCATCGA 58.553 36.000 0.00 0.00 44.86 3.59
2045 2700 6.696825 ACTATGCGAATGACTTATTCATCG 57.303 37.500 0.00 0.00 44.86 3.84
2046 2701 8.304202 AGAACTATGCGAATGACTTATTCATC 57.696 34.615 0.00 0.00 44.86 2.92
2048 2703 8.630037 TCTAGAACTATGCGAATGACTTATTCA 58.370 33.333 0.00 0.00 44.42 2.57
2049 2704 9.632807 ATCTAGAACTATGCGAATGACTTATTC 57.367 33.333 0.00 0.00 41.46 1.75
2050 2705 9.632807 GATCTAGAACTATGCGAATGACTTATT 57.367 33.333 0.00 0.00 0.00 1.40
2051 2706 7.965655 CGATCTAGAACTATGCGAATGACTTAT 59.034 37.037 0.00 0.00 0.00 1.73
2052 2707 7.172703 TCGATCTAGAACTATGCGAATGACTTA 59.827 37.037 0.00 0.00 0.00 2.24
2053 2708 6.017026 TCGATCTAGAACTATGCGAATGACTT 60.017 38.462 0.00 0.00 0.00 3.01
2054 2709 5.470437 TCGATCTAGAACTATGCGAATGACT 59.530 40.000 0.00 0.00 0.00 3.41
2055 2710 5.566016 GTCGATCTAGAACTATGCGAATGAC 59.434 44.000 0.00 0.00 0.00 3.06
2056 2711 5.614887 CGTCGATCTAGAACTATGCGAATGA 60.615 44.000 0.00 0.00 0.00 2.57
2057 2712 4.551509 CGTCGATCTAGAACTATGCGAATG 59.448 45.833 0.00 0.00 0.00 2.67
2058 2713 4.451435 TCGTCGATCTAGAACTATGCGAAT 59.549 41.667 0.00 0.00 0.00 3.34
2059 2714 3.805971 TCGTCGATCTAGAACTATGCGAA 59.194 43.478 0.00 0.00 0.00 4.70
2060 2715 3.387397 TCGTCGATCTAGAACTATGCGA 58.613 45.455 0.00 0.09 0.00 5.10
2061 2716 3.790212 TCGTCGATCTAGAACTATGCG 57.210 47.619 0.00 0.00 0.00 4.73
2062 2717 7.804129 AGTTAAATCGTCGATCTAGAACTATGC 59.196 37.037 8.45 0.00 0.00 3.14
2066 2721 9.275398 AGATAGTTAAATCGTCGATCTAGAACT 57.725 33.333 8.45 15.77 0.00 3.01
2127 2782 9.715121 AGATTTCTACACGGATGTAAGTTTTTA 57.285 29.630 0.00 0.00 40.84 1.52
2128 2783 8.617290 AGATTTCTACACGGATGTAAGTTTTT 57.383 30.769 0.00 0.00 40.84 1.94
2129 2784 9.367444 CTAGATTTCTACACGGATGTAAGTTTT 57.633 33.333 0.00 0.00 40.84 2.43
2130 2785 8.529476 ACTAGATTTCTACACGGATGTAAGTTT 58.471 33.333 0.00 0.00 40.84 2.66
2131 2786 7.974501 CACTAGATTTCTACACGGATGTAAGTT 59.025 37.037 0.00 0.00 40.84 2.66
2132 2787 7.338703 TCACTAGATTTCTACACGGATGTAAGT 59.661 37.037 0.00 0.00 40.84 2.24
2133 2788 7.704271 TCACTAGATTTCTACACGGATGTAAG 58.296 38.462 0.00 0.00 40.84 2.34
2134 2789 7.634671 TCACTAGATTTCTACACGGATGTAA 57.365 36.000 0.00 0.00 40.84 2.41
2135 2790 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
2136 2791 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
2137 2792 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
2138 2793 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
2139 2794 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
2178 2833 9.784531 ATCGATTTGAGGAACTAAATATGTGAT 57.215 29.630 0.00 0.00 41.55 3.06
2179 2834 9.045223 CATCGATTTGAGGAACTAAATATGTGA 57.955 33.333 0.00 0.00 41.55 3.58
2180 2835 9.045223 TCATCGATTTGAGGAACTAAATATGTG 57.955 33.333 0.00 0.00 41.55 3.21
2181 2836 9.046296 GTCATCGATTTGAGGAACTAAATATGT 57.954 33.333 0.00 0.00 41.55 2.29
2182 2837 8.499162 GGTCATCGATTTGAGGAACTAAATATG 58.501 37.037 0.00 0.00 41.83 1.78
2183 2838 8.608844 GGTCATCGATTTGAGGAACTAAATAT 57.391 34.615 0.00 0.00 41.83 1.28
2185 2840 6.927294 GGTCATCGATTTGAGGAACTAAAT 57.073 37.500 0.00 0.00 41.83 1.40
2190 2845 5.263968 TCTAGGTCATCGATTTGAGGAAC 57.736 43.478 0.00 0.00 45.40 3.62
2191 2846 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
2192 2847 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
2193 2848 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
2194 2849 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
2195 2850 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
2196 2851 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
2197 2852 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
2198 2853 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
2199 2854 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
2200 2855 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
2201 2856 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
2202 2857 2.613133 ACTCGCGTAGTTCTAGGTCATC 59.387 50.000 5.77 0.00 33.35 2.92
2203 2858 2.355132 CACTCGCGTAGTTCTAGGTCAT 59.645 50.000 5.77 0.00 35.76 3.06
2204 2859 1.736126 CACTCGCGTAGTTCTAGGTCA 59.264 52.381 5.77 0.00 35.76 4.02
2205 2860 2.005451 TCACTCGCGTAGTTCTAGGTC 58.995 52.381 5.77 0.00 35.76 3.85
2206 2861 2.105006 TCACTCGCGTAGTTCTAGGT 57.895 50.000 5.77 0.00 35.76 3.08
2207 2862 3.694535 AATCACTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 35.76 3.02
2208 2863 6.910972 TGAATAAATCACTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 35.76 2.43
2209 2864 6.788243 TGAATAAATCACTCGCGTAGTTCTA 58.212 36.000 5.77 0.00 35.76 2.10
2210 2865 5.647589 TGAATAAATCACTCGCGTAGTTCT 58.352 37.500 5.77 0.00 35.76 3.01
2211 2866 5.944049 TGAATAAATCACTCGCGTAGTTC 57.056 39.130 5.77 2.18 35.76 3.01
2223 2878 5.531122 CCTCCGTCTAGGTGAATAAATCA 57.469 43.478 0.00 0.00 41.99 2.57
2234 2889 2.216898 CCGTTACTACCTCCGTCTAGG 58.783 57.143 0.00 0.00 42.82 3.02
2235 2890 2.911484 ACCGTTACTACCTCCGTCTAG 58.089 52.381 0.00 0.00 0.00 2.43
2236 2891 3.350219 AACCGTTACTACCTCCGTCTA 57.650 47.619 0.00 0.00 0.00 2.59
2237 2892 2.206576 AACCGTTACTACCTCCGTCT 57.793 50.000 0.00 0.00 0.00 4.18
2238 2893 2.989166 CAAAACCGTTACTACCTCCGTC 59.011 50.000 0.00 0.00 0.00 4.79
2239 2894 2.867647 GCAAAACCGTTACTACCTCCGT 60.868 50.000 0.00 0.00 0.00 4.69
2240 2895 1.728425 GCAAAACCGTTACTACCTCCG 59.272 52.381 0.00 0.00 0.00 4.63
2241 2896 2.740447 CAGCAAAACCGTTACTACCTCC 59.260 50.000 0.00 0.00 0.00 4.30
2242 2897 3.656559 TCAGCAAAACCGTTACTACCTC 58.343 45.455 0.00 0.00 0.00 3.85
2243 2898 3.756933 TCAGCAAAACCGTTACTACCT 57.243 42.857 0.00 0.00 0.00 3.08
2244 2899 4.530388 GTTTCAGCAAAACCGTTACTACC 58.470 43.478 3.94 0.00 41.23 3.18
2294 2978 5.006649 GCACAATGACTACAATCTAATGCGA 59.993 40.000 0.00 0.00 0.00 5.10
2300 2984 7.039270 ACATAACGCACAATGACTACAATCTA 58.961 34.615 0.00 0.00 0.00 1.98
2320 3004 0.319555 GCCGCATCGCTAGGACATAA 60.320 55.000 0.00 0.00 0.00 1.90
2328 3012 2.588596 CCATGTGCCGCATCGCTA 60.589 61.111 0.00 0.00 35.19 4.26
2340 3024 4.995058 ACCCGGTCACCCCCATGT 62.995 66.667 0.00 0.00 0.00 3.21
2342 3026 4.667935 TCACCCGGTCACCCCCAT 62.668 66.667 0.00 0.00 0.00 4.00
2347 3031 3.391382 CTCCCTCACCCGGTCACC 61.391 72.222 0.00 0.00 0.00 4.02
2348 3032 2.283676 TCTCCCTCACCCGGTCAC 60.284 66.667 0.00 0.00 0.00 3.67
2349 3033 2.037367 CTCTCCCTCACCCGGTCA 59.963 66.667 0.00 0.00 0.00 4.02
2350 3034 0.903454 TTTCTCTCCCTCACCCGGTC 60.903 60.000 0.00 0.00 0.00 4.79
2353 3037 0.685097 TTGTTTCTCTCCCTCACCCG 59.315 55.000 0.00 0.00 0.00 5.28
2354 3038 1.700186 ACTTGTTTCTCTCCCTCACCC 59.300 52.381 0.00 0.00 0.00 4.61
2357 3041 3.435026 CCCAAACTTGTTTCTCTCCCTCA 60.435 47.826 0.00 0.00 0.00 3.86
2359 3043 2.753168 GCCCAAACTTGTTTCTCTCCCT 60.753 50.000 0.00 0.00 0.00 4.20
2360 3044 1.613925 GCCCAAACTTGTTTCTCTCCC 59.386 52.381 0.00 0.00 0.00 4.30
2362 3046 2.294512 CCAGCCCAAACTTGTTTCTCTC 59.705 50.000 0.00 0.00 0.00 3.20
2363 3047 2.310538 CCAGCCCAAACTTGTTTCTCT 58.689 47.619 0.00 0.00 0.00 3.10
2364 3048 1.341209 CCCAGCCCAAACTTGTTTCTC 59.659 52.381 0.00 0.00 0.00 2.87
2366 3050 0.249868 GCCCAGCCCAAACTTGTTTC 60.250 55.000 0.00 0.00 0.00 2.78
2367 3051 0.690744 AGCCCAGCCCAAACTTGTTT 60.691 50.000 0.00 0.00 0.00 2.83
2368 3052 1.075301 AGCCCAGCCCAAACTTGTT 60.075 52.632 0.00 0.00 0.00 2.83
2369 3053 1.833934 CAGCCCAGCCCAAACTTGT 60.834 57.895 0.00 0.00 0.00 3.16
2372 3056 4.223125 TGCAGCCCAGCCCAAACT 62.223 61.111 0.00 0.00 0.00 2.66
2397 3141 1.617850 TGGGCCTTAAGTGCAATTGTG 59.382 47.619 10.14 1.87 0.00 3.33
2400 3144 3.006859 GTCTTTGGGCCTTAAGTGCAATT 59.993 43.478 4.23 4.23 0.00 2.32
2402 3146 1.960689 GTCTTTGGGCCTTAAGTGCAA 59.039 47.619 4.53 0.00 0.00 4.08
2404 3148 1.616159 TGTCTTTGGGCCTTAAGTGC 58.384 50.000 4.53 4.66 0.00 4.40
2407 3151 2.484264 CGTCTTGTCTTTGGGCCTTAAG 59.516 50.000 4.53 8.85 0.00 1.85
2408 3152 2.500229 CGTCTTGTCTTTGGGCCTTAA 58.500 47.619 4.53 0.00 0.00 1.85
2409 3153 1.880646 GCGTCTTGTCTTTGGGCCTTA 60.881 52.381 4.53 0.00 0.00 2.69
2413 3157 1.959226 TCGCGTCTTGTCTTTGGGC 60.959 57.895 5.77 0.00 0.00 5.36
2414 3158 0.878523 TGTCGCGTCTTGTCTTTGGG 60.879 55.000 5.77 0.00 0.00 4.12
2415 3159 0.508641 CTGTCGCGTCTTGTCTTTGG 59.491 55.000 5.77 0.00 0.00 3.28
2416 3160 0.508641 CCTGTCGCGTCTTGTCTTTG 59.491 55.000 5.77 0.00 0.00 2.77
2420 3164 0.729816 GACTCCTGTCGCGTCTTGTC 60.730 60.000 5.77 5.07 33.15 3.18
2422 3166 1.444553 GGACTCCTGTCGCGTCTTG 60.445 63.158 5.77 0.00 43.79 3.02
2424 3168 1.679305 ATGGACTCCTGTCGCGTCT 60.679 57.895 5.77 0.00 43.79 4.18
2427 3171 0.172578 TAACATGGACTCCTGTCGCG 59.827 55.000 0.00 0.00 43.79 5.87
2428 3172 2.604046 ATAACATGGACTCCTGTCGC 57.396 50.000 0.00 0.00 43.79 5.19
2429 3173 5.263968 ACTAATAACATGGACTCCTGTCG 57.736 43.478 0.00 0.00 43.79 4.35
2432 3176 7.607991 AGAAACAACTAATAACATGGACTCCTG 59.392 37.037 0.00 0.00 0.00 3.86
2433 3177 7.690256 AGAAACAACTAATAACATGGACTCCT 58.310 34.615 0.00 0.00 0.00 3.69
2434 3178 7.923414 AGAAACAACTAATAACATGGACTCC 57.077 36.000 0.00 0.00 0.00 3.85
2469 3213 9.868277 CAACTACCAAAATCATAAAAAGGCATA 57.132 29.630 0.00 0.00 0.00 3.14
2470 3214 8.592809 TCAACTACCAAAATCATAAAAAGGCAT 58.407 29.630 0.00 0.00 0.00 4.40
2471 3215 7.957002 TCAACTACCAAAATCATAAAAAGGCA 58.043 30.769 0.00 0.00 0.00 4.75
2472 3216 8.825667 TTCAACTACCAAAATCATAAAAAGGC 57.174 30.769 0.00 0.00 0.00 4.35
2475 3219 9.213799 GGCATTCAACTACCAAAATCATAAAAA 57.786 29.630 0.00 0.00 0.00 1.94
2476 3220 8.370940 TGGCATTCAACTACCAAAATCATAAAA 58.629 29.630 0.00 0.00 0.00 1.52
2477 3221 7.901029 TGGCATTCAACTACCAAAATCATAAA 58.099 30.769 0.00 0.00 0.00 1.40
2478 3222 7.473735 TGGCATTCAACTACCAAAATCATAA 57.526 32.000 0.00 0.00 0.00 1.90
2479 3223 7.341512 TCATGGCATTCAACTACCAAAATCATA 59.658 33.333 0.00 0.00 35.41 2.15
2480 3224 5.999205 TGGCATTCAACTACCAAAATCAT 57.001 34.783 0.00 0.00 0.00 2.45
2481 3225 5.479724 TCATGGCATTCAACTACCAAAATCA 59.520 36.000 0.00 0.00 35.41 2.57
2482 3226 5.964758 TCATGGCATTCAACTACCAAAATC 58.035 37.500 0.00 0.00 35.41 2.17
2483 3227 5.481473 ACTCATGGCATTCAACTACCAAAAT 59.519 36.000 0.00 0.00 35.41 1.82
2484 3228 4.832266 ACTCATGGCATTCAACTACCAAAA 59.168 37.500 0.00 0.00 35.41 2.44
2485 3229 4.406456 ACTCATGGCATTCAACTACCAAA 58.594 39.130 0.00 0.00 35.41 3.28
2486 3230 4.032960 ACTCATGGCATTCAACTACCAA 57.967 40.909 0.00 0.00 35.41 3.67
2487 3231 3.719268 ACTCATGGCATTCAACTACCA 57.281 42.857 0.00 0.00 36.43 3.25
2488 3232 5.048083 TCAAAACTCATGGCATTCAACTACC 60.048 40.000 0.00 0.00 0.00 3.18
2489 3233 6.012658 TCAAAACTCATGGCATTCAACTAC 57.987 37.500 0.00 0.00 0.00 2.73
2490 3234 6.839124 ATCAAAACTCATGGCATTCAACTA 57.161 33.333 0.00 0.00 0.00 2.24
2491 3235 5.733620 ATCAAAACTCATGGCATTCAACT 57.266 34.783 0.00 0.00 0.00 3.16
2492 3236 5.927689 TGAATCAAAACTCATGGCATTCAAC 59.072 36.000 0.00 0.00 0.00 3.18
2493 3237 6.099159 TGAATCAAAACTCATGGCATTCAA 57.901 33.333 0.00 0.00 0.00 2.69
2494 3238 5.244402 ACTGAATCAAAACTCATGGCATTCA 59.756 36.000 0.00 0.00 0.00 2.57
2495 3239 5.717119 ACTGAATCAAAACTCATGGCATTC 58.283 37.500 0.00 0.00 0.00 2.67
2496 3240 5.733620 ACTGAATCAAAACTCATGGCATT 57.266 34.783 0.00 0.00 0.00 3.56
2497 3241 5.711506 TGTACTGAATCAAAACTCATGGCAT 59.288 36.000 0.00 0.00 0.00 4.40
2498 3242 5.048782 GTGTACTGAATCAAAACTCATGGCA 60.049 40.000 0.00 0.00 0.00 4.92
2499 3243 5.393962 GTGTACTGAATCAAAACTCATGGC 58.606 41.667 0.00 0.00 0.00 4.40
2500 3244 5.179368 ACGTGTACTGAATCAAAACTCATGG 59.821 40.000 0.00 0.00 0.00 3.66
2501 3245 6.073369 CACGTGTACTGAATCAAAACTCATG 58.927 40.000 7.58 0.00 0.00 3.07
2502 3246 5.334105 GCACGTGTACTGAATCAAAACTCAT 60.334 40.000 18.38 0.00 0.00 2.90
2503 3247 4.025229 GCACGTGTACTGAATCAAAACTCA 60.025 41.667 18.38 0.00 0.00 3.41
2504 3248 4.025229 TGCACGTGTACTGAATCAAAACTC 60.025 41.667 18.38 0.00 0.00 3.01
2505 3249 3.874543 TGCACGTGTACTGAATCAAAACT 59.125 39.130 18.38 0.00 0.00 2.66
2506 3250 4.203950 TGCACGTGTACTGAATCAAAAC 57.796 40.909 18.38 0.00 0.00 2.43
2507 3251 5.431420 AATGCACGTGTACTGAATCAAAA 57.569 34.783 18.38 0.00 0.00 2.44
2508 3252 5.211454 CAAATGCACGTGTACTGAATCAAA 58.789 37.500 18.38 0.00 0.00 2.69
2509 3253 4.782156 CAAATGCACGTGTACTGAATCAA 58.218 39.130 18.38 0.00 0.00 2.57
2510 3254 3.364864 GCAAATGCACGTGTACTGAATCA 60.365 43.478 18.38 3.95 41.59 2.57
2511 3255 3.163594 GCAAATGCACGTGTACTGAATC 58.836 45.455 18.38 0.00 41.59 2.52
2512 3256 3.201726 GCAAATGCACGTGTACTGAAT 57.798 42.857 18.38 0.00 41.59 2.57
2513 3257 2.679355 GCAAATGCACGTGTACTGAA 57.321 45.000 18.38 0.00 41.59 3.02
2543 3287 3.491792 GGGCGAACATTTCAGGTCAAAAA 60.492 43.478 0.00 0.00 0.00 1.94
2544 3288 2.035321 GGGCGAACATTTCAGGTCAAAA 59.965 45.455 0.00 0.00 0.00 2.44
2545 3289 1.611491 GGGCGAACATTTCAGGTCAAA 59.389 47.619 0.00 0.00 0.00 2.69
2546 3290 1.243902 GGGCGAACATTTCAGGTCAA 58.756 50.000 0.00 0.00 0.00 3.18
2547 3291 0.608035 GGGGCGAACATTTCAGGTCA 60.608 55.000 0.00 0.00 0.00 4.02
2548 3292 0.322546 AGGGGCGAACATTTCAGGTC 60.323 55.000 0.00 0.00 0.00 3.85
2549 3293 0.609131 CAGGGGCGAACATTTCAGGT 60.609 55.000 0.00 0.00 0.00 4.00
2550 3294 1.937546 GCAGGGGCGAACATTTCAGG 61.938 60.000 0.00 0.00 0.00 3.86
2551 3295 1.508088 GCAGGGGCGAACATTTCAG 59.492 57.895 0.00 0.00 0.00 3.02
2552 3296 3.680156 GCAGGGGCGAACATTTCA 58.320 55.556 0.00 0.00 0.00 2.69
2562 3306 1.957177 GGAATTAAAGCTAGCAGGGGC 59.043 52.381 18.83 0.00 41.61 5.80
2563 3307 3.217626 CAGGAATTAAAGCTAGCAGGGG 58.782 50.000 18.83 0.00 0.00 4.79
2564 3308 3.217626 CCAGGAATTAAAGCTAGCAGGG 58.782 50.000 18.83 0.00 0.00 4.45
2565 3309 3.217626 CCCAGGAATTAAAGCTAGCAGG 58.782 50.000 18.83 2.62 0.00 4.85
2566 3310 3.879892 GACCCAGGAATTAAAGCTAGCAG 59.120 47.826 18.83 0.00 0.00 4.24
2567 3311 3.371595 GGACCCAGGAATTAAAGCTAGCA 60.372 47.826 18.83 0.00 0.00 3.49
2568 3312 3.215151 GGACCCAGGAATTAAAGCTAGC 58.785 50.000 6.62 6.62 0.00 3.42
2569 3313 3.467803 CGGACCCAGGAATTAAAGCTAG 58.532 50.000 0.00 0.00 0.00 3.42
2570 3314 2.420967 GCGGACCCAGGAATTAAAGCTA 60.421 50.000 0.00 0.00 0.00 3.32
2571 3315 1.682087 GCGGACCCAGGAATTAAAGCT 60.682 52.381 0.00 0.00 0.00 3.74
2572 3316 0.738975 GCGGACCCAGGAATTAAAGC 59.261 55.000 0.00 0.00 0.00 3.51
2573 3317 1.340600 TGGCGGACCCAGGAATTAAAG 60.341 52.381 0.00 0.00 39.18 1.85
2574 3318 0.699399 TGGCGGACCCAGGAATTAAA 59.301 50.000 0.00 0.00 39.18 1.52
2575 3319 0.034863 GTGGCGGACCCAGGAATTAA 60.035 55.000 0.00 0.00 46.54 1.40
2576 3320 0.912487 AGTGGCGGACCCAGGAATTA 60.912 55.000 0.00 0.00 46.54 1.40
2577 3321 2.231380 AGTGGCGGACCCAGGAATT 61.231 57.895 0.00 0.00 46.54 2.17
2578 3322 2.610859 AGTGGCGGACCCAGGAAT 60.611 61.111 0.00 0.00 46.54 3.01
2579 3323 3.636231 CAGTGGCGGACCCAGGAA 61.636 66.667 0.00 0.00 46.54 3.36
2580 3324 4.954118 ACAGTGGCGGACCCAGGA 62.954 66.667 0.00 0.00 46.54 3.86
2581 3325 4.704833 CACAGTGGCGGACCCAGG 62.705 72.222 0.00 0.00 46.54 4.45
2582 3326 3.941188 ACACAGTGGCGGACCCAG 61.941 66.667 5.31 0.00 46.54 4.45
2583 3327 4.248842 CACACAGTGGCGGACCCA 62.249 66.667 5.31 0.00 42.79 4.51
2584 3328 2.748058 ATTCACACAGTGGCGGACCC 62.748 60.000 5.31 0.00 33.87 4.46
2585 3329 0.036765 TATTCACACAGTGGCGGACC 60.037 55.000 5.31 0.00 33.87 4.46
2586 3330 1.337823 ACTATTCACACAGTGGCGGAC 60.338 52.381 5.31 0.00 33.87 4.79
2587 3331 0.973632 ACTATTCACACAGTGGCGGA 59.026 50.000 5.31 0.00 33.87 5.54
2588 3332 1.464608 CAACTATTCACACAGTGGCGG 59.535 52.381 5.31 0.00 33.87 6.13
2589 3333 1.464608 CCAACTATTCACACAGTGGCG 59.535 52.381 5.31 0.00 33.87 5.69
2590 3334 2.504367 ACCAACTATTCACACAGTGGC 58.496 47.619 5.31 0.00 33.87 5.01
2591 3335 3.684788 GCTACCAACTATTCACACAGTGG 59.315 47.826 5.31 0.00 33.87 4.00
2592 3336 4.389992 CAGCTACCAACTATTCACACAGTG 59.610 45.833 0.00 0.00 34.45 3.66
2593 3337 4.040461 ACAGCTACCAACTATTCACACAGT 59.960 41.667 0.00 0.00 0.00 3.55
2594 3338 4.569943 ACAGCTACCAACTATTCACACAG 58.430 43.478 0.00 0.00 0.00 3.66
2595 3339 4.617253 ACAGCTACCAACTATTCACACA 57.383 40.909 0.00 0.00 0.00 3.72
2596 3340 5.689819 CAAACAGCTACCAACTATTCACAC 58.310 41.667 0.00 0.00 0.00 3.82
2604 3348 3.490348 AGAATGCAAACAGCTACCAACT 58.510 40.909 0.00 0.00 45.94 3.16
2609 3353 2.484264 ACGGAAGAATGCAAACAGCTAC 59.516 45.455 0.00 0.00 45.94 3.58
2795 3552 8.986477 AATGAATACACACAATTAGGAAAAGC 57.014 30.769 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.