Multiple sequence alignment - TraesCS6D01G198700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G198700 chr6D 100.000 3866 0 0 1 3866 276888105 276884240 0.000000e+00 7140
1 TraesCS6D01G198700 chr6D 93.165 556 37 1 1 555 276990543 276989988 0.000000e+00 815
2 TraesCS6D01G198700 chr6A 94.374 1813 59 16 839 2638 399208714 399210496 0.000000e+00 2743
3 TraesCS6D01G198700 chr6A 95.238 567 11 9 3302 3866 399212251 399212803 0.000000e+00 883
4 TraesCS6D01G198700 chr6A 89.921 506 28 11 2477 2978 399210494 399210980 7.050000e-177 630
5 TraesCS6D01G198700 chr6A 96.904 323 9 1 3544 3866 393031005 393030684 1.220000e-149 540
6 TraesCS6D01G198700 chr6A 90.000 190 14 4 1 189 513785341 513785156 1.390000e-59 241
7 TraesCS6D01G198700 chr6A 95.327 107 3 2 3191 3295 399212070 399212176 6.640000e-38 169
8 TraesCS6D01G198700 chr6B 94.857 1614 54 12 839 2445 438631073 438629482 0.000000e+00 2494
9 TraesCS6D01G198700 chr6B 95.406 566 14 5 3302 3866 438628357 438627803 0.000000e+00 891
10 TraesCS6D01G198700 chr6B 95.370 540 16 4 2442 2976 438629390 438628855 0.000000e+00 850
11 TraesCS6D01G198700 chr6B 89.521 334 20 1 2977 3295 438628765 438628432 3.600000e-110 409
12 TraesCS6D01G198700 chr6B 89.062 192 18 3 1 191 222823930 222824119 6.460000e-58 235
13 TraesCS6D01G198700 chr1A 91.146 192 12 5 1 189 572026241 572026052 4.960000e-64 255
14 TraesCS6D01G198700 chr3B 90.576 191 15 3 1 189 691424765 691424954 2.310000e-62 250
15 TraesCS6D01G198700 chr1D 89.848 197 16 2 1 196 315531528 315531721 2.310000e-62 250
16 TraesCS6D01G198700 chr2A 90.526 190 15 3 1 189 749950177 749950364 8.290000e-62 248
17 TraesCS6D01G198700 chr7A 90.104 192 14 5 1 189 423403607 423403418 1.070000e-60 244
18 TraesCS6D01G198700 chr5D 89.474 190 18 2 1 190 263352013 263351826 4.990000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G198700 chr6D 276884240 276888105 3865 True 7140.00 7140 100.0000 1 3866 1 chr6D.!!$R1 3865
1 TraesCS6D01G198700 chr6D 276989988 276990543 555 True 815.00 815 93.1650 1 555 1 chr6D.!!$R2 554
2 TraesCS6D01G198700 chr6A 399208714 399212803 4089 False 1106.25 2743 93.7150 839 3866 4 chr6A.!!$F1 3027
3 TraesCS6D01G198700 chr6B 438627803 438631073 3270 True 1161.00 2494 93.7885 839 3866 4 chr6B.!!$R1 3027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 586 0.036294 GAGCGTCCCTAGCACCTTTT 60.036 55.0 0.0 0.0 37.01 2.27 F
585 587 0.036294 AGCGTCCCTAGCACCTTTTC 60.036 55.0 0.0 0.0 37.01 2.29 F
827 829 0.172352 CGGCTCTTCTCACTCACTCC 59.828 60.0 0.0 0.0 0.00 3.85 F
837 839 0.319900 CACTCACTCCAACCACTCCG 60.320 60.0 0.0 0.0 0.00 4.63 F
899 902 0.802494 GTTACAACTGGATGGTGCCG 59.198 55.0 0.0 0.0 36.69 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2473 2588 0.547471 TCTGGATGCTGGGAACTCCA 60.547 55.000 0.00 0.00 44.79 3.86 R
2524 2639 9.256228 TCTATAGCTATAAAAACTCCGGATCAT 57.744 33.333 14.30 0.00 0.00 2.45 R
2723 2983 1.083489 TTAATGAGCAAGGGAACGCG 58.917 50.000 3.53 3.53 0.00 6.01 R
2763 3023 6.381481 TGCATCATTATGAAAGGTTAGCTG 57.619 37.500 0.00 0.00 34.84 4.24 R
2891 3151 1.376037 CGGTCCTTCCAGCAAGACC 60.376 63.158 0.00 0.00 33.29 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.919666 AAAGCATTGCCGTCATACAC 57.080 45.000 4.70 0.00 0.00 2.90
28 29 2.819608 AGCATTGCCGTCATACACTTTT 59.180 40.909 4.70 0.00 0.00 2.27
129 131 4.825634 GTCCGATATATCACCCGATATCCA 59.174 45.833 13.11 0.00 42.66 3.41
171 173 5.001232 CCAAACCGATATGAACCCGATATT 58.999 41.667 0.00 0.00 0.00 1.28
202 204 3.069443 TGAAGCTTGGGACCATTCAAAAC 59.931 43.478 2.10 0.00 0.00 2.43
203 205 1.613437 AGCTTGGGACCATTCAAAACG 59.387 47.619 0.00 0.00 0.00 3.60
246 248 2.025767 CTCTCCCATCCTGCTGACCG 62.026 65.000 0.00 0.00 0.00 4.79
299 301 5.184340 TCTAAATAAGAGCTCGCCACTAC 57.816 43.478 8.37 0.00 0.00 2.73
316 318 5.106908 GCCACTACTTGATTTCTCTTGACAC 60.107 44.000 0.00 0.00 0.00 3.67
322 324 1.800586 GATTTCTCTTGACACGCAGCA 59.199 47.619 0.00 0.00 0.00 4.41
323 325 1.882912 TTTCTCTTGACACGCAGCAT 58.117 45.000 0.00 0.00 0.00 3.79
410 412 2.426522 CATCAACCACCATCAAGTCGT 58.573 47.619 0.00 0.00 0.00 4.34
414 416 0.108585 ACCACCATCAAGTCGTTGCT 59.891 50.000 0.00 0.00 33.23 3.91
415 417 1.238439 CCACCATCAAGTCGTTGCTT 58.762 50.000 0.00 0.00 33.23 3.91
424 426 2.110835 TCGTTGCTTGAGCCTGCA 59.889 55.556 0.00 0.00 41.18 4.41
432 434 1.601412 GCTTGAGCCTGCACTTTTGAC 60.601 52.381 0.00 0.00 34.31 3.18
433 435 1.952296 CTTGAGCCTGCACTTTTGACT 59.048 47.619 0.00 0.00 0.00 3.41
438 440 1.882623 GCCTGCACTTTTGACTTAGCT 59.117 47.619 0.00 0.00 0.00 3.32
441 443 3.188048 CCTGCACTTTTGACTTAGCTCTG 59.812 47.826 0.00 0.00 0.00 3.35
442 444 4.060900 CTGCACTTTTGACTTAGCTCTGA 58.939 43.478 0.00 0.00 0.00 3.27
443 445 4.645535 TGCACTTTTGACTTAGCTCTGAT 58.354 39.130 0.00 0.00 0.00 2.90
507 509 9.929180 ACTATATTGTGTGCGATATTATCTGTT 57.071 29.630 2.36 0.00 34.44 3.16
514 516 4.617645 GTGCGATATTATCTGTTCCGACTC 59.382 45.833 2.36 0.00 0.00 3.36
525 527 4.523173 TCTGTTCCGACTCTGTATTTGACT 59.477 41.667 0.00 0.00 0.00 3.41
542 544 2.294074 GACTCCTATGTCGTCTCTGCT 58.706 52.381 0.00 0.00 0.00 4.24
555 557 8.317891 TGTCGTCTCTGCTTTTATTAATTCAA 57.682 30.769 0.00 0.00 0.00 2.69
556 558 8.946085 TGTCGTCTCTGCTTTTATTAATTCAAT 58.054 29.630 0.00 0.00 0.00 2.57
569 571 9.820229 TTTATTAATTCAATATAAAGCCGAGCG 57.180 29.630 0.00 0.00 0.00 5.03
570 572 6.854496 TTAATTCAATATAAAGCCGAGCGT 57.146 33.333 0.00 0.00 0.00 5.07
571 573 4.992381 ATTCAATATAAAGCCGAGCGTC 57.008 40.909 0.00 0.00 0.00 5.19
572 574 2.750948 TCAATATAAAGCCGAGCGTCC 58.249 47.619 0.00 0.00 0.00 4.79
573 575 1.798813 CAATATAAAGCCGAGCGTCCC 59.201 52.381 0.00 0.00 0.00 4.46
574 576 1.339097 ATATAAAGCCGAGCGTCCCT 58.661 50.000 0.00 0.00 0.00 4.20
575 577 1.985473 TATAAAGCCGAGCGTCCCTA 58.015 50.000 0.00 0.00 0.00 3.53
576 578 0.674534 ATAAAGCCGAGCGTCCCTAG 59.325 55.000 0.00 0.00 0.00 3.02
577 579 2.012902 TAAAGCCGAGCGTCCCTAGC 62.013 60.000 0.00 0.00 0.00 3.42
579 581 4.874977 GCCGAGCGTCCCTAGCAC 62.875 72.222 0.00 0.00 37.01 4.40
580 582 4.208686 CCGAGCGTCCCTAGCACC 62.209 72.222 0.00 0.00 37.01 5.01
581 583 3.141488 CGAGCGTCCCTAGCACCT 61.141 66.667 0.00 0.00 37.01 4.00
582 584 2.711922 CGAGCGTCCCTAGCACCTT 61.712 63.158 0.00 0.00 37.01 3.50
583 585 1.597461 GAGCGTCCCTAGCACCTTT 59.403 57.895 0.00 0.00 37.01 3.11
584 586 0.036294 GAGCGTCCCTAGCACCTTTT 60.036 55.000 0.00 0.00 37.01 2.27
585 587 0.036294 AGCGTCCCTAGCACCTTTTC 60.036 55.000 0.00 0.00 37.01 2.29
586 588 0.036294 GCGTCCCTAGCACCTTTTCT 60.036 55.000 0.00 0.00 34.19 2.52
587 589 2.007547 GCGTCCCTAGCACCTTTTCTC 61.008 57.143 0.00 0.00 34.19 2.87
588 590 1.550976 CGTCCCTAGCACCTTTTCTCT 59.449 52.381 0.00 0.00 0.00 3.10
589 591 2.758979 CGTCCCTAGCACCTTTTCTCTA 59.241 50.000 0.00 0.00 0.00 2.43
590 592 3.194968 CGTCCCTAGCACCTTTTCTCTAA 59.805 47.826 0.00 0.00 0.00 2.10
591 593 4.322499 CGTCCCTAGCACCTTTTCTCTAAA 60.322 45.833 0.00 0.00 0.00 1.85
592 594 5.557866 GTCCCTAGCACCTTTTCTCTAAAA 58.442 41.667 0.00 0.00 33.58 1.52
593 595 6.002082 GTCCCTAGCACCTTTTCTCTAAAAA 58.998 40.000 0.00 0.00 34.26 1.94
614 616 6.419980 AAAACAATGTTCAAACACACATGG 57.580 33.333 0.00 0.00 42.51 3.66
615 617 4.734398 ACAATGTTCAAACACACATGGT 57.266 36.364 0.00 0.00 42.51 3.55
616 618 5.843673 ACAATGTTCAAACACACATGGTA 57.156 34.783 0.00 0.00 42.51 3.25
617 619 6.403866 ACAATGTTCAAACACACATGGTAT 57.596 33.333 0.00 0.00 42.51 2.73
618 620 7.517614 ACAATGTTCAAACACACATGGTATA 57.482 32.000 0.00 0.00 42.51 1.47
619 621 7.946207 ACAATGTTCAAACACACATGGTATAA 58.054 30.769 0.00 0.00 42.51 0.98
620 622 8.417106 ACAATGTTCAAACACACATGGTATAAA 58.583 29.630 0.00 0.00 42.51 1.40
621 623 9.254133 CAATGTTCAAACACACATGGTATAAAA 57.746 29.630 0.00 0.00 42.51 1.52
622 624 9.995003 AATGTTCAAACACACATGGTATAAAAT 57.005 25.926 0.00 0.00 42.51 1.82
623 625 9.638239 ATGTTCAAACACACATGGTATAAAATC 57.362 29.630 0.00 0.00 42.51 2.17
624 626 8.085296 TGTTCAAACACACATGGTATAAAATCC 58.915 33.333 0.00 0.00 33.17 3.01
625 627 6.847400 TCAAACACACATGGTATAAAATCCG 58.153 36.000 0.00 0.00 0.00 4.18
626 628 5.828299 AACACACATGGTATAAAATCCGG 57.172 39.130 0.00 0.00 0.00 5.14
627 629 4.850680 ACACACATGGTATAAAATCCGGT 58.149 39.130 0.00 0.00 0.00 5.28
628 630 5.258051 ACACACATGGTATAAAATCCGGTT 58.742 37.500 0.00 0.00 0.00 4.44
629 631 5.355910 ACACACATGGTATAAAATCCGGTTC 59.644 40.000 0.00 0.00 0.00 3.62
630 632 5.355630 CACACATGGTATAAAATCCGGTTCA 59.644 40.000 0.00 0.00 0.00 3.18
631 633 6.039270 CACACATGGTATAAAATCCGGTTCAT 59.961 38.462 0.00 0.00 0.00 2.57
632 634 6.039270 ACACATGGTATAAAATCCGGTTCATG 59.961 38.462 0.00 4.05 36.51 3.07
633 635 6.039270 CACATGGTATAAAATCCGGTTCATGT 59.961 38.462 0.00 4.70 41.94 3.21
634 636 6.039270 ACATGGTATAAAATCCGGTTCATGTG 59.961 38.462 0.00 0.00 40.41 3.21
635 637 5.502079 TGGTATAAAATCCGGTTCATGTGT 58.498 37.500 0.00 0.00 0.00 3.72
636 638 5.946972 TGGTATAAAATCCGGTTCATGTGTT 59.053 36.000 0.00 0.00 0.00 3.32
637 639 6.434652 TGGTATAAAATCCGGTTCATGTGTTT 59.565 34.615 0.00 0.00 0.00 2.83
638 640 6.750039 GGTATAAAATCCGGTTCATGTGTTTG 59.250 38.462 0.00 0.00 0.00 2.93
639 641 2.723124 AATCCGGTTCATGTGTTTGC 57.277 45.000 0.00 0.00 0.00 3.68
640 642 1.909700 ATCCGGTTCATGTGTTTGCT 58.090 45.000 0.00 0.00 0.00 3.91
641 643 1.234821 TCCGGTTCATGTGTTTGCTC 58.765 50.000 0.00 0.00 0.00 4.26
642 644 0.950836 CCGGTTCATGTGTTTGCTCA 59.049 50.000 0.00 0.00 0.00 4.26
643 645 1.541147 CCGGTTCATGTGTTTGCTCAT 59.459 47.619 0.00 0.00 0.00 2.90
644 646 2.414559 CCGGTTCATGTGTTTGCTCATC 60.415 50.000 0.00 0.00 0.00 2.92
645 647 2.725759 CGGTTCATGTGTTTGCTCATCG 60.726 50.000 0.00 0.00 0.00 3.84
646 648 2.414559 GGTTCATGTGTTTGCTCATCGG 60.415 50.000 0.00 0.00 0.00 4.18
647 649 2.183478 TCATGTGTTTGCTCATCGGT 57.817 45.000 0.00 0.00 0.00 4.69
648 650 1.805943 TCATGTGTTTGCTCATCGGTG 59.194 47.619 0.00 0.00 0.00 4.94
649 651 1.805943 CATGTGTTTGCTCATCGGTGA 59.194 47.619 0.00 0.00 0.00 4.02
650 652 2.183478 TGTGTTTGCTCATCGGTGAT 57.817 45.000 0.00 0.00 32.98 3.06
651 653 3.326836 TGTGTTTGCTCATCGGTGATA 57.673 42.857 0.00 0.00 32.98 2.15
652 654 3.000041 TGTGTTTGCTCATCGGTGATAC 59.000 45.455 0.00 0.00 32.98 2.24
653 655 3.262420 GTGTTTGCTCATCGGTGATACT 58.738 45.455 0.00 0.00 32.98 2.12
654 656 4.081917 TGTGTTTGCTCATCGGTGATACTA 60.082 41.667 0.00 0.00 32.98 1.82
655 657 4.504461 GTGTTTGCTCATCGGTGATACTAG 59.496 45.833 0.00 0.00 32.98 2.57
656 658 4.401202 TGTTTGCTCATCGGTGATACTAGA 59.599 41.667 0.00 0.00 32.98 2.43
657 659 5.069119 TGTTTGCTCATCGGTGATACTAGAT 59.931 40.000 0.00 0.00 32.98 1.98
658 660 6.264518 TGTTTGCTCATCGGTGATACTAGATA 59.735 38.462 0.00 0.00 32.98 1.98
659 661 6.894339 TTGCTCATCGGTGATACTAGATAA 57.106 37.500 0.00 0.00 32.98 1.75
660 662 6.255596 TGCTCATCGGTGATACTAGATAAC 57.744 41.667 0.00 0.00 32.98 1.89
661 663 5.768164 TGCTCATCGGTGATACTAGATAACA 59.232 40.000 0.00 0.00 32.98 2.41
662 664 6.264518 TGCTCATCGGTGATACTAGATAACAA 59.735 38.462 0.00 0.00 32.98 2.83
663 665 7.039714 TGCTCATCGGTGATACTAGATAACAAT 60.040 37.037 0.00 0.00 32.98 2.71
664 666 7.274468 GCTCATCGGTGATACTAGATAACAATG 59.726 40.741 0.00 0.00 32.98 2.82
665 667 7.602753 TCATCGGTGATACTAGATAACAATGG 58.397 38.462 0.00 0.00 0.00 3.16
666 668 5.779922 TCGGTGATACTAGATAACAATGGC 58.220 41.667 0.00 0.00 0.00 4.40
667 669 4.621460 CGGTGATACTAGATAACAATGGCG 59.379 45.833 0.00 0.00 0.00 5.69
668 670 5.539048 GGTGATACTAGATAACAATGGCGT 58.461 41.667 0.00 0.00 0.00 5.68
669 671 5.405571 GGTGATACTAGATAACAATGGCGTG 59.594 44.000 0.00 0.00 0.00 5.34
670 672 6.213677 GTGATACTAGATAACAATGGCGTGA 58.786 40.000 0.00 0.00 0.00 4.35
671 673 6.868864 GTGATACTAGATAACAATGGCGTGAT 59.131 38.462 0.00 0.00 0.00 3.06
672 674 7.385205 GTGATACTAGATAACAATGGCGTGATT 59.615 37.037 0.00 0.00 0.00 2.57
673 675 5.991328 ACTAGATAACAATGGCGTGATTG 57.009 39.130 0.00 6.91 38.97 2.67
674 676 5.670485 ACTAGATAACAATGGCGTGATTGA 58.330 37.500 13.44 0.00 36.89 2.57
675 677 6.112734 ACTAGATAACAATGGCGTGATTGAA 58.887 36.000 13.44 4.14 36.89 2.69
676 678 5.490139 AGATAACAATGGCGTGATTGAAG 57.510 39.130 13.44 0.00 36.89 3.02
677 679 5.185454 AGATAACAATGGCGTGATTGAAGA 58.815 37.500 13.44 1.80 36.89 2.87
678 680 3.837213 AACAATGGCGTGATTGAAGAG 57.163 42.857 13.44 0.00 36.89 2.85
679 681 3.057969 ACAATGGCGTGATTGAAGAGA 57.942 42.857 13.44 0.00 36.89 3.10
680 682 3.411446 ACAATGGCGTGATTGAAGAGAA 58.589 40.909 13.44 0.00 36.89 2.87
681 683 4.012374 ACAATGGCGTGATTGAAGAGAAT 58.988 39.130 13.44 0.00 36.89 2.40
682 684 5.185454 ACAATGGCGTGATTGAAGAGAATA 58.815 37.500 13.44 0.00 36.89 1.75
683 685 5.295292 ACAATGGCGTGATTGAAGAGAATAG 59.705 40.000 13.44 0.00 36.89 1.73
684 686 4.736126 TGGCGTGATTGAAGAGAATAGA 57.264 40.909 0.00 0.00 0.00 1.98
685 687 5.282055 TGGCGTGATTGAAGAGAATAGAT 57.718 39.130 0.00 0.00 0.00 1.98
686 688 5.292765 TGGCGTGATTGAAGAGAATAGATC 58.707 41.667 0.00 0.00 0.00 2.75
687 689 4.384247 GGCGTGATTGAAGAGAATAGATCG 59.616 45.833 0.00 0.00 0.00 3.69
688 690 4.384247 GCGTGATTGAAGAGAATAGATCGG 59.616 45.833 0.00 0.00 0.00 4.18
689 691 5.763088 CGTGATTGAAGAGAATAGATCGGA 58.237 41.667 0.00 0.00 0.00 4.55
690 692 6.209361 CGTGATTGAAGAGAATAGATCGGAA 58.791 40.000 0.00 0.00 0.00 4.30
691 693 6.362016 CGTGATTGAAGAGAATAGATCGGAAG 59.638 42.308 0.00 0.00 0.00 3.46
692 694 7.206687 GTGATTGAAGAGAATAGATCGGAAGT 58.793 38.462 0.00 0.00 0.00 3.01
693 695 7.708752 GTGATTGAAGAGAATAGATCGGAAGTT 59.291 37.037 0.00 0.00 0.00 2.66
694 696 8.260818 TGATTGAAGAGAATAGATCGGAAGTTT 58.739 33.333 0.00 0.00 0.00 2.66
695 697 9.103861 GATTGAAGAGAATAGATCGGAAGTTTT 57.896 33.333 0.00 0.00 0.00 2.43
696 698 8.480643 TTGAAGAGAATAGATCGGAAGTTTTC 57.519 34.615 0.00 0.00 0.00 2.29
697 699 7.841956 TGAAGAGAATAGATCGGAAGTTTTCT 58.158 34.615 0.00 0.00 0.00 2.52
698 700 7.976734 TGAAGAGAATAGATCGGAAGTTTTCTC 59.023 37.037 12.45 12.45 38.44 2.87
699 701 6.811954 AGAGAATAGATCGGAAGTTTTCTCC 58.188 40.000 14.91 0.00 38.77 3.71
744 746 3.418913 CGCCGTGCAACCAATCGA 61.419 61.111 0.00 0.00 0.00 3.59
745 747 2.175811 GCCGTGCAACCAATCGAC 59.824 61.111 0.00 0.00 0.00 4.20
746 748 2.612567 GCCGTGCAACCAATCGACA 61.613 57.895 0.00 0.00 0.00 4.35
747 749 1.922135 GCCGTGCAACCAATCGACAT 61.922 55.000 0.00 0.00 0.00 3.06
748 750 0.179192 CCGTGCAACCAATCGACATG 60.179 55.000 0.00 0.00 0.00 3.21
749 751 0.795698 CGTGCAACCAATCGACATGA 59.204 50.000 0.00 0.00 0.00 3.07
750 752 1.398041 CGTGCAACCAATCGACATGAT 59.602 47.619 0.00 0.00 39.67 2.45
751 753 2.607180 CGTGCAACCAATCGACATGATA 59.393 45.455 0.00 0.00 35.84 2.15
752 754 3.544048 CGTGCAACCAATCGACATGATAC 60.544 47.826 0.00 0.00 35.84 2.24
753 755 2.607180 TGCAACCAATCGACATGATACG 59.393 45.455 0.00 2.41 35.84 3.06
754 756 2.607635 GCAACCAATCGACATGATACGT 59.392 45.455 0.00 0.00 35.84 3.57
755 757 3.063452 GCAACCAATCGACATGATACGTT 59.937 43.478 0.00 0.00 35.84 3.99
756 758 4.577639 CAACCAATCGACATGATACGTTG 58.422 43.478 0.00 9.08 38.65 4.10
757 759 3.194861 ACCAATCGACATGATACGTTGG 58.805 45.455 23.70 23.70 41.44 3.77
758 760 3.194861 CCAATCGACATGATACGTTGGT 58.805 45.455 20.94 0.00 35.84 3.67
759 761 3.245284 CCAATCGACATGATACGTTGGTC 59.755 47.826 20.94 0.00 35.84 4.02
760 762 3.793797 ATCGACATGATACGTTGGTCA 57.206 42.857 0.00 0.00 34.83 4.02
761 763 3.793797 TCGACATGATACGTTGGTCAT 57.206 42.857 0.00 0.00 35.54 3.06
762 764 4.904253 TCGACATGATACGTTGGTCATA 57.096 40.909 0.00 0.00 33.52 2.15
763 765 5.251601 TCGACATGATACGTTGGTCATAA 57.748 39.130 0.00 0.00 33.52 1.90
764 766 5.652518 TCGACATGATACGTTGGTCATAAA 58.347 37.500 0.00 0.00 33.52 1.40
765 767 6.100668 TCGACATGATACGTTGGTCATAAAA 58.899 36.000 0.00 0.00 33.52 1.52
766 768 6.035220 TCGACATGATACGTTGGTCATAAAAC 59.965 38.462 0.00 0.00 33.52 2.43
767 769 6.035650 CGACATGATACGTTGGTCATAAAACT 59.964 38.462 0.00 0.00 33.52 2.66
768 770 7.221259 CGACATGATACGTTGGTCATAAAACTA 59.779 37.037 0.00 0.00 33.52 2.24
769 771 8.780846 ACATGATACGTTGGTCATAAAACTAA 57.219 30.769 0.00 0.00 33.52 2.24
770 772 9.221933 ACATGATACGTTGGTCATAAAACTAAA 57.778 29.630 0.00 0.00 33.52 1.85
771 773 9.485591 CATGATACGTTGGTCATAAAACTAAAC 57.514 33.333 0.00 0.00 33.52 2.01
772 774 8.031848 TGATACGTTGGTCATAAAACTAAACC 57.968 34.615 0.00 0.00 0.00 3.27
773 775 7.879160 TGATACGTTGGTCATAAAACTAAACCT 59.121 33.333 0.00 0.00 0.00 3.50
774 776 9.369904 GATACGTTGGTCATAAAACTAAACCTA 57.630 33.333 0.00 0.00 0.00 3.08
775 777 9.723601 ATACGTTGGTCATAAAACTAAACCTAA 57.276 29.630 0.00 0.00 0.00 2.69
776 778 8.449251 ACGTTGGTCATAAAACTAAACCTAAA 57.551 30.769 0.00 0.00 0.00 1.85
777 779 8.344831 ACGTTGGTCATAAAACTAAACCTAAAC 58.655 33.333 0.00 0.00 0.00 2.01
778 780 7.804600 CGTTGGTCATAAAACTAAACCTAAACC 59.195 37.037 0.00 0.00 0.00 3.27
779 781 8.853126 GTTGGTCATAAAACTAAACCTAAACCT 58.147 33.333 0.00 0.00 0.00 3.50
780 782 8.398878 TGGTCATAAAACTAAACCTAAACCTG 57.601 34.615 0.00 0.00 0.00 4.00
781 783 7.449086 TGGTCATAAAACTAAACCTAAACCTGG 59.551 37.037 0.00 0.00 0.00 4.45
782 784 7.310664 GTCATAAAACTAAACCTAAACCTGGC 58.689 38.462 0.00 0.00 0.00 4.85
783 785 7.176165 GTCATAAAACTAAACCTAAACCTGGCT 59.824 37.037 0.00 0.00 0.00 4.75
784 786 7.726738 TCATAAAACTAAACCTAAACCTGGCTT 59.273 33.333 0.00 0.00 0.00 4.35
785 787 5.784578 AAACTAAACCTAAACCTGGCTTG 57.215 39.130 0.00 0.00 0.00 4.01
786 788 4.448720 ACTAAACCTAAACCTGGCTTGT 57.551 40.909 0.00 0.00 0.00 3.16
787 789 4.395625 ACTAAACCTAAACCTGGCTTGTC 58.604 43.478 0.00 0.00 0.00 3.18
788 790 3.306472 AAACCTAAACCTGGCTTGTCA 57.694 42.857 0.00 0.00 0.00 3.58
789 791 3.306472 AACCTAAACCTGGCTTGTCAA 57.694 42.857 0.00 0.00 0.00 3.18
790 792 3.525800 ACCTAAACCTGGCTTGTCAAT 57.474 42.857 0.00 0.00 0.00 2.57
791 793 3.157087 ACCTAAACCTGGCTTGTCAATG 58.843 45.455 0.00 0.00 0.00 2.82
792 794 3.181434 ACCTAAACCTGGCTTGTCAATGA 60.181 43.478 0.00 0.00 0.00 2.57
793 795 3.191371 CCTAAACCTGGCTTGTCAATGAC 59.809 47.826 6.41 6.41 0.00 3.06
794 796 2.363306 AACCTGGCTTGTCAATGACA 57.637 45.000 12.63 12.63 41.09 3.58
795 797 1.609208 ACCTGGCTTGTCAATGACAC 58.391 50.000 16.50 5.50 42.60 3.67
796 798 0.883833 CCTGGCTTGTCAATGACACC 59.116 55.000 16.50 15.09 42.60 4.16
797 799 0.518636 CTGGCTTGTCAATGACACCG 59.481 55.000 16.50 11.13 42.60 4.94
798 800 1.210155 GGCTTGTCAATGACACCGC 59.790 57.895 16.50 19.56 42.60 5.68
799 801 1.514678 GGCTTGTCAATGACACCGCA 61.515 55.000 26.95 10.98 42.60 5.69
800 802 0.310543 GCTTGTCAATGACACCGCAA 59.689 50.000 23.42 7.93 42.60 4.85
801 803 1.268999 GCTTGTCAATGACACCGCAAA 60.269 47.619 23.42 7.32 42.60 3.68
802 804 2.607771 GCTTGTCAATGACACCGCAAAT 60.608 45.455 23.42 0.00 42.60 2.32
803 805 2.987413 TGTCAATGACACCGCAAATC 57.013 45.000 12.63 0.00 37.67 2.17
804 806 2.225467 TGTCAATGACACCGCAAATCA 58.775 42.857 12.63 0.00 37.67 2.57
805 807 2.226200 TGTCAATGACACCGCAAATCAG 59.774 45.455 12.63 0.00 37.67 2.90
806 808 1.199789 TCAATGACACCGCAAATCAGC 59.800 47.619 0.00 0.00 0.00 4.26
807 809 1.200716 CAATGACACCGCAAATCAGCT 59.799 47.619 0.00 0.00 0.00 4.24
808 810 1.089920 ATGACACCGCAAATCAGCTC 58.910 50.000 0.00 0.00 0.00 4.09
809 811 1.291184 TGACACCGCAAATCAGCTCG 61.291 55.000 0.00 0.00 0.00 5.03
810 812 1.970917 GACACCGCAAATCAGCTCGG 61.971 60.000 7.66 7.66 46.61 4.63
811 813 3.127533 ACCGCAAATCAGCTCGGC 61.128 61.111 9.03 0.00 45.23 5.54
812 814 2.821366 CCGCAAATCAGCTCGGCT 60.821 61.111 0.00 0.00 40.77 5.52
813 815 2.705826 CGCAAATCAGCTCGGCTC 59.294 61.111 0.00 0.00 36.40 4.70
814 816 1.812922 CGCAAATCAGCTCGGCTCT 60.813 57.895 0.00 0.00 36.40 4.09
815 817 1.364626 CGCAAATCAGCTCGGCTCTT 61.365 55.000 0.00 0.00 36.40 2.85
816 818 0.376502 GCAAATCAGCTCGGCTCTTC 59.623 55.000 0.00 0.00 36.40 2.87
817 819 2.011046 GCAAATCAGCTCGGCTCTTCT 61.011 52.381 0.00 0.00 36.40 2.85
818 820 1.932511 CAAATCAGCTCGGCTCTTCTC 59.067 52.381 0.00 0.00 36.40 2.87
819 821 1.189752 AATCAGCTCGGCTCTTCTCA 58.810 50.000 0.00 0.00 36.40 3.27
820 822 0.459489 ATCAGCTCGGCTCTTCTCAC 59.541 55.000 0.00 0.00 36.40 3.51
821 823 0.610509 TCAGCTCGGCTCTTCTCACT 60.611 55.000 0.00 0.00 36.40 3.41
822 824 0.179140 CAGCTCGGCTCTTCTCACTC 60.179 60.000 0.00 0.00 36.40 3.51
823 825 0.610509 AGCTCGGCTCTTCTCACTCA 60.611 55.000 0.00 0.00 30.62 3.41
824 826 0.457681 GCTCGGCTCTTCTCACTCAC 60.458 60.000 0.00 0.00 0.00 3.51
825 827 1.173043 CTCGGCTCTTCTCACTCACT 58.827 55.000 0.00 0.00 0.00 3.41
826 828 1.132262 CTCGGCTCTTCTCACTCACTC 59.868 57.143 0.00 0.00 0.00 3.51
827 829 0.172352 CGGCTCTTCTCACTCACTCC 59.828 60.000 0.00 0.00 0.00 3.85
828 830 1.261480 GGCTCTTCTCACTCACTCCA 58.739 55.000 0.00 0.00 0.00 3.86
829 831 1.620819 GGCTCTTCTCACTCACTCCAA 59.379 52.381 0.00 0.00 0.00 3.53
830 832 2.611722 GGCTCTTCTCACTCACTCCAAC 60.612 54.545 0.00 0.00 0.00 3.77
831 833 2.611722 GCTCTTCTCACTCACTCCAACC 60.612 54.545 0.00 0.00 0.00 3.77
832 834 2.630098 CTCTTCTCACTCACTCCAACCA 59.370 50.000 0.00 0.00 0.00 3.67
833 835 2.365617 TCTTCTCACTCACTCCAACCAC 59.634 50.000 0.00 0.00 0.00 4.16
834 836 2.088104 TCTCACTCACTCCAACCACT 57.912 50.000 0.00 0.00 0.00 4.00
835 837 1.964223 TCTCACTCACTCCAACCACTC 59.036 52.381 0.00 0.00 0.00 3.51
836 838 1.001406 CTCACTCACTCCAACCACTCC 59.999 57.143 0.00 0.00 0.00 3.85
837 839 0.319900 CACTCACTCCAACCACTCCG 60.320 60.000 0.00 0.00 0.00 4.63
874 877 4.828296 TCCGGGTCCCGCCTCTAC 62.828 72.222 25.88 0.00 46.86 2.59
883 886 2.442643 CGCCTCTACCCGGGGTTA 60.443 66.667 26.48 12.37 37.09 2.85
899 902 0.802494 GTTACAACTGGATGGTGCCG 59.198 55.000 0.00 0.00 36.69 5.69
913 919 1.439679 GTGCCGGTCGAGAAAGATTT 58.560 50.000 1.90 0.00 0.00 2.17
914 920 1.804748 GTGCCGGTCGAGAAAGATTTT 59.195 47.619 1.90 0.00 0.00 1.82
1250 1256 2.279784 CTCTTGCGGGATCTCGGC 60.280 66.667 18.35 9.77 41.41 5.54
1369 1380 1.608717 TTCCTCCTGCCTCGCTTCTC 61.609 60.000 0.00 0.00 0.00 2.87
1401 1412 2.423926 TCTCTTCTTGTCACGCACTC 57.576 50.000 0.00 0.00 0.00 3.51
1418 1429 3.432588 CCTCGCTCCGTCTCGTGT 61.433 66.667 0.00 0.00 0.00 4.49
1427 1438 3.678548 GCTCCGTCTCGTGTTTATTTCTT 59.321 43.478 0.00 0.00 0.00 2.52
1428 1439 4.434330 GCTCCGTCTCGTGTTTATTTCTTG 60.434 45.833 0.00 0.00 0.00 3.02
1464 1475 1.640149 TGGCCCATCTTGAATCTCCAA 59.360 47.619 0.00 0.00 0.00 3.53
1676 1689 1.568118 CCCACCACCCCGATAAACCT 61.568 60.000 0.00 0.00 0.00 3.50
1837 1855 8.592529 TGATTCTTTCATGTTGAATTGGGATA 57.407 30.769 10.23 0.00 36.11 2.59
1838 1856 9.204337 TGATTCTTTCATGTTGAATTGGGATAT 57.796 29.630 10.23 0.00 36.11 1.63
1908 1926 5.215252 ACAGAATACGTTCCATATCTGGG 57.785 43.478 0.00 0.00 43.34 4.45
2095 2113 7.953752 ACCGTAAGAGATCCTTCCTATTTAAG 58.046 38.462 0.38 0.00 43.02 1.85
2179 2199 5.047660 GGTTTTGGTTGTAGGAATATGCACA 60.048 40.000 0.00 0.00 0.00 4.57
2184 2204 5.423931 TGGTTGTAGGAATATGCACAGACTA 59.576 40.000 0.00 0.00 0.00 2.59
2209 2229 4.520874 TGTGTTTTGGACTTTGTGAGTTCA 59.479 37.500 0.00 0.00 42.28 3.18
2269 2289 6.536582 CGTTGGAAGATGTTGTGATCTATTCT 59.463 38.462 0.00 0.00 32.11 2.40
2281 2301 3.969312 TGATCTATTCTGAGGGATGTGCA 59.031 43.478 0.00 0.00 0.00 4.57
2317 2337 2.688446 TGTCGAAGTAGCCAGGAGTATG 59.312 50.000 0.00 0.00 0.00 2.39
2402 2422 6.773200 TGAGAGTGTAGACTTCAGAAAGAGAA 59.227 38.462 0.00 0.00 36.30 2.87
2473 2588 7.908193 GTTTTGTAAAACAGACGACATTGAT 57.092 32.000 13.69 0.00 45.72 2.57
2524 2639 4.158786 CCATACCAAAATCCCATGCCATA 58.841 43.478 0.00 0.00 0.00 2.74
2579 2696 8.287439 TCAACAAAGAGGAAAATTGTGTTCTA 57.713 30.769 0.00 0.00 37.36 2.10
2617 2734 6.813152 GCACTAGTTTTACATGGAAAATGCAT 59.187 34.615 24.71 13.31 33.67 3.96
2623 2740 2.609350 ACATGGAAAATGCATTGTCGC 58.391 42.857 20.82 14.85 0.00 5.19
2630 2747 2.817470 AATGCATTGTCGCGTTGGCC 62.817 55.000 12.09 0.00 39.62 5.36
2672 2932 2.874701 GTTCAGCTGCTTTCTCTTGACA 59.125 45.455 9.47 0.00 0.00 3.58
2690 2950 5.151297 TGACATGAAAGTCACTGCATAGA 57.849 39.130 0.00 0.00 43.18 1.98
2835 3095 2.659063 GGCCAAATCAAGGGGTGCC 61.659 63.158 0.00 0.00 0.00 5.01
2913 3173 2.738213 CTTGCTGGAAGGACCGTGCT 62.738 60.000 0.37 0.00 42.61 4.40
2914 3174 1.476845 TTGCTGGAAGGACCGTGCTA 61.477 55.000 0.01 0.00 42.61 3.49
2993 3350 3.664107 TGCCGCAGAATAGATACCATTC 58.336 45.455 0.00 0.00 33.43 2.67
3008 3365 6.725834 AGATACCATTCCCAATCTGTGTTTTT 59.274 34.615 0.00 0.00 0.00 1.94
3009 3366 7.893302 AGATACCATTCCCAATCTGTGTTTTTA 59.107 33.333 0.00 0.00 0.00 1.52
3024 3381 2.250348 TTTTATGCCGCGTAGTTTGC 57.750 45.000 4.92 0.00 0.00 3.68
3045 3402 3.507622 GCATATATTCTGGGTTCCAAGGC 59.492 47.826 0.00 0.00 30.80 4.35
3051 3408 3.365265 GGGTTCCAAGGCTGTGCG 61.365 66.667 0.00 0.00 0.00 5.34
3068 3425 4.048504 TGTGCGTCATAGAATATGAACCG 58.951 43.478 1.19 3.87 0.00 4.44
3102 3459 7.307131 TGATGAGATTGCTTGGATAGACATA 57.693 36.000 0.00 0.00 0.00 2.29
3110 3467 6.499106 TGCTTGGATAGACATAGATTGGAA 57.501 37.500 0.00 0.00 0.00 3.53
3118 3475 3.069729 AGACATAGATTGGAACGGGTAGC 59.930 47.826 0.00 0.00 0.00 3.58
3141 3498 1.517257 CCGTCAGACCTCACGATGC 60.517 63.158 0.00 0.00 38.32 3.91
3163 3520 1.339631 TGTTGCCTAGTGCCACCATAC 60.340 52.381 0.00 0.00 40.16 2.39
3194 4321 2.202743 GCGTATGCTGTCCGCTGA 60.203 61.111 0.00 0.00 43.81 4.26
3288 4432 1.226945 GCAAAGCAAACGCCACACT 60.227 52.632 0.00 0.00 0.00 3.55
3295 4439 0.866906 CAAACGCCACACTGCACAAG 60.867 55.000 0.00 0.00 0.00 3.16
3298 4442 3.585990 GCCACACTGCACAAGCGT 61.586 61.111 0.00 0.00 46.23 5.07
3299 4443 2.328989 CCACACTGCACAAGCGTG 59.671 61.111 0.00 0.00 46.23 5.34
3313 4525 5.479306 CACAAGCGTGCCTATACCTATATT 58.521 41.667 0.00 0.00 36.06 1.28
3314 4526 5.348724 CACAAGCGTGCCTATACCTATATTG 59.651 44.000 0.00 0.00 36.06 1.90
3315 4527 4.124851 AGCGTGCCTATACCTATATTGC 57.875 45.455 0.00 0.00 0.00 3.56
3345 4557 1.344114 TGCCACAGGGAAATCTTTTGC 59.656 47.619 0.00 0.00 35.59 3.68
3358 4570 7.148804 GGGAAATCTTTTGCGTTCAACTATTTC 60.149 37.037 0.00 0.00 36.00 2.17
3361 4573 5.997385 TCTTTTGCGTTCAACTATTTCCTC 58.003 37.500 0.00 0.00 30.75 3.71
3406 4619 4.712763 CTGAAAGACAGGCGAACATAAAC 58.287 43.478 0.00 0.00 42.39 2.01
3422 4635 9.194716 CGAACATAAACAAATGTACTCAATACG 57.805 33.333 0.00 0.00 39.16 3.06
3429 4642 6.177610 ACAAATGTACTCAATACGGGTCAAT 58.822 36.000 0.00 0.00 36.47 2.57
3430 4643 7.332557 ACAAATGTACTCAATACGGGTCAATA 58.667 34.615 0.00 0.00 36.47 1.90
3431 4644 7.990886 ACAAATGTACTCAATACGGGTCAATAT 59.009 33.333 0.00 0.00 36.47 1.28
3432 4645 9.483916 CAAATGTACTCAATACGGGTCAATATA 57.516 33.333 0.00 0.00 36.47 0.86
3799 5013 7.123098 TCCATATGTTCAATGCTTGACAAGATT 59.877 33.333 19.51 12.01 39.87 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 150 2.319136 TCGGGTTCATATCGGTTTGG 57.681 50.000 0.00 0.00 0.00 3.28
171 173 3.945285 GGTCCCAAGCTTCAAAATATCGA 59.055 43.478 0.00 0.00 0.00 3.59
202 204 0.391130 TTCCCTCGATGGCAAGTTCG 60.391 55.000 1.18 2.67 36.72 3.95
203 205 2.044123 ATTCCCTCGATGGCAAGTTC 57.956 50.000 1.18 0.00 0.00 3.01
292 294 4.997395 TGTCAAGAGAAATCAAGTAGTGGC 59.003 41.667 0.00 0.00 0.00 5.01
293 295 5.119279 CGTGTCAAGAGAAATCAAGTAGTGG 59.881 44.000 0.00 0.00 0.00 4.00
299 301 3.666374 GCTGCGTGTCAAGAGAAATCAAG 60.666 47.826 0.00 0.00 0.00 3.02
316 318 0.320247 GAGGAGGTGGATATGCTGCG 60.320 60.000 0.00 0.00 0.00 5.18
322 324 3.051032 TCTTTCCCAGAGGAGGTGGATAT 60.051 47.826 0.00 0.00 45.19 1.63
323 325 2.317900 TCTTTCCCAGAGGAGGTGGATA 59.682 50.000 0.00 0.00 45.19 2.59
352 354 1.436195 TTGGACAGCACAACGTCAGC 61.436 55.000 0.00 0.00 33.66 4.26
387 389 0.452987 CTTGATGGTGGTTGATGGCG 59.547 55.000 0.00 0.00 0.00 5.69
410 412 1.113788 AAAAGTGCAGGCTCAAGCAA 58.886 45.000 4.13 0.00 43.20 3.91
414 416 2.057137 AGTCAAAAGTGCAGGCTCAA 57.943 45.000 0.00 0.00 0.00 3.02
415 417 2.057137 AAGTCAAAAGTGCAGGCTCA 57.943 45.000 0.00 0.00 0.00 4.26
424 426 6.767902 TGAAACATCAGAGCTAAGTCAAAAGT 59.232 34.615 0.00 0.00 0.00 2.66
459 461 3.319405 TCCGAGGCTAGAAGCAGATTAAG 59.681 47.826 0.00 0.00 44.75 1.85
465 467 1.681538 TAGTCCGAGGCTAGAAGCAG 58.318 55.000 0.00 0.00 44.75 4.24
498 500 7.707035 GTCAAATACAGAGTCGGAACAGATAAT 59.293 37.037 0.00 0.00 0.00 1.28
507 509 3.698289 AGGAGTCAAATACAGAGTCGGA 58.302 45.455 0.00 0.00 36.52 4.55
508 510 5.067936 ACATAGGAGTCAAATACAGAGTCGG 59.932 44.000 0.00 0.00 36.52 4.79
514 516 6.038825 AGAGACGACATAGGAGTCAAATACAG 59.961 42.308 9.51 0.00 38.43 2.74
525 527 5.854010 ATAAAAGCAGAGACGACATAGGA 57.146 39.130 0.00 0.00 0.00 2.94
555 557 1.339097 AGGGACGCTCGGCTTTATAT 58.661 50.000 0.00 0.00 0.00 0.86
556 558 1.884579 CTAGGGACGCTCGGCTTTATA 59.115 52.381 0.00 0.00 0.00 0.98
557 559 0.674534 CTAGGGACGCTCGGCTTTAT 59.325 55.000 0.00 0.00 0.00 1.40
558 560 2.012902 GCTAGGGACGCTCGGCTTTA 62.013 60.000 0.00 0.00 0.00 1.85
559 561 2.893398 CTAGGGACGCTCGGCTTT 59.107 61.111 0.00 0.00 0.00 3.51
560 562 3.839432 GCTAGGGACGCTCGGCTT 61.839 66.667 0.00 0.00 0.00 4.35
562 564 4.874977 GTGCTAGGGACGCTCGGC 62.875 72.222 0.00 2.98 0.00 5.54
563 565 4.208686 GGTGCTAGGGACGCTCGG 62.209 72.222 0.00 0.00 0.00 4.63
564 566 2.227089 AAAGGTGCTAGGGACGCTCG 62.227 60.000 0.00 0.00 0.00 5.03
565 567 0.036294 AAAAGGTGCTAGGGACGCTC 60.036 55.000 0.00 0.00 0.00 5.03
566 568 0.036294 GAAAAGGTGCTAGGGACGCT 60.036 55.000 0.00 0.00 0.00 5.07
567 569 0.036294 AGAAAAGGTGCTAGGGACGC 60.036 55.000 0.00 0.00 0.00 5.19
568 570 1.550976 AGAGAAAAGGTGCTAGGGACG 59.449 52.381 0.00 0.00 0.00 4.79
569 571 4.820894 TTAGAGAAAAGGTGCTAGGGAC 57.179 45.455 0.00 0.00 0.00 4.46
570 572 5.836024 TTTTAGAGAAAAGGTGCTAGGGA 57.164 39.130 0.00 0.00 30.89 4.20
590 592 6.429385 ACCATGTGTGTTTGAACATTGTTTTT 59.571 30.769 3.08 0.00 41.59 1.94
591 593 5.936956 ACCATGTGTGTTTGAACATTGTTTT 59.063 32.000 3.08 0.00 41.59 2.43
592 594 5.486526 ACCATGTGTGTTTGAACATTGTTT 58.513 33.333 3.08 0.00 41.59 2.83
593 595 5.083533 ACCATGTGTGTTTGAACATTGTT 57.916 34.783 0.63 0.63 41.59 2.83
594 596 4.734398 ACCATGTGTGTTTGAACATTGT 57.266 36.364 0.00 0.00 41.59 2.71
595 597 8.809159 TTTATACCATGTGTGTTTGAACATTG 57.191 30.769 0.00 0.00 41.59 2.82
596 598 9.995003 ATTTTATACCATGTGTGTTTGAACATT 57.005 25.926 0.00 0.00 41.59 2.71
597 599 9.638239 GATTTTATACCATGTGTGTTTGAACAT 57.362 29.630 0.00 0.00 41.59 2.71
598 600 8.085296 GGATTTTATACCATGTGTGTTTGAACA 58.915 33.333 0.00 0.00 36.38 3.18
599 601 7.272515 CGGATTTTATACCATGTGTGTTTGAAC 59.727 37.037 0.00 0.00 0.00 3.18
600 602 7.309177 CGGATTTTATACCATGTGTGTTTGAA 58.691 34.615 0.00 0.00 0.00 2.69
601 603 6.127869 CCGGATTTTATACCATGTGTGTTTGA 60.128 38.462 0.00 0.00 0.00 2.69
602 604 6.033341 CCGGATTTTATACCATGTGTGTTTG 58.967 40.000 0.00 0.00 0.00 2.93
603 605 5.712917 ACCGGATTTTATACCATGTGTGTTT 59.287 36.000 9.46 0.00 0.00 2.83
604 606 5.258051 ACCGGATTTTATACCATGTGTGTT 58.742 37.500 9.46 0.00 0.00 3.32
605 607 4.850680 ACCGGATTTTATACCATGTGTGT 58.149 39.130 9.46 0.00 0.00 3.72
606 608 5.355630 TGAACCGGATTTTATACCATGTGTG 59.644 40.000 9.46 0.00 0.00 3.82
607 609 5.502079 TGAACCGGATTTTATACCATGTGT 58.498 37.500 9.46 0.00 0.00 3.72
608 610 6.039270 ACATGAACCGGATTTTATACCATGTG 59.961 38.462 9.46 0.00 40.06 3.21
609 611 6.039270 CACATGAACCGGATTTTATACCATGT 59.961 38.462 9.46 7.82 41.59 3.21
610 612 6.039270 ACACATGAACCGGATTTTATACCATG 59.961 38.462 9.46 7.12 36.08 3.66
611 613 6.126409 ACACATGAACCGGATTTTATACCAT 58.874 36.000 9.46 0.00 0.00 3.55
612 614 5.502079 ACACATGAACCGGATTTTATACCA 58.498 37.500 9.46 0.00 0.00 3.25
613 615 6.445357 AACACATGAACCGGATTTTATACC 57.555 37.500 9.46 0.00 0.00 2.73
614 616 6.252655 GCAAACACATGAACCGGATTTTATAC 59.747 38.462 9.46 0.00 0.00 1.47
615 617 6.151985 AGCAAACACATGAACCGGATTTTATA 59.848 34.615 9.46 0.00 0.00 0.98
616 618 5.047377 AGCAAACACATGAACCGGATTTTAT 60.047 36.000 9.46 0.00 0.00 1.40
617 619 4.279671 AGCAAACACATGAACCGGATTTTA 59.720 37.500 9.46 0.00 0.00 1.52
618 620 3.069443 AGCAAACACATGAACCGGATTTT 59.931 39.130 9.46 0.00 0.00 1.82
619 621 2.627699 AGCAAACACATGAACCGGATTT 59.372 40.909 9.46 0.00 0.00 2.17
620 622 2.228822 GAGCAAACACATGAACCGGATT 59.771 45.455 9.46 0.00 0.00 3.01
621 623 1.812571 GAGCAAACACATGAACCGGAT 59.187 47.619 9.46 0.00 0.00 4.18
622 624 1.234821 GAGCAAACACATGAACCGGA 58.765 50.000 9.46 0.00 0.00 5.14
623 625 0.950836 TGAGCAAACACATGAACCGG 59.049 50.000 0.00 0.00 0.00 5.28
624 626 2.725759 CGATGAGCAAACACATGAACCG 60.726 50.000 0.00 0.00 0.00 4.44
625 627 2.414559 CCGATGAGCAAACACATGAACC 60.415 50.000 0.00 0.00 0.00 3.62
626 628 2.226437 ACCGATGAGCAAACACATGAAC 59.774 45.455 0.00 0.00 0.00 3.18
627 629 2.226200 CACCGATGAGCAAACACATGAA 59.774 45.455 0.00 0.00 0.00 2.57
628 630 1.805943 CACCGATGAGCAAACACATGA 59.194 47.619 0.00 0.00 0.00 3.07
629 631 1.805943 TCACCGATGAGCAAACACATG 59.194 47.619 0.00 0.00 0.00 3.21
630 632 2.183478 TCACCGATGAGCAAACACAT 57.817 45.000 0.00 0.00 0.00 3.21
631 633 2.183478 ATCACCGATGAGCAAACACA 57.817 45.000 0.00 0.00 38.57 3.72
632 634 3.262420 AGTATCACCGATGAGCAAACAC 58.738 45.455 0.00 0.00 38.57 3.32
633 635 3.610040 AGTATCACCGATGAGCAAACA 57.390 42.857 0.00 0.00 38.57 2.83
634 636 4.933330 TCTAGTATCACCGATGAGCAAAC 58.067 43.478 0.00 0.00 38.57 2.93
635 637 5.791336 ATCTAGTATCACCGATGAGCAAA 57.209 39.130 0.00 0.00 38.57 3.68
636 638 6.264518 TGTTATCTAGTATCACCGATGAGCAA 59.735 38.462 0.00 0.00 38.57 3.91
637 639 5.768164 TGTTATCTAGTATCACCGATGAGCA 59.232 40.000 0.00 0.00 38.57 4.26
638 640 6.255596 TGTTATCTAGTATCACCGATGAGC 57.744 41.667 0.00 0.00 38.57 4.26
639 641 7.757173 CCATTGTTATCTAGTATCACCGATGAG 59.243 40.741 0.00 0.00 38.57 2.90
640 642 7.602753 CCATTGTTATCTAGTATCACCGATGA 58.397 38.462 0.00 0.00 39.83 2.92
641 643 6.311445 GCCATTGTTATCTAGTATCACCGATG 59.689 42.308 0.00 0.00 0.00 3.84
642 644 6.398918 GCCATTGTTATCTAGTATCACCGAT 58.601 40.000 0.00 0.00 0.00 4.18
643 645 5.564063 CGCCATTGTTATCTAGTATCACCGA 60.564 44.000 0.00 0.00 0.00 4.69
644 646 4.621460 CGCCATTGTTATCTAGTATCACCG 59.379 45.833 0.00 0.00 0.00 4.94
645 647 5.405571 CACGCCATTGTTATCTAGTATCACC 59.594 44.000 0.00 0.00 0.00 4.02
646 648 6.213677 TCACGCCATTGTTATCTAGTATCAC 58.786 40.000 0.00 0.00 0.00 3.06
647 649 6.399639 TCACGCCATTGTTATCTAGTATCA 57.600 37.500 0.00 0.00 0.00 2.15
648 650 7.598869 TCAATCACGCCATTGTTATCTAGTATC 59.401 37.037 6.77 0.00 35.56 2.24
649 651 7.441836 TCAATCACGCCATTGTTATCTAGTAT 58.558 34.615 6.77 0.00 35.56 2.12
650 652 6.811954 TCAATCACGCCATTGTTATCTAGTA 58.188 36.000 6.77 0.00 35.56 1.82
651 653 5.670485 TCAATCACGCCATTGTTATCTAGT 58.330 37.500 6.77 0.00 35.56 2.57
652 654 6.479990 TCTTCAATCACGCCATTGTTATCTAG 59.520 38.462 6.77 0.00 35.56 2.43
653 655 6.345298 TCTTCAATCACGCCATTGTTATCTA 58.655 36.000 6.77 0.00 35.56 1.98
654 656 5.185454 TCTTCAATCACGCCATTGTTATCT 58.815 37.500 6.77 0.00 35.56 1.98
655 657 5.294306 TCTCTTCAATCACGCCATTGTTATC 59.706 40.000 6.77 0.00 35.56 1.75
656 658 5.185454 TCTCTTCAATCACGCCATTGTTAT 58.815 37.500 6.77 0.00 35.56 1.89
657 659 4.574892 TCTCTTCAATCACGCCATTGTTA 58.425 39.130 6.77 0.00 35.56 2.41
658 660 3.411446 TCTCTTCAATCACGCCATTGTT 58.589 40.909 6.77 0.00 35.56 2.83
659 661 3.057969 TCTCTTCAATCACGCCATTGT 57.942 42.857 6.77 0.00 35.56 2.71
660 662 4.627611 ATTCTCTTCAATCACGCCATTG 57.372 40.909 1.29 1.29 35.39 2.82
661 663 5.674525 TCTATTCTCTTCAATCACGCCATT 58.325 37.500 0.00 0.00 0.00 3.16
662 664 5.282055 TCTATTCTCTTCAATCACGCCAT 57.718 39.130 0.00 0.00 0.00 4.40
663 665 4.736126 TCTATTCTCTTCAATCACGCCA 57.264 40.909 0.00 0.00 0.00 5.69
664 666 4.384247 CGATCTATTCTCTTCAATCACGCC 59.616 45.833 0.00 0.00 0.00 5.68
665 667 4.384247 CCGATCTATTCTCTTCAATCACGC 59.616 45.833 0.00 0.00 0.00 5.34
666 668 5.763088 TCCGATCTATTCTCTTCAATCACG 58.237 41.667 0.00 0.00 0.00 4.35
667 669 7.206687 ACTTCCGATCTATTCTCTTCAATCAC 58.793 38.462 0.00 0.00 0.00 3.06
668 670 7.353414 ACTTCCGATCTATTCTCTTCAATCA 57.647 36.000 0.00 0.00 0.00 2.57
669 671 8.655651 AAACTTCCGATCTATTCTCTTCAATC 57.344 34.615 0.00 0.00 0.00 2.67
670 672 9.103861 GAAAACTTCCGATCTATTCTCTTCAAT 57.896 33.333 0.00 0.00 0.00 2.57
671 673 8.314751 AGAAAACTTCCGATCTATTCTCTTCAA 58.685 33.333 0.00 0.00 0.00 2.69
672 674 7.841956 AGAAAACTTCCGATCTATTCTCTTCA 58.158 34.615 0.00 0.00 0.00 3.02
673 675 7.436970 GGAGAAAACTTCCGATCTATTCTCTTC 59.563 40.741 11.14 0.00 40.52 2.87
674 676 7.269316 GGAGAAAACTTCCGATCTATTCTCTT 58.731 38.462 11.14 0.00 40.52 2.85
675 677 6.811954 GGAGAAAACTTCCGATCTATTCTCT 58.188 40.000 11.14 0.00 40.52 3.10
709 711 1.417372 CGCATCACGCCATTGTTTTT 58.583 45.000 0.00 0.00 37.30 1.94
710 712 3.105514 CGCATCACGCCATTGTTTT 57.894 47.368 0.00 0.00 37.30 2.43
711 713 4.866088 CGCATCACGCCATTGTTT 57.134 50.000 0.00 0.00 37.30 2.83
727 729 3.418913 TCGATTGGTTGCACGGCG 61.419 61.111 4.80 4.80 0.00 6.46
728 730 1.922135 ATGTCGATTGGTTGCACGGC 61.922 55.000 0.00 0.00 0.00 5.68
729 731 0.179192 CATGTCGATTGGTTGCACGG 60.179 55.000 0.00 0.00 0.00 4.94
730 732 0.795698 TCATGTCGATTGGTTGCACG 59.204 50.000 0.00 0.00 0.00 5.34
731 733 3.544048 CGTATCATGTCGATTGGTTGCAC 60.544 47.826 0.00 0.00 35.39 4.57
732 734 2.607180 CGTATCATGTCGATTGGTTGCA 59.393 45.455 0.00 0.00 35.39 4.08
733 735 2.607635 ACGTATCATGTCGATTGGTTGC 59.392 45.455 12.57 0.00 35.39 4.17
734 736 4.494035 CCAACGTATCATGTCGATTGGTTG 60.494 45.833 19.23 13.92 41.29 3.77
735 737 3.621268 CCAACGTATCATGTCGATTGGTT 59.379 43.478 19.23 6.92 35.61 3.67
736 738 3.194861 CCAACGTATCATGTCGATTGGT 58.805 45.455 19.23 0.00 35.61 3.67
737 739 3.194861 ACCAACGTATCATGTCGATTGG 58.805 45.455 22.05 22.05 40.39 3.16
738 740 3.862845 TGACCAACGTATCATGTCGATTG 59.137 43.478 12.57 11.86 35.39 2.67
739 741 4.118093 TGACCAACGTATCATGTCGATT 57.882 40.909 12.57 3.65 35.39 3.34
740 742 3.793797 TGACCAACGTATCATGTCGAT 57.206 42.857 12.57 1.18 38.21 3.59
741 743 3.793797 ATGACCAACGTATCATGTCGA 57.206 42.857 8.60 0.00 34.23 4.20
742 744 5.959652 TTTATGACCAACGTATCATGTCG 57.040 39.130 16.21 0.00 36.26 4.35
743 745 7.303634 AGTTTTATGACCAACGTATCATGTC 57.696 36.000 16.21 7.66 36.26 3.06
744 746 8.780846 TTAGTTTTATGACCAACGTATCATGT 57.219 30.769 16.21 0.00 36.26 3.21
745 747 9.485591 GTTTAGTTTTATGACCAACGTATCATG 57.514 33.333 16.21 0.00 36.26 3.07
746 748 8.671028 GGTTTAGTTTTATGACCAACGTATCAT 58.329 33.333 12.78 12.78 38.99 2.45
747 749 7.879160 AGGTTTAGTTTTATGACCAACGTATCA 59.121 33.333 0.00 0.00 32.81 2.15
748 750 8.260270 AGGTTTAGTTTTATGACCAACGTATC 57.740 34.615 0.00 0.00 32.81 2.24
749 751 9.723601 TTAGGTTTAGTTTTATGACCAACGTAT 57.276 29.630 0.00 0.00 32.81 3.06
750 752 9.553064 TTTAGGTTTAGTTTTATGACCAACGTA 57.447 29.630 0.00 0.00 32.81 3.57
751 753 8.344831 GTTTAGGTTTAGTTTTATGACCAACGT 58.655 33.333 0.00 0.00 32.81 3.99
752 754 7.804600 GGTTTAGGTTTAGTTTTATGACCAACG 59.195 37.037 0.00 0.00 32.81 4.10
753 755 8.853126 AGGTTTAGGTTTAGTTTTATGACCAAC 58.147 33.333 0.00 0.00 32.81 3.77
754 756 8.852135 CAGGTTTAGGTTTAGTTTTATGACCAA 58.148 33.333 0.00 0.00 32.81 3.67
755 757 7.449086 CCAGGTTTAGGTTTAGTTTTATGACCA 59.551 37.037 0.00 0.00 32.81 4.02
756 758 7.576287 GCCAGGTTTAGGTTTAGTTTTATGACC 60.576 40.741 0.00 0.00 0.00 4.02
757 759 7.176165 AGCCAGGTTTAGGTTTAGTTTTATGAC 59.824 37.037 0.00 0.00 0.00 3.06
758 760 7.235804 AGCCAGGTTTAGGTTTAGTTTTATGA 58.764 34.615 0.00 0.00 0.00 2.15
759 761 7.462571 AGCCAGGTTTAGGTTTAGTTTTATG 57.537 36.000 0.00 0.00 0.00 1.90
760 762 7.507956 ACAAGCCAGGTTTAGGTTTAGTTTTAT 59.492 33.333 0.00 0.00 0.00 1.40
761 763 6.834969 ACAAGCCAGGTTTAGGTTTAGTTTTA 59.165 34.615 0.00 0.00 0.00 1.52
762 764 5.659525 ACAAGCCAGGTTTAGGTTTAGTTTT 59.340 36.000 0.00 0.00 0.00 2.43
763 765 5.205821 ACAAGCCAGGTTTAGGTTTAGTTT 58.794 37.500 0.00 0.00 0.00 2.66
764 766 4.800023 ACAAGCCAGGTTTAGGTTTAGTT 58.200 39.130 0.00 0.00 0.00 2.24
765 767 4.141344 TGACAAGCCAGGTTTAGGTTTAGT 60.141 41.667 0.00 0.00 0.00 2.24
766 768 4.394729 TGACAAGCCAGGTTTAGGTTTAG 58.605 43.478 0.00 0.00 0.00 1.85
767 769 4.440826 TGACAAGCCAGGTTTAGGTTTA 57.559 40.909 0.00 0.00 0.00 2.01
768 770 3.306472 TGACAAGCCAGGTTTAGGTTT 57.694 42.857 0.00 0.00 0.00 3.27
769 771 3.306472 TTGACAAGCCAGGTTTAGGTT 57.694 42.857 0.00 0.00 0.00 3.50
770 772 3.157087 CATTGACAAGCCAGGTTTAGGT 58.843 45.455 0.00 0.00 0.00 3.08
771 773 3.191371 GTCATTGACAAGCCAGGTTTAGG 59.809 47.826 11.93 0.00 32.09 2.69
772 774 3.820467 TGTCATTGACAAGCCAGGTTTAG 59.180 43.478 16.95 0.00 39.78 1.85
773 775 3.568007 GTGTCATTGACAAGCCAGGTTTA 59.432 43.478 20.57 0.00 44.49 2.01
774 776 2.362077 GTGTCATTGACAAGCCAGGTTT 59.638 45.455 20.57 0.00 44.49 3.27
775 777 1.956477 GTGTCATTGACAAGCCAGGTT 59.044 47.619 20.57 0.00 44.49 3.50
776 778 1.609208 GTGTCATTGACAAGCCAGGT 58.391 50.000 20.57 0.00 44.49 4.00
777 779 0.883833 GGTGTCATTGACAAGCCAGG 59.116 55.000 20.57 0.00 44.49 4.45
778 780 0.518636 CGGTGTCATTGACAAGCCAG 59.481 55.000 20.57 11.06 44.49 4.85
779 781 1.514678 GCGGTGTCATTGACAAGCCA 61.515 55.000 25.74 4.09 44.49 4.75
780 782 1.210155 GCGGTGTCATTGACAAGCC 59.790 57.895 25.74 20.26 44.49 4.35
781 783 0.310543 TTGCGGTGTCATTGACAAGC 59.689 50.000 27.72 27.72 44.49 4.01
782 784 2.772568 TTTGCGGTGTCATTGACAAG 57.227 45.000 20.57 17.50 44.49 3.16
783 785 2.620585 TGATTTGCGGTGTCATTGACAA 59.379 40.909 20.57 5.13 44.49 3.18
784 786 2.225467 TGATTTGCGGTGTCATTGACA 58.775 42.857 15.41 15.41 40.50 3.58
785 787 2.855180 CTGATTTGCGGTGTCATTGAC 58.145 47.619 9.93 9.93 0.00 3.18
786 788 1.199789 GCTGATTTGCGGTGTCATTGA 59.800 47.619 0.00 0.00 0.00 2.57
787 789 1.200716 AGCTGATTTGCGGTGTCATTG 59.799 47.619 0.00 0.00 38.13 2.82
788 790 1.470098 GAGCTGATTTGCGGTGTCATT 59.530 47.619 0.00 0.00 38.13 2.57
789 791 1.089920 GAGCTGATTTGCGGTGTCAT 58.910 50.000 0.00 0.00 38.13 3.06
790 792 1.291184 CGAGCTGATTTGCGGTGTCA 61.291 55.000 0.00 0.00 38.13 3.58
791 793 1.421485 CGAGCTGATTTGCGGTGTC 59.579 57.895 0.00 0.00 38.13 3.67
792 794 2.034879 CCGAGCTGATTTGCGGTGT 61.035 57.895 0.00 0.00 38.99 4.16
793 795 2.787249 CCGAGCTGATTTGCGGTG 59.213 61.111 0.00 0.00 38.99 4.94
794 796 3.127533 GCCGAGCTGATTTGCGGT 61.128 61.111 10.55 0.00 45.22 5.68
795 797 2.817423 GAGCCGAGCTGATTTGCGG 61.817 63.158 4.98 4.98 46.14 5.69
796 798 1.364626 AAGAGCCGAGCTGATTTGCG 61.365 55.000 2.98 0.00 39.88 4.85
797 799 0.376502 GAAGAGCCGAGCTGATTTGC 59.623 55.000 2.98 0.00 39.88 3.68
798 800 1.932511 GAGAAGAGCCGAGCTGATTTG 59.067 52.381 2.98 0.00 39.88 2.32
799 801 1.552337 TGAGAAGAGCCGAGCTGATTT 59.448 47.619 2.98 0.00 39.88 2.17
800 802 1.134848 GTGAGAAGAGCCGAGCTGATT 60.135 52.381 2.98 0.00 39.88 2.57
801 803 0.459489 GTGAGAAGAGCCGAGCTGAT 59.541 55.000 2.98 0.00 39.88 2.90
802 804 0.610509 AGTGAGAAGAGCCGAGCTGA 60.611 55.000 2.98 0.00 39.88 4.26
803 805 0.179140 GAGTGAGAAGAGCCGAGCTG 60.179 60.000 2.98 0.00 39.88 4.24
804 806 0.610509 TGAGTGAGAAGAGCCGAGCT 60.611 55.000 0.00 0.00 43.88 4.09
805 807 0.457681 GTGAGTGAGAAGAGCCGAGC 60.458 60.000 0.00 0.00 0.00 5.03
806 808 1.132262 GAGTGAGTGAGAAGAGCCGAG 59.868 57.143 0.00 0.00 0.00 4.63
807 809 1.169577 GAGTGAGTGAGAAGAGCCGA 58.830 55.000 0.00 0.00 0.00 5.54
808 810 0.172352 GGAGTGAGTGAGAAGAGCCG 59.828 60.000 0.00 0.00 0.00 5.52
809 811 1.261480 TGGAGTGAGTGAGAAGAGCC 58.739 55.000 0.00 0.00 0.00 4.70
810 812 2.611722 GGTTGGAGTGAGTGAGAAGAGC 60.612 54.545 0.00 0.00 0.00 4.09
811 813 2.630098 TGGTTGGAGTGAGTGAGAAGAG 59.370 50.000 0.00 0.00 0.00 2.85
812 814 2.365617 GTGGTTGGAGTGAGTGAGAAGA 59.634 50.000 0.00 0.00 0.00 2.87
813 815 2.366916 AGTGGTTGGAGTGAGTGAGAAG 59.633 50.000 0.00 0.00 0.00 2.85
814 816 2.365617 GAGTGGTTGGAGTGAGTGAGAA 59.634 50.000 0.00 0.00 0.00 2.87
815 817 1.964223 GAGTGGTTGGAGTGAGTGAGA 59.036 52.381 0.00 0.00 0.00 3.27
816 818 1.001406 GGAGTGGTTGGAGTGAGTGAG 59.999 57.143 0.00 0.00 0.00 3.51
817 819 1.048601 GGAGTGGTTGGAGTGAGTGA 58.951 55.000 0.00 0.00 0.00 3.41
818 820 0.319900 CGGAGTGGTTGGAGTGAGTG 60.320 60.000 0.00 0.00 0.00 3.51
819 821 1.472662 CCGGAGTGGTTGGAGTGAGT 61.473 60.000 0.00 0.00 0.00 3.41
820 822 1.293498 CCGGAGTGGTTGGAGTGAG 59.707 63.158 0.00 0.00 0.00 3.51
821 823 3.466881 CCGGAGTGGTTGGAGTGA 58.533 61.111 0.00 0.00 0.00 3.41
830 832 2.833631 ACTTAGTCAAACCGGAGTGG 57.166 50.000 9.46 0.00 46.41 4.00
831 833 3.303791 GCAAACTTAGTCAAACCGGAGTG 60.304 47.826 9.46 5.48 0.00 3.51
832 834 2.876550 GCAAACTTAGTCAAACCGGAGT 59.123 45.455 9.46 0.00 0.00 3.85
833 835 2.225727 GGCAAACTTAGTCAAACCGGAG 59.774 50.000 9.46 0.00 0.00 4.63
834 836 2.223745 GGCAAACTTAGTCAAACCGGA 58.776 47.619 9.46 0.00 0.00 5.14
835 837 1.950909 TGGCAAACTTAGTCAAACCGG 59.049 47.619 0.00 0.00 0.00 5.28
836 838 3.701532 TTGGCAAACTTAGTCAAACCG 57.298 42.857 0.00 0.00 0.00 4.44
837 839 4.556233 GGATTGGCAAACTTAGTCAAACC 58.444 43.478 3.01 0.00 0.00 3.27
845 847 1.614850 GGACCCGGATTGGCAAACTTA 60.615 52.381 0.73 0.00 35.87 2.24
874 877 0.393808 CATCCAGTTGTAACCCCGGG 60.394 60.000 15.80 15.80 0.00 5.73
883 886 2.034066 CCGGCACCATCCAGTTGT 59.966 61.111 0.00 0.00 0.00 3.32
899 902 6.790825 CGTTTTGTCTAAAATCTTTCTCGACC 59.209 38.462 0.00 0.00 38.01 4.79
913 919 3.220447 CGAGCCCCGTTTTGTCTAA 57.780 52.632 0.00 0.00 0.00 2.10
937 943 3.285484 GACTGGTCCCGATCAACTAGTA 58.715 50.000 0.00 0.00 37.34 1.82
1201 1207 1.079503 GCGCGAAGGATCTTCACTTT 58.920 50.000 12.10 0.00 0.00 2.66
1211 1217 2.884087 GATCAACCTCGCGCGAAGGA 62.884 60.000 37.37 29.08 0.00 3.36
1250 1256 2.896854 CATGCATCCACCGGACCG 60.897 66.667 9.46 6.99 32.98 4.79
1369 1380 2.760374 AGAAGAGAACAACAAGAGCCG 58.240 47.619 0.00 0.00 0.00 5.52
1401 1412 2.473664 AAACACGAGACGGAGCGAGG 62.474 60.000 0.00 0.00 0.00 4.63
1427 1438 3.496870 GGGCCAGAAAGAGAAAAGAGACA 60.497 47.826 4.39 0.00 0.00 3.41
1428 1439 3.078097 GGGCCAGAAAGAGAAAAGAGAC 58.922 50.000 4.39 0.00 0.00 3.36
1464 1475 3.597868 TCATGGGAGGAAGAAAAGGGAAT 59.402 43.478 0.00 0.00 0.00 3.01
1761 1774 9.813080 GCGAAAGGCTTAAGATAAGTAATAATG 57.187 33.333 6.67 0.00 39.11 1.90
1837 1855 3.446873 TGCCAAAACCATCGATTTAGCAT 59.553 39.130 0.00 0.00 0.00 3.79
1838 1856 2.822561 TGCCAAAACCATCGATTTAGCA 59.177 40.909 0.00 0.00 0.00 3.49
1908 1926 3.120511 GGCAGATTGAACTTCGTCAGAAC 60.121 47.826 0.00 0.00 32.15 3.01
2179 2199 5.354234 CACAAAGTCCAAAACACAGTAGTCT 59.646 40.000 0.00 0.00 0.00 3.24
2184 2204 4.079253 ACTCACAAAGTCCAAAACACAGT 58.921 39.130 0.00 0.00 30.02 3.55
2212 2232 1.425412 CAATGTTTCTTGCAGCCAGC 58.575 50.000 0.00 0.00 45.96 4.85
2269 2289 2.557924 GTCAAATGTTGCACATCCCTCA 59.442 45.455 0.00 0.00 37.97 3.86
2281 2301 1.697432 TCGACAGGGAGGTCAAATGTT 59.303 47.619 0.00 0.00 37.66 2.71
2317 2337 0.820226 GATGGGCCAAAGCTCCTTTC 59.180 55.000 11.89 0.00 39.53 2.62
2402 2422 6.209589 TGCTCCAGAATACGAAAGCTATCTAT 59.790 38.462 0.00 0.00 0.00 1.98
2464 2579 2.283298 CTGGGAACTCCATCAATGTCG 58.717 52.381 0.00 0.00 46.01 4.35
2473 2588 0.547471 TCTGGATGCTGGGAACTCCA 60.547 55.000 0.00 0.00 44.79 3.86
2524 2639 9.256228 TCTATAGCTATAAAAACTCCGGATCAT 57.744 33.333 14.30 0.00 0.00 2.45
2672 2932 4.898320 TGTGTCTATGCAGTGACTTTCAT 58.102 39.130 18.52 3.17 34.57 2.57
2723 2983 1.083489 TTAATGAGCAAGGGAACGCG 58.917 50.000 3.53 3.53 0.00 6.01
2763 3023 6.381481 TGCATCATTATGAAAGGTTAGCTG 57.619 37.500 0.00 0.00 34.84 4.24
2835 3095 6.968131 TCAAGAATTCCGTCAACTATCTTG 57.032 37.500 0.65 6.33 42.10 3.02
2891 3151 1.376037 CGGTCCTTCCAGCAAGACC 60.376 63.158 0.00 0.00 33.29 3.85
2993 3350 3.510719 CGGCATAAAAACACAGATTGGG 58.489 45.455 0.00 0.00 0.00 4.12
3008 3365 2.226602 TATGCAAACTACGCGGCATA 57.773 45.000 17.65 17.65 44.52 3.14
3009 3366 3.903783 ATGCAAACTACGCGGCAT 58.096 50.000 12.47 11.99 41.81 4.40
3024 3381 4.763793 CAGCCTTGGAACCCAGAATATATG 59.236 45.833 0.00 0.00 33.81 1.78
3045 3402 4.148871 CGGTTCATATTCTATGACGCACAG 59.851 45.833 0.00 0.00 0.00 3.66
3051 3408 7.201478 GCAGCTTATCGGTTCATATTCTATGAC 60.201 40.741 0.00 0.00 0.00 3.06
3068 3425 4.066490 AGCAATCTCATCAGCAGCTTATC 58.934 43.478 0.00 0.00 0.00 1.75
3102 3459 0.831307 GAGGCTACCCGTTCCAATCT 59.169 55.000 0.00 0.00 35.76 2.40
3118 3475 2.037367 TGAGGTCTGACGGGGAGG 59.963 66.667 1.07 0.00 0.00 4.30
3194 4321 1.133606 ACCATGTGGACCTTTTTCCGT 60.134 47.619 5.96 0.00 38.69 4.69
3205 4348 3.389656 TGTGAACTTACAGACCATGTGGA 59.610 43.478 5.96 0.00 43.80 4.02
3295 4439 3.865745 CAGCAATATAGGTATAGGCACGC 59.134 47.826 0.00 0.00 0.00 5.34
3298 4442 4.623886 GCAGCAGCAATATAGGTATAGGCA 60.624 45.833 0.00 0.00 41.58 4.75
3299 4443 3.873952 GCAGCAGCAATATAGGTATAGGC 59.126 47.826 0.00 0.00 41.58 3.93
3300 4444 5.350504 AGCAGCAGCAATATAGGTATAGG 57.649 43.478 3.17 0.00 45.49 2.57
3315 4527 2.746671 CTGTGGCAGGAGCAGCAG 60.747 66.667 0.00 0.00 44.61 4.24
3345 4557 9.967346 TCTATCTAATGAGGAAATAGTTGAACG 57.033 33.333 0.00 0.00 0.00 3.95
3384 4597 4.213270 TGTTTATGTTCGCCTGTCTTTCAG 59.787 41.667 0.00 0.00 43.27 3.02
3385 4598 4.130857 TGTTTATGTTCGCCTGTCTTTCA 58.869 39.130 0.00 0.00 0.00 2.69
3386 4599 4.742438 TGTTTATGTTCGCCTGTCTTTC 57.258 40.909 0.00 0.00 0.00 2.62
3387 4600 5.508200 TTTGTTTATGTTCGCCTGTCTTT 57.492 34.783 0.00 0.00 0.00 2.52
3393 4606 5.703592 TGAGTACATTTGTTTATGTTCGCCT 59.296 36.000 0.00 0.00 39.39 5.52
3406 4619 6.677781 ATTGACCCGTATTGAGTACATTTG 57.322 37.500 0.00 0.00 32.61 2.32
3474 4687 0.835941 GATGCATGGACTGACCTCCT 59.164 55.000 2.46 0.00 39.86 3.69
3475 4688 0.531532 CGATGCATGGACTGACCTCC 60.532 60.000 2.46 0.00 39.86 4.30
3476 4689 0.531532 CCGATGCATGGACTGACCTC 60.532 60.000 10.66 0.00 39.86 3.85
3625 4839 5.124617 GCAGCAAAAGCTAAAGAGGTAGAAT 59.875 40.000 0.00 0.00 31.56 2.40
3799 5013 0.036164 ACCATCAGCAGCACCGTTAA 59.964 50.000 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.