Multiple sequence alignment - TraesCS6D01G198300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G198300 chr6D 100.000 7531 0 0 1 7531 276148742 276141212 0.000000e+00 13908.0
1 TraesCS6D01G198300 chr6D 88.389 422 36 10 3932 4350 211670788 211671199 5.490000e-136 496.0
2 TraesCS6D01G198300 chr6D 100.000 127 0 0 7753 7879 276140990 276140864 1.320000e-57 235.0
3 TraesCS6D01G198300 chr6D 81.699 153 24 3 5987 6139 87365389 87365241 2.990000e-24 124.0
4 TraesCS6D01G198300 chr6B 95.848 3372 74 20 4095 7455 438102495 438099179 0.000000e+00 5391.0
5 TraesCS6D01G198300 chr6B 98.305 1593 25 2 1575 3166 438108988 438107397 0.000000e+00 2791.0
6 TraesCS6D01G198300 chr6B 91.952 1404 82 21 165 1547 438110475 438109082 0.000000e+00 1938.0
7 TraesCS6D01G198300 chr6B 98.529 408 6 0 3691 4098 438103323 438102916 0.000000e+00 721.0
8 TraesCS6D01G198300 chr6B 88.571 490 41 13 3865 4350 377933155 377933633 1.470000e-161 580.0
9 TraesCS6D01G198300 chr6B 95.902 244 8 1 3157 3398 438103589 438103346 2.060000e-105 394.0
10 TraesCS6D01G198300 chr6B 94.488 127 3 1 7753 7879 438099050 438098928 8.070000e-45 193.0
11 TraesCS6D01G198300 chr6B 100.000 51 0 0 7481 7531 438099179 438099129 2.340000e-15 95.3
12 TraesCS6D01G198300 chr6A 96.571 3179 82 17 4366 7531 399837037 399840201 0.000000e+00 5241.0
13 TraesCS6D01G198300 chr6A 94.854 3284 99 26 162 3395 399833046 399836309 0.000000e+00 5064.0
14 TraesCS6D01G198300 chr6A 96.328 708 20 2 3691 4398 399836335 399837036 0.000000e+00 1158.0
15 TraesCS6D01G198300 chr6A 88.985 463 37 12 3893 4350 294645236 294645689 1.920000e-155 560.0
16 TraesCS6D01G198300 chr6A 98.165 109 2 0 7753 7861 399840286 399840394 2.900000e-44 191.0
17 TraesCS6D01G198300 chr6A 79.024 205 32 8 5987 6185 105294581 105294382 6.420000e-26 130.0
18 TraesCS6D01G198300 chr6A 83.088 136 17 3 25 154 595654743 595654878 1.390000e-22 119.0
19 TraesCS6D01G198300 chr1B 91.304 621 37 13 6394 7010 169949662 169949055 0.000000e+00 832.0
20 TraesCS6D01G198300 chr1D 91.419 606 42 8 6408 7010 90553614 90553016 0.000000e+00 822.0
21 TraesCS6D01G198300 chr1D 96.610 295 8 1 3397 3691 372525996 372526288 9.190000e-134 488.0
22 TraesCS6D01G198300 chr5B 90.879 603 44 8 6410 7010 92203981 92203388 0.000000e+00 798.0
23 TraesCS6D01G198300 chr7A 89.723 613 49 10 6400 7010 54589891 54589291 0.000000e+00 771.0
24 TraesCS6D01G198300 chr7A 96.271 295 9 1 3397 3691 248333510 248333218 4.280000e-132 483.0
25 TraesCS6D01G198300 chr3B 89.109 606 45 12 6408 7010 62717131 62716544 0.000000e+00 734.0
26 TraesCS6D01G198300 chr3B 91.137 519 27 7 6394 6912 550786945 550787444 0.000000e+00 686.0
27 TraesCS6D01G198300 chr3B 90.104 192 17 2 6902 7093 774408563 774408752 1.700000e-61 248.0
28 TraesCS6D01G198300 chr3B 94.444 72 4 0 4594 4665 736670181 736670110 2.320000e-20 111.0
29 TraesCS6D01G198300 chr3A 88.510 557 45 13 6394 6948 638853800 638853261 0.000000e+00 656.0
30 TraesCS6D01G198300 chr3A 86.922 497 48 13 3865 4353 275289767 275289280 6.950000e-150 542.0
31 TraesCS6D01G198300 chr3A 81.463 205 28 6 5963 6161 416165450 416165650 8.180000e-35 159.0
32 TraesCS6D01G198300 chr3A 94.444 72 4 0 4594 4665 12465454 12465383 2.320000e-20 111.0
33 TraesCS6D01G198300 chr3A 94.444 72 4 0 4594 4665 416165374 416165445 2.320000e-20 111.0
34 TraesCS6D01G198300 chr2D 86.992 492 50 11 3865 4347 170616623 170617109 6.950000e-150 542.0
35 TraesCS6D01G198300 chr2D 85.947 491 55 11 3867 4349 172403754 172404238 5.450000e-141 512.0
36 TraesCS6D01G198300 chr2D 96.271 295 9 1 3397 3691 585641517 585641809 4.280000e-132 483.0
37 TraesCS6D01G198300 chr2D 83.333 120 18 2 25 143 538925929 538926047 8.360000e-20 110.0
38 TraesCS6D01G198300 chr7D 86.061 495 57 12 3865 4351 431921172 431921662 9.060000e-144 521.0
39 TraesCS6D01G198300 chr7D 96.296 297 6 3 3393 3686 607050103 607050397 4.280000e-132 483.0
40 TraesCS6D01G198300 chr7D 83.077 130 19 3 25 154 95128625 95128499 1.800000e-21 115.0
41 TraesCS6D01G198300 chr2A 86.151 491 54 11 3865 4347 179292625 179292141 1.170000e-142 518.0
42 TraesCS6D01G198300 chr2A 80.741 135 19 6 21 150 635522481 635522349 1.810000e-16 99.0
43 TraesCS6D01G198300 chr4D 97.288 295 6 1 3397 3691 486181410 486181702 4.250000e-137 499.0
44 TraesCS6D01G198300 chr4D 96.949 295 7 2 3397 3691 221433898 221433606 1.980000e-135 494.0
45 TraesCS6D01G198300 chr4D 100.000 28 0 0 1415 1442 16818409 16818382 1.400000e-02 52.8
46 TraesCS6D01G198300 chr3D 96.949 295 7 1 3397 3691 32905300 32905008 1.980000e-135 494.0
47 TraesCS6D01G198300 chr3D 85.246 122 15 3 25 143 21584039 21583918 1.070000e-23 122.0
48 TraesCS6D01G198300 chr3D 85.577 104 12 3 41 143 104274645 104274746 1.080000e-18 106.0
49 TraesCS6D01G198300 chr3D 90.385 52 5 0 5510 5561 505557790 505557739 1.420000e-07 69.4
50 TraesCS6D01G198300 chr4A 96.271 295 9 1 3397 3691 27552383 27552675 4.280000e-132 483.0
51 TraesCS6D01G198300 chr4A 100.000 28 0 0 1415 1442 583703416 583703443 1.400000e-02 52.8
52 TraesCS6D01G198300 chr2B 96.271 295 9 1 3397 3691 146779372 146779080 4.280000e-132 483.0
53 TraesCS6D01G198300 chr1A 79.070 516 75 14 5632 6128 537534724 537535225 2.740000e-84 324.0
54 TraesCS6D01G198300 chr7B 89.062 192 19 2 6902 7093 7014010 7014199 3.680000e-58 237.0
55 TraesCS6D01G198300 chr7B 94.444 72 4 0 4594 4665 327255199 327255128 2.320000e-20 111.0
56 TraesCS6D01G198300 chr5D 86.207 116 16 0 25 140 307359086 307358971 8.300000e-25 126.0
57 TraesCS6D01G198300 chr5D 84.874 119 18 0 25 143 371834419 371834537 3.860000e-23 121.0
58 TraesCS6D01G198300 chr5D 84.127 126 13 4 25 143 438716169 438716294 1.800000e-21 115.0
59 TraesCS6D01G198300 chrUn 94.444 72 4 0 4594 4665 479938297 479938226 2.320000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G198300 chr6D 276140864 276148742 7878 True 7071.500000 13908 100.0000 1 7879 2 chr6D.!!$R2 7878
1 TraesCS6D01G198300 chr6B 438098928 438110475 11547 True 1646.185714 5391 96.4320 165 7879 7 chr6B.!!$R1 7714
2 TraesCS6D01G198300 chr6A 399833046 399840394 7348 False 2913.500000 5241 96.4795 162 7861 4 chr6A.!!$F3 7699
3 TraesCS6D01G198300 chr1B 169949055 169949662 607 True 832.000000 832 91.3040 6394 7010 1 chr1B.!!$R1 616
4 TraesCS6D01G198300 chr1D 90553016 90553614 598 True 822.000000 822 91.4190 6408 7010 1 chr1D.!!$R1 602
5 TraesCS6D01G198300 chr5B 92203388 92203981 593 True 798.000000 798 90.8790 6410 7010 1 chr5B.!!$R1 600
6 TraesCS6D01G198300 chr7A 54589291 54589891 600 True 771.000000 771 89.7230 6400 7010 1 chr7A.!!$R1 610
7 TraesCS6D01G198300 chr3B 62716544 62717131 587 True 734.000000 734 89.1090 6408 7010 1 chr3B.!!$R1 602
8 TraesCS6D01G198300 chr3A 638853261 638853800 539 True 656.000000 656 88.5100 6394 6948 1 chr3A.!!$R3 554
9 TraesCS6D01G198300 chr1A 537534724 537535225 501 False 324.000000 324 79.0700 5632 6128 1 chr1A.!!$F1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.038166 ATTTGAGCTCGGGCCAAGAA 59.962 50.000 2.00 0.00 39.73 2.52 F
150 151 0.179004 TTTGAGCTCGGGCCAAGAAA 60.179 50.000 2.00 0.00 39.73 2.52 F
158 159 0.609131 CGGGCCAAGAAACTCCACAT 60.609 55.000 4.39 0.00 0.00 3.21 F
851 873 1.115467 TCCTTCAGATCCGCTCTTCC 58.885 55.000 0.00 0.00 29.16 3.46 F
852 874 1.118838 CCTTCAGATCCGCTCTTCCT 58.881 55.000 0.00 0.00 29.16 3.36 F
2228 2332 1.604278 ACAGTCTCGAAAGCAAAAGGC 59.396 47.619 0.00 0.00 45.30 4.35 F
3403 7342 1.494721 AGGGACCTGCAAACTCTTTGA 59.505 47.619 0.00 0.00 43.26 2.69 F
3636 7575 0.186873 AGGGATCCAATGGACATGCC 59.813 55.000 15.23 4.48 32.98 4.40 F
4441 8835 0.036010 TTACAGCTGGCTCTTCAGGC 60.036 55.000 19.93 0.00 45.76 4.85 F
5204 9607 1.532868 AGCGAGCTTAAAGTTGCTGTG 59.467 47.619 0.00 0.00 39.91 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 1296 0.179250 CCTCACAATTGTTCGACGCG 60.179 55.000 8.77 3.53 0.00 6.01 R
1477 1500 2.115343 TACATGGTTTGCGCCATACA 57.885 45.000 4.18 0.00 46.71 2.29 R
1479 1502 2.924421 TGATACATGGTTTGCGCCATA 58.076 42.857 4.18 0.00 46.71 2.74 R
2228 2332 1.963515 CCAGAAGTGGTTTTTCCCCAG 59.036 52.381 0.00 0.00 39.30 4.45 R
2715 2820 4.685169 AGGATTGAAATACAACTGCACG 57.315 40.909 0.00 0.00 41.52 5.34 R
3618 7557 0.106066 TGGCATGTCCATTGGATCCC 60.106 55.000 9.90 7.65 40.72 3.85 R
4441 8835 1.002868 CCTCAACCCTGCTCTGTGG 60.003 63.158 0.00 0.00 0.00 4.17 R
4808 9209 5.088680 ACCATTTGTAAGAAATGCATGGG 57.911 39.130 0.00 0.00 36.56 4.00 R
5899 10310 2.223782 GCTTTGCACATGACAGGACAAA 60.224 45.455 0.00 10.81 0.00 2.83 R
7053 11489 3.305964 GCGCAGAGACGTATGCTTATTA 58.694 45.455 15.35 0.00 38.86 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.487576 TGGAAGTCGTGGCAACTTT 57.512 47.368 6.06 0.00 37.10 2.66
19 20 1.757682 TGGAAGTCGTGGCAACTTTT 58.242 45.000 6.06 0.00 37.10 2.27
20 21 2.096248 TGGAAGTCGTGGCAACTTTTT 58.904 42.857 6.06 0.00 37.10 1.94
47 48 5.849357 TTTCATGACAAATCATTGCAAGC 57.151 34.783 4.94 0.00 43.40 4.01
48 49 4.794278 TCATGACAAATCATTGCAAGCT 57.206 36.364 4.94 0.00 43.40 3.74
49 50 4.740268 TCATGACAAATCATTGCAAGCTC 58.260 39.130 4.94 0.00 43.40 4.09
50 51 4.461431 TCATGACAAATCATTGCAAGCTCT 59.539 37.500 4.94 0.00 43.40 4.09
51 52 4.859304 TGACAAATCATTGCAAGCTCTT 57.141 36.364 4.94 0.00 40.34 2.85
52 53 5.963176 TGACAAATCATTGCAAGCTCTTA 57.037 34.783 4.94 0.00 40.34 2.10
53 54 5.946298 TGACAAATCATTGCAAGCTCTTAG 58.054 37.500 4.94 0.00 40.34 2.18
54 55 5.706833 TGACAAATCATTGCAAGCTCTTAGA 59.293 36.000 4.94 0.00 40.34 2.10
55 56 6.207221 TGACAAATCATTGCAAGCTCTTAGAA 59.793 34.615 4.94 0.00 40.34 2.10
56 57 6.385033 ACAAATCATTGCAAGCTCTTAGAAC 58.615 36.000 4.94 0.00 40.34 3.01
57 58 6.208204 ACAAATCATTGCAAGCTCTTAGAACT 59.792 34.615 4.94 0.00 40.34 3.01
58 59 6.830873 AATCATTGCAAGCTCTTAGAACTT 57.169 33.333 4.94 0.00 0.00 2.66
59 60 6.830873 ATCATTGCAAGCTCTTAGAACTTT 57.169 33.333 4.94 0.00 0.00 2.66
60 61 6.639632 TCATTGCAAGCTCTTAGAACTTTT 57.360 33.333 4.94 0.00 0.00 2.27
61 62 6.441274 TCATTGCAAGCTCTTAGAACTTTTG 58.559 36.000 4.94 0.00 0.00 2.44
62 63 5.835113 TTGCAAGCTCTTAGAACTTTTGT 57.165 34.783 0.00 0.00 0.00 2.83
63 64 5.424121 TGCAAGCTCTTAGAACTTTTGTC 57.576 39.130 0.00 0.00 0.00 3.18
64 65 4.881273 TGCAAGCTCTTAGAACTTTTGTCA 59.119 37.500 0.00 0.00 0.00 3.58
65 66 5.356751 TGCAAGCTCTTAGAACTTTTGTCAA 59.643 36.000 0.00 0.00 0.00 3.18
66 67 6.039717 TGCAAGCTCTTAGAACTTTTGTCAAT 59.960 34.615 0.00 0.00 0.00 2.57
67 68 6.361748 GCAAGCTCTTAGAACTTTTGTCAATG 59.638 38.462 0.00 0.00 0.00 2.82
68 69 7.420800 CAAGCTCTTAGAACTTTTGTCAATGT 58.579 34.615 0.00 0.00 0.00 2.71
69 70 7.573968 AGCTCTTAGAACTTTTGTCAATGTT 57.426 32.000 4.72 4.72 33.94 2.71
70 71 8.000780 AGCTCTTAGAACTTTTGTCAATGTTT 57.999 30.769 6.10 0.00 31.96 2.83
71 72 7.917505 AGCTCTTAGAACTTTTGTCAATGTTTG 59.082 33.333 6.10 0.00 31.96 2.93
72 73 7.702348 GCTCTTAGAACTTTTGTCAATGTTTGT 59.298 33.333 6.10 1.85 31.96 2.83
73 74 9.226345 CTCTTAGAACTTTTGTCAATGTTTGTC 57.774 33.333 6.10 0.00 31.96 3.18
74 75 8.735315 TCTTAGAACTTTTGTCAATGTTTGTCA 58.265 29.630 6.10 0.00 31.96 3.58
75 76 8.682128 TTAGAACTTTTGTCAATGTTTGTCAC 57.318 30.769 6.10 0.00 31.96 3.67
76 77 6.686630 AGAACTTTTGTCAATGTTTGTCACA 58.313 32.000 6.10 0.00 40.71 3.58
77 78 7.151308 AGAACTTTTGTCAATGTTTGTCACAA 58.849 30.769 0.00 0.00 39.50 3.33
78 79 7.655328 AGAACTTTTGTCAATGTTTGTCACAAA 59.345 29.630 0.00 0.00 39.50 2.83
79 80 7.721286 ACTTTTGTCAATGTTTGTCACAAAA 57.279 28.000 4.02 14.19 39.50 2.44
81 82 7.953158 TTTTGTCAATGTTTGTCACAAAAGA 57.047 28.000 4.02 0.00 39.50 2.52
82 83 7.953158 TTTGTCAATGTTTGTCACAAAAGAA 57.047 28.000 4.02 0.00 39.50 2.52
83 84 8.545229 TTTGTCAATGTTTGTCACAAAAGAAT 57.455 26.923 4.02 0.00 39.50 2.40
84 85 8.545229 TTGTCAATGTTTGTCACAAAAGAATT 57.455 26.923 4.02 3.15 39.50 2.17
85 86 8.545229 TGTCAATGTTTGTCACAAAAGAATTT 57.455 26.923 4.02 0.00 42.41 1.82
86 87 8.655092 TGTCAATGTTTGTCACAAAAGAATTTC 58.345 29.630 4.02 3.12 37.28 2.17
87 88 8.655092 GTCAATGTTTGTCACAAAAGAATTTCA 58.345 29.630 4.02 0.00 37.28 2.69
88 89 8.871862 TCAATGTTTGTCACAAAAGAATTTCAG 58.128 29.630 4.02 0.00 37.28 3.02
89 90 8.871862 CAATGTTTGTCACAAAAGAATTTCAGA 58.128 29.630 4.02 0.00 37.28 3.27
90 91 9.603921 AATGTTTGTCACAAAAGAATTTCAGAT 57.396 25.926 4.02 0.00 37.28 2.90
91 92 9.603921 ATGTTTGTCACAAAAGAATTTCAGATT 57.396 25.926 4.02 0.00 37.28 2.40
92 93 9.434420 TGTTTGTCACAAAAGAATTTCAGATTT 57.566 25.926 4.02 0.00 37.28 2.17
122 123 3.518634 TTTCCTGTTTTGCTGTTCACC 57.481 42.857 0.00 0.00 0.00 4.02
123 124 1.398692 TCCTGTTTTGCTGTTCACCC 58.601 50.000 0.00 0.00 0.00 4.61
124 125 1.110442 CCTGTTTTGCTGTTCACCCA 58.890 50.000 0.00 0.00 0.00 4.51
125 126 1.480137 CCTGTTTTGCTGTTCACCCAA 59.520 47.619 0.00 0.00 0.00 4.12
126 127 2.481795 CCTGTTTTGCTGTTCACCCAAG 60.482 50.000 0.00 0.00 0.00 3.61
127 128 1.134848 TGTTTTGCTGTTCACCCAAGC 60.135 47.619 0.00 0.00 0.00 4.01
128 129 1.136891 GTTTTGCTGTTCACCCAAGCT 59.863 47.619 0.00 0.00 0.00 3.74
129 130 1.032014 TTTGCTGTTCACCCAAGCTC 58.968 50.000 0.00 0.00 0.00 4.09
130 131 0.106769 TTGCTGTTCACCCAAGCTCA 60.107 50.000 0.00 0.00 0.00 4.26
131 132 0.111061 TGCTGTTCACCCAAGCTCAT 59.889 50.000 0.00 0.00 0.00 2.90
132 133 1.251251 GCTGTTCACCCAAGCTCATT 58.749 50.000 0.00 0.00 0.00 2.57
133 134 1.615392 GCTGTTCACCCAAGCTCATTT 59.385 47.619 0.00 0.00 0.00 2.32
134 135 2.608752 GCTGTTCACCCAAGCTCATTTG 60.609 50.000 0.00 0.00 0.00 2.32
135 136 2.886523 CTGTTCACCCAAGCTCATTTGA 59.113 45.455 0.00 0.00 0.00 2.69
136 137 2.886523 TGTTCACCCAAGCTCATTTGAG 59.113 45.455 3.13 3.13 44.75 3.02
144 145 3.819188 CTCATTTGAGCTCGGGCC 58.181 61.111 2.00 0.00 39.73 5.80
145 146 1.078214 CTCATTTGAGCTCGGGCCA 60.078 57.895 2.00 0.00 39.73 5.36
146 147 0.677731 CTCATTTGAGCTCGGGCCAA 60.678 55.000 2.00 5.20 39.73 4.52
147 148 0.677731 TCATTTGAGCTCGGGCCAAG 60.678 55.000 2.00 1.81 39.73 3.61
148 149 0.677731 CATTTGAGCTCGGGCCAAGA 60.678 55.000 2.00 1.83 39.73 3.02
149 150 0.038166 ATTTGAGCTCGGGCCAAGAA 59.962 50.000 2.00 0.00 39.73 2.52
150 151 0.179004 TTTGAGCTCGGGCCAAGAAA 60.179 50.000 2.00 0.00 39.73 2.52
151 152 0.889186 TTGAGCTCGGGCCAAGAAAC 60.889 55.000 2.00 0.00 39.73 2.78
152 153 1.003233 GAGCTCGGGCCAAGAAACT 60.003 57.895 2.00 3.71 39.73 2.66
153 154 1.003233 AGCTCGGGCCAAGAAACTC 60.003 57.895 2.00 0.00 39.73 3.01
154 155 2.041115 GCTCGGGCCAAGAAACTCC 61.041 63.158 4.39 0.00 0.00 3.85
155 156 1.374947 CTCGGGCCAAGAAACTCCA 59.625 57.895 4.39 0.00 0.00 3.86
156 157 0.955919 CTCGGGCCAAGAAACTCCAC 60.956 60.000 4.39 0.00 0.00 4.02
157 158 1.228124 CGGGCCAAGAAACTCCACA 60.228 57.895 4.39 0.00 0.00 4.17
158 159 0.609131 CGGGCCAAGAAACTCCACAT 60.609 55.000 4.39 0.00 0.00 3.21
159 160 1.177401 GGGCCAAGAAACTCCACATC 58.823 55.000 4.39 0.00 0.00 3.06
160 161 1.177401 GGCCAAGAAACTCCACATCC 58.823 55.000 0.00 0.00 0.00 3.51
183 184 6.884295 TCCCATTGTCAAGTACTTTTATGGAG 59.116 38.462 23.64 17.41 34.58 3.86
198 199 8.860088 ACTTTTATGGAGCTTTGTTATTGTTCT 58.140 29.630 0.00 0.00 0.00 3.01
205 207 7.646130 TGGAGCTTTGTTATTGTTCTTTAAACG 59.354 33.333 0.00 0.00 0.00 3.60
286 288 9.730420 TTGTTTTGAGATGTTTAAGCTTTCTAC 57.270 29.630 3.20 1.12 0.00 2.59
331 346 3.433343 TGGCACTGAAATCCACATGATT 58.567 40.909 0.00 0.00 45.75 2.57
374 389 9.846248 AAATCTTTGCTCTTGATGTATTACAAC 57.154 29.630 0.00 0.00 0.00 3.32
696 718 4.598894 CAGGATCCAGCCTCCGCG 62.599 72.222 15.82 0.00 41.18 6.46
851 873 1.115467 TCCTTCAGATCCGCTCTTCC 58.885 55.000 0.00 0.00 29.16 3.46
852 874 1.118838 CCTTCAGATCCGCTCTTCCT 58.881 55.000 0.00 0.00 29.16 3.36
1266 1288 7.956943 GCAAATACTTGTGAAATGGTATTTTGC 59.043 33.333 0.00 0.00 40.56 3.68
1274 1296 5.754890 GTGAAATGGTATTTTGCCATGATCC 59.245 40.000 0.00 0.00 45.21 3.36
1444 1466 7.043458 GGTTTATGTGACATAAAATTGATGCCG 60.043 37.037 26.80 0.00 0.00 5.69
1458 1480 7.956420 AATTGATGCCGTTAGATTCGTATTA 57.044 32.000 0.00 0.00 0.00 0.98
1483 1506 7.867445 AAAAAGTACTTGCGATTTTGTATGG 57.133 32.000 9.34 0.00 0.00 2.74
1484 1507 4.616181 AGTACTTGCGATTTTGTATGGC 57.384 40.909 0.00 0.00 0.00 4.40
1485 1508 2.542766 ACTTGCGATTTTGTATGGCG 57.457 45.000 0.00 0.00 0.00 5.69
1578 1669 9.994017 AGAGGGACTAGTAAGTTACTTTCTTAT 57.006 33.333 20.28 4.34 41.55 1.73
1639 1730 9.956720 ATATTTTCTTGCGAAAGATAATCCAAG 57.043 29.630 21.00 5.61 40.04 3.61
1640 1731 6.817765 TTTCTTGCGAAAGATAATCCAAGT 57.182 33.333 6.69 0.00 34.35 3.16
1810 1905 6.865726 AGTTATCTTTGCTATCGTGATGCTAG 59.134 38.462 0.00 0.00 0.00 3.42
1999 2102 8.729805 TGACATATCTTGCATAACACATGTAA 57.270 30.769 0.00 0.00 0.00 2.41
2006 2109 9.882996 ATCTTGCATAACACATGTAATTATTCG 57.117 29.630 0.00 0.00 0.00 3.34
2007 2110 8.341903 TCTTGCATAACACATGTAATTATTCGG 58.658 33.333 0.00 0.00 0.00 4.30
2008 2111 7.561021 TGCATAACACATGTAATTATTCGGT 57.439 32.000 0.00 0.00 0.00 4.69
2009 2112 7.990917 TGCATAACACATGTAATTATTCGGTT 58.009 30.769 0.00 0.00 0.00 4.44
2010 2113 9.110502 TGCATAACACATGTAATTATTCGGTTA 57.889 29.630 0.00 0.00 0.00 2.85
2190 2294 6.763610 CCTCACTTCTTATTCGCCTCTTTAAT 59.236 38.462 0.00 0.00 0.00 1.40
2228 2332 1.604278 ACAGTCTCGAAAGCAAAAGGC 59.396 47.619 0.00 0.00 45.30 4.35
2456 2561 9.856162 TTATGTTTCTATTTTCCCTATACCCAC 57.144 33.333 0.00 0.00 0.00 4.61
2644 2749 3.769739 TTTAGAGGCAGAGTCTTGCAA 57.230 42.857 14.02 0.00 45.86 4.08
2715 2820 4.621991 ACCTGACACATATTGAGCGTATC 58.378 43.478 0.00 0.00 0.00 2.24
3077 3197 6.662755 TCTACCTGCCTCATTTTACATGATT 58.337 36.000 0.00 0.00 0.00 2.57
3120 3240 8.632906 AGGAATATTAAGAAGCATTGATCAGG 57.367 34.615 0.00 0.00 0.00 3.86
3251 7190 3.195698 GGCGTCCAAGGCATCGAC 61.196 66.667 0.00 0.00 36.61 4.20
3376 7315 9.232473 TGAGATACATACATACAGTAGCTAAGG 57.768 37.037 0.00 0.00 34.92 2.69
3399 7338 2.755952 AAAAGGGACCTGCAAACTCT 57.244 45.000 0.00 0.00 0.00 3.24
3400 7339 2.755952 AAAGGGACCTGCAAACTCTT 57.244 45.000 0.00 0.00 0.00 2.85
3401 7340 2.755952 AAGGGACCTGCAAACTCTTT 57.244 45.000 0.00 0.00 0.00 2.52
3402 7341 1.986882 AGGGACCTGCAAACTCTTTG 58.013 50.000 0.00 0.00 43.44 2.77
3403 7342 1.494721 AGGGACCTGCAAACTCTTTGA 59.505 47.619 0.00 0.00 43.26 2.69
3404 7343 2.108952 AGGGACCTGCAAACTCTTTGAT 59.891 45.455 0.00 0.00 43.26 2.57
3405 7344 2.893489 GGGACCTGCAAACTCTTTGATT 59.107 45.455 0.00 0.00 43.26 2.57
3406 7345 3.057245 GGGACCTGCAAACTCTTTGATTC 60.057 47.826 0.00 0.00 43.26 2.52
3407 7346 3.569701 GGACCTGCAAACTCTTTGATTCA 59.430 43.478 0.00 0.00 43.26 2.57
3408 7347 4.037923 GGACCTGCAAACTCTTTGATTCAA 59.962 41.667 0.00 0.00 43.26 2.69
3426 7365 9.705103 TTGATTCAAAGGATTTTCATAGGATCT 57.295 29.630 0.00 0.00 35.03 2.75
3427 7366 9.705103 TGATTCAAAGGATTTTCATAGGATCTT 57.295 29.630 0.00 0.00 35.03 2.40
3430 7369 8.297470 TCAAAGGATTTTCATAGGATCTTTGG 57.703 34.615 0.00 0.00 35.03 3.28
3431 7370 8.115384 TCAAAGGATTTTCATAGGATCTTTGGA 58.885 33.333 0.00 0.00 35.03 3.53
3432 7371 8.411683 CAAAGGATTTTCATAGGATCTTTGGAG 58.588 37.037 0.00 0.00 35.03 3.86
3433 7372 6.608922 AGGATTTTCATAGGATCTTTGGAGG 58.391 40.000 0.00 0.00 0.00 4.30
3434 7373 6.391055 AGGATTTTCATAGGATCTTTGGAGGA 59.609 38.462 0.00 0.00 0.00 3.71
3435 7374 7.074751 AGGATTTTCATAGGATCTTTGGAGGAT 59.925 37.037 0.00 0.00 0.00 3.24
3436 7375 7.727634 GGATTTTCATAGGATCTTTGGAGGATT 59.272 37.037 0.00 0.00 0.00 3.01
3437 7376 9.799106 GATTTTCATAGGATCTTTGGAGGATTA 57.201 33.333 0.00 0.00 0.00 1.75
3438 7377 9.804977 ATTTTCATAGGATCTTTGGAGGATTAG 57.195 33.333 0.00 0.00 0.00 1.73
3439 7378 8.567198 TTTCATAGGATCTTTGGAGGATTAGA 57.433 34.615 0.00 0.00 0.00 2.10
3440 7379 8.567198 TTCATAGGATCTTTGGAGGATTAGAA 57.433 34.615 0.00 0.00 0.00 2.10
3441 7380 8.748179 TCATAGGATCTTTGGAGGATTAGAAT 57.252 34.615 0.00 0.00 0.00 2.40
3442 7381 8.820831 TCATAGGATCTTTGGAGGATTAGAATC 58.179 37.037 0.00 0.00 34.66 2.52
3469 7408 5.541098 GGAATTTTTCCTACGTTGATCGT 57.459 39.130 0.00 0.00 46.84 3.73
3481 7420 4.164802 CGTTGATCGTTTGATTCGTAGG 57.835 45.455 0.00 0.00 34.09 3.18
3482 7421 3.855379 CGTTGATCGTTTGATTCGTAGGA 59.145 43.478 0.00 0.00 34.09 2.94
3483 7422 4.503007 CGTTGATCGTTTGATTCGTAGGAT 59.497 41.667 0.00 0.00 34.09 3.24
3484 7423 5.005394 CGTTGATCGTTTGATTCGTAGGATT 59.995 40.000 0.00 0.00 34.09 3.01
3485 7424 5.966636 TGATCGTTTGATTCGTAGGATTG 57.033 39.130 0.00 0.00 34.09 2.67
3486 7425 5.656480 TGATCGTTTGATTCGTAGGATTGA 58.344 37.500 0.00 0.00 34.09 2.57
3487 7426 6.103330 TGATCGTTTGATTCGTAGGATTGAA 58.897 36.000 0.00 0.00 34.09 2.69
3488 7427 6.761242 TGATCGTTTGATTCGTAGGATTGAAT 59.239 34.615 0.00 0.00 37.52 2.57
3489 7428 6.583912 TCGTTTGATTCGTAGGATTGAATC 57.416 37.500 7.76 7.76 46.77 2.52
3490 7429 5.522460 TCGTTTGATTCGTAGGATTGAATCC 59.478 40.000 16.35 16.35 46.29 3.01
3549 7488 8.877864 ACATTTTACAGGAATTCTAACATCCA 57.122 30.769 5.23 0.00 35.62 3.41
3550 7489 8.739972 ACATTTTACAGGAATTCTAACATCCAC 58.260 33.333 5.23 0.00 35.62 4.02
3551 7490 8.960591 CATTTTACAGGAATTCTAACATCCACT 58.039 33.333 5.23 0.00 35.62 4.00
3552 7491 8.561738 TTTTACAGGAATTCTAACATCCACTC 57.438 34.615 5.23 0.00 35.62 3.51
3553 7492 5.104259 ACAGGAATTCTAACATCCACTCC 57.896 43.478 5.23 0.00 35.62 3.85
3554 7493 4.536090 ACAGGAATTCTAACATCCACTCCA 59.464 41.667 5.23 0.00 35.62 3.86
3555 7494 5.014123 ACAGGAATTCTAACATCCACTCCAA 59.986 40.000 5.23 0.00 35.62 3.53
3556 7495 5.355350 CAGGAATTCTAACATCCACTCCAAC 59.645 44.000 5.23 0.00 35.62 3.77
3557 7496 4.640647 GGAATTCTAACATCCACTCCAACC 59.359 45.833 5.23 0.00 33.30 3.77
3558 7497 5.501156 GAATTCTAACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
3559 7498 4.553330 TTCTAACATCCACTCCAACCTC 57.447 45.455 0.00 0.00 0.00 3.85
3560 7499 3.791320 TCTAACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
3561 7500 4.168101 TCTAACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
3562 7501 2.867109 ACATCCACTCCAACCTCTTG 57.133 50.000 0.00 0.00 0.00 3.02
3585 7524 4.988540 GGAAGAAATCCTTTGTTTTTCCCG 59.011 41.667 0.00 0.00 45.56 5.14
3586 7525 5.452776 GGAAGAAATCCTTTGTTTTTCCCGT 60.453 40.000 0.00 0.00 45.56 5.28
3587 7526 4.944048 AGAAATCCTTTGTTTTTCCCGTG 58.056 39.130 0.00 0.00 31.25 4.94
3588 7527 4.647399 AGAAATCCTTTGTTTTTCCCGTGA 59.353 37.500 0.00 0.00 31.25 4.35
3589 7528 4.316205 AATCCTTTGTTTTTCCCGTGAC 57.684 40.909 0.00 0.00 0.00 3.67
3590 7529 2.724454 TCCTTTGTTTTTCCCGTGACA 58.276 42.857 0.00 0.00 0.00 3.58
3591 7530 2.424246 TCCTTTGTTTTTCCCGTGACAC 59.576 45.455 0.00 0.00 0.00 3.67
3592 7531 2.164624 CCTTTGTTTTTCCCGTGACACA 59.835 45.455 6.37 0.00 0.00 3.72
3593 7532 3.367498 CCTTTGTTTTTCCCGTGACACAA 60.367 43.478 6.37 0.00 0.00 3.33
3594 7533 4.429108 CTTTGTTTTTCCCGTGACACAAT 58.571 39.130 6.37 0.00 0.00 2.71
3595 7534 3.701532 TGTTTTTCCCGTGACACAATC 57.298 42.857 6.37 0.00 0.00 2.67
3596 7535 3.017442 TGTTTTTCCCGTGACACAATCA 58.983 40.909 6.37 0.00 33.79 2.57
3597 7536 3.444034 TGTTTTTCCCGTGACACAATCAA 59.556 39.130 6.37 0.00 39.72 2.57
3598 7537 4.082190 TGTTTTTCCCGTGACACAATCAAA 60.082 37.500 6.37 0.00 39.72 2.69
3599 7538 3.701532 TTTCCCGTGACACAATCAAAC 57.298 42.857 6.37 0.00 39.72 2.93
3600 7539 2.333688 TCCCGTGACACAATCAAACA 57.666 45.000 6.37 0.00 39.72 2.83
3601 7540 2.644676 TCCCGTGACACAATCAAACAA 58.355 42.857 6.37 0.00 39.72 2.83
3602 7541 3.017442 TCCCGTGACACAATCAAACAAA 58.983 40.909 6.37 0.00 39.72 2.83
3603 7542 3.112580 CCCGTGACACAATCAAACAAAC 58.887 45.455 6.37 0.00 39.72 2.93
3604 7543 3.181491 CCCGTGACACAATCAAACAAACT 60.181 43.478 6.37 0.00 39.72 2.66
3605 7544 4.035017 CCGTGACACAATCAAACAAACTC 58.965 43.478 6.37 0.00 39.72 3.01
3606 7545 4.438065 CCGTGACACAATCAAACAAACTCA 60.438 41.667 6.37 0.00 39.72 3.41
3607 7546 4.495472 CGTGACACAATCAAACAAACTCAC 59.505 41.667 6.37 0.00 39.72 3.51
3608 7547 5.398169 GTGACACAATCAAACAAACTCACA 58.602 37.500 0.00 0.00 39.72 3.58
3609 7548 5.861251 GTGACACAATCAAACAAACTCACAA 59.139 36.000 0.00 0.00 39.72 3.33
3610 7549 6.364706 GTGACACAATCAAACAAACTCACAAA 59.635 34.615 0.00 0.00 39.72 2.83
3611 7550 7.063308 GTGACACAATCAAACAAACTCACAAAT 59.937 33.333 0.00 0.00 39.72 2.32
3612 7551 7.275341 TGACACAATCAAACAAACTCACAAATC 59.725 33.333 0.00 0.00 33.02 2.17
3613 7552 6.534793 ACACAATCAAACAAACTCACAAATCC 59.465 34.615 0.00 0.00 0.00 3.01
3614 7553 6.757947 CACAATCAAACAAACTCACAAATCCT 59.242 34.615 0.00 0.00 0.00 3.24
3615 7554 7.920151 CACAATCAAACAAACTCACAAATCCTA 59.080 33.333 0.00 0.00 0.00 2.94
3616 7555 8.641541 ACAATCAAACAAACTCACAAATCCTAT 58.358 29.630 0.00 0.00 0.00 2.57
3619 7558 8.335532 TCAAACAAACTCACAAATCCTATAGG 57.664 34.615 13.07 13.07 0.00 2.57
3620 7559 7.393234 TCAAACAAACTCACAAATCCTATAGGG 59.607 37.037 18.97 5.11 35.41 3.53
3632 7571 4.502036 TCCTATAGGGATCCAATGGACA 57.498 45.455 18.97 0.00 39.58 4.02
3633 7572 5.041695 TCCTATAGGGATCCAATGGACAT 57.958 43.478 18.97 0.00 39.58 3.06
3634 7573 4.784838 TCCTATAGGGATCCAATGGACATG 59.215 45.833 18.97 0.00 39.58 3.21
3635 7574 2.957402 TAGGGATCCAATGGACATGC 57.043 50.000 15.23 0.00 32.98 4.06
3636 7575 0.186873 AGGGATCCAATGGACATGCC 59.813 55.000 15.23 4.48 32.98 4.40
3646 7585 1.779221 TGGACATGCCATTCCAATCC 58.221 50.000 4.93 0.00 43.33 3.01
3647 7586 1.288633 TGGACATGCCATTCCAATCCT 59.711 47.619 4.93 0.00 43.33 3.24
3648 7587 2.513317 TGGACATGCCATTCCAATCCTA 59.487 45.455 4.93 0.00 43.33 2.94
3649 7588 2.887152 GGACATGCCATTCCAATCCTAC 59.113 50.000 0.00 0.00 36.34 3.18
3650 7589 2.549754 GACATGCCATTCCAATCCTACG 59.450 50.000 0.00 0.00 0.00 3.51
3651 7590 2.092429 ACATGCCATTCCAATCCTACGT 60.092 45.455 0.00 0.00 0.00 3.57
3652 7591 2.799126 TGCCATTCCAATCCTACGTT 57.201 45.000 0.00 0.00 0.00 3.99
3653 7592 3.080300 TGCCATTCCAATCCTACGTTT 57.920 42.857 0.00 0.00 0.00 3.60
3654 7593 3.426615 TGCCATTCCAATCCTACGTTTT 58.573 40.909 0.00 0.00 0.00 2.43
3655 7594 3.442273 TGCCATTCCAATCCTACGTTTTC 59.558 43.478 0.00 0.00 0.00 2.29
3656 7595 3.694566 GCCATTCCAATCCTACGTTTTCT 59.305 43.478 0.00 0.00 0.00 2.52
3657 7596 4.201920 GCCATTCCAATCCTACGTTTTCTC 60.202 45.833 0.00 0.00 0.00 2.87
3658 7597 5.186198 CCATTCCAATCCTACGTTTTCTCT 58.814 41.667 0.00 0.00 0.00 3.10
3659 7598 6.346096 CCATTCCAATCCTACGTTTTCTCTA 58.654 40.000 0.00 0.00 0.00 2.43
3660 7599 6.992715 CCATTCCAATCCTACGTTTTCTCTAT 59.007 38.462 0.00 0.00 0.00 1.98
3661 7600 7.499232 CCATTCCAATCCTACGTTTTCTCTATT 59.501 37.037 0.00 0.00 0.00 1.73
3662 7601 8.552034 CATTCCAATCCTACGTTTTCTCTATTC 58.448 37.037 0.00 0.00 0.00 1.75
3663 7602 6.579865 TCCAATCCTACGTTTTCTCTATTCC 58.420 40.000 0.00 0.00 0.00 3.01
3664 7603 6.383147 TCCAATCCTACGTTTTCTCTATTCCT 59.617 38.462 0.00 0.00 0.00 3.36
3665 7604 6.480320 CCAATCCTACGTTTTCTCTATTCCTG 59.520 42.308 0.00 0.00 0.00 3.86
3666 7605 6.793505 ATCCTACGTTTTCTCTATTCCTGT 57.206 37.500 0.00 0.00 0.00 4.00
3667 7606 5.962433 TCCTACGTTTTCTCTATTCCTGTG 58.038 41.667 0.00 0.00 0.00 3.66
3668 7607 5.479375 TCCTACGTTTTCTCTATTCCTGTGT 59.521 40.000 0.00 0.00 0.00 3.72
3669 7608 6.014840 TCCTACGTTTTCTCTATTCCTGTGTT 60.015 38.462 0.00 0.00 0.00 3.32
3670 7609 6.649557 CCTACGTTTTCTCTATTCCTGTGTTT 59.350 38.462 0.00 0.00 0.00 2.83
3671 7610 6.937436 ACGTTTTCTCTATTCCTGTGTTTT 57.063 33.333 0.00 0.00 0.00 2.43
3672 7611 7.329588 ACGTTTTCTCTATTCCTGTGTTTTT 57.670 32.000 0.00 0.00 0.00 1.94
3673 7612 7.193595 ACGTTTTCTCTATTCCTGTGTTTTTG 58.806 34.615 0.00 0.00 0.00 2.44
3674 7613 6.142320 CGTTTTCTCTATTCCTGTGTTTTTGC 59.858 38.462 0.00 0.00 0.00 3.68
3675 7614 6.707440 TTTCTCTATTCCTGTGTTTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
3676 7615 6.707440 TTCTCTATTCCTGTGTTTTTGCAA 57.293 33.333 0.00 0.00 0.00 4.08
3677 7616 6.899393 TCTCTATTCCTGTGTTTTTGCAAT 57.101 33.333 0.00 0.00 0.00 3.56
3678 7617 6.913170 TCTCTATTCCTGTGTTTTTGCAATC 58.087 36.000 0.00 0.00 0.00 2.67
3679 7618 6.024552 TCTATTCCTGTGTTTTTGCAATCC 57.975 37.500 0.00 0.00 0.00 3.01
3680 7619 4.961438 ATTCCTGTGTTTTTGCAATCCT 57.039 36.364 0.00 0.00 0.00 3.24
3681 7620 6.945435 TCTATTCCTGTGTTTTTGCAATCCTA 59.055 34.615 0.00 0.00 0.00 2.94
3682 7621 6.610075 ATTCCTGTGTTTTTGCAATCCTAT 57.390 33.333 0.00 0.00 0.00 2.57
3683 7622 5.389859 TCCTGTGTTTTTGCAATCCTATG 57.610 39.130 0.00 0.00 0.00 2.23
3684 7623 5.076182 TCCTGTGTTTTTGCAATCCTATGA 58.924 37.500 0.00 0.00 0.00 2.15
3685 7624 5.538053 TCCTGTGTTTTTGCAATCCTATGAA 59.462 36.000 0.00 0.00 0.00 2.57
3686 7625 6.211184 TCCTGTGTTTTTGCAATCCTATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
3687 7626 6.532657 CCTGTGTTTTTGCAATCCTATGAATC 59.467 38.462 0.00 0.00 0.00 2.52
3688 7627 6.990798 TGTGTTTTTGCAATCCTATGAATCA 58.009 32.000 0.00 0.00 0.00 2.57
3689 7628 7.440198 TGTGTTTTTGCAATCCTATGAATCAA 58.560 30.769 0.00 0.00 0.00 2.57
3889 7828 6.665248 TGATGAGGAACAATAGAGAGAAGACA 59.335 38.462 0.00 0.00 0.00 3.41
4258 8621 4.778427 TCGCCTCTAGAGTGATATCTAGGA 59.222 45.833 18.42 0.00 45.93 2.94
4441 8835 0.036010 TTACAGCTGGCTCTTCAGGC 60.036 55.000 19.93 0.00 45.76 4.85
4726 9122 8.359642 GTGCATATCCCAAATAAATTAGCAGAA 58.640 33.333 0.00 0.00 0.00 3.02
4808 9209 9.083080 GTTATGTGGTTGATTTATTGGCTAAAC 57.917 33.333 0.00 0.00 32.23 2.01
5204 9607 1.532868 AGCGAGCTTAAAGTTGCTGTG 59.467 47.619 0.00 0.00 39.91 3.66
5362 9767 9.349713 CAAAATTATTAGGGAGTAACTGCCATA 57.650 33.333 0.00 0.00 44.71 2.74
5645 10050 6.320672 TGCTAGGTGGATAGTAAGTACTTCAC 59.679 42.308 12.39 12.29 37.73 3.18
5659 10064 1.820519 ACTTCACGTTATACGGGCAGA 59.179 47.619 8.04 0.00 46.20 4.26
5660 10065 2.231964 ACTTCACGTTATACGGGCAGAA 59.768 45.455 8.04 4.05 46.20 3.02
5838 10249 5.743117 AGGCCAGATATGAGCATTTATCTC 58.257 41.667 5.01 0.00 33.84 2.75
5841 10252 6.985645 GGCCAGATATGAGCATTTATCTCTAG 59.014 42.308 0.00 0.00 33.84 2.43
5899 10310 7.066307 ACAAAAAGGATAGCCATGTTCTTTT 57.934 32.000 0.00 0.00 36.41 2.27
5977 10392 0.953727 GGTGCAGCACATGTTTCTGA 59.046 50.000 26.78 9.60 35.86 3.27
6167 10593 9.827411 GTGTTTGTTCTTATCTATTTCTTCCAC 57.173 33.333 0.00 0.00 0.00 4.02
6185 10612 8.884124 TCTTCCACAATTCTCCTCATTAAATT 57.116 30.769 0.00 0.00 0.00 1.82
6366 10793 8.447924 GGTATCCTTACCCATTTCTTAACTTC 57.552 38.462 0.00 0.00 41.91 3.01
6368 10795 9.110502 GTATCCTTACCCATTTCTTAACTTCAG 57.889 37.037 0.00 0.00 0.00 3.02
6510 10939 5.147330 ACACAGAATCATCGGTAAGTTCA 57.853 39.130 0.00 0.00 32.42 3.18
6519 10948 9.706691 GAATCATCGGTAAGTTCATATCCTTTA 57.293 33.333 0.00 0.00 0.00 1.85
6599 11028 9.396022 TCCTTGATTCCTTGATTACTTTGATAC 57.604 33.333 0.00 0.00 0.00 2.24
7036 11472 7.387673 TGGGTACGCTCATGATATTTGAATTAG 59.612 37.037 11.59 0.00 0.00 1.73
7085 11521 2.670229 CGTCTCTGCGCCTACAAACTTA 60.670 50.000 4.18 0.00 0.00 2.24
7210 11646 6.824305 ACAGAAATTCTCATTGTTTCGGAT 57.176 33.333 0.00 0.00 37.04 4.18
7303 11739 8.347035 CCCCACAATTATATTTACGTTTCGAAT 58.653 33.333 0.00 0.00 0.00 3.34
7314 11750 6.788684 TTACGTTTCGAATGAAGGAAATCA 57.211 33.333 0.00 0.00 34.93 2.57
7421 11857 7.342284 AGAATACTAACTAGCTCACTGCCTTTA 59.658 37.037 0.00 0.00 44.23 1.85
7456 11892 3.215151 TCTGCAGGTAGGATAGAAGACG 58.785 50.000 15.13 0.00 0.00 4.18
7457 11893 3.118000 TCTGCAGGTAGGATAGAAGACGA 60.118 47.826 15.13 0.00 0.00 4.20
7458 11894 2.950309 TGCAGGTAGGATAGAAGACGAC 59.050 50.000 0.00 0.00 0.00 4.34
7459 11895 3.215975 GCAGGTAGGATAGAAGACGACT 58.784 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.863401 AAAAAGTTGCCACGACTTCC 57.137 45.000 0.82 0.00 36.38 3.46
21 22 8.444715 GCTTGCAATGATTTGTCATGAAATAAA 58.555 29.630 0.00 0.03 35.17 1.40
22 23 7.820386 AGCTTGCAATGATTTGTCATGAAATAA 59.180 29.630 0.00 0.00 35.17 1.40
23 24 7.324935 AGCTTGCAATGATTTGTCATGAAATA 58.675 30.769 0.00 0.00 35.17 1.40
24 25 6.170506 AGCTTGCAATGATTTGTCATGAAAT 58.829 32.000 0.00 0.00 35.17 2.17
25 26 5.543714 AGCTTGCAATGATTTGTCATGAAA 58.456 33.333 0.00 0.00 35.17 2.69
26 27 5.047590 AGAGCTTGCAATGATTTGTCATGAA 60.048 36.000 0.00 0.00 35.17 2.57
27 28 4.461431 AGAGCTTGCAATGATTTGTCATGA 59.539 37.500 0.00 0.00 35.17 3.07
28 29 4.744570 AGAGCTTGCAATGATTTGTCATG 58.255 39.130 0.00 0.00 35.17 3.07
29 30 5.401531 AAGAGCTTGCAATGATTTGTCAT 57.598 34.783 0.00 0.00 35.17 3.06
30 31 4.859304 AAGAGCTTGCAATGATTTGTCA 57.141 36.364 0.00 0.00 35.17 3.58
31 32 6.187125 TCTAAGAGCTTGCAATGATTTGTC 57.813 37.500 0.00 0.00 35.17 3.18
32 33 6.208204 AGTTCTAAGAGCTTGCAATGATTTGT 59.792 34.615 0.00 0.00 35.17 2.83
33 34 6.618811 AGTTCTAAGAGCTTGCAATGATTTG 58.381 36.000 0.00 0.00 35.85 2.32
34 35 6.830873 AGTTCTAAGAGCTTGCAATGATTT 57.169 33.333 0.00 0.00 0.00 2.17
35 36 6.830873 AAGTTCTAAGAGCTTGCAATGATT 57.169 33.333 0.00 0.00 32.19 2.57
36 37 6.830873 AAAGTTCTAAGAGCTTGCAATGAT 57.169 33.333 0.00 0.00 33.62 2.45
37 38 6.039717 ACAAAAGTTCTAAGAGCTTGCAATGA 59.960 34.615 0.00 0.00 33.62 2.57
38 39 6.211515 ACAAAAGTTCTAAGAGCTTGCAATG 58.788 36.000 0.00 0.00 33.62 2.82
39 40 6.039717 TGACAAAAGTTCTAAGAGCTTGCAAT 59.960 34.615 0.00 0.00 33.62 3.56
40 41 5.356751 TGACAAAAGTTCTAAGAGCTTGCAA 59.643 36.000 0.00 0.00 33.62 4.08
41 42 4.881273 TGACAAAAGTTCTAAGAGCTTGCA 59.119 37.500 0.00 0.00 33.62 4.08
42 43 5.424121 TGACAAAAGTTCTAAGAGCTTGC 57.576 39.130 0.00 0.00 33.62 4.01
43 44 7.420800 ACATTGACAAAAGTTCTAAGAGCTTG 58.579 34.615 0.00 0.00 33.62 4.01
44 45 7.573968 ACATTGACAAAAGTTCTAAGAGCTT 57.426 32.000 0.00 0.00 34.73 3.74
45 46 7.573968 AACATTGACAAAAGTTCTAAGAGCT 57.426 32.000 0.00 0.00 0.00 4.09
46 47 7.702348 ACAAACATTGACAAAAGTTCTAAGAGC 59.298 33.333 9.09 0.00 0.00 4.09
47 48 9.226345 GACAAACATTGACAAAAGTTCTAAGAG 57.774 33.333 9.09 1.55 0.00 2.85
48 49 8.735315 TGACAAACATTGACAAAAGTTCTAAGA 58.265 29.630 9.09 0.00 32.70 2.10
49 50 8.798153 GTGACAAACATTGACAAAAGTTCTAAG 58.202 33.333 9.09 4.52 37.10 2.18
50 51 8.300286 TGTGACAAACATTGACAAAAGTTCTAA 58.700 29.630 9.09 0.00 37.10 2.10
51 52 7.821652 TGTGACAAACATTGACAAAAGTTCTA 58.178 30.769 9.09 0.00 37.10 2.10
52 53 6.686630 TGTGACAAACATTGACAAAAGTTCT 58.313 32.000 9.09 0.50 37.10 3.01
53 54 6.942886 TGTGACAAACATTGACAAAAGTTC 57.057 33.333 9.09 0.67 37.10 3.01
54 55 7.721286 TTTGTGACAAACATTGACAAAAGTT 57.279 28.000 6.66 0.00 38.99 2.66
55 56 7.721286 TTTTGTGACAAACATTGACAAAAGT 57.279 28.000 10.72 0.00 39.92 2.66
57 58 7.953158 TCTTTTGTGACAAACATTGACAAAA 57.047 28.000 10.72 15.77 41.24 2.44
58 59 7.953158 TTCTTTTGTGACAAACATTGACAAA 57.047 28.000 10.72 0.00 38.99 2.83
59 60 8.545229 AATTCTTTTGTGACAAACATTGACAA 57.455 26.923 10.72 0.00 38.99 3.18
60 61 8.545229 AAATTCTTTTGTGACAAACATTGACA 57.455 26.923 10.72 0.00 38.99 3.58
61 62 8.655092 TGAAATTCTTTTGTGACAAACATTGAC 58.345 29.630 10.72 8.16 38.99 3.18
62 63 8.768957 TGAAATTCTTTTGTGACAAACATTGA 57.231 26.923 10.72 4.46 38.99 2.57
63 64 8.871862 TCTGAAATTCTTTTGTGACAAACATTG 58.128 29.630 10.72 2.18 38.99 2.82
64 65 9.603921 ATCTGAAATTCTTTTGTGACAAACATT 57.396 25.926 10.72 6.84 38.99 2.71
65 66 9.603921 AATCTGAAATTCTTTTGTGACAAACAT 57.396 25.926 10.72 0.74 38.99 2.71
66 67 9.434420 AAATCTGAAATTCTTTTGTGACAAACA 57.566 25.926 10.72 2.89 36.85 2.83
100 101 4.249661 GGTGAACAGCAAAACAGGAAAAA 58.750 39.130 0.00 0.00 0.00 1.94
101 102 3.368948 GGGTGAACAGCAAAACAGGAAAA 60.369 43.478 6.35 0.00 0.00 2.29
102 103 2.167487 GGGTGAACAGCAAAACAGGAAA 59.833 45.455 6.35 0.00 0.00 3.13
103 104 1.754226 GGGTGAACAGCAAAACAGGAA 59.246 47.619 6.35 0.00 0.00 3.36
104 105 1.341482 TGGGTGAACAGCAAAACAGGA 60.341 47.619 6.35 0.00 0.00 3.86
105 106 1.110442 TGGGTGAACAGCAAAACAGG 58.890 50.000 6.35 0.00 0.00 4.00
106 107 2.813061 CTTGGGTGAACAGCAAAACAG 58.187 47.619 6.35 0.00 0.00 3.16
107 108 1.134848 GCTTGGGTGAACAGCAAAACA 60.135 47.619 6.35 0.00 0.00 2.83
108 109 1.136891 AGCTTGGGTGAACAGCAAAAC 59.863 47.619 6.35 0.00 0.00 2.43
109 110 1.408702 GAGCTTGGGTGAACAGCAAAA 59.591 47.619 6.35 0.03 0.00 2.44
110 111 1.032014 GAGCTTGGGTGAACAGCAAA 58.968 50.000 6.35 0.35 0.00 3.68
111 112 0.106769 TGAGCTTGGGTGAACAGCAA 60.107 50.000 6.35 0.00 0.00 3.91
112 113 0.111061 ATGAGCTTGGGTGAACAGCA 59.889 50.000 6.35 0.00 0.00 4.41
113 114 1.251251 AATGAGCTTGGGTGAACAGC 58.749 50.000 0.00 0.00 0.00 4.40
114 115 2.886523 TCAAATGAGCTTGGGTGAACAG 59.113 45.455 0.00 0.00 0.00 3.16
115 116 2.886523 CTCAAATGAGCTTGGGTGAACA 59.113 45.455 0.00 0.00 35.13 3.18
116 117 3.565905 CTCAAATGAGCTTGGGTGAAC 57.434 47.619 0.00 0.00 35.13 3.18
127 128 0.677731 TTGGCCCGAGCTCAAATGAG 60.678 55.000 15.40 6.05 44.75 2.90
128 129 0.677731 CTTGGCCCGAGCTCAAATGA 60.678 55.000 15.40 0.00 39.73 2.57
129 130 0.677731 TCTTGGCCCGAGCTCAAATG 60.678 55.000 15.40 0.00 39.73 2.32
130 131 0.038166 TTCTTGGCCCGAGCTCAAAT 59.962 50.000 15.40 0.00 39.73 2.32
131 132 0.179004 TTTCTTGGCCCGAGCTCAAA 60.179 50.000 15.40 0.86 39.73 2.69
132 133 0.889186 GTTTCTTGGCCCGAGCTCAA 60.889 55.000 15.40 0.00 39.73 3.02
133 134 1.302511 GTTTCTTGGCCCGAGCTCA 60.303 57.895 15.40 0.00 39.73 4.26
134 135 1.003233 AGTTTCTTGGCCCGAGCTC 60.003 57.895 2.73 2.73 39.73 4.09
135 136 1.003233 GAGTTTCTTGGCCCGAGCT 60.003 57.895 0.00 0.00 39.73 4.09
136 137 2.041115 GGAGTTTCTTGGCCCGAGC 61.041 63.158 0.00 0.00 38.76 5.03
137 138 0.955919 GTGGAGTTTCTTGGCCCGAG 60.956 60.000 0.00 0.00 0.00 4.63
138 139 1.072505 GTGGAGTTTCTTGGCCCGA 59.927 57.895 0.00 0.00 0.00 5.14
139 140 0.609131 ATGTGGAGTTTCTTGGCCCG 60.609 55.000 0.00 0.00 0.00 6.13
140 141 1.177401 GATGTGGAGTTTCTTGGCCC 58.823 55.000 0.00 0.00 0.00 5.80
141 142 1.177401 GGATGTGGAGTTTCTTGGCC 58.823 55.000 0.00 0.00 0.00 5.36
142 143 1.177401 GGGATGTGGAGTTTCTTGGC 58.823 55.000 0.00 0.00 0.00 4.52
143 144 2.584835 TGGGATGTGGAGTTTCTTGG 57.415 50.000 0.00 0.00 0.00 3.61
144 145 3.828451 ACAATGGGATGTGGAGTTTCTTG 59.172 43.478 0.00 0.00 30.82 3.02
145 146 4.082125 GACAATGGGATGTGGAGTTTCTT 58.918 43.478 0.00 0.00 32.57 2.52
146 147 3.074390 TGACAATGGGATGTGGAGTTTCT 59.926 43.478 0.00 0.00 32.57 2.52
147 148 3.420893 TGACAATGGGATGTGGAGTTTC 58.579 45.455 0.00 0.00 32.57 2.78
148 149 3.524095 TGACAATGGGATGTGGAGTTT 57.476 42.857 0.00 0.00 32.57 2.66
149 150 3.181429 ACTTGACAATGGGATGTGGAGTT 60.181 43.478 0.00 0.00 32.57 3.01
150 151 2.376518 ACTTGACAATGGGATGTGGAGT 59.623 45.455 0.00 0.00 32.57 3.85
151 152 3.077484 ACTTGACAATGGGATGTGGAG 57.923 47.619 0.00 0.00 32.57 3.86
152 153 3.587061 AGTACTTGACAATGGGATGTGGA 59.413 43.478 0.00 0.00 32.57 4.02
153 154 3.955471 AGTACTTGACAATGGGATGTGG 58.045 45.455 0.00 0.00 32.57 4.17
154 155 5.964958 AAAGTACTTGACAATGGGATGTG 57.035 39.130 9.34 0.00 32.57 3.21
155 156 7.122650 CCATAAAAGTACTTGACAATGGGATGT 59.877 37.037 20.61 0.00 35.90 3.06
156 157 7.339212 TCCATAAAAGTACTTGACAATGGGATG 59.661 37.037 24.31 12.90 34.66 3.51
157 158 7.410174 TCCATAAAAGTACTTGACAATGGGAT 58.590 34.615 24.31 2.41 34.66 3.85
158 159 6.785076 TCCATAAAAGTACTTGACAATGGGA 58.215 36.000 24.31 16.44 34.66 4.37
159 160 6.404734 GCTCCATAAAAGTACTTGACAATGGG 60.405 42.308 24.31 19.18 34.66 4.00
160 161 6.375455 AGCTCCATAAAAGTACTTGACAATGG 59.625 38.462 21.53 21.53 35.10 3.16
183 184 8.588789 ACAACGTTTAAAGAACAATAACAAAGC 58.411 29.630 0.00 0.00 0.00 3.51
194 195 8.845942 ATTTCCTACAACAACGTTTAAAGAAC 57.154 30.769 0.00 0.00 0.00 3.01
262 264 9.952188 AAGTAGAAAGCTTAAACATCTCAAAAC 57.048 29.630 0.00 0.00 0.00 2.43
285 287 8.557029 CACGAATACTCTAAAGGAACAAAAAGT 58.443 33.333 0.00 0.00 0.00 2.66
286 288 8.015658 CCACGAATACTCTAAAGGAACAAAAAG 58.984 37.037 0.00 0.00 0.00 2.27
300 315 3.678056 TTTCAGTGCCACGAATACTCT 57.322 42.857 0.00 0.00 0.00 3.24
449 465 3.940221 GCTCACTTGCAGATCTCTGAAAT 59.060 43.478 11.34 0.00 46.59 2.17
646 667 3.381983 TGGGCGTGAGATGCTCGT 61.382 61.111 0.00 0.00 31.85 4.18
712 734 0.385974 CGTGCTTGGTTGTAGCTTGC 60.386 55.000 0.00 0.00 39.38 4.01
851 873 1.869754 CGCATCGGGTATGACTGGAAG 60.870 57.143 0.00 0.00 37.86 3.46
852 874 0.104120 CGCATCGGGTATGACTGGAA 59.896 55.000 0.00 0.00 37.86 3.53
956 978 3.900892 ACGCCGCCGACTAGATGG 61.901 66.667 0.00 0.00 38.29 3.51
984 1006 3.390521 ATCTCGCCCAAGTCGCCA 61.391 61.111 0.00 0.00 0.00 5.69
1266 1288 1.081556 TTGTTCGACGCGGATCATGG 61.082 55.000 12.47 0.00 0.00 3.66
1274 1296 0.179250 CCTCACAATTGTTCGACGCG 60.179 55.000 8.77 3.53 0.00 6.01
1360 1382 6.680625 GCCTCATATTTTGACACGAGAGAGTA 60.681 42.308 0.00 0.00 34.22 2.59
1477 1500 2.115343 TACATGGTTTGCGCCATACA 57.885 45.000 4.18 0.00 46.71 2.29
1479 1502 2.924421 TGATACATGGTTTGCGCCATA 58.076 42.857 4.18 0.00 46.71 2.74
1483 1506 4.552166 ACTATTGATACATGGTTTGCGC 57.448 40.909 0.00 0.00 0.00 6.09
1484 1507 8.128582 ACAATTACTATTGATACATGGTTTGCG 58.871 33.333 0.00 0.00 43.12 4.85
1485 1508 9.801873 AACAATTACTATTGATACATGGTTTGC 57.198 29.630 0.00 0.00 43.12 3.68
1578 1669 9.770097 CCATTATCTCTAACAGAAAGCTAATCA 57.230 33.333 0.00 0.00 33.62 2.57
1637 1728 4.141711 TGAACACAGCTCTCCAACTTACTT 60.142 41.667 0.00 0.00 0.00 2.24
1638 1729 3.388024 TGAACACAGCTCTCCAACTTACT 59.612 43.478 0.00 0.00 0.00 2.24
1639 1730 3.728845 TGAACACAGCTCTCCAACTTAC 58.271 45.455 0.00 0.00 0.00 2.34
1640 1731 4.040339 TCATGAACACAGCTCTCCAACTTA 59.960 41.667 0.00 0.00 0.00 2.24
1810 1905 5.453567 AGCCAAGAACAAACCTGAATAAC 57.546 39.130 0.00 0.00 0.00 1.89
1913 2008 5.662657 TCAGAACCATCCAGACAAGATATGA 59.337 40.000 0.00 0.00 0.00 2.15
1999 2102 8.514330 TTTTGCTACAGGAATAACCGAATAAT 57.486 30.769 0.00 0.00 44.74 1.28
2004 2107 4.901868 ACTTTTGCTACAGGAATAACCGA 58.098 39.130 0.00 0.00 44.74 4.69
2005 2108 5.411669 AGAACTTTTGCTACAGGAATAACCG 59.588 40.000 0.00 0.00 44.74 4.44
2006 2109 6.819397 AGAACTTTTGCTACAGGAATAACC 57.181 37.500 0.00 0.00 39.35 2.85
2007 2110 9.608617 GTAAAGAACTTTTGCTACAGGAATAAC 57.391 33.333 5.14 0.00 34.23 1.89
2008 2111 9.569122 AGTAAAGAACTTTTGCTACAGGAATAA 57.431 29.630 5.14 0.00 33.35 1.40
2009 2112 9.216117 GAGTAAAGAACTTTTGCTACAGGAATA 57.784 33.333 5.14 0.00 39.07 1.75
2010 2113 7.719633 TGAGTAAAGAACTTTTGCTACAGGAAT 59.280 33.333 5.14 0.00 39.07 3.01
2011 2114 7.012044 GTGAGTAAAGAACTTTTGCTACAGGAA 59.988 37.037 5.14 0.00 39.07 3.36
2190 2294 7.050970 AGACTGTCAGATTAGTACAACAACA 57.949 36.000 10.88 0.00 0.00 3.33
2228 2332 1.963515 CCAGAAGTGGTTTTTCCCCAG 59.036 52.381 0.00 0.00 39.30 4.45
2433 2538 7.037153 AGTGTGGGTATAGGGAAAATAGAAACA 60.037 37.037 0.00 0.00 0.00 2.83
2715 2820 4.685169 AGGATTGAAATACAACTGCACG 57.315 40.909 0.00 0.00 41.52 5.34
3033 3153 7.156000 GGTAGAGCCTAATCCAGTAATTCTTC 58.844 42.308 0.00 0.00 0.00 2.87
3251 7190 3.698029 GCAACACTATACCATGCCTTG 57.302 47.619 0.00 0.00 0.00 3.61
3400 7339 9.705103 AGATCCTATGAAAATCCTTTGAATCAA 57.295 29.630 0.00 0.00 0.00 2.57
3401 7340 9.705103 AAGATCCTATGAAAATCCTTTGAATCA 57.295 29.630 0.00 0.00 0.00 2.57
3404 7343 8.752187 CCAAAGATCCTATGAAAATCCTTTGAA 58.248 33.333 0.00 0.00 32.00 2.69
3405 7344 8.115384 TCCAAAGATCCTATGAAAATCCTTTGA 58.885 33.333 0.00 0.00 32.00 2.69
3406 7345 8.297470 TCCAAAGATCCTATGAAAATCCTTTG 57.703 34.615 0.00 0.00 0.00 2.77
3407 7346 7.562821 CCTCCAAAGATCCTATGAAAATCCTTT 59.437 37.037 0.00 0.00 0.00 3.11
3408 7347 7.065504 CCTCCAAAGATCCTATGAAAATCCTT 58.934 38.462 0.00 0.00 0.00 3.36
3410 7349 6.605119 TCCTCCAAAGATCCTATGAAAATCC 58.395 40.000 0.00 0.00 0.00 3.01
3412 7351 9.804977 CTAATCCTCCAAAGATCCTATGAAAAT 57.195 33.333 0.00 0.00 0.00 1.82
3413 7352 9.003145 TCTAATCCTCCAAAGATCCTATGAAAA 57.997 33.333 0.00 0.00 0.00 2.29
3414 7353 8.567198 TCTAATCCTCCAAAGATCCTATGAAA 57.433 34.615 0.00 0.00 0.00 2.69
3461 7400 5.968387 ATCCTACGAATCAAACGATCAAC 57.032 39.130 0.00 0.00 34.70 3.18
3462 7401 6.103330 TCAATCCTACGAATCAAACGATCAA 58.897 36.000 0.00 0.00 34.70 2.57
3463 7402 5.656480 TCAATCCTACGAATCAAACGATCA 58.344 37.500 0.00 0.00 34.70 2.92
3464 7403 6.583912 TTCAATCCTACGAATCAAACGATC 57.416 37.500 0.00 0.00 34.70 3.69
3465 7404 6.202954 GGATTCAATCCTACGAATCAAACGAT 59.797 38.462 9.43 0.00 46.12 3.73
3466 7405 5.522460 GGATTCAATCCTACGAATCAAACGA 59.478 40.000 9.43 0.00 46.12 3.85
3467 7406 5.738370 GGATTCAATCCTACGAATCAAACG 58.262 41.667 9.43 0.00 46.12 3.60
3523 7462 9.967451 TGGATGTTAGAATTCCTGTAAAATGTA 57.033 29.630 0.65 0.00 0.00 2.29
3524 7463 8.739972 GTGGATGTTAGAATTCCTGTAAAATGT 58.260 33.333 0.65 0.00 0.00 2.71
3525 7464 8.960591 AGTGGATGTTAGAATTCCTGTAAAATG 58.039 33.333 0.65 0.00 0.00 2.32
3526 7465 9.178758 GAGTGGATGTTAGAATTCCTGTAAAAT 57.821 33.333 0.65 0.00 0.00 1.82
3527 7466 7.610305 GGAGTGGATGTTAGAATTCCTGTAAAA 59.390 37.037 0.65 0.00 0.00 1.52
3528 7467 7.110155 GGAGTGGATGTTAGAATTCCTGTAAA 58.890 38.462 0.65 0.00 0.00 2.01
3529 7468 6.214615 TGGAGTGGATGTTAGAATTCCTGTAA 59.785 38.462 0.65 0.00 0.00 2.41
3530 7469 5.724370 TGGAGTGGATGTTAGAATTCCTGTA 59.276 40.000 0.65 0.00 0.00 2.74
3531 7470 4.536090 TGGAGTGGATGTTAGAATTCCTGT 59.464 41.667 0.65 0.00 0.00 4.00
3532 7471 5.102953 TGGAGTGGATGTTAGAATTCCTG 57.897 43.478 0.65 0.00 0.00 3.86
3533 7472 5.501156 GTTGGAGTGGATGTTAGAATTCCT 58.499 41.667 0.65 0.00 0.00 3.36
3534 7473 4.640647 GGTTGGAGTGGATGTTAGAATTCC 59.359 45.833 0.65 0.00 0.00 3.01
3535 7474 5.501156 AGGTTGGAGTGGATGTTAGAATTC 58.499 41.667 0.00 0.00 0.00 2.17
3536 7475 5.251700 AGAGGTTGGAGTGGATGTTAGAATT 59.748 40.000 0.00 0.00 0.00 2.17
3537 7476 4.785376 AGAGGTTGGAGTGGATGTTAGAAT 59.215 41.667 0.00 0.00 0.00 2.40
3538 7477 4.168101 AGAGGTTGGAGTGGATGTTAGAA 58.832 43.478 0.00 0.00 0.00 2.10
3539 7478 3.791320 AGAGGTTGGAGTGGATGTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
3540 7479 4.256920 CAAGAGGTTGGAGTGGATGTTAG 58.743 47.826 0.00 0.00 0.00 2.34
3541 7480 4.286297 CAAGAGGTTGGAGTGGATGTTA 57.714 45.455 0.00 0.00 0.00 2.41
3542 7481 3.146104 CAAGAGGTTGGAGTGGATGTT 57.854 47.619 0.00 0.00 0.00 2.71
3543 7482 2.867109 CAAGAGGTTGGAGTGGATGT 57.133 50.000 0.00 0.00 0.00 3.06
3552 7491 5.279156 CAAAGGATTTCTTCCAAGAGGTTGG 60.279 44.000 0.00 0.00 45.96 3.77
3562 7501 4.988540 CGGGAAAAACAAAGGATTTCTTCC 59.011 41.667 0.00 0.00 45.85 3.46
3563 7502 5.462068 CACGGGAAAAACAAAGGATTTCTTC 59.538 40.000 0.00 0.00 35.03 2.87
3564 7503 5.128008 TCACGGGAAAAACAAAGGATTTCTT 59.872 36.000 0.00 0.00 35.03 2.52
3565 7504 4.647399 TCACGGGAAAAACAAAGGATTTCT 59.353 37.500 0.00 0.00 35.03 2.52
3566 7505 4.743151 GTCACGGGAAAAACAAAGGATTTC 59.257 41.667 0.00 0.00 35.03 2.17
3567 7506 4.160626 TGTCACGGGAAAAACAAAGGATTT 59.839 37.500 0.00 0.00 40.26 2.17
3568 7507 3.702045 TGTCACGGGAAAAACAAAGGATT 59.298 39.130 0.00 0.00 0.00 3.01
3569 7508 3.067601 GTGTCACGGGAAAAACAAAGGAT 59.932 43.478 0.00 0.00 0.00 3.24
3570 7509 2.424246 GTGTCACGGGAAAAACAAAGGA 59.576 45.455 0.00 0.00 0.00 3.36
3571 7510 2.164624 TGTGTCACGGGAAAAACAAAGG 59.835 45.455 0.00 0.00 0.00 3.11
3572 7511 3.495670 TGTGTCACGGGAAAAACAAAG 57.504 42.857 0.00 0.00 0.00 2.77
3573 7512 3.936372 TTGTGTCACGGGAAAAACAAA 57.064 38.095 8.85 0.00 0.00 2.83
3574 7513 3.444034 TGATTGTGTCACGGGAAAAACAA 59.556 39.130 12.58 12.58 31.63 2.83
3575 7514 3.017442 TGATTGTGTCACGGGAAAAACA 58.983 40.909 0.00 0.00 0.00 2.83
3576 7515 3.701532 TGATTGTGTCACGGGAAAAAC 57.298 42.857 0.00 0.00 0.00 2.43
3577 7516 4.082190 TGTTTGATTGTGTCACGGGAAAAA 60.082 37.500 0.00 0.00 36.32 1.94
3578 7517 3.444034 TGTTTGATTGTGTCACGGGAAAA 59.556 39.130 0.00 0.00 36.32 2.29
3579 7518 3.017442 TGTTTGATTGTGTCACGGGAAA 58.983 40.909 0.00 0.00 36.32 3.13
3580 7519 2.644676 TGTTTGATTGTGTCACGGGAA 58.355 42.857 0.00 0.00 36.32 3.97
3581 7520 2.333688 TGTTTGATTGTGTCACGGGA 57.666 45.000 0.00 0.00 36.32 5.14
3582 7521 3.112580 GTTTGTTTGATTGTGTCACGGG 58.887 45.455 0.00 0.00 36.32 5.28
3583 7522 4.027572 AGTTTGTTTGATTGTGTCACGG 57.972 40.909 0.00 0.00 36.32 4.94
3584 7523 4.495472 GTGAGTTTGTTTGATTGTGTCACG 59.505 41.667 0.00 0.00 36.32 4.35
3585 7524 5.398169 TGTGAGTTTGTTTGATTGTGTCAC 58.602 37.500 0.00 0.00 36.32 3.67
3586 7525 5.635417 TGTGAGTTTGTTTGATTGTGTCA 57.365 34.783 0.00 0.00 34.25 3.58
3587 7526 6.942886 TTTGTGAGTTTGTTTGATTGTGTC 57.057 33.333 0.00 0.00 0.00 3.67
3588 7527 6.534793 GGATTTGTGAGTTTGTTTGATTGTGT 59.465 34.615 0.00 0.00 0.00 3.72
3589 7528 6.757947 AGGATTTGTGAGTTTGTTTGATTGTG 59.242 34.615 0.00 0.00 0.00 3.33
3590 7529 6.877236 AGGATTTGTGAGTTTGTTTGATTGT 58.123 32.000 0.00 0.00 0.00 2.71
3593 7532 8.960591 CCTATAGGATTTGTGAGTTTGTTTGAT 58.039 33.333 14.11 0.00 37.39 2.57
3594 7533 7.393234 CCCTATAGGATTTGTGAGTTTGTTTGA 59.607 37.037 21.07 0.00 38.24 2.69
3595 7534 7.393234 TCCCTATAGGATTTGTGAGTTTGTTTG 59.607 37.037 21.07 0.00 40.93 2.93
3596 7535 7.466804 TCCCTATAGGATTTGTGAGTTTGTTT 58.533 34.615 21.07 0.00 40.93 2.83
3597 7536 7.027874 TCCCTATAGGATTTGTGAGTTTGTT 57.972 36.000 21.07 0.00 40.93 2.83
3598 7537 6.636454 TCCCTATAGGATTTGTGAGTTTGT 57.364 37.500 21.07 0.00 40.93 2.83
3612 7551 4.627255 GCATGTCCATTGGATCCCTATAGG 60.627 50.000 12.27 12.27 32.73 2.57
3613 7552 4.521146 GCATGTCCATTGGATCCCTATAG 58.479 47.826 9.90 0.00 32.73 1.31
3614 7553 3.266772 GGCATGTCCATTGGATCCCTATA 59.733 47.826 9.90 0.00 32.73 1.31
3615 7554 2.042162 GGCATGTCCATTGGATCCCTAT 59.958 50.000 9.90 0.00 32.73 2.57
3616 7555 1.425066 GGCATGTCCATTGGATCCCTA 59.575 52.381 9.90 0.00 32.73 3.53
3617 7556 0.186873 GGCATGTCCATTGGATCCCT 59.813 55.000 9.90 0.00 32.73 4.20
3618 7557 0.106066 TGGCATGTCCATTGGATCCC 60.106 55.000 9.90 7.65 40.72 3.85
3619 7558 3.518766 TGGCATGTCCATTGGATCC 57.481 52.632 9.01 4.20 40.72 3.36
3628 7567 2.077687 AGGATTGGAATGGCATGTCC 57.922 50.000 16.85 16.85 0.00 4.02
3629 7568 2.549754 CGTAGGATTGGAATGGCATGTC 59.450 50.000 0.00 0.82 0.00 3.06
3630 7569 2.092429 ACGTAGGATTGGAATGGCATGT 60.092 45.455 0.00 0.00 0.00 3.21
3631 7570 2.575532 ACGTAGGATTGGAATGGCATG 58.424 47.619 0.00 0.00 0.00 4.06
3632 7571 3.297134 AACGTAGGATTGGAATGGCAT 57.703 42.857 0.00 0.00 0.00 4.40
3633 7572 2.799126 AACGTAGGATTGGAATGGCA 57.201 45.000 0.00 0.00 0.00 4.92
3634 7573 3.694566 AGAAAACGTAGGATTGGAATGGC 59.305 43.478 0.00 0.00 0.00 4.40
3635 7574 5.186198 AGAGAAAACGTAGGATTGGAATGG 58.814 41.667 0.00 0.00 0.00 3.16
3636 7575 8.438676 AATAGAGAAAACGTAGGATTGGAATG 57.561 34.615 0.00 0.00 0.00 2.67
3637 7576 7.715686 GGAATAGAGAAAACGTAGGATTGGAAT 59.284 37.037 0.00 0.00 0.00 3.01
3638 7577 7.046033 GGAATAGAGAAAACGTAGGATTGGAA 58.954 38.462 0.00 0.00 0.00 3.53
3639 7578 6.383147 AGGAATAGAGAAAACGTAGGATTGGA 59.617 38.462 0.00 0.00 0.00 3.53
3640 7579 6.480320 CAGGAATAGAGAAAACGTAGGATTGG 59.520 42.308 0.00 0.00 0.00 3.16
3641 7580 7.010552 CACAGGAATAGAGAAAACGTAGGATTG 59.989 40.741 0.00 0.00 0.00 2.67
3642 7581 7.042335 CACAGGAATAGAGAAAACGTAGGATT 58.958 38.462 0.00 0.00 0.00 3.01
3643 7582 6.154706 ACACAGGAATAGAGAAAACGTAGGAT 59.845 38.462 0.00 0.00 0.00 3.24
3644 7583 5.479375 ACACAGGAATAGAGAAAACGTAGGA 59.521 40.000 0.00 0.00 0.00 2.94
3645 7584 5.721232 ACACAGGAATAGAGAAAACGTAGG 58.279 41.667 0.00 0.00 0.00 3.18
3646 7585 7.653767 AAACACAGGAATAGAGAAAACGTAG 57.346 36.000 0.00 0.00 0.00 3.51
3647 7586 8.339714 CAAAAACACAGGAATAGAGAAAACGTA 58.660 33.333 0.00 0.00 0.00 3.57
3648 7587 6.937436 AAAACACAGGAATAGAGAAAACGT 57.063 33.333 0.00 0.00 0.00 3.99
3649 7588 6.142320 GCAAAAACACAGGAATAGAGAAAACG 59.858 38.462 0.00 0.00 0.00 3.60
3650 7589 6.978080 TGCAAAAACACAGGAATAGAGAAAAC 59.022 34.615 0.00 0.00 0.00 2.43
3651 7590 7.106439 TGCAAAAACACAGGAATAGAGAAAA 57.894 32.000 0.00 0.00 0.00 2.29
3652 7591 6.707440 TGCAAAAACACAGGAATAGAGAAA 57.293 33.333 0.00 0.00 0.00 2.52
3653 7592 6.707440 TTGCAAAAACACAGGAATAGAGAA 57.293 33.333 0.00 0.00 0.00 2.87
3654 7593 6.071952 GGATTGCAAAAACACAGGAATAGAGA 60.072 38.462 1.71 0.00 0.00 3.10
3655 7594 6.071728 AGGATTGCAAAAACACAGGAATAGAG 60.072 38.462 1.71 0.00 0.00 2.43
3656 7595 5.774690 AGGATTGCAAAAACACAGGAATAGA 59.225 36.000 1.71 0.00 0.00 1.98
3657 7596 6.029346 AGGATTGCAAAAACACAGGAATAG 57.971 37.500 1.71 0.00 0.00 1.73
3658 7597 7.395772 TCATAGGATTGCAAAAACACAGGAATA 59.604 33.333 1.71 0.00 0.00 1.75
3659 7598 4.961438 AGGATTGCAAAAACACAGGAAT 57.039 36.364 1.71 0.00 0.00 3.01
3660 7599 5.538053 TCATAGGATTGCAAAAACACAGGAA 59.462 36.000 1.71 0.00 0.00 3.36
3661 7600 5.076182 TCATAGGATTGCAAAAACACAGGA 58.924 37.500 1.71 0.00 0.00 3.86
3662 7601 5.389859 TCATAGGATTGCAAAAACACAGG 57.610 39.130 1.71 0.00 0.00 4.00
3663 7602 7.092079 TGATTCATAGGATTGCAAAAACACAG 58.908 34.615 1.71 0.00 0.00 3.66
3664 7603 6.990798 TGATTCATAGGATTGCAAAAACACA 58.009 32.000 1.71 0.00 0.00 3.72
3665 7604 7.887996 TTGATTCATAGGATTGCAAAAACAC 57.112 32.000 1.71 0.00 0.00 3.32
3666 7605 8.937884 CATTTGATTCATAGGATTGCAAAAACA 58.062 29.630 1.71 0.00 0.00 2.83
3667 7606 7.906527 GCATTTGATTCATAGGATTGCAAAAAC 59.093 33.333 1.71 0.00 0.00 2.43
3668 7607 7.825270 AGCATTTGATTCATAGGATTGCAAAAA 59.175 29.630 1.71 0.00 0.00 1.94
3669 7608 7.279090 CAGCATTTGATTCATAGGATTGCAAAA 59.721 33.333 1.71 0.00 0.00 2.44
3670 7609 6.759356 CAGCATTTGATTCATAGGATTGCAAA 59.241 34.615 1.71 0.00 0.00 3.68
3671 7610 6.097129 TCAGCATTTGATTCATAGGATTGCAA 59.903 34.615 0.00 0.00 0.00 4.08
3672 7611 5.595133 TCAGCATTTGATTCATAGGATTGCA 59.405 36.000 0.00 0.00 0.00 4.08
3673 7612 6.080648 TCAGCATTTGATTCATAGGATTGC 57.919 37.500 0.00 0.00 0.00 3.56
3674 7613 6.641314 GCTTCAGCATTTGATTCATAGGATTG 59.359 38.462 0.00 0.00 41.59 2.67
3675 7614 6.239232 GGCTTCAGCATTTGATTCATAGGATT 60.239 38.462 0.30 0.00 44.36 3.01
3676 7615 5.243283 GGCTTCAGCATTTGATTCATAGGAT 59.757 40.000 0.30 0.00 44.36 3.24
3677 7616 4.581824 GGCTTCAGCATTTGATTCATAGGA 59.418 41.667 0.30 0.00 44.36 2.94
3678 7617 4.340097 TGGCTTCAGCATTTGATTCATAGG 59.660 41.667 0.30 0.00 44.36 2.57
3679 7618 5.279384 GTGGCTTCAGCATTTGATTCATAG 58.721 41.667 0.30 0.00 44.36 2.23
3680 7619 4.098349 GGTGGCTTCAGCATTTGATTCATA 59.902 41.667 0.30 0.00 44.36 2.15
3681 7620 3.118884 GGTGGCTTCAGCATTTGATTCAT 60.119 43.478 0.30 0.00 44.36 2.57
3682 7621 2.231964 GGTGGCTTCAGCATTTGATTCA 59.768 45.455 0.30 0.00 44.36 2.57
3683 7622 2.494870 AGGTGGCTTCAGCATTTGATTC 59.505 45.455 0.30 0.00 44.36 2.52
3684 7623 2.532843 AGGTGGCTTCAGCATTTGATT 58.467 42.857 0.30 0.00 44.36 2.57
3685 7624 2.226962 AGGTGGCTTCAGCATTTGAT 57.773 45.000 0.30 0.00 44.36 2.57
3686 7625 2.877097 TAGGTGGCTTCAGCATTTGA 57.123 45.000 0.30 0.00 44.36 2.69
3687 7626 3.066342 CAGATAGGTGGCTTCAGCATTTG 59.934 47.826 0.30 0.00 44.36 2.32
3688 7627 3.285484 CAGATAGGTGGCTTCAGCATTT 58.715 45.455 0.30 0.00 44.36 2.32
3689 7628 2.240667 ACAGATAGGTGGCTTCAGCATT 59.759 45.455 0.30 0.00 44.36 3.56
4258 8621 2.102588 AGGAACTACTTCAACGTGCTGT 59.897 45.455 0.00 0.00 36.02 4.40
4424 8818 2.350514 GCCTGAAGAGCCAGCTGT 59.649 61.111 13.81 0.00 32.97 4.40
4441 8835 1.002868 CCTCAACCCTGCTCTGTGG 60.003 63.158 0.00 0.00 0.00 4.17
4726 9122 5.571658 GCATAGCCTGTACCTAGCCAATATT 60.572 44.000 0.00 0.00 0.00 1.28
4808 9209 5.088680 ACCATTTGTAAGAAATGCATGGG 57.911 39.130 0.00 0.00 36.56 4.00
5645 10050 3.434299 ACAAACTTTCTGCCCGTATAACG 59.566 43.478 0.00 0.00 42.11 3.18
5838 10249 6.655003 ACAGTGGTCATTGGATAAACAACTAG 59.345 38.462 0.00 0.00 32.39 2.57
5841 10252 5.699839 GACAGTGGTCATTGGATAAACAAC 58.300 41.667 0.00 0.00 43.73 3.32
5899 10310 2.223782 GCTTTGCACATGACAGGACAAA 60.224 45.455 0.00 10.81 0.00 2.83
5914 10325 4.927425 ACATTTCATGAACAGATGCTTTGC 59.073 37.500 7.89 0.00 0.00 3.68
5977 10392 4.385310 GGGCCCTGTAAGAAGACATTACAT 60.385 45.833 17.04 0.00 41.10 2.29
6366 10793 7.039714 AGGAAGAAGGTTGGCTAAATAAAACTG 60.040 37.037 0.00 0.00 0.00 3.16
6368 10795 7.176865 AGAGGAAGAAGGTTGGCTAAATAAAAC 59.823 37.037 0.00 0.00 0.00 2.43
6553 10982 9.567776 TCAAGGATTCACTATAAAACAAGTCAA 57.432 29.630 0.00 0.00 0.00 3.18
6589 11018 7.977789 ATTCATGTGTGTGTGTATCAAAGTA 57.022 32.000 0.00 0.00 0.00 2.24
6599 11028 9.225201 GCATAAGTAATTATTCATGTGTGTGTG 57.775 33.333 0.00 0.00 0.00 3.82
7012 11448 7.602644 TCCTAATTCAAATATCATGAGCGTACC 59.397 37.037 0.09 0.00 0.00 3.34
7053 11489 3.305964 GCGCAGAGACGTATGCTTATTA 58.694 45.455 15.35 0.00 38.86 0.98
7124 11560 7.951530 TTATCATACACATGTCTGCACATAG 57.048 36.000 0.00 0.00 41.69 2.23
7293 11729 5.880054 ATGATTTCCTTCATTCGAAACGT 57.120 34.783 0.00 0.00 32.38 3.99
7303 11739 9.658799 CTCAAGTTACTTCTATGATTTCCTTCA 57.341 33.333 0.00 0.00 0.00 3.02
7314 11750 3.195825 ACGCAGGCTCAAGTTACTTCTAT 59.804 43.478 0.00 0.00 0.00 1.98
7421 11857 4.729868 ACCTGCAGAAATACAAGGAGTTT 58.270 39.130 17.39 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.