Multiple sequence alignment - TraesCS6D01G197800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G197800 chr6D 100.000 4558 0 0 1 4558 275679894 275675337 0.000000e+00 8418.0
1 TraesCS6D01G197800 chr6D 100.000 2039 0 0 6262 8300 275673633 275671595 0.000000e+00 3766.0
2 TraesCS6D01G197800 chr6D 100.000 1239 0 0 4873 6111 275675022 275673784 0.000000e+00 2289.0
3 TraesCS6D01G197800 chr6D 86.417 773 89 9 7485 8254 382030212 382030971 0.000000e+00 832.0
4 TraesCS6D01G197800 chr6D 80.977 389 41 11 3856 4236 57278671 57278308 2.280000e-70 278.0
5 TraesCS6D01G197800 chr6D 91.005 189 13 4 1 185 446603099 446602911 1.380000e-62 252.0
6 TraesCS6D01G197800 chr6B 95.420 4345 119 30 228 4519 437488235 437483918 0.000000e+00 6848.0
7 TraesCS6D01G197800 chr6B 96.448 1126 22 7 4873 5987 437483542 437482424 0.000000e+00 1842.0
8 TraesCS6D01G197800 chr6B 95.005 961 41 4 6301 7256 437480895 437479937 0.000000e+00 1502.0
9 TraesCS6D01G197800 chr6B 86.832 767 90 5 7486 8251 571076777 571077533 0.000000e+00 846.0
10 TraesCS6D01G197800 chr6B 87.334 679 75 5 7621 8298 144032608 144031940 0.000000e+00 767.0
11 TraesCS6D01G197800 chr6B 93.785 177 10 1 1 177 567282639 567282814 1.780000e-66 265.0
12 TraesCS6D01G197800 chr6B 86.498 237 31 1 7250 7485 144032865 144032629 8.260000e-65 259.0
13 TraesCS6D01G197800 chr6B 96.581 117 4 0 5979 6095 437481273 437481157 2.360000e-45 195.0
14 TraesCS6D01G197800 chr6B 82.550 149 24 2 6963 7110 437479993 437479846 6.760000e-26 130.0
15 TraesCS6D01G197800 chr6B 98.246 57 1 0 172 228 437488386 437488330 5.300000e-17 100.0
16 TraesCS6D01G197800 chr6A 91.810 4481 213 49 172 4555 396302838 396298415 0.000000e+00 6100.0
17 TraesCS6D01G197800 chr6A 92.536 978 48 8 6280 7256 396297178 396296225 0.000000e+00 1378.0
18 TraesCS6D01G197800 chr6A 93.681 633 29 4 5487 6108 396297847 396297215 0.000000e+00 937.0
19 TraesCS6D01G197800 chr6A 95.327 535 24 1 4874 5407 396298379 396297845 0.000000e+00 848.0
20 TraesCS6D01G197800 chr6A 84.945 817 101 12 7485 8300 524054768 524055563 0.000000e+00 808.0
21 TraesCS6D01G197800 chr6A 83.944 355 46 6 4094 4440 107616544 107616193 6.210000e-86 329.0
22 TraesCS6D01G197800 chr6A 80.556 432 63 10 4040 4458 571270707 571271130 6.250000e-81 313.0
23 TraesCS6D01G197800 chr6A 82.131 291 30 10 3671 3961 105043692 105043424 6.480000e-56 230.0
24 TraesCS6D01G197800 chr6A 83.200 125 21 0 6963 7087 396296281 396296157 1.890000e-21 115.0
25 TraesCS6D01G197800 chr6A 88.710 62 1 4 5434 5489 39440939 39440878 4.160000e-08 71.3
26 TraesCS6D01G197800 chr4D 93.798 1048 55 3 7253 8300 168837220 168836183 0.000000e+00 1567.0
27 TraesCS6D01G197800 chr4D 86.685 368 47 1 3564 3929 23281397 23281030 2.790000e-109 407.0
28 TraesCS6D01G197800 chr4D 94.706 170 9 0 1 170 398286063 398286232 1.780000e-66 265.0
29 TraesCS6D01G197800 chr4D 81.752 274 40 7 3992 4257 23281014 23280743 3.900000e-53 220.0
30 TraesCS6D01G197800 chrUn 93.651 819 31 5 7484 8300 89398436 89397637 0.000000e+00 1205.0
31 TraesCS6D01G197800 chrUn 96.610 236 8 0 7250 7485 89398706 89398471 7.810000e-105 392.0
32 TraesCS6D01G197800 chrUn 89.855 69 5 2 5145 5212 272886444 272886377 4.130000e-13 87.9
33 TraesCS6D01G197800 chrUn 89.855 69 5 2 5145 5212 299203898 299203965 4.130000e-13 87.9
34 TraesCS6D01G197800 chr5D 80.446 762 133 10 7485 8243 3563654 3564402 1.210000e-157 568.0
35 TraesCS6D01G197800 chr5D 82.070 541 70 7 7761 8299 436255235 436254720 3.560000e-118 436.0
36 TraesCS6D01G197800 chr5D 87.986 283 30 2 7489 7771 436255775 436255497 1.730000e-86 331.0
37 TraesCS6D01G197800 chr5D 80.928 388 41 11 3857 4236 459324102 459323740 8.210000e-70 276.0
38 TraesCS6D01G197800 chr5D 93.529 170 11 0 1 170 353958868 353959037 3.850000e-63 254.0
39 TraesCS6D01G197800 chr3D 86.957 368 46 1 3564 3929 44215467 44215834 5.990000e-111 412.0
40 TraesCS6D01G197800 chr3D 82.288 271 39 6 3992 4254 44215850 44216119 8.380000e-55 226.0
41 TraesCS6D01G197800 chr3D 89.831 59 3 3 5434 5489 68079979 68079921 1.160000e-08 73.1
42 TraesCS6D01G197800 chr3D 85.965 57 4 2 5434 5489 410519337 410519284 3.240000e-04 58.4
43 TraesCS6D01G197800 chr3D 85.000 60 4 3 5434 5489 68079938 68079996 1.000000e-03 56.5
44 TraesCS6D01G197800 chr2D 75.976 820 170 18 7485 8294 23300258 23299456 1.680000e-106 398.0
45 TraesCS6D01G197800 chr2D 94.220 173 10 0 1 173 587371635 587371463 1.780000e-66 265.0
46 TraesCS6D01G197800 chr2D 81.716 268 40 6 3992 4251 634883593 634883859 1.810000e-51 215.0
47 TraesCS6D01G197800 chr2D 85.567 194 23 5 7250 7440 472027829 472027638 1.830000e-46 198.0
48 TraesCS6D01G197800 chr3A 85.185 378 44 7 4094 4461 55056060 55055685 2.190000e-100 377.0
49 TraesCS6D01G197800 chr3A 81.609 435 59 8 4040 4461 91457598 91457172 2.870000e-89 340.0
50 TraesCS6D01G197800 chr3A 78.351 291 27 15 3671 3961 425601614 425601360 1.120000e-33 156.0
51 TraesCS6D01G197800 chr3A 89.855 69 5 2 5145 5212 93562265 93562332 4.130000e-13 87.9
52 TraesCS6D01G197800 chr3A 91.525 59 2 3 5434 5489 80090158 80090216 2.480000e-10 78.7
53 TraesCS6D01G197800 chr3A 84.848 66 5 3 5434 5495 80090199 80090135 2.500000e-05 62.1
54 TraesCS6D01G197800 chr1A 84.789 355 44 6 4094 4440 58236870 58236518 1.710000e-91 348.0
55 TraesCS6D01G197800 chr2A 76.295 637 132 12 7484 8118 25489136 25489755 1.040000e-83 322.0
56 TraesCS6D01G197800 chr7A 80.787 432 62 10 4040 4458 501091620 501092043 1.340000e-82 318.0
57 TraesCS6D01G197800 chr7A 85.714 56 4 2 5435 5489 492257317 492257265 1.000000e-03 56.5
58 TraesCS6D01G197800 chr4B 85.121 289 34 5 4109 4388 512662588 512662300 3.790000e-73 287.0
59 TraesCS6D01G197800 chr4B 81.443 291 32 10 3671 3961 471271068 471270800 1.400000e-52 219.0
60 TraesCS6D01G197800 chr4A 80.905 398 35 16 3565 3961 669814915 669815272 8.210000e-70 276.0
61 TraesCS6D01G197800 chr7D 94.737 171 8 1 1 170 188554585 188554415 1.780000e-66 265.0
62 TraesCS6D01G197800 chr7D 93.258 178 12 0 1 178 621163862 621164039 6.390000e-66 263.0
63 TraesCS6D01G197800 chr1D 94.253 174 9 1 1 173 445569707 445569880 1.780000e-66 265.0
64 TraesCS6D01G197800 chr1D 84.577 201 26 5 7243 7440 474134399 474134597 2.360000e-45 195.0
65 TraesCS6D01G197800 chr5B 93.678 174 10 1 1 173 520073013 520073186 8.260000e-65 259.0
66 TraesCS6D01G197800 chr1B 77.811 338 58 13 7252 7575 456749932 456749598 8.500000e-45 193.0
67 TraesCS6D01G197800 chr1B 81.223 229 36 7 7252 7476 59168706 59168931 2.380000e-40 178.0
68 TraesCS6D01G197800 chr7B 81.034 232 38 6 7250 7476 710493531 710493761 6.620000e-41 180.0
69 TraesCS6D01G197800 chr7B 84.783 138 16 3 3673 3808 116381198 116381064 5.230000e-27 134.0
70 TraesCS6D01G197800 chr2B 81.223 229 38 5 7252 7476 667277478 667277705 6.620000e-41 180.0
71 TraesCS6D01G197800 chr2B 87.500 56 3 2 5434 5488 720478090 720478142 2.500000e-05 62.1
72 TraesCS6D01G197800 chr3B 86.420 81 10 1 5133 5212 125857705 125857785 4.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G197800 chr6D 275671595 275679894 8299 True 4824.333333 8418 100.000000 1 8300 3 chr6D.!!$R3 8299
1 TraesCS6D01G197800 chr6D 382030212 382030971 759 False 832.000000 832 86.417000 7485 8254 1 chr6D.!!$F1 769
2 TraesCS6D01G197800 chr6B 437479846 437488386 8540 True 1769.500000 6848 94.041667 172 7256 6 chr6B.!!$R2 7084
3 TraesCS6D01G197800 chr6B 571076777 571077533 756 False 846.000000 846 86.832000 7486 8251 1 chr6B.!!$F2 765
4 TraesCS6D01G197800 chr6B 144031940 144032865 925 True 513.000000 767 86.916000 7250 8298 2 chr6B.!!$R1 1048
5 TraesCS6D01G197800 chr6A 396296157 396302838 6681 True 1875.600000 6100 91.310800 172 7256 5 chr6A.!!$R4 7084
6 TraesCS6D01G197800 chr6A 524054768 524055563 795 False 808.000000 808 84.945000 7485 8300 1 chr6A.!!$F1 815
7 TraesCS6D01G197800 chr4D 168836183 168837220 1037 True 1567.000000 1567 93.798000 7253 8300 1 chr4D.!!$R1 1047
8 TraesCS6D01G197800 chr4D 23280743 23281397 654 True 313.500000 407 84.218500 3564 4257 2 chr4D.!!$R2 693
9 TraesCS6D01G197800 chrUn 89397637 89398706 1069 True 798.500000 1205 95.130500 7250 8300 2 chrUn.!!$R2 1050
10 TraesCS6D01G197800 chr5D 3563654 3564402 748 False 568.000000 568 80.446000 7485 8243 1 chr5D.!!$F1 758
11 TraesCS6D01G197800 chr5D 436254720 436255775 1055 True 383.500000 436 85.028000 7489 8299 2 chr5D.!!$R2 810
12 TraesCS6D01G197800 chr3D 44215467 44216119 652 False 319.000000 412 84.622500 3564 4254 2 chr3D.!!$F2 690
13 TraesCS6D01G197800 chr2D 23299456 23300258 802 True 398.000000 398 75.976000 7485 8294 1 chr2D.!!$R1 809
14 TraesCS6D01G197800 chr2A 25489136 25489755 619 False 322.000000 322 76.295000 7484 8118 1 chr2A.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.099968 CAGATGGTGCATTTGAGGCG 59.900 55.000 0.00 0.00 28.98 5.52 F
154 155 0.179207 TTCGAGTACTGTAGCGCACG 60.179 55.000 11.47 5.37 0.00 5.34 F
1558 1725 1.064654 CTTTCGAAGCTTGGGCATAGC 59.935 52.381 2.10 2.22 41.70 2.97 F
2658 2850 1.063174 CTTGCTGCTACTTCAATCCGC 59.937 52.381 0.00 0.00 0.00 5.54 F
3399 3593 2.775911 TTCCAGTGAGCTGATTGAGG 57.224 50.000 0.00 0.00 45.28 3.86 F
3704 3913 2.825532 GGCTGCAAACCTTCAAATAGGA 59.174 45.455 0.50 0.00 38.73 2.94 F
4353 4573 3.774766 TCCTTTATAGGTCTCTTGCTGCA 59.225 43.478 0.00 0.00 42.60 4.41 F
5424 5675 0.113776 ACTCCCTCCGTGTAAGACCA 59.886 55.000 0.00 0.00 0.00 4.02 F
6419 7896 0.042431 AGACCTCTCATCTGCCTGGT 59.958 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1419 0.112412 ACCAATCGGGGACAGCTTTT 59.888 50.000 0.00 0.0 42.91 2.27 R
1631 1798 1.337817 CGAAGTCGACGCTCTTGGTG 61.338 60.000 10.46 0.0 43.02 4.17 R
3381 3575 1.277273 CACCTCAATCAGCTCACTGGA 59.723 52.381 0.00 0.0 44.59 3.86 R
3781 3993 3.503363 CAGATAAGGCAAAACACTGCTGA 59.497 43.478 0.00 0.0 42.25 4.26 R
4949 5191 0.391130 GAGTCAACACGCCCATGCTA 60.391 55.000 0.00 0.0 34.43 3.49 R
5401 5644 3.370953 GGTCTTACACGGAGGGAGTAGTA 60.371 52.174 0.00 0.0 0.00 1.82 R
6085 7506 1.351350 GGCTGATATGGGGAGGTTACC 59.649 57.143 0.00 0.0 0.00 2.85 R
6895 8372 0.743688 CAGCATGAGCCTACTCGTCT 59.256 55.000 0.00 0.0 46.69 4.18 R
7816 9614 0.104487 TCGGTTGGCTTCGTGTTGTA 59.896 50.000 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.747774 ATGCAGGCAACCAAACACC 59.252 52.632 0.00 0.00 37.17 4.16
19 20 1.047596 ATGCAGGCAACCAAACACCA 61.048 50.000 0.00 0.00 37.17 4.17
20 21 1.067916 GCAGGCAACCAAACACCAG 59.932 57.895 0.00 0.00 37.17 4.00
21 22 1.741525 CAGGCAACCAAACACCAGG 59.258 57.895 0.00 0.00 37.17 4.45
22 23 2.133641 AGGCAACCAAACACCAGGC 61.134 57.895 0.00 0.00 37.17 4.85
23 24 2.430610 GGCAACCAAACACCAGGCA 61.431 57.895 0.00 0.00 0.00 4.75
24 25 1.067916 GCAACCAAACACCAGGCAG 59.932 57.895 0.00 0.00 0.00 4.85
25 26 1.675720 GCAACCAAACACCAGGCAGT 61.676 55.000 0.00 0.00 0.00 4.40
26 27 0.102844 CAACCAAACACCAGGCAGTG 59.897 55.000 6.18 6.18 43.65 3.66
31 32 3.006677 ACACCAGGCAGTGTGGTT 58.993 55.556 11.91 0.00 46.73 3.67
32 33 1.152963 ACACCAGGCAGTGTGGTTC 60.153 57.895 11.91 0.00 46.73 3.62
33 34 1.152984 CACCAGGCAGTGTGGTTCA 60.153 57.895 2.70 0.00 46.73 3.18
34 35 1.149174 ACCAGGCAGTGTGGTTCAG 59.851 57.895 0.00 0.00 46.73 3.02
35 36 2.263741 CCAGGCAGTGTGGTTCAGC 61.264 63.158 0.00 0.00 0.00 4.26
36 37 2.113986 AGGCAGTGTGGTTCAGCC 59.886 61.111 0.00 0.00 45.54 4.85
37 38 2.985847 GGCAGTGTGGTTCAGCCC 60.986 66.667 0.00 0.00 39.42 5.19
38 39 2.203337 GCAGTGTGGTTCAGCCCA 60.203 61.111 0.00 0.00 36.04 5.36
39 40 1.604593 GCAGTGTGGTTCAGCCCAT 60.605 57.895 0.00 0.00 36.74 4.00
40 41 1.870055 GCAGTGTGGTTCAGCCCATG 61.870 60.000 0.00 0.00 36.74 3.66
41 42 1.604593 AGTGTGGTTCAGCCCATGC 60.605 57.895 0.00 0.00 36.74 4.06
42 43 1.902918 GTGTGGTTCAGCCCATGCA 60.903 57.895 0.00 0.00 41.13 3.96
43 44 1.604308 TGTGGTTCAGCCCATGCAG 60.604 57.895 0.00 0.00 41.13 4.41
44 45 2.036098 TGGTTCAGCCCATGCAGG 59.964 61.111 0.00 0.00 41.13 4.85
52 53 2.441532 CCCATGCAGGCAAGAGGG 60.442 66.667 13.15 13.15 35.39 4.30
53 54 3.145551 CCATGCAGGCAAGAGGGC 61.146 66.667 0.00 0.00 43.80 5.19
54 55 2.361992 CATGCAGGCAAGAGGGCA 60.362 61.111 0.00 0.00 46.44 5.36
55 56 2.687902 ATGCAGGCAAGAGGGCAT 59.312 55.556 0.00 0.00 46.44 4.40
58 59 2.361992 CAGGCAAGAGGGCATGCA 60.362 61.111 21.36 0.00 46.44 3.96
59 60 2.044252 AGGCAAGAGGGCATGCAG 60.044 61.111 21.36 2.67 46.44 4.41
60 61 3.145551 GGCAAGAGGGCATGCAGG 61.146 66.667 21.36 0.00 44.32 4.85
61 62 3.834799 GCAAGAGGGCATGCAGGC 61.835 66.667 21.36 16.47 42.12 4.85
62 63 2.361992 CAAGAGGGCATGCAGGCA 60.362 61.111 26.25 0.00 46.44 4.75
63 64 1.980232 CAAGAGGGCATGCAGGCAA 60.980 57.895 26.25 0.00 46.44 4.52
64 65 1.980772 AAGAGGGCATGCAGGCAAC 60.981 57.895 26.25 17.04 46.44 4.17
65 66 3.455469 GAGGGCATGCAGGCAACC 61.455 66.667 26.25 17.81 46.44 3.77
66 67 4.304413 AGGGCATGCAGGCAACCA 62.304 61.111 26.25 0.00 46.44 3.67
67 68 3.312718 GGGCATGCAGGCAACCAA 61.313 61.111 26.25 0.00 46.44 3.67
68 69 2.742403 GGCATGCAGGCAACCAAA 59.258 55.556 26.25 0.00 43.51 3.28
69 70 1.668793 GGCATGCAGGCAACCAAAC 60.669 57.895 26.25 1.22 43.51 2.93
70 71 1.069427 GCATGCAGGCAACCAAACA 59.931 52.632 20.11 0.00 37.17 2.83
71 72 0.532417 GCATGCAGGCAACCAAACAA 60.532 50.000 20.11 0.00 37.17 2.83
72 73 1.219646 CATGCAGGCAACCAAACAAC 58.780 50.000 0.00 0.00 37.17 3.32
73 74 0.829333 ATGCAGGCAACCAAACAACA 59.171 45.000 0.00 0.00 37.17 3.33
74 75 0.829333 TGCAGGCAACCAAACAACAT 59.171 45.000 0.00 0.00 37.17 2.71
75 76 1.219646 GCAGGCAACCAAACAACATG 58.780 50.000 0.00 0.00 37.17 3.21
76 77 1.219646 CAGGCAACCAAACAACATGC 58.780 50.000 0.00 0.00 36.31 4.06
77 78 0.829333 AGGCAACCAAACAACATGCA 59.171 45.000 0.00 0.00 38.73 3.96
78 79 1.202557 AGGCAACCAAACAACATGCAG 60.203 47.619 0.00 0.00 38.73 4.41
79 80 1.202510 GGCAACCAAACAACATGCAGA 60.203 47.619 0.00 0.00 38.73 4.26
80 81 2.548493 GGCAACCAAACAACATGCAGAT 60.548 45.455 0.00 0.00 38.73 2.90
81 82 2.477375 GCAACCAAACAACATGCAGATG 59.523 45.455 0.00 0.00 37.00 2.90
82 83 3.061322 CAACCAAACAACATGCAGATGG 58.939 45.455 0.00 3.18 33.39 3.51
83 84 2.318908 ACCAAACAACATGCAGATGGT 58.681 42.857 11.52 11.52 34.98 3.55
95 96 0.099968 CAGATGGTGCATTTGAGGCG 59.900 55.000 0.00 0.00 28.98 5.52
96 97 1.033746 AGATGGTGCATTTGAGGCGG 61.034 55.000 0.00 0.00 0.00 6.13
97 98 2.618312 GATGGTGCATTTGAGGCGGC 62.618 60.000 0.00 0.00 0.00 6.53
98 99 3.372730 GGTGCATTTGAGGCGGCA 61.373 61.111 13.08 0.00 0.00 5.69
99 100 2.713967 GGTGCATTTGAGGCGGCAT 61.714 57.895 13.08 0.00 38.68 4.40
100 101 1.216178 GTGCATTTGAGGCGGCATT 59.784 52.632 13.08 0.00 38.68 3.56
101 102 0.390209 GTGCATTTGAGGCGGCATTT 60.390 50.000 13.08 0.00 38.68 2.32
102 103 1.135141 GTGCATTTGAGGCGGCATTTA 60.135 47.619 13.08 0.00 38.68 1.40
103 104 1.755959 TGCATTTGAGGCGGCATTTAT 59.244 42.857 13.08 0.00 0.00 1.40
104 105 2.954989 TGCATTTGAGGCGGCATTTATA 59.045 40.909 13.08 0.00 0.00 0.98
105 106 3.573538 TGCATTTGAGGCGGCATTTATAT 59.426 39.130 13.08 0.00 0.00 0.86
106 107 4.764308 TGCATTTGAGGCGGCATTTATATA 59.236 37.500 13.08 0.00 0.00 0.86
107 108 5.106197 TGCATTTGAGGCGGCATTTATATAG 60.106 40.000 13.08 0.00 0.00 1.31
108 109 5.106157 GCATTTGAGGCGGCATTTATATAGT 60.106 40.000 13.08 0.00 0.00 2.12
109 110 6.546395 CATTTGAGGCGGCATTTATATAGTC 58.454 40.000 13.08 0.00 0.00 2.59
110 111 4.882842 TGAGGCGGCATTTATATAGTCA 57.117 40.909 13.08 0.00 0.00 3.41
111 112 4.820897 TGAGGCGGCATTTATATAGTCAG 58.179 43.478 13.08 0.00 0.00 3.51
112 113 4.184629 GAGGCGGCATTTATATAGTCAGG 58.815 47.826 13.08 0.00 0.00 3.86
113 114 3.583086 AGGCGGCATTTATATAGTCAGGT 59.417 43.478 13.08 0.00 0.00 4.00
114 115 4.041691 AGGCGGCATTTATATAGTCAGGTT 59.958 41.667 13.08 0.00 0.00 3.50
115 116 4.154195 GGCGGCATTTATATAGTCAGGTTG 59.846 45.833 3.07 0.00 0.00 3.77
116 117 4.994852 GCGGCATTTATATAGTCAGGTTGA 59.005 41.667 0.00 0.00 0.00 3.18
117 118 5.120830 GCGGCATTTATATAGTCAGGTTGAG 59.879 44.000 0.00 0.00 0.00 3.02
118 119 6.223852 CGGCATTTATATAGTCAGGTTGAGT 58.776 40.000 0.00 0.00 33.94 3.41
119 120 6.146184 CGGCATTTATATAGTCAGGTTGAGTG 59.854 42.308 0.00 0.00 31.49 3.51
120 121 6.428159 GGCATTTATATAGTCAGGTTGAGTGG 59.572 42.308 0.00 0.00 31.49 4.00
121 122 7.217200 GCATTTATATAGTCAGGTTGAGTGGA 58.783 38.462 0.00 0.00 31.49 4.02
122 123 7.386299 GCATTTATATAGTCAGGTTGAGTGGAG 59.614 40.741 0.00 0.00 31.49 3.86
123 124 8.642432 CATTTATATAGTCAGGTTGAGTGGAGA 58.358 37.037 0.00 0.00 31.49 3.71
124 125 8.603898 TTTATATAGTCAGGTTGAGTGGAGAA 57.396 34.615 0.00 0.00 31.49 2.87
125 126 6.723298 ATATAGTCAGGTTGAGTGGAGAAG 57.277 41.667 0.00 0.00 31.49 2.85
126 127 2.683768 AGTCAGGTTGAGTGGAGAAGT 58.316 47.619 0.00 0.00 0.00 3.01
127 128 2.366916 AGTCAGGTTGAGTGGAGAAGTG 59.633 50.000 0.00 0.00 0.00 3.16
128 129 2.103263 GTCAGGTTGAGTGGAGAAGTGT 59.897 50.000 0.00 0.00 0.00 3.55
129 130 3.321111 GTCAGGTTGAGTGGAGAAGTGTA 59.679 47.826 0.00 0.00 0.00 2.90
130 131 4.021016 GTCAGGTTGAGTGGAGAAGTGTAT 60.021 45.833 0.00 0.00 0.00 2.29
131 132 4.021104 TCAGGTTGAGTGGAGAAGTGTATG 60.021 45.833 0.00 0.00 0.00 2.39
132 133 3.003480 GGTTGAGTGGAGAAGTGTATGC 58.997 50.000 0.00 0.00 0.00 3.14
133 134 3.557054 GGTTGAGTGGAGAAGTGTATGCA 60.557 47.826 0.00 0.00 0.00 3.96
134 135 4.065088 GTTGAGTGGAGAAGTGTATGCAA 58.935 43.478 0.00 0.00 0.00 4.08
135 136 4.558226 TGAGTGGAGAAGTGTATGCAAT 57.442 40.909 0.00 0.00 0.00 3.56
136 137 4.910195 TGAGTGGAGAAGTGTATGCAATT 58.090 39.130 0.00 0.00 35.44 2.32
137 138 4.937620 TGAGTGGAGAAGTGTATGCAATTC 59.062 41.667 14.99 14.99 46.45 2.17
145 146 6.025707 GAAGTGTATGCAATTCGAGTACTG 57.974 41.667 8.20 0.00 39.40 2.74
146 147 5.073311 AGTGTATGCAATTCGAGTACTGT 57.927 39.130 0.00 0.00 0.00 3.55
147 148 6.203808 AGTGTATGCAATTCGAGTACTGTA 57.796 37.500 0.00 0.00 0.00 2.74
148 149 6.266323 AGTGTATGCAATTCGAGTACTGTAG 58.734 40.000 0.00 0.00 0.00 2.74
149 150 5.041287 TGTATGCAATTCGAGTACTGTAGC 58.959 41.667 0.00 0.00 0.00 3.58
150 151 2.526077 TGCAATTCGAGTACTGTAGCG 58.474 47.619 0.00 0.00 0.00 4.26
151 152 1.255600 GCAATTCGAGTACTGTAGCGC 59.744 52.381 0.00 0.00 0.00 5.92
152 153 2.526077 CAATTCGAGTACTGTAGCGCA 58.474 47.619 11.47 0.00 0.00 6.09
153 154 2.190325 ATTCGAGTACTGTAGCGCAC 57.810 50.000 11.47 6.60 0.00 5.34
154 155 0.179207 TTCGAGTACTGTAGCGCACG 60.179 55.000 11.47 5.37 0.00 5.34
155 156 1.582937 CGAGTACTGTAGCGCACGG 60.583 63.158 11.47 13.51 39.65 4.94
156 157 1.872679 GAGTACTGTAGCGCACGGC 60.873 63.158 11.47 0.00 44.05 5.68
165 166 4.560856 GCGCACGGCAACCAAACA 62.561 61.111 0.30 0.00 42.87 2.83
166 167 2.653766 CGCACGGCAACCAAACAC 60.654 61.111 0.00 0.00 0.00 3.32
167 168 2.653766 GCACGGCAACCAAACACG 60.654 61.111 0.00 0.00 0.00 4.49
168 169 2.653766 CACGGCAACCAAACACGC 60.654 61.111 0.00 0.00 0.00 5.34
169 170 3.894947 ACGGCAACCAAACACGCC 61.895 61.111 0.00 0.00 41.30 5.68
170 171 3.893763 CGGCAACCAAACACGCCA 61.894 61.111 0.00 0.00 45.14 5.69
268 369 1.077429 GAATGTGGTCAGAGGCCCC 60.077 63.158 0.00 0.00 0.00 5.80
380 481 1.388547 ATGTGTTCCGTGCTGTGTTT 58.611 45.000 0.00 0.00 0.00 2.83
416 517 2.512515 GCGACCTCTCCACATGCC 60.513 66.667 0.00 0.00 0.00 4.40
493 601 1.284297 GCCTTGAACATGCGGTTTGC 61.284 55.000 0.00 0.00 40.63 3.68
576 688 5.509332 GGGTTTGCTATAGTAGTACTCCAGC 60.509 48.000 21.16 21.16 36.35 4.85
587 699 6.222389 AGTAGTACTCCAGCACGTATAGTAG 58.778 44.000 0.00 0.00 0.00 2.57
679 807 3.334751 CCGCAGCAACGACGACAA 61.335 61.111 0.00 0.00 34.06 3.18
746 875 3.249080 GGAAACTCGAACCGTGAAAATCA 59.751 43.478 0.00 0.00 0.00 2.57
769 904 6.365789 TCAAATAGTACCGTAAAACGAACAGG 59.634 38.462 0.15 0.00 46.05 4.00
933 1068 1.398451 CGACACAACGGAGCATGAAAC 60.398 52.381 0.00 0.00 0.00 2.78
1266 1419 5.762711 TCAACTCGAGGAATCAATTTGAACA 59.237 36.000 18.41 0.00 0.00 3.18
1323 1476 1.663695 TCGAATTGAGCCGGAATTCC 58.336 50.000 15.01 15.01 36.75 3.01
1325 1478 1.762708 GAATTGAGCCGGAATTCCCA 58.237 50.000 19.01 7.95 34.87 4.37
1329 1486 1.762708 TGAGCCGGAATTCCCATTTC 58.237 50.000 19.01 11.50 34.14 2.17
1365 1522 9.685828 TTTCCGGTTCATTTTTAAAAGAGTATG 57.314 29.630 0.00 2.76 0.00 2.39
1422 1579 1.108132 TGCTGCACACCAAGCAATGA 61.108 50.000 0.00 0.00 42.17 2.57
1444 1601 2.411031 GCGAATATACCATTTCGTGCCG 60.411 50.000 7.74 0.00 44.87 5.69
1558 1725 1.064654 CTTTCGAAGCTTGGGCATAGC 59.935 52.381 2.10 2.22 41.70 2.97
1856 2045 6.999272 TGGAGTTATTTTGTGCCTTTGTACTA 59.001 34.615 0.00 0.00 0.00 1.82
1889 2078 7.181361 TCTGAAATACTGAATGATTTTCCCCA 58.819 34.615 0.00 0.00 0.00 4.96
1896 2085 6.466812 ACTGAATGATTTTCCCCATTTGTTC 58.533 36.000 0.00 0.00 33.57 3.18
2067 2256 1.407656 AAGACCGTGGAAGAGGTGCA 61.408 55.000 0.00 0.00 41.51 4.57
2085 2274 1.071385 GCACTCCCTATCTGTGGATGG 59.929 57.143 0.00 0.00 33.71 3.51
2108 2297 4.660168 CAGCCCTGCATAATCCTCTTATT 58.340 43.478 0.00 0.00 0.00 1.40
2112 2301 8.049117 CAGCCCTGCATAATCCTCTTATTATTA 58.951 37.037 0.00 0.00 31.17 0.98
2227 2419 1.776063 ACCGTCCAGGGTAAAAAGGAA 59.224 47.619 0.00 0.00 46.96 3.36
2287 2479 4.932200 CAGAAGAAGTAAGTACTTGCTGGG 59.068 45.833 24.46 8.89 45.84 4.45
2388 2580 2.028930 CCCTCTAGTGGCCGATATTCAC 60.029 54.545 5.25 0.00 0.00 3.18
2508 2700 3.821600 TGCGTTGGCTAAATTCTTAACCA 59.178 39.130 0.00 0.00 40.82 3.67
2590 2782 8.128322 AGCTGGAATATACTGAAGACGATTAT 57.872 34.615 0.00 0.00 0.00 1.28
2647 2839 7.928307 AACTTTATTCATTCTCTTGCTGCTA 57.072 32.000 0.00 0.00 0.00 3.49
2658 2850 1.063174 CTTGCTGCTACTTCAATCCGC 59.937 52.381 0.00 0.00 0.00 5.54
2688 2880 7.049754 ACATATCATGTGTCATCTTACTTGCA 58.950 34.615 0.00 0.00 43.01 4.08
2755 2947 3.701205 TGCAAGAAGTATGGAAGAGCA 57.299 42.857 0.00 0.00 0.00 4.26
2939 3131 4.735873 GCTTTGGAATTTGCTAGGATCTGC 60.736 45.833 0.00 0.00 0.00 4.26
3146 3338 6.019152 CGGAACACTTTTGATGGTAAATACG 58.981 40.000 0.00 0.00 0.00 3.06
3178 3370 5.297547 TCCTAGTGTTGTGTGAATGAGTTC 58.702 41.667 0.00 0.00 34.85 3.01
3182 3374 4.576463 AGTGTTGTGTGAATGAGTTCCTTC 59.424 41.667 0.00 0.00 33.26 3.46
3231 3423 6.808829 TGAATTACATGGGAATCTTGATTGC 58.191 36.000 6.35 6.35 0.00 3.56
3360 3554 7.231317 TCAGATAGCTGATTCCAAAACAGTTTT 59.769 33.333 6.59 5.37 45.88 2.43
3399 3593 2.775911 TTCCAGTGAGCTGATTGAGG 57.224 50.000 0.00 0.00 45.28 3.86
3531 3725 4.161102 ACTTGGTAGTCTCTTGTAAGGCT 58.839 43.478 0.00 0.00 34.95 4.58
3532 3726 5.331069 ACTTGGTAGTCTCTTGTAAGGCTA 58.669 41.667 0.00 0.00 32.35 3.93
3704 3913 2.825532 GGCTGCAAACCTTCAAATAGGA 59.174 45.455 0.50 0.00 38.73 2.94
3826 4038 6.198687 TGATTGTTTGAGCACTCTTAAAACG 58.801 36.000 0.00 0.00 34.52 3.60
3846 4058 5.148651 ACGTTTATCTTGTGCTCTTAGGT 57.851 39.130 0.00 0.00 0.00 3.08
3929 4141 6.627731 GCCTTTACAGAAGGAGGTAAGTAGAC 60.628 46.154 8.92 0.00 39.81 2.59
4162 4374 7.823310 ACCAAAAGATATCTCTATGCAGCTATG 59.177 37.037 5.51 0.00 0.00 2.23
4353 4573 3.774766 TCCTTTATAGGTCTCTTGCTGCA 59.225 43.478 0.00 0.00 42.60 4.41
4555 4775 7.945134 AGCAGTGAGTTTCATACATTTCTTTT 58.055 30.769 0.00 0.00 0.00 2.27
4556 4776 7.864379 AGCAGTGAGTTTCATACATTTCTTTTG 59.136 33.333 0.00 0.00 0.00 2.44
4902 5144 7.445402 TCCTTTATGAAAGATTGCCAGCTATAC 59.555 37.037 0.47 0.00 41.02 1.47
4949 5191 7.275888 TGCACTCAAAAGATTAGTTGACATT 57.724 32.000 0.00 0.00 30.73 2.71
5081 5323 4.280677 CCAGAAGGTAGCAAATTGTTTCCA 59.719 41.667 8.05 0.00 0.00 3.53
5086 5328 6.233905 AGGTAGCAAATTGTTTCCAACTTT 57.766 33.333 8.05 0.00 32.26 2.66
5424 5675 0.113776 ACTCCCTCCGTGTAAGACCA 59.886 55.000 0.00 0.00 0.00 4.02
5434 5685 4.882427 TCCGTGTAAGACCATTTTTGACAA 59.118 37.500 0.00 0.00 0.00 3.18
5435 5686 5.357314 TCCGTGTAAGACCATTTTTGACAAA 59.643 36.000 0.00 0.00 0.00 2.83
5436 5687 6.039941 TCCGTGTAAGACCATTTTTGACAAAT 59.960 34.615 0.50 0.00 0.00 2.32
5437 5688 7.228906 TCCGTGTAAGACCATTTTTGACAAATA 59.771 33.333 0.50 0.00 0.00 1.40
5438 5689 8.026607 CCGTGTAAGACCATTTTTGACAAATAT 58.973 33.333 0.50 0.00 0.00 1.28
5488 5739 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5777 6039 8.635765 ATTCCTGAGTGTTTGTTATGTTGTAT 57.364 30.769 0.00 0.00 0.00 2.29
6014 7435 2.892852 GGCATGCTCTGTCTCTAGATCT 59.107 50.000 18.92 0.00 0.00 2.75
6073 7494 1.412710 TCACACTCTCCCTGTCACAAC 59.587 52.381 0.00 0.00 0.00 3.32
6085 7506 4.290155 CCTGTCACAACGAAAATTTGAGG 58.710 43.478 0.00 0.00 0.00 3.86
6086 7507 4.290155 CTGTCACAACGAAAATTTGAGGG 58.710 43.478 0.00 0.00 0.00 4.30
6108 7529 0.846693 ACCTCCCCATATCAGCCAAC 59.153 55.000 0.00 0.00 0.00 3.77
6109 7530 0.111253 CCTCCCCATATCAGCCAACC 59.889 60.000 0.00 0.00 0.00 3.77
6353 7830 3.038280 TGTCTCTTGTCCTTCTTGTGGA 58.962 45.455 0.00 0.00 0.00 4.02
6419 7896 0.042431 AGACCTCTCATCTGCCTGGT 59.958 55.000 0.00 0.00 0.00 4.00
6452 7929 6.867662 ATCTCTCGAACACTTGATTGTTTT 57.132 33.333 0.00 0.00 39.88 2.43
6499 7976 6.318648 TGGCCTGATTCACTATATTTGTGTTC 59.681 38.462 3.32 7.40 36.83 3.18
6629 8106 3.243839 GGAAGGTAACAGTCCAACACGTA 60.244 47.826 0.00 0.00 41.48 3.57
6663 8140 9.986157 AATCATACCAGATGGATATTTTGCTAT 57.014 29.630 5.72 0.00 38.94 2.97
6707 8184 4.579753 TGTTCATGAATCTGTTGAGCACAA 59.420 37.500 12.12 0.00 33.87 3.33
6805 8282 5.648092 ACCATGTATCTTTTTGCTGTAGACC 59.352 40.000 0.00 0.00 0.00 3.85
6850 8327 1.133809 AGGGTGCCACTGAAGCCTTA 61.134 55.000 0.00 0.00 41.49 2.69
6895 8372 1.580059 GTTGGGTGGATCCTCCTACA 58.420 55.000 27.75 17.60 37.46 2.74
6898 8375 1.343075 TGGGTGGATCCTCCTACAGAC 60.343 57.143 27.75 13.54 37.46 3.51
6981 8463 6.374417 AAAATACAGTGTATCCACAGAGGT 57.626 37.500 16.06 0.00 44.39 3.85
6988 8470 1.694696 GTATCCACAGAGGTCATCCCC 59.305 57.143 0.00 0.00 39.02 4.81
6998 8480 2.301870 GAGGTCATCCCCGCACATATTA 59.698 50.000 0.00 0.00 0.00 0.98
7002 8484 4.816385 GGTCATCCCCGCACATATTATATG 59.184 45.833 10.37 10.37 0.00 1.78
7004 8486 5.880332 GTCATCCCCGCACATATTATATGTT 59.120 40.000 14.49 0.00 0.00 2.71
7080 8562 2.502295 AGCATAAGCAGCATAGAAGCC 58.498 47.619 0.00 0.00 45.49 4.35
7131 8613 8.942338 TTAAGCATGTAGGAGTACATTTGTAG 57.058 34.615 0.00 0.00 45.99 2.74
7150 8632 7.634671 TTGTAGATGACATGCAGAAAATCAT 57.365 32.000 0.00 0.00 38.07 2.45
7154 8636 7.260558 AGATGACATGCAGAAAATCATAGTG 57.739 36.000 0.00 0.00 30.23 2.74
7159 8641 6.996509 ACATGCAGAAAATCATAGTGGTTTT 58.003 32.000 0.87 0.87 42.78 2.43
7160 8642 8.121305 ACATGCAGAAAATCATAGTGGTTTTA 57.879 30.769 1.27 0.00 40.44 1.52
7189 8671 0.394565 GAACTAGATGATGCCCGGCT 59.605 55.000 11.61 0.00 0.00 5.52
7203 8685 1.811266 CGGCTCGTTGCTGCTACAT 60.811 57.895 14.17 0.00 41.61 2.29
7377 8860 0.773644 ACATCCCTGAGTGGTTTGCT 59.226 50.000 0.00 0.00 0.00 3.91
7469 8952 2.225242 ACTCTCACTGACTGATGGGTCT 60.225 50.000 0.00 0.00 37.16 3.85
7500 9019 3.466836 TGACTGGTTGCACAGAAACTAG 58.533 45.455 11.03 4.46 40.97 2.57
7646 9169 2.032634 GCGACCTCAAATCACGGCA 61.033 57.895 0.00 0.00 0.00 5.69
7648 9171 1.361668 CGACCTCAAATCACGGCAGG 61.362 60.000 0.00 0.00 0.00 4.85
7653 9176 0.400213 TCAAATCACGGCAGGGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
7811 9609 0.041047 CTGACGACGTCGGTGTTACA 60.041 55.000 37.89 24.43 44.95 2.41
7812 9610 0.380024 TGACGACGTCGGTGTTACAA 59.620 50.000 37.89 13.71 44.95 2.41
7813 9611 1.001487 TGACGACGTCGGTGTTACAAT 60.001 47.619 37.89 16.78 44.95 2.71
7814 9612 1.384409 GACGACGTCGGTGTTACAATG 59.616 52.381 37.89 9.83 44.95 2.82
7815 9613 1.269206 ACGACGTCGGTGTTACAATGT 60.269 47.619 37.89 12.90 44.95 2.71
7816 9614 1.788308 CGACGTCGGTGTTACAATGTT 59.212 47.619 29.70 0.00 35.37 2.71
7817 9615 2.979151 CGACGTCGGTGTTACAATGTTA 59.021 45.455 29.70 0.00 35.37 2.41
7818 9616 3.181550 CGACGTCGGTGTTACAATGTTAC 60.182 47.826 29.70 0.00 35.37 2.50
8066 9865 1.522569 GGGGCTCTTCTATGCACGT 59.477 57.895 0.00 0.00 32.57 4.49
8231 10037 3.792047 CGGTGGCTACGTCGACGA 61.792 66.667 41.52 24.16 43.02 4.20
8267 10074 3.260483 GCTCGATGCGTGCTCCAG 61.260 66.667 6.62 0.00 42.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.047596 TGGTGTTTGGTTGCCTGCAT 61.048 50.000 0.00 0.00 0.00 3.96
1 2 1.674764 CTGGTGTTTGGTTGCCTGCA 61.675 55.000 0.00 0.00 0.00 4.41
2 3 1.067916 CTGGTGTTTGGTTGCCTGC 59.932 57.895 0.00 0.00 0.00 4.85
3 4 1.741525 CCTGGTGTTTGGTTGCCTG 59.258 57.895 0.00 0.00 0.00 4.85
4 5 2.133641 GCCTGGTGTTTGGTTGCCT 61.134 57.895 0.00 0.00 0.00 4.75
5 6 2.367868 CTGCCTGGTGTTTGGTTGCC 62.368 60.000 0.00 0.00 0.00 4.52
6 7 1.067916 CTGCCTGGTGTTTGGTTGC 59.932 57.895 0.00 0.00 0.00 4.17
7 8 0.102844 CACTGCCTGGTGTTTGGTTG 59.897 55.000 0.00 0.00 33.04 3.77
8 9 0.324275 ACACTGCCTGGTGTTTGGTT 60.324 50.000 0.00 0.00 46.71 3.67
9 10 1.037030 CACACTGCCTGGTGTTTGGT 61.037 55.000 4.79 0.00 46.71 3.67
10 11 1.735360 CACACTGCCTGGTGTTTGG 59.265 57.895 4.79 0.00 46.71 3.28
11 12 1.037030 ACCACACTGCCTGGTGTTTG 61.037 55.000 4.79 0.00 46.71 2.93
12 13 0.324275 AACCACACTGCCTGGTGTTT 60.324 50.000 4.79 0.00 46.71 2.83
13 14 0.751643 GAACCACACTGCCTGGTGTT 60.752 55.000 4.79 0.00 46.71 3.32
15 16 1.152984 TGAACCACACTGCCTGGTG 60.153 57.895 0.00 0.00 41.45 4.17
16 17 1.149174 CTGAACCACACTGCCTGGT 59.851 57.895 0.00 0.00 44.39 4.00
17 18 2.263741 GCTGAACCACACTGCCTGG 61.264 63.158 0.00 0.00 34.62 4.45
18 19 2.263741 GGCTGAACCACACTGCCTG 61.264 63.158 0.00 0.00 44.83 4.85
19 20 2.113986 GGCTGAACCACACTGCCT 59.886 61.111 0.00 0.00 44.83 4.75
20 21 2.985847 GGGCTGAACCACACTGCC 60.986 66.667 0.00 0.00 46.57 4.85
21 22 1.604593 ATGGGCTGAACCACACTGC 60.605 57.895 0.00 0.00 44.72 4.40
22 23 1.870055 GCATGGGCTGAACCACACTG 61.870 60.000 0.00 0.00 44.72 3.66
23 24 1.604593 GCATGGGCTGAACCACACT 60.605 57.895 0.00 0.00 44.72 3.55
24 25 1.870055 CTGCATGGGCTGAACCACAC 61.870 60.000 0.00 0.00 44.72 3.82
25 26 1.604308 CTGCATGGGCTGAACCACA 60.604 57.895 0.00 0.00 44.72 4.17
26 27 2.345760 CCTGCATGGGCTGAACCAC 61.346 63.158 0.00 0.00 44.72 4.16
27 28 2.036098 CCTGCATGGGCTGAACCA 59.964 61.111 0.00 0.00 46.24 3.67
35 36 2.441532 CCCTCTTGCCTGCATGGG 60.442 66.667 9.79 9.79 36.00 4.00
36 37 3.145551 GCCCTCTTGCCTGCATGG 61.146 66.667 5.34 0.00 39.35 3.66
37 38 1.756950 ATGCCCTCTTGCCTGCATG 60.757 57.895 0.00 0.00 42.48 4.06
38 39 1.756950 CATGCCCTCTTGCCTGCAT 60.757 57.895 0.00 0.00 44.79 3.96
39 40 2.361992 CATGCCCTCTTGCCTGCA 60.362 61.111 0.00 0.00 38.23 4.41
40 41 3.834799 GCATGCCCTCTTGCCTGC 61.835 66.667 6.36 0.00 43.73 4.85
41 42 2.361992 TGCATGCCCTCTTGCCTG 60.362 61.111 16.68 0.00 41.20 4.85
42 43 2.044252 CTGCATGCCCTCTTGCCT 60.044 61.111 16.68 0.00 41.20 4.75
43 44 3.145551 CCTGCATGCCCTCTTGCC 61.146 66.667 16.68 0.00 41.20 4.52
44 45 3.834799 GCCTGCATGCCCTCTTGC 61.835 66.667 16.68 4.88 41.96 4.01
45 46 1.980232 TTGCCTGCATGCCCTCTTG 60.980 57.895 16.68 0.00 0.00 3.02
46 47 1.980772 GTTGCCTGCATGCCCTCTT 60.981 57.895 16.68 0.00 0.00 2.85
47 48 2.362120 GTTGCCTGCATGCCCTCT 60.362 61.111 16.68 0.00 0.00 3.69
48 49 3.455469 GGTTGCCTGCATGCCCTC 61.455 66.667 16.68 4.18 0.00 4.30
49 50 3.831727 TTGGTTGCCTGCATGCCCT 62.832 57.895 16.68 0.00 0.00 5.19
50 51 2.881528 TTTGGTTGCCTGCATGCCC 61.882 57.895 16.68 8.41 0.00 5.36
51 52 1.668793 GTTTGGTTGCCTGCATGCC 60.669 57.895 16.68 0.00 0.00 4.40
52 53 0.532417 TTGTTTGGTTGCCTGCATGC 60.532 50.000 11.82 11.82 0.00 4.06
53 54 1.219646 GTTGTTTGGTTGCCTGCATG 58.780 50.000 0.00 0.00 0.00 4.06
54 55 0.829333 TGTTGTTTGGTTGCCTGCAT 59.171 45.000 0.00 0.00 0.00 3.96
55 56 0.829333 ATGTTGTTTGGTTGCCTGCA 59.171 45.000 0.00 0.00 0.00 4.41
56 57 1.219646 CATGTTGTTTGGTTGCCTGC 58.780 50.000 0.00 0.00 0.00 4.85
57 58 1.219646 GCATGTTGTTTGGTTGCCTG 58.780 50.000 0.00 0.00 0.00 4.85
58 59 0.829333 TGCATGTTGTTTGGTTGCCT 59.171 45.000 0.00 0.00 32.39 4.75
59 60 1.202510 TCTGCATGTTGTTTGGTTGCC 60.203 47.619 0.00 0.00 32.39 4.52
60 61 2.222007 TCTGCATGTTGTTTGGTTGC 57.778 45.000 0.00 0.00 0.00 4.17
61 62 3.061322 CCATCTGCATGTTGTTTGGTTG 58.939 45.455 0.00 0.00 0.00 3.77
62 63 2.699846 ACCATCTGCATGTTGTTTGGTT 59.300 40.909 0.00 0.00 32.23 3.67
63 64 2.036217 CACCATCTGCATGTTGTTTGGT 59.964 45.455 0.00 0.00 36.46 3.67
64 65 2.679450 CACCATCTGCATGTTGTTTGG 58.321 47.619 0.00 0.00 0.00 3.28
65 66 2.063266 GCACCATCTGCATGTTGTTTG 58.937 47.619 0.00 0.00 46.29 2.93
66 67 2.443887 GCACCATCTGCATGTTGTTT 57.556 45.000 0.00 0.00 46.29 2.83
76 77 0.099968 CGCCTCAAATGCACCATCTG 59.900 55.000 0.00 0.00 0.00 2.90
77 78 1.033746 CCGCCTCAAATGCACCATCT 61.034 55.000 0.00 0.00 0.00 2.90
78 79 1.434696 CCGCCTCAAATGCACCATC 59.565 57.895 0.00 0.00 0.00 3.51
79 80 2.713967 GCCGCCTCAAATGCACCAT 61.714 57.895 0.00 0.00 0.00 3.55
80 81 3.372730 GCCGCCTCAAATGCACCA 61.373 61.111 0.00 0.00 0.00 4.17
81 82 2.229690 AATGCCGCCTCAAATGCACC 62.230 55.000 0.00 0.00 36.41 5.01
82 83 0.390209 AAATGCCGCCTCAAATGCAC 60.390 50.000 0.00 0.00 36.41 4.57
83 84 1.180907 TAAATGCCGCCTCAAATGCA 58.819 45.000 0.00 0.00 38.23 3.96
84 85 2.514205 ATAAATGCCGCCTCAAATGC 57.486 45.000 0.00 0.00 0.00 3.56
85 86 6.149308 TGACTATATAAATGCCGCCTCAAATG 59.851 38.462 0.00 0.00 0.00 2.32
86 87 6.237901 TGACTATATAAATGCCGCCTCAAAT 58.762 36.000 0.00 0.00 0.00 2.32
87 88 5.616270 TGACTATATAAATGCCGCCTCAAA 58.384 37.500 0.00 0.00 0.00 2.69
88 89 5.222079 TGACTATATAAATGCCGCCTCAA 57.778 39.130 0.00 0.00 0.00 3.02
89 90 4.322725 CCTGACTATATAAATGCCGCCTCA 60.323 45.833 0.00 0.00 0.00 3.86
90 91 4.184629 CCTGACTATATAAATGCCGCCTC 58.815 47.826 0.00 0.00 0.00 4.70
91 92 3.583086 ACCTGACTATATAAATGCCGCCT 59.417 43.478 0.00 0.00 0.00 5.52
92 93 3.939066 ACCTGACTATATAAATGCCGCC 58.061 45.455 0.00 0.00 0.00 6.13
93 94 4.994852 TCAACCTGACTATATAAATGCCGC 59.005 41.667 0.00 0.00 0.00 6.53
94 95 6.146184 CACTCAACCTGACTATATAAATGCCG 59.854 42.308 0.00 0.00 0.00 5.69
95 96 6.428159 CCACTCAACCTGACTATATAAATGCC 59.572 42.308 0.00 0.00 0.00 4.40
96 97 7.217200 TCCACTCAACCTGACTATATAAATGC 58.783 38.462 0.00 0.00 0.00 3.56
97 98 8.642432 TCTCCACTCAACCTGACTATATAAATG 58.358 37.037 0.00 0.00 0.00 2.32
98 99 8.783660 TCTCCACTCAACCTGACTATATAAAT 57.216 34.615 0.00 0.00 0.00 1.40
99 100 8.603898 TTCTCCACTCAACCTGACTATATAAA 57.396 34.615 0.00 0.00 0.00 1.40
100 101 7.839705 ACTTCTCCACTCAACCTGACTATATAA 59.160 37.037 0.00 0.00 0.00 0.98
101 102 7.285629 CACTTCTCCACTCAACCTGACTATATA 59.714 40.741 0.00 0.00 0.00 0.86
102 103 6.097554 CACTTCTCCACTCAACCTGACTATAT 59.902 42.308 0.00 0.00 0.00 0.86
103 104 5.419155 CACTTCTCCACTCAACCTGACTATA 59.581 44.000 0.00 0.00 0.00 1.31
104 105 4.221703 CACTTCTCCACTCAACCTGACTAT 59.778 45.833 0.00 0.00 0.00 2.12
105 106 3.574396 CACTTCTCCACTCAACCTGACTA 59.426 47.826 0.00 0.00 0.00 2.59
106 107 2.366916 CACTTCTCCACTCAACCTGACT 59.633 50.000 0.00 0.00 0.00 3.41
107 108 2.103263 ACACTTCTCCACTCAACCTGAC 59.897 50.000 0.00 0.00 0.00 3.51
108 109 2.398588 ACACTTCTCCACTCAACCTGA 58.601 47.619 0.00 0.00 0.00 3.86
109 110 2.918712 ACACTTCTCCACTCAACCTG 57.081 50.000 0.00 0.00 0.00 4.00
110 111 3.307059 GCATACACTTCTCCACTCAACCT 60.307 47.826 0.00 0.00 0.00 3.50
111 112 3.003480 GCATACACTTCTCCACTCAACC 58.997 50.000 0.00 0.00 0.00 3.77
112 113 3.664107 TGCATACACTTCTCCACTCAAC 58.336 45.455 0.00 0.00 0.00 3.18
113 114 4.350368 TTGCATACACTTCTCCACTCAA 57.650 40.909 0.00 0.00 0.00 3.02
114 115 4.558226 ATTGCATACACTTCTCCACTCA 57.442 40.909 0.00 0.00 0.00 3.41
115 116 4.033358 CGAATTGCATACACTTCTCCACTC 59.967 45.833 0.00 0.00 34.27 3.51
116 117 3.935203 CGAATTGCATACACTTCTCCACT 59.065 43.478 0.00 0.00 34.27 4.00
117 118 3.932710 TCGAATTGCATACACTTCTCCAC 59.067 43.478 0.00 0.00 34.27 4.02
118 119 4.183865 CTCGAATTGCATACACTTCTCCA 58.816 43.478 0.00 0.00 34.27 3.86
119 120 4.184629 ACTCGAATTGCATACACTTCTCC 58.815 43.478 0.00 0.00 34.27 3.71
120 121 6.020281 CAGTACTCGAATTGCATACACTTCTC 60.020 42.308 0.00 0.00 34.27 2.87
121 122 5.807520 CAGTACTCGAATTGCATACACTTCT 59.192 40.000 0.00 0.00 34.27 2.85
122 123 5.577164 ACAGTACTCGAATTGCATACACTTC 59.423 40.000 0.00 0.00 33.37 3.01
123 124 5.479306 ACAGTACTCGAATTGCATACACTT 58.521 37.500 0.00 0.00 0.00 3.16
124 125 5.073311 ACAGTACTCGAATTGCATACACT 57.927 39.130 0.00 0.00 0.00 3.55
125 126 5.051641 GCTACAGTACTCGAATTGCATACAC 60.052 44.000 0.00 0.00 0.00 2.90
126 127 5.041287 GCTACAGTACTCGAATTGCATACA 58.959 41.667 0.00 0.00 0.00 2.29
127 128 4.146616 CGCTACAGTACTCGAATTGCATAC 59.853 45.833 0.00 0.00 0.00 2.39
128 129 4.287720 CGCTACAGTACTCGAATTGCATA 58.712 43.478 0.00 0.00 0.00 3.14
129 130 3.116300 CGCTACAGTACTCGAATTGCAT 58.884 45.455 0.00 0.00 0.00 3.96
130 131 2.526077 CGCTACAGTACTCGAATTGCA 58.474 47.619 0.00 0.00 0.00 4.08
131 132 1.255600 GCGCTACAGTACTCGAATTGC 59.744 52.381 0.00 0.00 0.00 3.56
132 133 2.279136 GTGCGCTACAGTACTCGAATTG 59.721 50.000 9.73 0.00 0.00 2.32
133 134 2.527100 GTGCGCTACAGTACTCGAATT 58.473 47.619 9.73 0.00 0.00 2.17
134 135 1.531264 CGTGCGCTACAGTACTCGAAT 60.531 52.381 9.73 0.00 0.00 3.34
135 136 0.179207 CGTGCGCTACAGTACTCGAA 60.179 55.000 9.73 0.00 0.00 3.71
136 137 1.422662 CGTGCGCTACAGTACTCGA 59.577 57.895 9.73 0.00 0.00 4.04
137 138 1.582937 CCGTGCGCTACAGTACTCG 60.583 63.158 9.73 0.00 0.00 4.18
138 139 1.872679 GCCGTGCGCTACAGTACTC 60.873 63.158 9.73 0.00 0.00 2.59
139 140 2.149803 TTGCCGTGCGCTACAGTACT 62.150 55.000 9.73 0.00 38.78 2.73
140 141 1.735198 TTGCCGTGCGCTACAGTAC 60.735 57.895 9.73 0.00 38.78 2.73
141 142 1.735198 GTTGCCGTGCGCTACAGTA 60.735 57.895 9.73 0.00 42.09 2.74
142 143 3.041940 GTTGCCGTGCGCTACAGT 61.042 61.111 9.73 0.00 42.09 3.55
143 144 3.788766 GGTTGCCGTGCGCTACAG 61.789 66.667 9.73 0.00 44.01 2.74
144 145 4.610714 TGGTTGCCGTGCGCTACA 62.611 61.111 9.73 0.00 44.01 2.74
145 146 2.899044 TTTGGTTGCCGTGCGCTAC 61.899 57.895 9.73 4.27 41.82 3.58
146 147 2.592001 TTTGGTTGCCGTGCGCTA 60.592 55.556 9.73 0.00 38.78 4.26
147 148 4.264638 GTTTGGTTGCCGTGCGCT 62.265 61.111 9.73 0.00 38.78 5.92
148 149 4.560856 TGTTTGGTTGCCGTGCGC 62.561 61.111 0.00 0.00 38.31 6.09
149 150 2.653766 GTGTTTGGTTGCCGTGCG 60.654 61.111 0.00 0.00 0.00 5.34
150 151 2.653766 CGTGTTTGGTTGCCGTGC 60.654 61.111 0.00 0.00 0.00 5.34
151 152 2.653766 GCGTGTTTGGTTGCCGTG 60.654 61.111 0.00 0.00 0.00 4.94
152 153 3.894947 GGCGTGTTTGGTTGCCGT 61.895 61.111 0.00 0.00 37.81 5.68
155 156 1.000717 ACTTATGGCGTGTTTGGTTGC 60.001 47.619 0.00 0.00 0.00 4.17
156 157 3.049206 CAACTTATGGCGTGTTTGGTTG 58.951 45.455 0.00 0.00 0.00 3.77
157 158 2.544903 GCAACTTATGGCGTGTTTGGTT 60.545 45.455 0.00 0.00 0.00 3.67
158 159 1.000717 GCAACTTATGGCGTGTTTGGT 60.001 47.619 0.00 0.00 0.00 3.67
159 160 1.000827 TGCAACTTATGGCGTGTTTGG 60.001 47.619 0.00 0.00 0.00 3.28
160 161 2.318578 CTGCAACTTATGGCGTGTTTG 58.681 47.619 0.00 0.00 0.00 2.93
161 162 1.335872 GCTGCAACTTATGGCGTGTTT 60.336 47.619 0.00 0.00 0.00 2.83
162 163 0.240945 GCTGCAACTTATGGCGTGTT 59.759 50.000 0.00 0.00 0.00 3.32
163 164 1.586154 GGCTGCAACTTATGGCGTGT 61.586 55.000 0.50 0.00 0.00 4.49
164 165 1.137404 GGCTGCAACTTATGGCGTG 59.863 57.895 0.50 0.00 0.00 5.34
165 166 0.251916 TAGGCTGCAACTTATGGCGT 59.748 50.000 0.50 0.00 0.00 5.68
166 167 0.657840 GTAGGCTGCAACTTATGGCG 59.342 55.000 0.50 0.00 0.00 5.69
167 168 2.044123 AGTAGGCTGCAACTTATGGC 57.956 50.000 5.14 0.00 0.00 4.40
168 169 4.100189 AGAGTAGTAGGCTGCAACTTATGG 59.900 45.833 11.41 0.00 0.00 2.74
169 170 5.269505 AGAGTAGTAGGCTGCAACTTATG 57.730 43.478 11.41 0.00 0.00 1.90
170 171 5.302313 GGTAGAGTAGTAGGCTGCAACTTAT 59.698 44.000 11.41 2.48 0.00 1.73
268 369 1.002468 CACCTGCGACTTTCAGTTTGG 60.002 52.381 0.00 0.00 0.00 3.28
380 481 2.031769 CGCAGCTCATGTTTTGACTTGA 60.032 45.455 0.00 0.00 0.00 3.02
416 517 5.574055 CCATCTGTTTTTCATGTGGAAATCG 59.426 40.000 0.00 0.00 44.59 3.34
576 688 7.496704 TTCGTTTGTTTAGCTACTATACGTG 57.503 36.000 0.00 0.00 0.00 4.49
587 699 3.188460 TGAGGATGCTTCGTTTGTTTAGC 59.812 43.478 0.00 0.00 0.00 3.09
679 807 5.394883 GCATGGACCAGAAAAATCATGTGAT 60.395 40.000 0.00 0.00 35.69 3.06
746 875 6.454795 TCCTGTTCGTTTTACGGTACTATTT 58.545 36.000 0.00 0.00 42.81 1.40
917 1052 1.574428 GCGTTTCATGCTCCGTTGT 59.426 52.632 0.00 0.00 0.00 3.32
1245 1397 6.633500 TTTGTTCAAATTGATTCCTCGAGT 57.367 33.333 12.31 0.00 0.00 4.18
1266 1419 0.112412 ACCAATCGGGGACAGCTTTT 59.888 50.000 0.00 0.00 42.91 2.27
1323 1476 5.789521 ACCGGAAACAAAATTAGGAAATGG 58.210 37.500 9.46 0.00 0.00 3.16
1325 1478 7.056844 TGAACCGGAAACAAAATTAGGAAAT 57.943 32.000 9.46 0.00 0.00 2.17
1329 1486 7.722795 AAAATGAACCGGAAACAAAATTAGG 57.277 32.000 9.46 0.00 0.00 2.69
1365 1522 5.515270 GGTGTTTTGTTTTCTAAGTGACAGC 59.485 40.000 0.00 0.00 0.00 4.40
1619 1786 2.361104 TTGGTGAAGCCGATGCCC 60.361 61.111 0.00 0.00 41.21 5.36
1631 1798 1.337817 CGAAGTCGACGCTCTTGGTG 61.338 60.000 10.46 0.00 43.02 4.17
1716 1883 2.822561 CAGACTCTGTACTTGAGCTCCA 59.177 50.000 12.15 0.00 35.12 3.86
1789 1956 2.060980 GGAGACCAGAGCACGGGAT 61.061 63.158 7.41 0.00 35.41 3.85
1889 2078 5.243954 GCCTGGGAACTAAAGAAGAACAAAT 59.756 40.000 0.00 0.00 0.00 2.32
1896 2085 3.703001 TCTGCCTGGGAACTAAAGAAG 57.297 47.619 0.00 0.00 0.00 2.85
2067 2256 1.344393 TGCCATCCACAGATAGGGAGT 60.344 52.381 0.00 0.00 36.45 3.85
2112 2301 6.984474 TCAGTCGACTAAACAGAAAACATCTT 59.016 34.615 19.57 0.00 35.73 2.40
2132 2324 7.589395 AGTGTGATCGATATACTTCATCAGTC 58.411 38.462 0.00 0.00 36.88 3.51
2227 2419 0.327259 TCTCAAAGCAGGCATCAGCT 59.673 50.000 0.00 0.00 44.31 4.24
2287 2479 7.016361 ACAGAATCTGTGGCGATTTATTAAC 57.984 36.000 15.96 0.00 43.63 2.01
2388 2580 1.726853 AAGCTACTGTAGGCGCAAAG 58.273 50.000 16.09 2.74 0.00 2.77
2481 2673 4.519540 AGAATTTAGCCAACGCAAATGT 57.480 36.364 0.00 0.00 37.52 2.71
2508 2700 9.265901 GTAATGTTCTCAGCACTCATAATACAT 57.734 33.333 0.00 0.00 0.00 2.29
2590 2782 6.942005 TCTCAATATGTTCAAGCTCCTTTTCA 59.058 34.615 0.00 0.00 0.00 2.69
2647 2839 1.808411 ATGTTCGTGCGGATTGAAGT 58.192 45.000 0.00 0.00 0.00 3.01
2658 2850 6.594284 AAGATGACACATGATATGTTCGTG 57.406 37.500 0.00 0.00 42.70 4.35
2688 2880 3.462982 TGAAATGATATTACAGCGGCGT 58.537 40.909 9.37 0.00 0.00 5.68
2755 2947 5.105392 ACCATGATTTGTTCCAATACGCATT 60.105 36.000 0.00 0.00 0.00 3.56
3146 3338 5.813672 TCACACAACACTAGGAAGTAACAAC 59.186 40.000 0.00 0.00 33.48 3.32
3178 3370 5.756833 ACTTTAAGAACACTTGTACGGAAGG 59.243 40.000 0.00 0.00 0.00 3.46
3182 3374 5.751990 ACTCACTTTAAGAACACTTGTACGG 59.248 40.000 0.00 0.00 0.00 4.02
3381 3575 1.277273 CACCTCAATCAGCTCACTGGA 59.723 52.381 0.00 0.00 44.59 3.86
3399 3593 7.331934 TGATCAAGCAAATCTAGTCTTGTACAC 59.668 37.037 0.00 0.00 37.68 2.90
3554 3753 7.988028 ACAAACAGAAGATATAGGCCTTAAGAC 59.012 37.037 12.58 0.00 0.00 3.01
3555 3754 8.090788 ACAAACAGAAGATATAGGCCTTAAGA 57.909 34.615 12.58 0.00 0.00 2.10
3556 3755 8.616076 CAACAAACAGAAGATATAGGCCTTAAG 58.384 37.037 12.58 0.00 0.00 1.85
3704 3913 5.538813 GGGAAAGGAAAAGTTCATTACCACT 59.461 40.000 0.00 0.00 31.69 4.00
3781 3993 3.503363 CAGATAAGGCAAAACACTGCTGA 59.497 43.478 0.00 0.00 42.25 4.26
3785 3997 6.017400 ACAATCAGATAAGGCAAAACACTG 57.983 37.500 0.00 0.00 0.00 3.66
3790 4002 6.158598 GCTCAAACAATCAGATAAGGCAAAA 58.841 36.000 0.00 0.00 0.00 2.44
3826 4038 4.876679 GGGACCTAAGAGCACAAGATAAAC 59.123 45.833 0.00 0.00 0.00 2.01
3846 4058 5.336372 CGCCTATGTTTTTCTTCAAATGGGA 60.336 40.000 0.00 0.00 0.00 4.37
4162 4374 5.531287 ACTGTTGAAAGTCATCCTGGTTTAC 59.469 40.000 0.00 0.00 0.00 2.01
4271 4491 3.738982 ACAGAACACATTGATTCGGACA 58.261 40.909 10.59 0.00 0.00 4.02
4275 4495 7.687445 TCATCATTACAGAACACATTGATTCG 58.313 34.615 0.00 0.00 0.00 3.34
4353 4573 3.635591 AGGCATGCCAACTATAAGCTTT 58.364 40.909 37.18 10.08 38.92 3.51
4902 5144 7.171508 TGCAAGTCTCTGTACAGAAATACAAAG 59.828 37.037 25.14 11.84 36.94 2.77
4949 5191 0.391130 GAGTCAACACGCCCATGCTA 60.391 55.000 0.00 0.00 34.43 3.49
5239 5482 8.675705 TCACCATATGGAATGTTATGTAACAG 57.324 34.615 28.77 0.00 42.86 3.16
5251 5494 6.409005 CCAGTCTTCTCTTCACCATATGGAAT 60.409 42.308 28.77 3.58 38.94 3.01
5401 5644 3.370953 GGTCTTACACGGAGGGAGTAGTA 60.371 52.174 0.00 0.00 0.00 1.82
5438 5689 9.362151 AGACCATTTAATGTCAAAAAGGTCTTA 57.638 29.630 16.14 0.00 45.25 2.10
5440 5691 7.839680 AGACCATTTAATGTCAAAAAGGTCT 57.160 32.000 16.14 16.14 44.12 3.85
5441 5692 9.406828 GTAAGACCATTTAATGTCAAAAAGGTC 57.593 33.333 13.15 13.15 41.85 3.85
5442 5693 8.919145 TGTAAGACCATTTAATGTCAAAAAGGT 58.081 29.630 4.15 0.00 34.47 3.50
5443 5694 9.927668 ATGTAAGACCATTTAATGTCAAAAAGG 57.072 29.630 4.15 0.00 0.00 3.11
5448 5699 9.703892 CCAAAATGTAAGACCATTTAATGTCAA 57.296 29.630 4.15 0.00 42.63 3.18
5449 5700 8.310382 CCCAAAATGTAAGACCATTTAATGTCA 58.690 33.333 4.15 0.00 42.63 3.58
5450 5701 8.527810 TCCCAAAATGTAAGACCATTTAATGTC 58.472 33.333 4.15 2.48 42.63 3.06
5451 5702 8.311109 GTCCCAAAATGTAAGACCATTTAATGT 58.689 33.333 4.15 0.00 42.63 2.71
5452 5703 7.487829 CGTCCCAAAATGTAAGACCATTTAATG 59.512 37.037 0.00 0.00 42.63 1.90
5453 5704 7.363443 CCGTCCCAAAATGTAAGACCATTTAAT 60.363 37.037 0.00 0.00 42.63 1.40
5454 5705 6.071840 CCGTCCCAAAATGTAAGACCATTTAA 60.072 38.462 0.00 0.00 42.63 1.52
5455 5706 5.416326 CCGTCCCAAAATGTAAGACCATTTA 59.584 40.000 0.00 0.00 42.63 1.40
5488 5739 8.472236 GTCAAAGACTTTTTCTTGCTTAAATCG 58.528 33.333 0.00 0.00 44.41 3.34
5582 5836 5.182001 ACAAATCAGAAGCACCATAGTGTTC 59.818 40.000 0.00 0.00 46.35 3.18
6085 7506 1.351350 GGCTGATATGGGGAGGTTACC 59.649 57.143 0.00 0.00 0.00 2.85
6086 7507 2.054799 TGGCTGATATGGGGAGGTTAC 58.945 52.381 0.00 0.00 0.00 2.50
6279 7700 8.765517 AGAAATGGCTCCAATGATATTCTTTTT 58.234 29.630 0.00 0.00 0.00 1.94
6280 7701 8.202137 CAGAAATGGCTCCAATGATATTCTTTT 58.798 33.333 0.00 0.00 0.00 2.27
6281 7702 7.562454 TCAGAAATGGCTCCAATGATATTCTTT 59.438 33.333 0.00 0.00 0.00 2.52
6282 7703 7.014038 GTCAGAAATGGCTCCAATGATATTCTT 59.986 37.037 0.00 0.00 0.00 2.52
6283 7704 6.489361 GTCAGAAATGGCTCCAATGATATTCT 59.511 38.462 0.00 0.00 0.00 2.40
6284 7705 6.489361 AGTCAGAAATGGCTCCAATGATATTC 59.511 38.462 0.00 0.00 0.00 1.75
6285 7706 6.264744 CAGTCAGAAATGGCTCCAATGATATT 59.735 38.462 0.00 0.00 0.00 1.28
6286 7707 5.768662 CAGTCAGAAATGGCTCCAATGATAT 59.231 40.000 0.00 0.00 0.00 1.63
6287 7708 5.128205 CAGTCAGAAATGGCTCCAATGATA 58.872 41.667 0.00 0.00 0.00 2.15
6288 7709 3.952323 CAGTCAGAAATGGCTCCAATGAT 59.048 43.478 0.00 0.00 0.00 2.45
6289 7710 3.245016 ACAGTCAGAAATGGCTCCAATGA 60.245 43.478 0.00 0.00 0.00 2.57
6290 7711 3.087031 ACAGTCAGAAATGGCTCCAATG 58.913 45.455 0.00 0.00 0.00 2.82
6291 7712 3.446442 ACAGTCAGAAATGGCTCCAAT 57.554 42.857 0.00 0.00 0.00 3.16
6419 7896 5.004448 AGTGTTCGAGAGATTACAGAGACA 58.996 41.667 0.00 0.00 41.60 3.41
6452 7929 7.821846 GGCCAATGTTTTACCTAAAATGAATGA 59.178 33.333 0.00 0.00 37.48 2.57
6499 7976 2.485426 CCCATAATAGCAATCTGCCACG 59.515 50.000 0.00 0.00 46.52 4.94
6707 8184 3.613910 GCCATCACCGCACAATTAAAAGT 60.614 43.478 0.00 0.00 0.00 2.66
6850 8327 4.891756 CCATGGTCCTTGATTAGCTGAATT 59.108 41.667 2.57 0.00 0.00 2.17
6895 8372 0.743688 CAGCATGAGCCTACTCGTCT 59.256 55.000 0.00 0.00 46.69 4.18
6898 8375 1.929836 GAAACAGCATGAGCCTACTCG 59.070 52.381 0.00 0.00 46.69 4.18
6910 8387 2.224426 ACATGAACTACCGGAAACAGCA 60.224 45.455 9.46 0.00 0.00 4.41
6981 8463 5.692115 ACATATAATATGTGCGGGGATGA 57.308 39.130 0.00 0.00 0.00 2.92
6988 8470 7.899178 TCCCAACTAACATATAATATGTGCG 57.101 36.000 0.25 0.00 31.80 5.34
7023 8505 4.999212 TCGCAGCCGACATTGTTA 57.001 50.000 0.00 0.00 38.82 2.41
7080 8562 7.869937 AGATATACCGTGATGTGATTTCAAGAG 59.130 37.037 0.00 0.00 0.00 2.85
7131 8613 6.039047 ACCACTATGATTTTCTGCATGTCATC 59.961 38.462 0.00 0.00 32.31 2.92
7159 8641 7.612244 GGGCATCATCTAGTTCTAGATACAGTA 59.388 40.741 18.24 6.36 35.21 2.74
7160 8642 6.435904 GGGCATCATCTAGTTCTAGATACAGT 59.564 42.308 18.24 6.07 35.21 3.55
7189 8671 4.092821 GTGAATACAATGTAGCAGCAACGA 59.907 41.667 0.00 0.00 0.00 3.85
7203 8685 4.991776 TGGGATGTCCTTTGTGAATACAA 58.008 39.130 0.00 0.00 44.66 2.41
7482 9001 2.221169 TGCTAGTTTCTGTGCAACCAG 58.779 47.619 0.00 0.00 34.36 4.00
7500 9019 3.664551 AGGTCTAAATAAACCCCCTGC 57.335 47.619 0.00 0.00 36.11 4.85
7811 9609 3.243267 GGTTGGCTTCGTGTTGTAACATT 60.243 43.478 0.26 0.00 41.59 2.71
7812 9610 2.292292 GGTTGGCTTCGTGTTGTAACAT 59.708 45.455 0.26 0.00 41.59 2.71
7813 9611 1.671845 GGTTGGCTTCGTGTTGTAACA 59.328 47.619 0.00 0.00 36.38 2.41
7814 9612 1.333435 CGGTTGGCTTCGTGTTGTAAC 60.333 52.381 0.00 0.00 0.00 2.50
7815 9613 0.938713 CGGTTGGCTTCGTGTTGTAA 59.061 50.000 0.00 0.00 0.00 2.41
7816 9614 0.104487 TCGGTTGGCTTCGTGTTGTA 59.896 50.000 0.00 0.00 0.00 2.41
7817 9615 0.745128 TTCGGTTGGCTTCGTGTTGT 60.745 50.000 0.00 0.00 0.00 3.32
7818 9616 0.316689 GTTCGGTTGGCTTCGTGTTG 60.317 55.000 0.00 0.00 0.00 3.33
8066 9865 0.996462 GACGCCGACGAATGATTTGA 59.004 50.000 0.00 0.00 43.93 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.