Multiple sequence alignment - TraesCS6D01G197600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G197600
chr6D
100.000
2288
0
0
1
2288
275663593
275665880
0.000000e+00
4226
1
TraesCS6D01G197600
chr6D
83.834
699
98
8
2
686
211073850
211074547
0.000000e+00
651
2
TraesCS6D01G197600
chr6A
87.453
1602
96
45
699
2288
396288485
396289993
0.000000e+00
1748
3
TraesCS6D01G197600
chr6B
94.511
583
29
3
690
1270
437458546
437459127
0.000000e+00
896
4
TraesCS6D01G197600
chr6B
95.610
205
9
0
1398
1602
437459209
437459413
1.690000e-86
329
5
TraesCS6D01G197600
chr6B
95.122
205
10
0
1398
1602
437460140
437460344
7.880000e-85
324
6
TraesCS6D01G197600
chr6B
90.336
238
21
2
1837
2074
437459544
437459779
6.140000e-81
311
7
TraesCS6D01G197600
chr6B
90.336
238
21
2
1837
2074
437460475
437460710
6.140000e-81
311
8
TraesCS6D01G197600
chr6B
92.453
106
5
1
2186
2288
437469748
437469853
5.090000e-32
148
9
TraesCS6D01G197600
chr6B
92.857
98
7
0
1173
1270
437459961
437460058
2.370000e-30
143
10
TraesCS6D01G197600
chr2D
85.272
679
93
4
1
673
296351772
296352449
0.000000e+00
693
11
TraesCS6D01G197600
chr2D
80.383
678
119
12
1
669
147539284
147538612
9.430000e-139
503
12
TraesCS6D01G197600
chr4B
84.571
700
89
12
1
687
102503004
102502311
0.000000e+00
676
13
TraesCS6D01G197600
chr2A
84.706
680
95
6
1
673
367611469
367612146
0.000000e+00
671
14
TraesCS6D01G197600
chr1A
83.481
678
98
11
1
669
279349049
279348377
8.980000e-174
619
15
TraesCS6D01G197600
chr2B
82.133
694
109
13
1
685
253699120
253699807
4.240000e-162
580
16
TraesCS6D01G197600
chr2B
81.662
698
114
12
1
688
208038219
208038912
3.300000e-158
568
17
TraesCS6D01G197600
chr3B
80.236
678
123
7
19
688
388114618
388115292
1.220000e-137
499
18
TraesCS6D01G197600
chr7D
81.250
192
19
10
2024
2206
457147289
457147472
3.060000e-29
139
19
TraesCS6D01G197600
chr7A
82.171
129
15
6
2024
2149
543343282
543343159
1.120000e-18
104
20
TraesCS6D01G197600
chr7B
81.203
133
19
6
2024
2151
479232815
479232946
4.020000e-18
102
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G197600
chr6D
275663593
275665880
2287
False
4226.000000
4226
100.000000
1
2288
1
chr6D.!!$F2
2287
1
TraesCS6D01G197600
chr6D
211073850
211074547
697
False
651.000000
651
83.834000
2
686
1
chr6D.!!$F1
684
2
TraesCS6D01G197600
chr6A
396288485
396289993
1508
False
1748.000000
1748
87.453000
699
2288
1
chr6A.!!$F1
1589
3
TraesCS6D01G197600
chr6B
437458546
437460710
2164
False
385.666667
896
93.128667
690
2074
6
chr6B.!!$F2
1384
4
TraesCS6D01G197600
chr2D
296351772
296352449
677
False
693.000000
693
85.272000
1
673
1
chr2D.!!$F1
672
5
TraesCS6D01G197600
chr2D
147538612
147539284
672
True
503.000000
503
80.383000
1
669
1
chr2D.!!$R1
668
6
TraesCS6D01G197600
chr4B
102502311
102503004
693
True
676.000000
676
84.571000
1
687
1
chr4B.!!$R1
686
7
TraesCS6D01G197600
chr2A
367611469
367612146
677
False
671.000000
671
84.706000
1
673
1
chr2A.!!$F1
672
8
TraesCS6D01G197600
chr1A
279348377
279349049
672
True
619.000000
619
83.481000
1
669
1
chr1A.!!$R1
668
9
TraesCS6D01G197600
chr2B
253699120
253699807
687
False
580.000000
580
82.133000
1
685
1
chr2B.!!$F2
684
10
TraesCS6D01G197600
chr2B
208038219
208038912
693
False
568.000000
568
81.662000
1
688
1
chr2B.!!$F1
687
11
TraesCS6D01G197600
chr3B
388114618
388115292
674
False
499.000000
499
80.236000
19
688
1
chr3B.!!$F1
669
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
669
688
0.336737
CTGGTAGGAGGGAGAGTGGT
59.663
60.0
0.0
0.0
0.0
4.16
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1921
2909
0.25064
AGAGTGCTTGGGACTTGCTG
60.251
55.0
0.0
0.0
0.0
4.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
55
56
5.410746
AGTTTTGATGCATGATATAGCCTCG
59.589
40.000
2.46
0.00
0.00
4.63
73
74
2.557056
CTCGAGACACTTGTGGGAGTAA
59.443
50.000
6.58
0.00
0.00
2.24
83
84
5.065218
CACTTGTGGGAGTAATTGCTATCAC
59.935
44.000
16.36
16.36
0.00
3.06
86
87
6.553953
TGTGGGAGTAATTGCTATCACTTA
57.446
37.500
20.67
7.18
0.00
2.24
197
203
1.825474
CTTCAAGCCGGAGTCCTAAGA
59.175
52.381
5.05
0.00
0.00
2.10
203
209
3.438183
AGCCGGAGTCCTAAGAAAACTA
58.562
45.455
5.05
0.00
0.00
2.24
286
293
0.954452
CATTCTTAAGGGATGCGGGC
59.046
55.000
1.85
0.00
0.00
6.13
295
302
1.656441
GGATGCGGGCATTCATGAC
59.344
57.895
7.68
0.00
36.70
3.06
322
329
7.658179
TTTTTATTATTTGGCGAACAATGCA
57.342
28.000
1.16
0.00
39.21
3.96
367
374
7.682787
AGATAAGTGTGATCAATACCTCCTT
57.317
36.000
0.00
0.00
0.00
3.36
419
426
8.891985
TCACTTTCATGCTAGGAGAGATATAT
57.108
34.615
0.00
0.00
0.00
0.86
482
490
4.464008
ACACTTGAGAGATTTTGCCAAGA
58.536
39.130
0.00
0.00
38.02
3.02
503
511
1.405872
TGCATGATTCCCAATGAGGC
58.594
50.000
0.00
0.00
35.39
4.70
551
559
3.452755
TGTCGCGGATTTCATATCTGT
57.547
42.857
6.13
0.00
0.00
3.41
567
575
3.263369
TCTGTAGTAACTGTGGGGGAA
57.737
47.619
0.00
0.00
0.00
3.97
587
595
4.940654
GGAATTGAGAGGAGTTTCTGAAGG
59.059
45.833
0.00
0.00
0.00
3.46
658
677
1.975680
GGAGGTGTTTGACTGGTAGGA
59.024
52.381
0.00
0.00
0.00
2.94
669
688
0.336737
CTGGTAGGAGGGAGAGTGGT
59.663
60.000
0.00
0.00
0.00
4.16
673
692
1.064832
GTAGGAGGGAGAGTGGTACGT
60.065
57.143
0.00
0.00
0.00
3.57
735
754
2.163818
TTCGTCCGGCCAATGATATC
57.836
50.000
2.24
0.00
0.00
1.63
928
952
1.961277
CGACCCTGCTTGCGAAAGT
60.961
57.895
4.74
0.00
0.00
2.66
994
1018
1.122019
ACTGAAGCAAGGGAGGTCGT
61.122
55.000
0.00
0.00
0.00
4.34
1068
1092
1.667154
CCGGCATGGAGAAGACGAGA
61.667
60.000
0.00
0.00
42.00
4.04
1292
1340
0.898320
CACGGTGAGGAATGAGGAGT
59.102
55.000
0.74
0.00
0.00
3.85
1409
1457
2.690786
TGCGGAAAAGCAGTTATACGT
58.309
42.857
0.00
0.00
42.92
3.57
1410
1458
3.847542
TGCGGAAAAGCAGTTATACGTA
58.152
40.909
0.00
0.00
42.92
3.57
1414
1462
5.233689
GCGGAAAAGCAGTTATACGTATTCT
59.766
40.000
14.33
9.91
37.05
2.40
1438
1486
0.042794
GTGTTAACCGTGTCGTGTGC
60.043
55.000
2.48
0.00
0.00
4.57
1546
1597
3.067106
ACGGTACAATTGTCAGCAGAAG
58.933
45.455
15.85
2.21
0.00
2.85
1595
1646
1.003116
GTGCTTGATCATGACGATGCC
60.003
52.381
12.54
0.00
33.17
4.40
1618
1669
4.377431
CGGTTTCAAGATTCCTGACTTTCG
60.377
45.833
0.00
0.00
0.00
3.46
1636
1687
7.230913
TGACTTTCGGGTGAAATGGTTAATAAA
59.769
33.333
0.00
0.00
42.90
1.40
1637
1688
7.953752
ACTTTCGGGTGAAATGGTTAATAAAA
58.046
30.769
0.00
0.00
42.90
1.52
1692
1743
1.468054
GCATGGCCAATTCGTCTCAAC
60.468
52.381
10.96
0.00
0.00
3.18
1723
2705
7.715686
CACCCTCTGTTCCTAAATCCTAAATAC
59.284
40.741
0.00
0.00
0.00
1.89
1726
2708
9.110502
CCTCTGTTCCTAAATCCTAAATACAAC
57.889
37.037
0.00
0.00
0.00
3.32
1732
2714
8.259049
TCCTAAATCCTAAATACAACACGTTG
57.741
34.615
8.35
8.35
45.58
4.10
1756
2738
9.672086
TTGTTTCATTTCAAGTTCCTAAATACG
57.328
29.630
0.00
0.00
0.00
3.06
1757
2739
8.293867
TGTTTCATTTCAAGTTCCTAAATACGG
58.706
33.333
0.00
0.00
0.00
4.02
1758
2740
8.508875
GTTTCATTTCAAGTTCCTAAATACGGA
58.491
33.333
0.00
0.00
0.00
4.69
1759
2741
7.843490
TCATTTCAAGTTCCTAAATACGGAG
57.157
36.000
0.00
0.00
0.00
4.63
1813
2795
9.656323
AGAGGTAGTAAAACATACCAGATCATA
57.344
33.333
0.00
0.00
43.33
2.15
1815
2797
9.656323
AGGTAGTAAAACATACCAGATCATAGA
57.344
33.333
0.00
0.00
43.33
1.98
1822
2804
9.479549
AAAACATACCAGATCATAGAAAACCAT
57.520
29.630
0.00
0.00
0.00
3.55
1823
2805
9.479549
AAACATACCAGATCATAGAAAACCATT
57.520
29.630
0.00
0.00
0.00
3.16
1825
2807
9.561069
ACATACCAGATCATAGAAAACCATTAC
57.439
33.333
0.00
0.00
0.00
1.89
1826
2808
9.003658
CATACCAGATCATAGAAAACCATTACC
57.996
37.037
0.00
0.00
0.00
2.85
1827
2809
7.213178
ACCAGATCATAGAAAACCATTACCT
57.787
36.000
0.00
0.00
0.00
3.08
1828
2810
7.283329
ACCAGATCATAGAAAACCATTACCTC
58.717
38.462
0.00
0.00
0.00
3.85
1829
2811
7.092444
ACCAGATCATAGAAAACCATTACCTCA
60.092
37.037
0.00
0.00
0.00
3.86
1830
2812
7.775093
CCAGATCATAGAAAACCATTACCTCAA
59.225
37.037
0.00
0.00
0.00
3.02
1831
2813
9.177608
CAGATCATAGAAAACCATTACCTCAAA
57.822
33.333
0.00
0.00
0.00
2.69
1832
2814
9.753674
AGATCATAGAAAACCATTACCTCAAAA
57.246
29.630
0.00
0.00
0.00
2.44
1862
2844
4.768448
TCATAGAAAACCACACTCCGACTA
59.232
41.667
0.00
0.00
0.00
2.59
1867
2849
1.287815
CCACACTCCGACTACGCAA
59.712
57.895
0.00
0.00
38.29
4.85
1868
2850
0.319211
CCACACTCCGACTACGCAAA
60.319
55.000
0.00
0.00
38.29
3.68
1883
2871
2.027745
ACGCAAACAGATCCATCTCAGT
60.028
45.455
0.00
0.00
34.22
3.41
1889
2877
6.644592
GCAAACAGATCCATCTCAGTAGTATC
59.355
42.308
0.00
0.00
34.22
2.24
1921
2909
4.383052
GCGATCATAGCACATACTGTACAC
59.617
45.833
0.00
0.00
34.19
2.90
1940
2928
0.250640
CAGCAAGTCCCAAGCACTCT
60.251
55.000
0.00
0.00
0.00
3.24
1941
2929
0.475906
AGCAAGTCCCAAGCACTCTT
59.524
50.000
0.00
0.00
0.00
2.85
1978
2966
1.850640
CGGCATACGTATTCGGTGC
59.149
57.895
5.03
7.46
45.13
5.01
2003
2991
8.227731
CTACAGTAGCTTTTATTTTTGTTGGC
57.772
34.615
0.00
0.00
0.00
4.52
2004
2992
5.689961
ACAGTAGCTTTTATTTTTGTTGGCG
59.310
36.000
0.00
0.00
0.00
5.69
2035
3023
5.448654
AGAGGCTGCCATTTTATTACATCA
58.551
37.500
22.65
0.00
0.00
3.07
2074
3062
0.673985
GGTTTGCCTCCTCAACAACC
59.326
55.000
0.00
0.00
0.00
3.77
2077
3065
1.360393
TTGCCTCCTCAACAACCCCT
61.360
55.000
0.00
0.00
0.00
4.79
2080
3068
1.303643
CTCCTCAACAACCCCTGGC
60.304
63.158
0.00
0.00
0.00
4.85
2082
3070
2.283173
CTCAACAACCCCTGGCCC
60.283
66.667
0.00
0.00
0.00
5.80
2083
3071
3.886550
CTCAACAACCCCTGGCCCC
62.887
68.421
0.00
0.00
0.00
5.80
2100
3088
2.203126
CGGGGCCTGCTGATCTTC
60.203
66.667
0.84
0.00
0.00
2.87
2161
3149
0.774908
TACAACCCCAACCCCAAGAG
59.225
55.000
0.00
0.00
0.00
2.85
2180
3168
6.480320
CCAAGAGTAACATTAGCCACAGATAC
59.520
42.308
0.00
0.00
0.00
2.24
2182
3170
7.425224
AGAGTAACATTAGCCACAGATACTT
57.575
36.000
0.00
0.00
0.00
2.24
2184
3172
8.978472
AGAGTAACATTAGCCACAGATACTTTA
58.022
33.333
0.00
0.00
0.00
1.85
2188
3176
2.604046
AGCCACAGATACTTTAGCCG
57.396
50.000
0.00
0.00
0.00
5.52
2207
3195
2.493547
GCTGGTTGCCAAGGATACC
58.506
57.895
0.00
0.00
30.80
2.73
2218
3206
3.670625
CCAAGGATACCGAAGAACAACA
58.329
45.455
0.00
0.00
37.17
3.33
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
55
56
3.437049
GCAATTACTCCCACAAGTGTCTC
59.563
47.826
0.00
0.00
0.00
3.36
148
154
7.346751
TCTCAACTTCCACTTAAGCATTTTT
57.653
32.000
1.29
0.00
0.00
1.94
165
171
2.548920
CGGCTTGAAGAACCTCTCAACT
60.549
50.000
0.00
0.00
0.00
3.16
197
203
4.075963
TGTACTTGGGCTTCGTAGTTTT
57.924
40.909
0.00
0.00
0.00
2.43
203
209
0.763035
AGGTTGTACTTGGGCTTCGT
59.237
50.000
0.00
0.00
0.00
3.85
295
302
7.578736
GCATTGTTCGCCAAATAATAAAAATCG
59.421
33.333
0.00
0.00
36.44
3.34
322
329
2.041265
AGGAACGGGATGAGGCCT
59.959
61.111
3.86
3.86
0.00
5.19
367
374
8.621532
AGTTTTGCATGAAAGTATTAGTGAGA
57.378
30.769
0.00
0.00
0.00
3.27
419
426
5.189539
TCATGGAGGTGAAATGACACATAGA
59.810
40.000
0.00
0.00
41.88
1.98
482
490
2.367567
GCCTCATTGGGAATCATGCAAT
59.632
45.455
0.00
0.00
36.00
3.56
503
511
1.053264
ATGTGGCTCTAGAGGGCTGG
61.053
60.000
21.23
0.00
0.00
4.85
551
559
4.431378
TCTCAATTCCCCCACAGTTACTA
58.569
43.478
0.00
0.00
0.00
1.82
567
575
6.019748
TCTACCTTCAGAAACTCCTCTCAAT
58.980
40.000
0.00
0.00
0.00
2.57
621
636
7.253905
ACACCTCCTAGCAAAGAGTAATAAA
57.746
36.000
0.00
0.00
0.00
1.40
658
677
1.546961
CTGAACGTACCACTCTCCCT
58.453
55.000
0.00
0.00
0.00
4.20
669
688
1.269723
CAGTCAGGTGAGCTGAACGTA
59.730
52.381
16.69
0.00
32.15
3.57
688
707
2.165437
GTCACTGCTTCCAAACAAACCA
59.835
45.455
0.00
0.00
0.00
3.67
735
754
2.631418
TCTAAGTTTGAGCCGTCTCG
57.369
50.000
0.00
0.00
42.26
4.04
903
927
3.764466
AAGCAGGGTCGAGGCGAG
61.764
66.667
0.00
0.00
36.23
5.03
928
952
2.124277
TCTCTAGACAAGCTGCCGTA
57.876
50.000
0.00
0.00
0.00
4.02
1270
1294
1.599047
CTCATTCCTCACCGTGGCT
59.401
57.895
0.00
0.00
0.00
4.75
1385
1433
4.912766
CGTATAACTGCTTTTCCGCAAAAA
59.087
37.500
0.00
0.00
39.80
1.94
1386
1434
4.023878
ACGTATAACTGCTTTTCCGCAAAA
60.024
37.500
0.00
0.00
39.80
2.44
1387
1435
3.499157
ACGTATAACTGCTTTTCCGCAAA
59.501
39.130
0.00
0.00
39.80
3.68
1388
1436
3.068560
ACGTATAACTGCTTTTCCGCAA
58.931
40.909
0.00
0.00
39.80
4.85
1389
1437
2.690786
ACGTATAACTGCTTTTCCGCA
58.309
42.857
0.00
0.00
38.40
5.69
1390
1438
5.233689
AGAATACGTATAACTGCTTTTCCGC
59.766
40.000
8.83
0.00
0.00
5.54
1391
1439
6.823678
AGAATACGTATAACTGCTTTTCCG
57.176
37.500
8.83
0.00
0.00
4.30
1394
1442
9.609346
ACCATAAGAATACGTATAACTGCTTTT
57.391
29.630
8.83
0.00
0.00
2.27
1395
1443
9.042008
CACCATAAGAATACGTATAACTGCTTT
57.958
33.333
8.83
0.20
0.00
3.51
1396
1444
8.202137
ACACCATAAGAATACGTATAACTGCTT
58.798
33.333
8.83
9.84
0.00
3.91
1397
1445
7.723324
ACACCATAAGAATACGTATAACTGCT
58.277
34.615
8.83
0.00
0.00
4.24
1398
1446
7.941795
ACACCATAAGAATACGTATAACTGC
57.058
36.000
8.83
0.00
0.00
4.40
1402
1450
9.462174
CGGTTAACACCATAAGAATACGTATAA
57.538
33.333
8.83
0.00
44.53
0.98
1403
1451
8.629158
ACGGTTAACACCATAAGAATACGTATA
58.371
33.333
8.83
0.00
44.53
1.47
1404
1452
7.436080
CACGGTTAACACCATAAGAATACGTAT
59.564
37.037
8.10
1.14
44.53
3.06
1405
1453
6.751425
CACGGTTAACACCATAAGAATACGTA
59.249
38.462
8.10
0.00
44.53
3.57
1406
1454
5.577945
CACGGTTAACACCATAAGAATACGT
59.422
40.000
8.10
0.00
44.53
3.57
1407
1455
5.577945
ACACGGTTAACACCATAAGAATACG
59.422
40.000
8.10
0.00
44.53
3.06
1408
1456
6.237648
CGACACGGTTAACACCATAAGAATAC
60.238
42.308
8.10
0.00
44.53
1.89
1409
1457
5.806502
CGACACGGTTAACACCATAAGAATA
59.193
40.000
8.10
0.00
44.53
1.75
1410
1458
4.628333
CGACACGGTTAACACCATAAGAAT
59.372
41.667
8.10
0.00
44.53
2.40
1414
1462
3.058450
CACGACACGGTTAACACCATAA
58.942
45.455
8.10
0.00
44.53
1.90
1456
1504
2.855963
GCAGCGGAAAACATCATCAATG
59.144
45.455
0.00
0.00
41.48
2.82
1546
1597
3.921677
TCAGTCTCGTAAACACCATTCC
58.078
45.455
0.00
0.00
0.00
3.01
1595
1646
4.377431
CGAAAGTCAGGAATCTTGAAACCG
60.377
45.833
0.00
0.00
0.00
4.44
1636
1687
3.094484
TGCATTCCCGGGTTTTATCTT
57.906
42.857
22.86
0.00
0.00
2.40
1637
1688
2.818751
TGCATTCCCGGGTTTTATCT
57.181
45.000
22.86
0.00
0.00
1.98
1670
1721
0.659957
GAGACGAATTGGCCATGCTC
59.340
55.000
6.09
2.32
0.00
4.26
1692
1743
4.884668
TTTAGGAACAGAGGGTGTACTG
57.115
45.455
0.00
0.00
39.03
2.74
1723
2705
6.388259
AACTTGAAATGAAACAACGTGTTG
57.612
33.333
11.02
11.02
40.14
3.33
1726
2708
5.339990
AGGAACTTGAAATGAAACAACGTG
58.660
37.500
0.00
0.00
27.25
4.49
1732
2714
8.508875
TCCGTATTTAGGAACTTGAAATGAAAC
58.491
33.333
0.00
0.00
41.75
2.78
1744
2726
9.978044
AATGTCTTATACTCCGTATTTAGGAAC
57.022
33.333
0.00
0.00
37.32
3.62
1755
2737
6.422776
ACTGCAAAAATGTCTTATACTCCG
57.577
37.500
0.00
0.00
0.00
4.63
1756
2738
7.816640
TGAACTGCAAAAATGTCTTATACTCC
58.183
34.615
0.00
0.00
0.00
3.85
1757
2739
9.677567
TTTGAACTGCAAAAATGTCTTATACTC
57.322
29.630
0.00
0.00
43.18
2.59
1804
2786
7.282585
TGAGGTAATGGTTTTCTATGATCTGG
58.717
38.462
0.00
0.00
0.00
3.86
1832
2814
7.308589
CGGAGTGTGGTTTTCTATGATCTTTTT
60.309
37.037
0.00
0.00
0.00
1.94
1833
2815
6.149474
CGGAGTGTGGTTTTCTATGATCTTTT
59.851
38.462
0.00
0.00
0.00
2.27
1834
2816
5.643777
CGGAGTGTGGTTTTCTATGATCTTT
59.356
40.000
0.00
0.00
0.00
2.52
1835
2817
5.046591
TCGGAGTGTGGTTTTCTATGATCTT
60.047
40.000
0.00
0.00
0.00
2.40
1836
2818
4.466370
TCGGAGTGTGGTTTTCTATGATCT
59.534
41.667
0.00
0.00
0.00
2.75
1837
2819
4.567159
GTCGGAGTGTGGTTTTCTATGATC
59.433
45.833
0.00
0.00
0.00
2.92
1838
2820
4.223032
AGTCGGAGTGTGGTTTTCTATGAT
59.777
41.667
0.00
0.00
0.00
2.45
1839
2821
3.576982
AGTCGGAGTGTGGTTTTCTATGA
59.423
43.478
0.00
0.00
0.00
2.15
1840
2822
3.926616
AGTCGGAGTGTGGTTTTCTATG
58.073
45.455
0.00
0.00
0.00
2.23
1841
2823
4.380233
CGTAGTCGGAGTGTGGTTTTCTAT
60.380
45.833
0.00
0.00
0.00
1.98
1842
2824
3.058016
CGTAGTCGGAGTGTGGTTTTCTA
60.058
47.826
0.00
0.00
0.00
2.10
1853
2835
0.956633
TCTGTTTGCGTAGTCGGAGT
59.043
50.000
0.00
0.00
38.80
3.85
1862
2844
2.027745
ACTGAGATGGATCTGTTTGCGT
60.028
45.455
0.00
0.00
37.25
5.24
1867
2849
6.377080
TGGATACTACTGAGATGGATCTGTT
58.623
40.000
0.00
0.00
35.41
3.16
1868
2850
5.958321
TGGATACTACTGAGATGGATCTGT
58.042
41.667
0.00
0.00
35.41
3.41
1883
2871
5.728637
ATGATCGCTGAACATGGATACTA
57.271
39.130
0.00
0.00
37.61
1.82
1889
2877
2.222678
GTGCTATGATCGCTGAACATGG
59.777
50.000
0.00
8.73
0.00
3.66
1921
2909
0.250640
AGAGTGCTTGGGACTTGCTG
60.251
55.000
0.00
0.00
0.00
4.41
1931
2919
4.429108
GCCTAGTTAGAGAAGAGTGCTTG
58.571
47.826
0.00
0.00
33.61
4.01
1940
2928
3.132289
CCGTGATTGGCCTAGTTAGAGAA
59.868
47.826
3.32
0.00
0.00
2.87
1941
2929
2.693591
CCGTGATTGGCCTAGTTAGAGA
59.306
50.000
3.32
0.00
0.00
3.10
1978
2966
7.060633
CGCCAACAAAAATAAAAGCTACTGTAG
59.939
37.037
10.48
10.48
0.00
2.74
2003
2991
4.577246
GCAGCCTCTACCGCTCCG
62.577
72.222
0.00
0.00
33.17
4.63
2004
2992
4.228567
GGCAGCCTCTACCGCTCC
62.229
72.222
3.29
0.00
33.17
4.70
2011
2999
6.600388
TGATGTAATAAAATGGCAGCCTCTA
58.400
36.000
14.15
0.00
0.00
2.43
2035
3023
2.093341
CCTTATGCAGCAATGGCCTTTT
60.093
45.455
3.32
0.00
42.56
2.27
2082
3070
3.764160
GAAGATCAGCAGGCCCCGG
62.764
68.421
0.00
0.00
0.00
5.73
2083
3071
2.203126
GAAGATCAGCAGGCCCCG
60.203
66.667
0.00
0.00
0.00
5.73
2161
3149
7.041984
GGCTAAAGTATCTGTGGCTAATGTTAC
60.042
40.741
0.00
0.00
0.00
2.50
2180
3168
2.877691
GCAACCAGCCGGCTAAAG
59.122
61.111
32.30
22.97
37.23
1.85
2204
3192
8.664798
CATGATTTCTTATGTTGTTCTTCGGTA
58.335
33.333
0.00
0.00
0.00
4.02
2207
3195
8.955061
AACATGATTTCTTATGTTGTTCTTCG
57.045
30.769
0.00
0.00
43.66
3.79
2250
3241
7.743838
GCAAATTAATAAGAATTTTTGCGTGCA
59.256
29.630
5.58
0.00
38.26
4.57
2261
3252
7.499232
AGGTGTAGCGAGCAAATTAATAAGAAT
59.501
33.333
0.00
0.00
0.00
2.40
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.